Multiple sequence alignment - TraesCS6D01G299200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G299200 chr6D 100.000 3649 0 0 1 3649 409662041 409665689 0.000000e+00 6739.0
1 TraesCS6D01G299200 chr6A 89.594 2239 172 32 799 3006 555108968 555111176 0.000000e+00 2787.0
2 TraesCS6D01G299200 chr6A 82.041 774 121 12 25 784 472378368 472377599 0.000000e+00 643.0
3 TraesCS6D01G299200 chr6A 80.407 786 142 6 12 786 123524527 123525311 4.060000e-164 588.0
4 TraesCS6D01G299200 chr6A 90.753 292 15 5 3359 3649 555111219 555111499 2.660000e-101 379.0
5 TraesCS6D01G299200 chr6B 91.206 1194 73 14 1825 3006 615637384 615638557 0.000000e+00 1594.0
6 TraesCS6D01G299200 chr6B 84.751 1023 78 39 779 1764 615636382 615637363 0.000000e+00 953.0
7 TraesCS6D01G299200 chr6B 83.798 932 110 26 800 1705 560624671 560625587 0.000000e+00 846.0
8 TraesCS6D01G299200 chr6B 91.129 496 27 7 3157 3649 615638550 615639031 0.000000e+00 656.0
9 TraesCS6D01G299200 chr6B 79.469 979 117 37 1201 2143 115216161 115215231 5.180000e-173 617.0
10 TraesCS6D01G299200 chr6B 89.385 179 11 1 1828 2006 560625765 560625935 6.130000e-53 219.0
11 TraesCS6D01G299200 chr1D 93.235 813 43 4 1 802 43191719 43192530 0.000000e+00 1186.0
12 TraesCS6D01G299200 chr4A 90.785 803 63 6 1 792 90425100 90424298 0.000000e+00 1062.0
13 TraesCS6D01G299200 chr4A 90.327 796 65 7 1 785 679699575 679700369 0.000000e+00 1033.0
14 TraesCS6D01G299200 chr1A 89.322 796 66 7 1 786 320295183 320295969 0.000000e+00 981.0
15 TraesCS6D01G299200 chr1A 78.782 985 109 40 1201 2143 410222163 410223089 1.470000e-158 569.0
16 TraesCS6D01G299200 chrUn 85.070 931 105 23 800 1705 49383214 49382293 0.000000e+00 918.0
17 TraesCS6D01G299200 chrUn 82.734 278 21 14 1748 2006 49382215 49381946 4.740000e-54 222.0
18 TraesCS6D01G299200 chr3B 82.903 930 122 26 801 1705 795777627 795778544 0.000000e+00 802.0
19 TraesCS6D01G299200 chr3B 80.108 553 63 25 1201 1730 550394891 550394363 5.760000e-98 368.0
20 TraesCS6D01G299200 chr3B 81.587 315 28 15 1690 1975 703905695 703905382 2.190000e-57 233.0
21 TraesCS6D01G299200 chr3B 92.617 149 11 0 3004 3152 566838277 566838425 7.940000e-52 215.0
22 TraesCS6D01G299200 chr3B 87.075 147 16 2 3012 3156 72465363 72465218 2.920000e-36 163.0
23 TraesCS6D01G299200 chr3B 80.921 152 21 5 1555 1705 703905853 703905709 2.980000e-21 113.0
24 TraesCS6D01G299200 chr3B 90.667 75 7 0 1988 2062 703904289 703904215 2.320000e-17 100.0
25 TraesCS6D01G299200 chr3A 82.292 768 120 11 33 788 110469726 110470489 0.000000e+00 651.0
26 TraesCS6D01G299200 chr3A 86.269 386 43 5 411 786 708670337 708669952 9.430000e-111 411.0
27 TraesCS6D01G299200 chr2B 79.715 981 121 36 1201 2143 496455690 496454750 3.970000e-179 638.0
28 TraesCS6D01G299200 chr2B 79.715 981 119 42 1201 2143 69468627 69467689 1.430000e-178 636.0
29 TraesCS6D01G299200 chr2B 79.124 982 125 41 1201 2143 799778044 799778984 4.030000e-169 604.0
30 TraesCS6D01G299200 chr2B 81.226 522 83 10 277 786 5788949 5788431 1.220000e-109 407.0
31 TraesCS6D01G299200 chr2B 85.417 336 37 8 1201 1527 710352398 710352730 4.510000e-89 339.0
32 TraesCS6D01G299200 chr2B 86.056 251 17 6 1826 2075 710352800 710353033 1.680000e-63 254.0
33 TraesCS6D01G299200 chr2B 91.892 148 10 1 3008 3155 52617894 52617749 4.780000e-49 206.0
34 TraesCS6D01G299200 chr5D 79.819 773 144 7 25 786 97377155 97376384 1.480000e-153 553.0
35 TraesCS6D01G299200 chr5B 90.029 341 25 4 454 785 377630365 377630025 2.010000e-117 433.0
36 TraesCS6D01G299200 chr2D 77.839 722 144 11 105 814 638337021 638336304 2.010000e-117 433.0
37 TraesCS6D01G299200 chr7D 78.752 753 74 37 1201 1914 503943666 503942961 3.370000e-115 425.0
38 TraesCS6D01G299200 chr7D 85.437 103 8 7 3175 3272 603652566 603652666 2.320000e-17 100.0
39 TraesCS6D01G299200 chr7D 83.333 102 13 3 3185 3284 603653503 603653404 1.400000e-14 91.6
40 TraesCS6D01G299200 chr7A 81.800 489 57 13 1670 2143 283575647 283576118 7.390000e-102 381.0
41 TraesCS6D01G299200 chr7A 87.248 149 16 2 3012 3158 694195904 694195757 2.250000e-37 167.0
42 TraesCS6D01G299200 chr4D 91.039 279 24 1 800 1077 245070775 245070497 3.440000e-100 375.0
43 TraesCS6D01G299200 chr7B 85.000 340 31 10 1201 1527 691517145 691516813 9.770000e-86 327.0
44 TraesCS6D01G299200 chr7B 84.043 94 11 4 3182 3272 685385253 685385345 1.810000e-13 87.9
45 TraesCS6D01G299200 chr2A 92.105 152 12 0 3008 3159 34656421 34656270 7.940000e-52 215.0
46 TraesCS6D01G299200 chr4B 89.865 148 14 1 3008 3155 36799087 36798941 4.810000e-44 189.0
47 TraesCS6D01G299200 chr4B 89.189 148 15 1 3008 3155 36700294 36700148 2.240000e-42 183.0
48 TraesCS6D01G299200 chr4B 89.189 148 15 1 3008 3155 36750166 36750020 2.240000e-42 183.0
49 TraesCS6D01G299200 chr3D 89.189 148 14 1 3008 3153 110535683 110535536 2.240000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G299200 chr6D 409662041 409665689 3648 False 6739.000000 6739 100.000000 1 3649 1 chr6D.!!$F1 3648
1 TraesCS6D01G299200 chr6A 555108968 555111499 2531 False 1583.000000 2787 90.173500 799 3649 2 chr6A.!!$F2 2850
2 TraesCS6D01G299200 chr6A 472377599 472378368 769 True 643.000000 643 82.041000 25 784 1 chr6A.!!$R1 759
3 TraesCS6D01G299200 chr6A 123524527 123525311 784 False 588.000000 588 80.407000 12 786 1 chr6A.!!$F1 774
4 TraesCS6D01G299200 chr6B 615636382 615639031 2649 False 1067.666667 1594 89.028667 779 3649 3 chr6B.!!$F2 2870
5 TraesCS6D01G299200 chr6B 115215231 115216161 930 True 617.000000 617 79.469000 1201 2143 1 chr6B.!!$R1 942
6 TraesCS6D01G299200 chr6B 560624671 560625935 1264 False 532.500000 846 86.591500 800 2006 2 chr6B.!!$F1 1206
7 TraesCS6D01G299200 chr1D 43191719 43192530 811 False 1186.000000 1186 93.235000 1 802 1 chr1D.!!$F1 801
8 TraesCS6D01G299200 chr4A 90424298 90425100 802 True 1062.000000 1062 90.785000 1 792 1 chr4A.!!$R1 791
9 TraesCS6D01G299200 chr4A 679699575 679700369 794 False 1033.000000 1033 90.327000 1 785 1 chr4A.!!$F1 784
10 TraesCS6D01G299200 chr1A 320295183 320295969 786 False 981.000000 981 89.322000 1 786 1 chr1A.!!$F1 785
11 TraesCS6D01G299200 chr1A 410222163 410223089 926 False 569.000000 569 78.782000 1201 2143 1 chr1A.!!$F2 942
12 TraesCS6D01G299200 chrUn 49381946 49383214 1268 True 570.000000 918 83.902000 800 2006 2 chrUn.!!$R1 1206
13 TraesCS6D01G299200 chr3B 795777627 795778544 917 False 802.000000 802 82.903000 801 1705 1 chr3B.!!$F2 904
14 TraesCS6D01G299200 chr3B 550394363 550394891 528 True 368.000000 368 80.108000 1201 1730 1 chr3B.!!$R2 529
15 TraesCS6D01G299200 chr3A 110469726 110470489 763 False 651.000000 651 82.292000 33 788 1 chr3A.!!$F1 755
16 TraesCS6D01G299200 chr2B 496454750 496455690 940 True 638.000000 638 79.715000 1201 2143 1 chr2B.!!$R4 942
17 TraesCS6D01G299200 chr2B 69467689 69468627 938 True 636.000000 636 79.715000 1201 2143 1 chr2B.!!$R3 942
18 TraesCS6D01G299200 chr2B 799778044 799778984 940 False 604.000000 604 79.124000 1201 2143 1 chr2B.!!$F1 942
19 TraesCS6D01G299200 chr2B 5788431 5788949 518 True 407.000000 407 81.226000 277 786 1 chr2B.!!$R1 509
20 TraesCS6D01G299200 chr2B 710352398 710353033 635 False 296.500000 339 85.736500 1201 2075 2 chr2B.!!$F2 874
21 TraesCS6D01G299200 chr5D 97376384 97377155 771 True 553.000000 553 79.819000 25 786 1 chr5D.!!$R1 761
22 TraesCS6D01G299200 chr2D 638336304 638337021 717 True 433.000000 433 77.839000 105 814 1 chr2D.!!$R1 709
23 TraesCS6D01G299200 chr7D 503942961 503943666 705 True 425.000000 425 78.752000 1201 1914 1 chr7D.!!$R1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 187 0.179006 GGATCTGCACCAATCTCCCC 60.179 60.000 0.00 0.00 0.00 4.81 F
845 858 1.153745 CAGCCACTGGAGCTACGAC 60.154 63.158 0.00 0.00 38.95 4.34 F
1647 1720 0.107456 ACAAGCTGTGACACAGGGAG 59.893 55.000 31.47 12.23 46.01 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1701 0.107456 CTCCCTGTGTCACAGCTTGT 59.893 55.0 25.00 0.00 44.63 3.16 R
2203 2336 0.036306 ACCCTGGCTGTAAACCTTCG 59.964 55.0 0.00 0.00 0.00 3.79 R
3033 3176 0.031449 TCGTGTCTGAATCGTGCACA 59.969 50.0 18.64 4.45 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 5.822278 TCTGAATGAAGCGTGACTATAGAC 58.178 41.667 6.78 0.17 0.00 2.59
130 132 4.598022 TGAGGATGGCAATTACATTGTGA 58.402 39.130 0.00 0.00 42.20 3.58
172 174 3.490078 GGAAAGCAGTCTACGAGGATCTG 60.490 52.174 0.00 0.00 0.00 2.90
185 187 0.179006 GGATCTGCACCAATCTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
257 259 1.807165 CACGCCACACCGATGAGAG 60.807 63.158 0.00 0.00 0.00 3.20
335 337 2.731572 AGCTTAATGTTGATGCAGCCT 58.268 42.857 0.00 0.00 0.00 4.58
370 372 2.126502 GTTGGAACCATTGCCGCG 60.127 61.111 0.00 0.00 0.00 6.46
845 858 1.153745 CAGCCACTGGAGCTACGAC 60.154 63.158 0.00 0.00 38.95 4.34
894 908 1.533731 GGCTTTTTGATCCGTTCGACA 59.466 47.619 0.00 0.00 0.00 4.35
915 929 3.294493 CACCCACACGCCCCAAAG 61.294 66.667 0.00 0.00 0.00 2.77
945 959 1.536662 AGCCAAGAAGGACCCTCGT 60.537 57.895 0.00 0.00 41.22 4.18
950 964 4.493747 GAAGGACCCTCGTCGGCG 62.494 72.222 1.15 1.15 40.17 6.46
1425 1462 3.731089 TGGAACCGATGTAAGTTCGTTT 58.269 40.909 0.00 0.00 42.67 3.60
1426 1463 3.495377 TGGAACCGATGTAAGTTCGTTTG 59.505 43.478 0.00 0.00 42.67 2.93
1427 1464 3.476181 GAACCGATGTAAGTTCGTTTGC 58.524 45.455 0.00 0.00 33.65 3.68
1428 1465 2.762745 ACCGATGTAAGTTCGTTTGCT 58.237 42.857 0.00 0.00 34.85 3.91
1430 1467 2.734606 CCGATGTAAGTTCGTTTGCTCA 59.265 45.455 0.00 0.00 34.85 4.26
1431 1468 3.423123 CCGATGTAAGTTCGTTTGCTCAC 60.423 47.826 0.00 0.00 34.85 3.51
1434 1471 5.118050 CGATGTAAGTTCGTTTGCTCACTAA 59.882 40.000 0.00 0.00 32.08 2.24
1435 1472 6.346279 CGATGTAAGTTCGTTTGCTCACTAAA 60.346 38.462 0.00 0.00 32.08 1.85
1436 1473 6.854496 TGTAAGTTCGTTTGCTCACTAAAT 57.146 33.333 0.00 0.00 0.00 1.40
1437 1474 6.655062 TGTAAGTTCGTTTGCTCACTAAATG 58.345 36.000 0.00 0.00 0.00 2.32
1438 1475 5.751243 AAGTTCGTTTGCTCACTAAATGT 57.249 34.783 0.00 0.00 0.00 2.71
1441 1478 6.220930 AGTTCGTTTGCTCACTAAATGTCTA 58.779 36.000 0.00 0.00 0.00 2.59
1459 1513 8.684973 AATGTCTAAATGTAGTACGTTCTCAC 57.315 34.615 8.19 6.00 0.00 3.51
1598 1664 8.316497 TGATAATGGAAATGGAAAGGCAATAA 57.684 30.769 0.00 0.00 0.00 1.40
1599 1665 8.203485 TGATAATGGAAATGGAAAGGCAATAAC 58.797 33.333 0.00 0.00 0.00 1.89
1600 1666 6.625532 AATGGAAATGGAAAGGCAATAACT 57.374 33.333 0.00 0.00 0.00 2.24
1635 1708 7.903995 AAATAGAGAGAGAGAAAACAAGCTG 57.096 36.000 0.00 0.00 0.00 4.24
1647 1720 0.107456 ACAAGCTGTGACACAGGGAG 59.893 55.000 31.47 12.23 46.01 4.30
1730 1831 3.181329 TCCACAAGAGCATCCTAGGAAA 58.819 45.455 17.30 0.00 33.66 3.13
1733 1834 4.952335 CCACAAGAGCATCCTAGGAAATTT 59.048 41.667 17.30 1.59 33.66 1.82
1736 1837 7.031975 CACAAGAGCATCCTAGGAAATTTTTC 58.968 38.462 17.30 8.09 33.66 2.29
1821 1935 2.485426 TGGCTTTGATGCTCTCTTTTCG 59.515 45.455 0.00 0.00 0.00 3.46
1975 2104 5.067023 GCTTCTCTTGATGGGGTAATTCAAG 59.933 44.000 5.72 5.72 44.89 3.02
1976 2105 5.779241 TCTCTTGATGGGGTAATTCAAGT 57.221 39.130 10.63 0.00 44.23 3.16
1977 2106 6.884472 TCTCTTGATGGGGTAATTCAAGTA 57.116 37.500 10.63 0.63 44.23 2.24
1978 2107 7.451731 TCTCTTGATGGGGTAATTCAAGTAT 57.548 36.000 10.63 0.00 44.23 2.12
1979 2108 7.872138 TCTCTTGATGGGGTAATTCAAGTATT 58.128 34.615 10.63 0.00 44.23 1.89
1980 2109 7.993183 TCTCTTGATGGGGTAATTCAAGTATTC 59.007 37.037 10.63 0.00 44.23 1.75
1981 2110 7.638444 TCTTGATGGGGTAATTCAAGTATTCA 58.362 34.615 10.63 0.00 44.23 2.57
1982 2111 8.112822 TCTTGATGGGGTAATTCAAGTATTCAA 58.887 33.333 10.63 0.00 44.23 2.69
2007 2136 5.689383 TCCAACTGAAACATTTACTCAGC 57.311 39.130 0.00 0.00 40.23 4.26
2010 2139 5.009010 CCAACTGAAACATTTACTCAGCTGT 59.991 40.000 14.67 0.00 40.23 4.40
2030 2160 7.653713 CAGCTGTATAAGAATTCGTCCAGTAAT 59.346 37.037 5.25 0.00 0.00 1.89
2038 2168 5.582665 AGAATTCGTCCAGTAATTCAGAAGC 59.417 40.000 9.66 0.00 42.14 3.86
2044 2174 7.103641 TCGTCCAGTAATTCAGAAGCTTTAAT 58.896 34.615 0.00 0.00 0.00 1.40
2046 2176 8.879759 CGTCCAGTAATTCAGAAGCTTTAATTA 58.120 33.333 0.00 9.08 0.00 1.40
2072 2205 7.985184 AGTGTAGACTGTAATCACTTCAAACAA 59.015 33.333 0.00 0.00 36.17 2.83
2094 2227 3.127425 ACAAGACTGGCCTGTTTCTAC 57.873 47.619 17.25 3.51 0.00 2.59
2101 2234 2.936498 CTGGCCTGTTTCTACCATAACG 59.064 50.000 3.32 0.00 0.00 3.18
2112 2245 0.389391 ACCATAACGCTGATCCTCCG 59.611 55.000 0.00 0.00 0.00 4.63
2151 2284 5.475719 CAAGAGGTACATGGACTTCGTTAA 58.524 41.667 14.06 0.00 31.04 2.01
2203 2336 3.452627 TCCTTGGGATAGAAGCTTCACTC 59.547 47.826 27.57 21.10 0.00 3.51
2205 2338 2.735151 TGGGATAGAAGCTTCACTCGA 58.265 47.619 27.57 10.79 0.00 4.04
2206 2339 3.096852 TGGGATAGAAGCTTCACTCGAA 58.903 45.455 27.57 11.88 0.00 3.71
2226 2359 2.345560 AGGTTTACAGCCAGGGTAAGT 58.654 47.619 0.00 0.00 32.76 2.24
2227 2360 2.039879 AGGTTTACAGCCAGGGTAAGTG 59.960 50.000 0.00 0.00 32.76 3.16
2228 2361 1.810755 GTTTACAGCCAGGGTAAGTGC 59.189 52.381 0.00 0.00 32.76 4.40
2229 2362 1.358152 TTACAGCCAGGGTAAGTGCT 58.642 50.000 0.00 0.00 33.52 4.40
2230 2363 4.308526 CAGCCAGGGTAAGTGCTG 57.691 61.111 0.00 0.00 44.43 4.41
2234 2367 1.178534 GCCAGGGTAAGTGCTGCAAA 61.179 55.000 2.77 0.00 0.00 3.68
2244 2377 4.405116 AAGTGCTGCAAAATTCTCCAAA 57.595 36.364 2.77 0.00 0.00 3.28
2245 2378 3.721035 AGTGCTGCAAAATTCTCCAAAC 58.279 40.909 2.77 0.00 0.00 2.93
2246 2379 3.385755 AGTGCTGCAAAATTCTCCAAACT 59.614 39.130 2.77 0.00 0.00 2.66
2250 2383 5.068987 TGCTGCAAAATTCTCCAAACTAAGT 59.931 36.000 0.00 0.00 0.00 2.24
2251 2384 6.264292 TGCTGCAAAATTCTCCAAACTAAGTA 59.736 34.615 0.00 0.00 0.00 2.24
2255 2388 8.349983 TGCAAAATTCTCCAAACTAAGTAACTC 58.650 33.333 0.00 0.00 0.00 3.01
2260 2393 8.974060 ATTCTCCAAACTAAGTAACTCAAACA 57.026 30.769 0.00 0.00 0.00 2.83
2275 2408 4.060205 CTCAAACAATTTCCCTTGGCAAG 58.940 43.478 20.31 20.31 0.00 4.01
2277 2410 3.751479 AACAATTTCCCTTGGCAAGTC 57.249 42.857 24.57 0.00 0.00 3.01
2278 2411 2.962859 ACAATTTCCCTTGGCAAGTCT 58.037 42.857 24.57 2.86 0.00 3.24
2280 2413 3.160269 CAATTTCCCTTGGCAAGTCTCT 58.840 45.455 24.57 3.90 0.00 3.10
2281 2414 2.276732 TTTCCCTTGGCAAGTCTCTG 57.723 50.000 24.57 9.67 0.00 3.35
2282 2415 1.140312 TTCCCTTGGCAAGTCTCTGT 58.860 50.000 24.57 0.00 0.00 3.41
2284 2417 1.494721 TCCCTTGGCAAGTCTCTGTTT 59.505 47.619 24.57 0.00 0.00 2.83
2285 2418 1.882623 CCCTTGGCAAGTCTCTGTTTC 59.117 52.381 24.57 0.00 0.00 2.78
2286 2419 2.487986 CCCTTGGCAAGTCTCTGTTTCT 60.488 50.000 24.57 0.00 0.00 2.52
2287 2420 2.810852 CCTTGGCAAGTCTCTGTTTCTC 59.189 50.000 24.57 0.00 0.00 2.87
2290 2430 2.435805 TGGCAAGTCTCTGTTTCTCTGT 59.564 45.455 0.00 0.00 0.00 3.41
2296 2436 7.255277 GGCAAGTCTCTGTTTCTCTGTTTTAAT 60.255 37.037 0.00 0.00 0.00 1.40
2414 2554 7.521529 CGAATGAAGTGAAGCTGAAAGAAATA 58.478 34.615 0.00 0.00 34.07 1.40
2465 2605 5.664294 ACAATTGCTTGCAAGATAATCCA 57.336 34.783 30.39 13.96 35.69 3.41
2473 2613 6.538742 TGCTTGCAAGATAATCCAGTAGTAAC 59.461 38.462 30.39 6.25 0.00 2.50
2652 2792 6.265196 TCATGCACTAACCTTGTCTTGAAAAT 59.735 34.615 0.00 0.00 0.00 1.82
2655 2795 6.096141 TGCACTAACCTTGTCTTGAAAATTCA 59.904 34.615 0.00 0.00 34.92 2.57
2756 2897 0.807496 AAGCGCAATTCTTCTCAGCC 59.193 50.000 11.47 0.00 0.00 4.85
2766 2908 0.695347 CTTCTCAGCCCCCTCTTTGT 59.305 55.000 0.00 0.00 0.00 2.83
2820 2962 2.972348 ACTTCTGTGGGAGGAACTGTA 58.028 47.619 0.00 0.00 41.55 2.74
2843 2986 3.275617 AAACTCAGTACACAGTTGCCA 57.724 42.857 9.54 0.00 33.01 4.92
2862 3005 1.142060 CACTACAGGTGGGGTGACAAA 59.858 52.381 0.00 0.00 41.90 2.83
2893 3036 8.578308 TTTCTTCAAATGCAAACAAGATACAG 57.422 30.769 0.00 0.00 0.00 2.74
2895 3038 7.140705 TCTTCAAATGCAAACAAGATACAGTG 58.859 34.615 0.00 0.00 0.00 3.66
2961 3104 2.099263 TCCTTGTCTGCAGTATACGCTC 59.901 50.000 14.67 10.09 0.00 5.03
2962 3105 2.159240 CCTTGTCTGCAGTATACGCTCA 60.159 50.000 14.67 11.78 0.00 4.26
3006 3149 0.318955 ATGGCAGCGTTTTTGCAGTC 60.319 50.000 0.00 0.00 43.28 3.51
3007 3150 2.010817 GGCAGCGTTTTTGCAGTCG 61.011 57.895 0.00 0.00 43.28 4.18
3008 3151 1.010125 GCAGCGTTTTTGCAGTCGA 60.010 52.632 6.20 0.00 41.17 4.20
3009 3152 0.993746 GCAGCGTTTTTGCAGTCGAG 60.994 55.000 0.00 0.00 41.17 4.04
3010 3153 0.304705 CAGCGTTTTTGCAGTCGAGT 59.695 50.000 0.00 0.00 37.31 4.18
3011 3154 1.525197 CAGCGTTTTTGCAGTCGAGTA 59.475 47.619 0.00 0.00 37.31 2.59
3012 3155 1.792949 AGCGTTTTTGCAGTCGAGTAG 59.207 47.619 0.00 0.00 37.31 2.57
3013 3156 1.525619 GCGTTTTTGCAGTCGAGTAGT 59.474 47.619 0.00 0.00 34.15 2.73
3014 3157 2.659291 GCGTTTTTGCAGTCGAGTAGTG 60.659 50.000 0.00 0.00 34.15 2.74
3021 3164 2.851805 CAGTCGAGTAGTGCTATGCA 57.148 50.000 0.00 0.00 35.60 3.96
3030 3173 2.966590 TGCTATGCACACGACGGA 59.033 55.556 0.00 0.00 31.71 4.69
3031 3174 1.515487 TGCTATGCACACGACGGAT 59.485 52.632 0.00 0.00 31.71 4.18
3032 3175 0.108377 TGCTATGCACACGACGGATT 60.108 50.000 0.00 0.00 31.71 3.01
3033 3176 1.006832 GCTATGCACACGACGGATTT 58.993 50.000 0.00 0.00 0.00 2.17
3034 3177 1.267532 GCTATGCACACGACGGATTTG 60.268 52.381 0.00 0.00 0.00 2.32
3035 3178 1.999735 CTATGCACACGACGGATTTGT 59.000 47.619 0.00 0.00 0.00 2.83
3036 3179 0.516877 ATGCACACGACGGATTTGTG 59.483 50.000 10.91 10.91 44.49 3.33
3037 3180 4.818417 CACACGACGGATTTGTGC 57.182 55.556 0.00 0.00 42.88 4.57
3038 3181 1.938125 CACACGACGGATTTGTGCA 59.062 52.632 0.00 0.00 42.88 4.57
3039 3182 0.384230 CACACGACGGATTTGTGCAC 60.384 55.000 10.75 10.75 42.88 4.57
3040 3183 1.154672 CACGACGGATTTGTGCACG 60.155 57.895 13.13 0.87 32.58 5.34
3041 3184 1.300311 ACGACGGATTTGTGCACGA 60.300 52.632 13.13 7.71 0.00 4.35
3042 3185 0.669318 ACGACGGATTTGTGCACGAT 60.669 50.000 13.13 8.85 0.00 3.73
3043 3186 0.442310 CGACGGATTTGTGCACGATT 59.558 50.000 13.13 6.79 0.00 3.34
3044 3187 1.526986 CGACGGATTTGTGCACGATTC 60.527 52.381 17.23 17.23 0.00 2.52
3045 3188 1.463056 GACGGATTTGTGCACGATTCA 59.537 47.619 23.75 5.50 0.00 2.57
3046 3189 1.464608 ACGGATTTGTGCACGATTCAG 59.535 47.619 23.75 22.18 0.00 3.02
3047 3190 1.731709 CGGATTTGTGCACGATTCAGA 59.268 47.619 23.75 4.82 0.00 3.27
3048 3191 2.474526 CGGATTTGTGCACGATTCAGAC 60.475 50.000 23.75 10.74 0.00 3.51
3049 3192 2.483877 GGATTTGTGCACGATTCAGACA 59.516 45.455 23.75 3.49 0.00 3.41
3050 3193 3.482786 GATTTGTGCACGATTCAGACAC 58.517 45.455 19.58 0.00 0.00 3.67
3051 3194 0.858583 TTGTGCACGATTCAGACACG 59.141 50.000 13.13 0.00 33.96 4.49
3052 3195 0.031449 TGTGCACGATTCAGACACGA 59.969 50.000 13.13 0.00 33.96 4.35
3053 3196 0.435008 GTGCACGATTCAGACACGAC 59.565 55.000 0.00 0.00 0.00 4.34
3054 3197 0.031449 TGCACGATTCAGACACGACA 59.969 50.000 0.00 0.00 0.00 4.35
3055 3198 0.710567 GCACGATTCAGACACGACAG 59.289 55.000 0.00 0.00 0.00 3.51
3056 3199 1.340658 CACGATTCAGACACGACAGG 58.659 55.000 0.00 0.00 0.00 4.00
3057 3200 0.959553 ACGATTCAGACACGACAGGT 59.040 50.000 0.00 0.00 0.00 4.00
3058 3201 1.068472 ACGATTCAGACACGACAGGTC 60.068 52.381 0.00 0.00 35.50 3.85
3059 3202 1.068541 CGATTCAGACACGACAGGTCA 60.069 52.381 0.00 0.00 37.74 4.02
3060 3203 2.416027 CGATTCAGACACGACAGGTCAT 60.416 50.000 0.00 0.00 37.74 3.06
3061 3204 2.724977 TTCAGACACGACAGGTCATC 57.275 50.000 0.00 0.00 37.74 2.92
3062 3205 1.911057 TCAGACACGACAGGTCATCT 58.089 50.000 0.00 0.00 37.74 2.90
3063 3206 3.067684 TCAGACACGACAGGTCATCTA 57.932 47.619 0.00 0.00 37.74 1.98
3064 3207 3.010420 TCAGACACGACAGGTCATCTAG 58.990 50.000 0.00 0.00 37.74 2.43
3065 3208 2.750166 CAGACACGACAGGTCATCTAGT 59.250 50.000 0.00 0.00 37.74 2.57
3066 3209 3.011119 AGACACGACAGGTCATCTAGTC 58.989 50.000 0.00 0.00 37.74 2.59
3067 3210 2.093106 ACACGACAGGTCATCTAGTCC 58.907 52.381 0.00 0.00 0.00 3.85
3068 3211 2.092323 CACGACAGGTCATCTAGTCCA 58.908 52.381 0.00 0.00 0.00 4.02
3069 3212 2.690497 CACGACAGGTCATCTAGTCCAT 59.310 50.000 0.00 0.00 0.00 3.41
3070 3213 3.131223 CACGACAGGTCATCTAGTCCATT 59.869 47.826 0.00 0.00 0.00 3.16
3071 3214 3.131223 ACGACAGGTCATCTAGTCCATTG 59.869 47.826 0.00 0.00 0.00 2.82
3072 3215 3.491619 CGACAGGTCATCTAGTCCATTGG 60.492 52.174 0.00 0.00 0.00 3.16
3073 3216 3.706594 GACAGGTCATCTAGTCCATTGGA 59.293 47.826 0.00 0.00 0.00 3.53
3074 3217 4.302067 ACAGGTCATCTAGTCCATTGGAT 58.698 43.478 9.01 1.04 32.73 3.41
3075 3218 4.723789 ACAGGTCATCTAGTCCATTGGATT 59.276 41.667 9.01 7.35 32.73 3.01
3076 3219 5.061853 CAGGTCATCTAGTCCATTGGATTG 58.938 45.833 9.01 2.70 32.73 2.67
3077 3220 3.817647 GGTCATCTAGTCCATTGGATTGC 59.182 47.826 9.01 0.00 32.73 3.56
3078 3221 3.817647 GTCATCTAGTCCATTGGATTGCC 59.182 47.826 9.01 0.00 32.73 4.52
3079 3222 3.718434 TCATCTAGTCCATTGGATTGCCT 59.282 43.478 9.01 3.76 32.73 4.75
3080 3223 3.845781 TCTAGTCCATTGGATTGCCTC 57.154 47.619 9.01 0.00 32.73 4.70
3081 3224 3.114606 TCTAGTCCATTGGATTGCCTCA 58.885 45.455 9.01 0.00 32.73 3.86
3082 3225 3.718434 TCTAGTCCATTGGATTGCCTCAT 59.282 43.478 9.01 0.00 32.73 2.90
3083 3226 3.393426 AGTCCATTGGATTGCCTCATT 57.607 42.857 9.01 0.00 32.73 2.57
3084 3227 3.716431 AGTCCATTGGATTGCCTCATTT 58.284 40.909 9.01 0.00 32.73 2.32
3085 3228 3.703052 AGTCCATTGGATTGCCTCATTTC 59.297 43.478 9.01 0.00 32.73 2.17
3086 3229 3.703052 GTCCATTGGATTGCCTCATTTCT 59.297 43.478 9.01 0.00 32.73 2.52
3087 3230 4.161001 GTCCATTGGATTGCCTCATTTCTT 59.839 41.667 9.01 0.00 32.73 2.52
3088 3231 4.778958 TCCATTGGATTGCCTCATTTCTTT 59.221 37.500 0.00 0.00 34.31 2.52
3089 3232 5.957168 TCCATTGGATTGCCTCATTTCTTTA 59.043 36.000 0.00 0.00 34.31 1.85
3090 3233 6.440010 TCCATTGGATTGCCTCATTTCTTTAA 59.560 34.615 0.00 0.00 34.31 1.52
3091 3234 7.126115 TCCATTGGATTGCCTCATTTCTTTAAT 59.874 33.333 0.00 0.00 34.31 1.40
3092 3235 7.440255 CCATTGGATTGCCTCATTTCTTTAATC 59.560 37.037 0.00 0.00 34.31 1.75
3093 3236 7.722949 TTGGATTGCCTCATTTCTTTAATCT 57.277 32.000 0.00 0.00 34.31 2.40
3094 3237 7.104043 TGGATTGCCTCATTTCTTTAATCTG 57.896 36.000 0.00 0.00 34.31 2.90
3095 3238 6.664816 TGGATTGCCTCATTTCTTTAATCTGT 59.335 34.615 0.00 0.00 34.31 3.41
3096 3239 6.976925 GGATTGCCTCATTTCTTTAATCTGTG 59.023 38.462 0.00 0.00 0.00 3.66
3097 3240 6.899393 TTGCCTCATTTCTTTAATCTGTGT 57.101 33.333 0.00 0.00 0.00 3.72
3098 3241 6.258230 TGCCTCATTTCTTTAATCTGTGTG 57.742 37.500 0.00 0.00 0.00 3.82
3099 3242 5.183713 TGCCTCATTTCTTTAATCTGTGTGG 59.816 40.000 0.00 0.00 0.00 4.17
3100 3243 5.644644 CCTCATTTCTTTAATCTGTGTGGC 58.355 41.667 0.00 0.00 0.00 5.01
3101 3244 5.416952 CCTCATTTCTTTAATCTGTGTGGCT 59.583 40.000 0.00 0.00 0.00 4.75
3102 3245 6.071728 CCTCATTTCTTTAATCTGTGTGGCTT 60.072 38.462 0.00 0.00 0.00 4.35
3103 3246 6.913170 TCATTTCTTTAATCTGTGTGGCTTC 58.087 36.000 0.00 0.00 0.00 3.86
3104 3247 6.716628 TCATTTCTTTAATCTGTGTGGCTTCT 59.283 34.615 0.00 0.00 0.00 2.85
3105 3248 7.882791 TCATTTCTTTAATCTGTGTGGCTTCTA 59.117 33.333 0.00 0.00 0.00 2.10
3106 3249 8.514594 CATTTCTTTAATCTGTGTGGCTTCTAA 58.485 33.333 0.00 0.00 0.00 2.10
3107 3250 8.635765 TTTCTTTAATCTGTGTGGCTTCTAAT 57.364 30.769 0.00 0.00 0.00 1.73
3108 3251 7.849804 TCTTTAATCTGTGTGGCTTCTAATC 57.150 36.000 0.00 0.00 0.00 1.75
3109 3252 7.394016 TCTTTAATCTGTGTGGCTTCTAATCA 58.606 34.615 0.00 0.00 0.00 2.57
3110 3253 8.049117 TCTTTAATCTGTGTGGCTTCTAATCAT 58.951 33.333 0.00 0.00 0.00 2.45
3111 3254 7.558161 TTAATCTGTGTGGCTTCTAATCATG 57.442 36.000 0.00 0.00 0.00 3.07
3112 3255 4.558226 TCTGTGTGGCTTCTAATCATGT 57.442 40.909 0.00 0.00 0.00 3.21
3113 3256 4.507710 TCTGTGTGGCTTCTAATCATGTC 58.492 43.478 0.00 0.00 0.00 3.06
3114 3257 3.261580 TGTGTGGCTTCTAATCATGTCG 58.738 45.455 0.00 0.00 0.00 4.35
3115 3258 3.262420 GTGTGGCTTCTAATCATGTCGT 58.738 45.455 0.00 0.00 0.00 4.34
3116 3259 3.062639 GTGTGGCTTCTAATCATGTCGTG 59.937 47.826 0.00 0.00 0.00 4.35
3117 3260 2.030946 GTGGCTTCTAATCATGTCGTGC 59.969 50.000 0.00 0.00 0.00 5.34
3118 3261 2.279741 GGCTTCTAATCATGTCGTGCA 58.720 47.619 0.00 0.00 0.00 4.57
3119 3262 2.030946 GGCTTCTAATCATGTCGTGCAC 59.969 50.000 6.82 6.82 0.00 4.57
3120 3263 2.672874 GCTTCTAATCATGTCGTGCACA 59.327 45.455 18.64 0.81 40.18 4.57
3121 3264 3.125146 GCTTCTAATCATGTCGTGCACAA 59.875 43.478 18.64 0.00 38.97 3.33
3122 3265 4.378356 GCTTCTAATCATGTCGTGCACAAA 60.378 41.667 18.64 0.46 38.97 2.83
3123 3266 5.674569 GCTTCTAATCATGTCGTGCACAAAT 60.675 40.000 18.64 3.78 38.97 2.32
3124 3267 5.469373 TCTAATCATGTCGTGCACAAATC 57.531 39.130 18.64 4.23 38.97 2.17
3125 3268 5.178061 TCTAATCATGTCGTGCACAAATCT 58.822 37.500 18.64 0.00 38.97 2.40
3126 3269 4.771590 AATCATGTCGTGCACAAATCTT 57.228 36.364 18.64 0.00 38.97 2.40
3127 3270 3.811722 TCATGTCGTGCACAAATCTTC 57.188 42.857 18.64 0.00 38.97 2.87
3128 3271 2.483877 TCATGTCGTGCACAAATCTTCC 59.516 45.455 18.64 0.00 38.97 3.46
3129 3272 1.960417 TGTCGTGCACAAATCTTCCA 58.040 45.000 18.64 0.00 29.30 3.53
3130 3273 2.503331 TGTCGTGCACAAATCTTCCAT 58.497 42.857 18.64 0.00 29.30 3.41
3131 3274 2.483877 TGTCGTGCACAAATCTTCCATC 59.516 45.455 18.64 0.00 29.30 3.51
3132 3275 2.483877 GTCGTGCACAAATCTTCCATCA 59.516 45.455 18.64 0.00 0.00 3.07
3133 3276 3.058293 GTCGTGCACAAATCTTCCATCAA 60.058 43.478 18.64 0.00 0.00 2.57
3134 3277 3.058293 TCGTGCACAAATCTTCCATCAAC 60.058 43.478 18.64 0.00 0.00 3.18
3135 3278 3.304592 CGTGCACAAATCTTCCATCAACA 60.305 43.478 18.64 0.00 0.00 3.33
3136 3279 4.616604 CGTGCACAAATCTTCCATCAACAT 60.617 41.667 18.64 0.00 0.00 2.71
3137 3280 4.860907 GTGCACAAATCTTCCATCAACATC 59.139 41.667 13.17 0.00 0.00 3.06
3138 3281 4.100529 GCACAAATCTTCCATCAACATCG 58.899 43.478 0.00 0.00 0.00 3.84
3139 3282 4.379813 GCACAAATCTTCCATCAACATCGT 60.380 41.667 0.00 0.00 0.00 3.73
3140 3283 5.090757 CACAAATCTTCCATCAACATCGTG 58.909 41.667 0.00 0.00 0.00 4.35
3141 3284 4.761739 ACAAATCTTCCATCAACATCGTGT 59.238 37.500 0.00 0.00 0.00 4.49
3142 3285 4.952262 AATCTTCCATCAACATCGTGTG 57.048 40.909 0.00 0.00 0.00 3.82
3143 3286 3.401033 TCTTCCATCAACATCGTGTGT 57.599 42.857 0.00 0.00 44.84 3.72
3144 3287 4.529109 TCTTCCATCAACATCGTGTGTA 57.471 40.909 0.00 0.00 41.14 2.90
3145 3288 4.242475 TCTTCCATCAACATCGTGTGTAC 58.758 43.478 0.00 0.00 41.14 2.90
3146 3289 3.669251 TCCATCAACATCGTGTGTACA 57.331 42.857 0.00 0.00 41.14 2.90
3147 3290 3.584834 TCCATCAACATCGTGTGTACAG 58.415 45.455 0.00 0.00 41.14 2.74
3148 3291 2.094258 CCATCAACATCGTGTGTACAGC 59.906 50.000 0.00 0.00 41.14 4.40
3149 3292 2.517650 TCAACATCGTGTGTACAGCA 57.482 45.000 0.00 0.00 41.14 4.41
3160 3303 2.372350 GTGTACAGCACTTTCGTTTGC 58.628 47.619 0.00 0.00 44.41 3.68
3161 3304 2.010497 TGTACAGCACTTTCGTTTGCA 58.990 42.857 0.00 0.00 41.48 4.08
3162 3305 2.616376 TGTACAGCACTTTCGTTTGCAT 59.384 40.909 0.00 0.00 41.48 3.96
3163 3306 2.869233 ACAGCACTTTCGTTTGCATT 57.131 40.000 0.00 0.00 41.48 3.56
3164 3307 3.163630 ACAGCACTTTCGTTTGCATTT 57.836 38.095 0.00 0.00 41.48 2.32
3165 3308 3.115554 ACAGCACTTTCGTTTGCATTTC 58.884 40.909 0.00 0.00 41.48 2.17
3208 3351 4.929819 AAACTACCACATTCCAACCAAC 57.070 40.909 0.00 0.00 0.00 3.77
3210 3353 2.167662 CTACCACATTCCAACCAACCC 58.832 52.381 0.00 0.00 0.00 4.11
3213 3356 1.480312 CCACATTCCAACCAACCCTGA 60.480 52.381 0.00 0.00 0.00 3.86
3214 3357 2.528564 CACATTCCAACCAACCCTGAT 58.471 47.619 0.00 0.00 0.00 2.90
3225 3368 3.650942 ACCAACCCTGATGAGAAACTACA 59.349 43.478 0.00 0.00 0.00 2.74
3267 3410 5.874261 AGAGAACTACCACTCTACGTCTAAC 59.126 44.000 0.00 0.00 40.98 2.34
3524 3667 6.568081 GCATCTATATCAAGCAAGCCAGAAAG 60.568 42.308 0.00 0.00 0.00 2.62
3592 3735 9.681062 ACAAGTAAACATATATTGGCTTGTACT 57.319 29.630 11.92 0.00 42.00 2.73
3593 3736 9.935682 CAAGTAAACATATATTGGCTTGTACTG 57.064 33.333 0.00 0.00 0.00 2.74
3594 3737 9.681062 AAGTAAACATATATTGGCTTGTACTGT 57.319 29.630 0.00 0.00 0.00 3.55
3636 3779 2.158871 TGGATAGGAAATACGCACCACC 60.159 50.000 0.00 0.00 0.00 4.61
3637 3780 2.158871 GGATAGGAAATACGCACCACCA 60.159 50.000 0.00 0.00 0.00 4.17
3638 3781 2.389962 TAGGAAATACGCACCACCAC 57.610 50.000 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 5.593909 TGTAATTGCCATCCTCATAAACTGG 59.406 40.000 0.00 0.00 0.00 4.00
130 132 1.952296 CTCTTTGCACTCCAAACAGCT 59.048 47.619 0.00 0.00 38.46 4.24
172 174 0.038166 TTGACAGGGGAGATTGGTGC 59.962 55.000 0.00 0.00 0.00 5.01
257 259 1.852067 CGTTGTGGTTGGGTGCTAGC 61.852 60.000 8.10 8.10 0.00 3.42
335 337 1.984570 CCCCTCGTCTCTCTGCCAA 60.985 63.158 0.00 0.00 0.00 4.52
370 372 1.001406 CCATTCTCGTCCCTGGCTATC 59.999 57.143 0.00 0.00 0.00 2.08
482 484 3.165875 TCTGAAGTTGGAGATCTTCGGT 58.834 45.455 0.00 0.00 43.47 4.69
608 619 8.776470 CCTATTTTCATGAACAAAATTGCAAGT 58.224 29.630 7.89 0.00 35.52 3.16
889 903 2.502093 GTGTGGGTGGTGTGTCGA 59.498 61.111 0.00 0.00 0.00 4.20
915 929 0.670162 TCTTGGCTGCTGCTGTTTTC 59.330 50.000 15.64 0.00 39.59 2.29
950 964 3.123620 CTTGCTCGCCTGACTGCC 61.124 66.667 0.00 0.00 0.00 4.85
1425 1462 9.582431 GTACTACATTTAGACATTTAGTGAGCA 57.418 33.333 0.00 0.00 0.00 4.26
1426 1463 8.744011 CGTACTACATTTAGACATTTAGTGAGC 58.256 37.037 0.00 0.00 0.00 4.26
1427 1464 9.784680 ACGTACTACATTTAGACATTTAGTGAG 57.215 33.333 0.00 0.00 0.00 3.51
1434 1471 8.521176 AGTGAGAACGTACTACATTTAGACATT 58.479 33.333 0.00 0.00 0.00 2.71
1435 1472 8.053026 AGTGAGAACGTACTACATTTAGACAT 57.947 34.615 0.00 0.00 0.00 3.06
1436 1473 7.444629 AGTGAGAACGTACTACATTTAGACA 57.555 36.000 0.00 0.00 0.00 3.41
1437 1474 8.739649 AAAGTGAGAACGTACTACATTTAGAC 57.260 34.615 0.00 0.00 0.00 2.59
1441 1478 9.754382 TCTTTAAAGTGAGAACGTACTACATTT 57.246 29.630 14.74 0.00 0.00 2.32
1459 1513 6.803807 GCTTCAGTGCTATGGTTTCTTTAAAG 59.196 38.462 9.04 9.04 0.00 1.85
1614 1686 5.536538 TCACAGCTTGTTTTCTCTCTCTCTA 59.463 40.000 0.00 0.00 0.00 2.43
1628 1701 0.107456 CTCCCTGTGTCACAGCTTGT 59.893 55.000 25.00 0.00 44.63 3.16
1635 1708 2.898705 CTCAATAGCTCCCTGTGTCAC 58.101 52.381 0.00 0.00 0.00 3.67
1647 1720 7.969387 TGTTATTTTCATTTCGCTCAATAGC 57.031 32.000 0.00 0.00 45.86 2.97
1657 1730 9.393249 TGACGTTGAGATTGTTATTTTCATTTC 57.607 29.630 0.00 0.00 0.00 2.17
1821 1935 4.803098 ACACACCAGTTAGACCATAGAC 57.197 45.455 0.00 0.00 0.00 2.59
1975 2104 8.816640 AAATGTTTCAGTTGGATGTTGAATAC 57.183 30.769 0.00 0.00 31.54 1.89
1976 2105 9.906660 GTAAATGTTTCAGTTGGATGTTGAATA 57.093 29.630 0.00 0.00 31.54 1.75
1977 2106 8.641541 AGTAAATGTTTCAGTTGGATGTTGAAT 58.358 29.630 0.00 0.00 31.54 2.57
1978 2107 8.006298 AGTAAATGTTTCAGTTGGATGTTGAA 57.994 30.769 0.00 0.00 0.00 2.69
1979 2108 7.284261 TGAGTAAATGTTTCAGTTGGATGTTGA 59.716 33.333 0.00 0.00 0.00 3.18
1980 2109 7.424803 TGAGTAAATGTTTCAGTTGGATGTTG 58.575 34.615 0.00 0.00 0.00 3.33
1981 2110 7.581213 TGAGTAAATGTTTCAGTTGGATGTT 57.419 32.000 0.00 0.00 0.00 2.71
1982 2111 6.294176 GCTGAGTAAATGTTTCAGTTGGATGT 60.294 38.462 3.07 0.00 40.29 3.06
2007 2136 9.529325 TGAATTACTGGACGAATTCTTATACAG 57.471 33.333 3.52 7.74 40.94 2.74
2020 2150 6.721571 TTAAAGCTTCTGAATTACTGGACG 57.278 37.500 0.00 0.00 0.00 4.79
2030 2160 9.424319 CAGTCTACACTAATTAAAGCTTCTGAA 57.576 33.333 0.00 0.00 0.00 3.02
2044 2174 9.472361 GTTTGAAGTGATTACAGTCTACACTAA 57.528 33.333 0.00 0.00 40.23 2.24
2046 2176 7.497595 TGTTTGAAGTGATTACAGTCTACACT 58.502 34.615 0.00 0.00 42.40 3.55
2061 2194 4.327087 GCCAGTCTTGTTTTGTTTGAAGTG 59.673 41.667 0.00 0.00 0.00 3.16
2072 2205 3.018423 AGAAACAGGCCAGTCTTGTTT 57.982 42.857 17.29 17.29 35.70 2.83
2094 2227 0.389391 ACGGAGGATCAGCGTTATGG 59.611 55.000 0.00 0.00 36.25 2.74
2101 2234 3.385577 GACAAATCTACGGAGGATCAGC 58.614 50.000 0.00 0.00 36.25 4.26
2112 2245 4.995487 ACCTCTTGGTTTCGACAAATCTAC 59.005 41.667 0.00 0.00 46.05 2.59
2151 2284 2.309755 TCCTTTGCTTGTGATCCTGGAT 59.690 45.455 9.42 9.42 0.00 3.41
2203 2336 0.036306 ACCCTGGCTGTAAACCTTCG 59.964 55.000 0.00 0.00 0.00 3.79
2205 2338 2.714793 ACTTACCCTGGCTGTAAACCTT 59.285 45.455 0.00 0.00 0.00 3.50
2206 2339 2.039879 CACTTACCCTGGCTGTAAACCT 59.960 50.000 0.00 0.00 0.00 3.50
2226 2359 5.068987 ACTTAGTTTGGAGAATTTTGCAGCA 59.931 36.000 0.00 0.00 0.00 4.41
2227 2360 5.532557 ACTTAGTTTGGAGAATTTTGCAGC 58.467 37.500 0.00 0.00 0.00 5.25
2228 2361 8.352942 AGTTACTTAGTTTGGAGAATTTTGCAG 58.647 33.333 0.00 0.00 0.00 4.41
2229 2362 8.232913 AGTTACTTAGTTTGGAGAATTTTGCA 57.767 30.769 0.00 0.00 0.00 4.08
2230 2363 8.349983 TGAGTTACTTAGTTTGGAGAATTTTGC 58.650 33.333 0.00 0.00 0.00 3.68
2234 2367 9.403583 TGTTTGAGTTACTTAGTTTGGAGAATT 57.596 29.630 0.00 0.00 0.00 2.17
2244 2377 8.630037 CAAGGGAAATTGTTTGAGTTACTTAGT 58.370 33.333 0.00 0.00 0.00 2.24
2245 2378 8.082242 CCAAGGGAAATTGTTTGAGTTACTTAG 58.918 37.037 0.00 0.00 0.00 2.18
2246 2379 7.470841 GCCAAGGGAAATTGTTTGAGTTACTTA 60.471 37.037 0.00 0.00 0.00 2.24
2250 2383 4.651503 TGCCAAGGGAAATTGTTTGAGTTA 59.348 37.500 0.00 0.00 0.00 2.24
2251 2384 3.454082 TGCCAAGGGAAATTGTTTGAGTT 59.546 39.130 0.00 0.00 0.00 3.01
2255 2388 3.807553 ACTTGCCAAGGGAAATTGTTTG 58.192 40.909 9.64 0.00 0.00 2.93
2260 2393 3.160269 CAGAGACTTGCCAAGGGAAATT 58.840 45.455 9.64 0.00 0.00 1.82
2319 2459 4.641989 CCCAGGGTATCTGTTCAGATTTTG 59.358 45.833 18.43 12.03 41.83 2.44
2320 2460 4.325344 CCCCAGGGTATCTGTTCAGATTTT 60.325 45.833 18.43 0.87 41.83 1.82
2345 2485 3.383505 GTCCCATTGGGTTAAATAGTGGC 59.616 47.826 21.31 0.00 44.74 5.01
2414 2554 6.784031 AGAGACATTGAACCTACCATTCTTT 58.216 36.000 0.00 0.00 0.00 2.52
2492 2632 4.599041 TCCCTGTGGTTCATGGAAAATAG 58.401 43.478 0.00 0.00 37.78 1.73
2494 2634 3.434309 CTCCCTGTGGTTCATGGAAAAT 58.566 45.455 0.00 0.00 39.63 1.82
2495 2635 2.490718 CCTCCCTGTGGTTCATGGAAAA 60.491 50.000 0.00 0.00 39.63 2.29
2500 2640 1.538047 CAACCTCCCTGTGGTTCATG 58.462 55.000 0.00 0.00 45.05 3.07
2503 2643 1.603739 GCCAACCTCCCTGTGGTTC 60.604 63.158 0.00 0.00 45.05 3.62
2506 2646 1.077265 ATTGCCAACCTCCCTGTGG 59.923 57.895 0.00 0.00 0.00 4.17
2540 2680 3.501828 TCACAGACGCTTGCACAATAAAT 59.498 39.130 0.00 0.00 0.00 1.40
2693 2834 7.928167 TGATCTGATGTGCTACACCTTTATTAG 59.072 37.037 0.00 0.00 32.73 1.73
2756 2897 3.243907 CGATAGAGCCTTACAAAGAGGGG 60.244 52.174 0.00 0.00 34.29 4.79
2766 2908 5.126061 AGTTTTCGTTACCGATAGAGCCTTA 59.874 40.000 0.00 0.00 43.80 2.69
2843 2986 1.513858 TTTGTCACCCCACCTGTAGT 58.486 50.000 0.00 0.00 0.00 2.73
2859 3002 9.504710 TGTTTGCATTTGAAGAAAATCAATTTG 57.495 25.926 0.00 0.00 38.98 2.32
2862 3005 9.111613 TCTTGTTTGCATTTGAAGAAAATCAAT 57.888 25.926 0.00 0.00 38.98 2.57
2893 3036 7.562640 TCATTGCGTCGATATAAACTATCAC 57.437 36.000 0.00 0.00 0.00 3.06
2895 3038 7.113658 GCATCATTGCGTCGATATAAACTATC 58.886 38.462 0.00 0.00 39.49 2.08
3013 3156 0.108377 AATCCGTCGTGTGCATAGCA 60.108 50.000 0.00 0.00 35.60 3.49
3014 3157 1.006832 AAATCCGTCGTGTGCATAGC 58.993 50.000 0.00 0.00 0.00 2.97
3015 3158 1.999735 ACAAATCCGTCGTGTGCATAG 59.000 47.619 0.00 0.00 0.00 2.23
3016 3159 1.729517 CACAAATCCGTCGTGTGCATA 59.270 47.619 0.00 0.00 36.55 3.14
3017 3160 0.516877 CACAAATCCGTCGTGTGCAT 59.483 50.000 0.00 0.00 36.55 3.96
3018 3161 1.938125 CACAAATCCGTCGTGTGCA 59.062 52.632 1.37 0.00 36.55 4.57
3019 3162 4.818417 CACAAATCCGTCGTGTGC 57.182 55.556 1.37 0.00 36.55 4.57
3020 3163 0.384230 GTGCACAAATCCGTCGTGTG 60.384 55.000 13.17 8.83 44.40 3.82
3021 3164 1.827315 CGTGCACAAATCCGTCGTGT 61.827 55.000 18.64 0.00 33.13 4.49
3022 3165 1.154672 CGTGCACAAATCCGTCGTG 60.155 57.895 18.64 0.00 0.00 4.35
3023 3166 0.669318 ATCGTGCACAAATCCGTCGT 60.669 50.000 18.64 0.00 0.00 4.34
3024 3167 0.442310 AATCGTGCACAAATCCGTCG 59.558 50.000 18.64 0.00 0.00 5.12
3025 3168 1.463056 TGAATCGTGCACAAATCCGTC 59.537 47.619 18.64 5.23 0.00 4.79
3026 3169 1.464608 CTGAATCGTGCACAAATCCGT 59.535 47.619 18.64 0.00 0.00 4.69
3027 3170 1.731709 TCTGAATCGTGCACAAATCCG 59.268 47.619 18.64 7.63 0.00 4.18
3028 3171 2.483877 TGTCTGAATCGTGCACAAATCC 59.516 45.455 18.64 0.00 0.00 3.01
3029 3172 3.482786 GTGTCTGAATCGTGCACAAATC 58.517 45.455 18.64 11.38 0.00 2.17
3030 3173 2.096268 CGTGTCTGAATCGTGCACAAAT 60.096 45.455 18.64 6.78 0.00 2.32
3031 3174 1.260297 CGTGTCTGAATCGTGCACAAA 59.740 47.619 18.64 4.30 0.00 2.83
3032 3175 0.858583 CGTGTCTGAATCGTGCACAA 59.141 50.000 18.64 0.00 0.00 3.33
3033 3176 0.031449 TCGTGTCTGAATCGTGCACA 59.969 50.000 18.64 4.45 0.00 4.57
3034 3177 0.435008 GTCGTGTCTGAATCGTGCAC 59.565 55.000 6.82 6.82 0.00 4.57
3035 3178 0.031449 TGTCGTGTCTGAATCGTGCA 59.969 50.000 0.00 0.00 0.00 4.57
3036 3179 0.710567 CTGTCGTGTCTGAATCGTGC 59.289 55.000 3.48 0.00 0.00 5.34
3037 3180 1.335964 ACCTGTCGTGTCTGAATCGTG 60.336 52.381 3.48 0.00 0.00 4.35
3038 3181 0.959553 ACCTGTCGTGTCTGAATCGT 59.040 50.000 3.48 0.00 0.00 3.73
3039 3182 1.068541 TGACCTGTCGTGTCTGAATCG 60.069 52.381 0.00 0.00 33.83 3.34
3040 3183 2.724977 TGACCTGTCGTGTCTGAATC 57.275 50.000 0.00 0.00 33.83 2.52
3041 3184 2.828520 AGATGACCTGTCGTGTCTGAAT 59.171 45.455 0.00 0.00 33.83 2.57
3042 3185 2.239400 AGATGACCTGTCGTGTCTGAA 58.761 47.619 0.00 0.00 33.83 3.02
3043 3186 1.911057 AGATGACCTGTCGTGTCTGA 58.089 50.000 0.00 0.00 33.83 3.27
3044 3187 2.750166 ACTAGATGACCTGTCGTGTCTG 59.250 50.000 0.00 0.00 33.83 3.51
3045 3188 3.011119 GACTAGATGACCTGTCGTGTCT 58.989 50.000 0.00 1.57 33.83 3.41
3046 3189 2.097791 GGACTAGATGACCTGTCGTGTC 59.902 54.545 0.00 0.00 0.00 3.67
3047 3190 2.093106 GGACTAGATGACCTGTCGTGT 58.907 52.381 0.00 0.00 0.00 4.49
3048 3191 2.092323 TGGACTAGATGACCTGTCGTG 58.908 52.381 0.00 0.00 0.00 4.35
3049 3192 2.509166 TGGACTAGATGACCTGTCGT 57.491 50.000 0.00 0.00 0.00 4.34
3050 3193 3.491619 CCAATGGACTAGATGACCTGTCG 60.492 52.174 0.00 0.00 0.00 4.35
3051 3194 3.706594 TCCAATGGACTAGATGACCTGTC 59.293 47.826 0.00 0.00 0.00 3.51
3052 3195 3.724478 TCCAATGGACTAGATGACCTGT 58.276 45.455 0.00 0.00 0.00 4.00
3053 3196 4.970860 ATCCAATGGACTAGATGACCTG 57.029 45.455 3.09 0.00 32.98 4.00
3054 3197 4.445448 GCAATCCAATGGACTAGATGACCT 60.445 45.833 3.09 0.00 32.98 3.85
3055 3198 3.817647 GCAATCCAATGGACTAGATGACC 59.182 47.826 3.09 0.00 32.98 4.02
3056 3199 3.817647 GGCAATCCAATGGACTAGATGAC 59.182 47.826 3.09 0.00 32.98 3.06
3057 3200 3.718434 AGGCAATCCAATGGACTAGATGA 59.282 43.478 3.09 0.00 32.98 2.92
3058 3201 4.070716 GAGGCAATCCAATGGACTAGATG 58.929 47.826 3.09 0.34 32.98 2.90
3059 3202 3.718434 TGAGGCAATCCAATGGACTAGAT 59.282 43.478 3.09 0.00 32.98 1.98
3060 3203 3.114606 TGAGGCAATCCAATGGACTAGA 58.885 45.455 3.09 0.00 32.98 2.43
3061 3204 3.565764 TGAGGCAATCCAATGGACTAG 57.434 47.619 3.09 0.00 32.98 2.57
3062 3205 4.524802 AATGAGGCAATCCAATGGACTA 57.475 40.909 3.09 0.00 32.98 2.59
3063 3206 3.393426 AATGAGGCAATCCAATGGACT 57.607 42.857 3.09 0.00 32.98 3.85
3064 3207 3.703052 AGAAATGAGGCAATCCAATGGAC 59.297 43.478 3.09 0.00 32.98 4.02
3065 3208 3.985127 AGAAATGAGGCAATCCAATGGA 58.015 40.909 3.67 3.67 35.55 3.41
3066 3209 4.748277 AAGAAATGAGGCAATCCAATGG 57.252 40.909 0.00 0.00 33.74 3.16
3067 3210 8.202137 AGATTAAAGAAATGAGGCAATCCAATG 58.798 33.333 0.00 0.00 33.74 2.82
3068 3211 8.202137 CAGATTAAAGAAATGAGGCAATCCAAT 58.798 33.333 0.00 0.00 33.74 3.16
3069 3212 7.178983 ACAGATTAAAGAAATGAGGCAATCCAA 59.821 33.333 0.00 0.00 33.74 3.53
3070 3213 6.664816 ACAGATTAAAGAAATGAGGCAATCCA 59.335 34.615 0.00 0.00 33.74 3.41
3071 3214 6.976925 CACAGATTAAAGAAATGAGGCAATCC 59.023 38.462 0.00 0.00 0.00 3.01
3072 3215 7.487189 CACACAGATTAAAGAAATGAGGCAATC 59.513 37.037 0.00 0.00 0.00 2.67
3073 3216 7.318141 CACACAGATTAAAGAAATGAGGCAAT 58.682 34.615 0.00 0.00 0.00 3.56
3074 3217 6.294675 CCACACAGATTAAAGAAATGAGGCAA 60.295 38.462 0.00 0.00 0.00 4.52
3075 3218 5.183713 CCACACAGATTAAAGAAATGAGGCA 59.816 40.000 0.00 0.00 0.00 4.75
3076 3219 5.644644 CCACACAGATTAAAGAAATGAGGC 58.355 41.667 0.00 0.00 0.00 4.70
3077 3220 5.416952 AGCCACACAGATTAAAGAAATGAGG 59.583 40.000 0.00 0.00 0.00 3.86
3078 3221 6.506500 AGCCACACAGATTAAAGAAATGAG 57.493 37.500 0.00 0.00 0.00 2.90
3079 3222 6.716628 AGAAGCCACACAGATTAAAGAAATGA 59.283 34.615 0.00 0.00 0.00 2.57
3080 3223 6.917533 AGAAGCCACACAGATTAAAGAAATG 58.082 36.000 0.00 0.00 0.00 2.32
3081 3224 8.635765 TTAGAAGCCACACAGATTAAAGAAAT 57.364 30.769 0.00 0.00 0.00 2.17
3082 3225 8.635765 ATTAGAAGCCACACAGATTAAAGAAA 57.364 30.769 0.00 0.00 0.00 2.52
3083 3226 7.882791 TGATTAGAAGCCACACAGATTAAAGAA 59.117 33.333 0.00 0.00 0.00 2.52
3084 3227 7.394016 TGATTAGAAGCCACACAGATTAAAGA 58.606 34.615 0.00 0.00 0.00 2.52
3085 3228 7.615582 TGATTAGAAGCCACACAGATTAAAG 57.384 36.000 0.00 0.00 0.00 1.85
3086 3229 7.611467 ACATGATTAGAAGCCACACAGATTAAA 59.389 33.333 0.00 0.00 0.00 1.52
3087 3230 7.112122 ACATGATTAGAAGCCACACAGATTAA 58.888 34.615 0.00 0.00 0.00 1.40
3088 3231 6.653020 ACATGATTAGAAGCCACACAGATTA 58.347 36.000 0.00 0.00 0.00 1.75
3089 3232 5.503927 ACATGATTAGAAGCCACACAGATT 58.496 37.500 0.00 0.00 0.00 2.40
3090 3233 5.108187 ACATGATTAGAAGCCACACAGAT 57.892 39.130 0.00 0.00 0.00 2.90
3091 3234 4.507710 GACATGATTAGAAGCCACACAGA 58.492 43.478 0.00 0.00 0.00 3.41
3092 3235 3.308053 CGACATGATTAGAAGCCACACAG 59.692 47.826 0.00 0.00 0.00 3.66
3093 3236 3.261580 CGACATGATTAGAAGCCACACA 58.738 45.455 0.00 0.00 0.00 3.72
3094 3237 3.062639 CACGACATGATTAGAAGCCACAC 59.937 47.826 0.00 0.00 0.00 3.82
3095 3238 3.261580 CACGACATGATTAGAAGCCACA 58.738 45.455 0.00 0.00 0.00 4.17
3096 3239 2.030946 GCACGACATGATTAGAAGCCAC 59.969 50.000 0.00 0.00 0.00 5.01
3097 3240 2.279741 GCACGACATGATTAGAAGCCA 58.720 47.619 0.00 0.00 0.00 4.75
3098 3241 2.030946 GTGCACGACATGATTAGAAGCC 59.969 50.000 0.00 0.00 0.00 4.35
3099 3242 2.672874 TGTGCACGACATGATTAGAAGC 59.327 45.455 13.13 0.00 0.00 3.86
3100 3243 4.926860 TTGTGCACGACATGATTAGAAG 57.073 40.909 13.13 0.00 33.40 2.85
3101 3244 5.643348 AGATTTGTGCACGACATGATTAGAA 59.357 36.000 13.13 0.00 33.40 2.10
3102 3245 5.178061 AGATTTGTGCACGACATGATTAGA 58.822 37.500 13.13 0.00 33.40 2.10
3103 3246 5.475273 AGATTTGTGCACGACATGATTAG 57.525 39.130 13.13 0.00 33.40 1.73
3104 3247 5.163764 GGAAGATTTGTGCACGACATGATTA 60.164 40.000 13.13 0.00 33.40 1.75
3105 3248 4.379813 GGAAGATTTGTGCACGACATGATT 60.380 41.667 13.13 0.79 33.40 2.57
3106 3249 3.127548 GGAAGATTTGTGCACGACATGAT 59.872 43.478 13.13 0.00 33.40 2.45
3107 3250 2.483877 GGAAGATTTGTGCACGACATGA 59.516 45.455 13.13 0.00 33.40 3.07
3108 3251 2.226200 TGGAAGATTTGTGCACGACATG 59.774 45.455 13.13 0.00 33.40 3.21
3109 3252 2.503331 TGGAAGATTTGTGCACGACAT 58.497 42.857 13.13 6.89 33.40 3.06
3110 3253 1.960417 TGGAAGATTTGTGCACGACA 58.040 45.000 13.13 0.19 0.00 4.35
3111 3254 2.483877 TGATGGAAGATTTGTGCACGAC 59.516 45.455 13.13 0.00 0.00 4.34
3112 3255 2.777094 TGATGGAAGATTTGTGCACGA 58.223 42.857 13.13 7.71 0.00 4.35
3113 3256 3.236816 GTTGATGGAAGATTTGTGCACG 58.763 45.455 13.13 0.00 0.00 5.34
3114 3257 4.241590 TGTTGATGGAAGATTTGTGCAC 57.758 40.909 10.75 10.75 0.00 4.57
3115 3258 4.379708 CGATGTTGATGGAAGATTTGTGCA 60.380 41.667 0.00 0.00 0.00 4.57
3116 3259 4.100529 CGATGTTGATGGAAGATTTGTGC 58.899 43.478 0.00 0.00 0.00 4.57
3117 3260 5.090757 CACGATGTTGATGGAAGATTTGTG 58.909 41.667 0.00 0.00 0.00 3.33
3118 3261 4.761739 ACACGATGTTGATGGAAGATTTGT 59.238 37.500 0.00 0.00 0.00 2.83
3119 3262 5.090757 CACACGATGTTGATGGAAGATTTG 58.909 41.667 0.00 0.00 0.00 2.32
3120 3263 4.761739 ACACACGATGTTGATGGAAGATTT 59.238 37.500 0.00 0.00 38.98 2.17
3121 3264 4.326826 ACACACGATGTTGATGGAAGATT 58.673 39.130 0.00 0.00 38.98 2.40
3122 3265 3.942829 ACACACGATGTTGATGGAAGAT 58.057 40.909 0.00 0.00 38.98 2.40
3123 3266 3.401033 ACACACGATGTTGATGGAAGA 57.599 42.857 0.00 0.00 38.98 2.87
3124 3267 3.993736 TGTACACACGATGTTGATGGAAG 59.006 43.478 0.00 0.00 43.19 3.46
3125 3268 3.993736 CTGTACACACGATGTTGATGGAA 59.006 43.478 0.00 0.00 43.19 3.53
3126 3269 3.584834 CTGTACACACGATGTTGATGGA 58.415 45.455 0.00 0.00 43.19 3.41
3127 3270 2.094258 GCTGTACACACGATGTTGATGG 59.906 50.000 0.00 0.00 43.19 3.51
3128 3271 2.736192 TGCTGTACACACGATGTTGATG 59.264 45.455 0.00 0.00 43.19 3.07
3129 3272 3.038788 TGCTGTACACACGATGTTGAT 57.961 42.857 0.00 0.00 43.19 2.57
3130 3273 2.517650 TGCTGTACACACGATGTTGA 57.482 45.000 0.00 0.00 43.19 3.18
3148 3291 5.359977 GTCGGAGAAATGCAAACGAAAGTG 61.360 45.833 0.00 0.00 42.10 3.16
3149 3292 3.303791 GTCGGAGAAATGCAAACGAAAGT 60.304 43.478 0.00 0.00 45.01 2.66
3150 3293 3.226347 GTCGGAGAAATGCAAACGAAAG 58.774 45.455 0.00 0.00 39.69 2.62
3151 3294 2.614520 TGTCGGAGAAATGCAAACGAAA 59.385 40.909 0.00 0.00 39.69 3.46
3152 3295 2.214347 TGTCGGAGAAATGCAAACGAA 58.786 42.857 0.00 0.00 39.69 3.85
3153 3296 1.798223 CTGTCGGAGAAATGCAAACGA 59.202 47.619 0.00 0.00 39.69 3.85
3154 3297 1.798223 TCTGTCGGAGAAATGCAAACG 59.202 47.619 0.00 0.00 39.69 3.60
3155 3298 2.808543 ACTCTGTCGGAGAAATGCAAAC 59.191 45.455 15.88 0.00 44.45 2.93
3156 3299 2.807967 CACTCTGTCGGAGAAATGCAAA 59.192 45.455 15.88 0.00 44.45 3.68
3157 3300 2.224281 ACACTCTGTCGGAGAAATGCAA 60.224 45.455 15.88 0.00 44.45 4.08
3158 3301 1.344438 ACACTCTGTCGGAGAAATGCA 59.656 47.619 15.88 0.00 44.45 3.96
3159 3302 2.086054 ACACTCTGTCGGAGAAATGC 57.914 50.000 15.88 0.00 44.45 3.56
3160 3303 5.465390 TGTTAAACACTCTGTCGGAGAAATG 59.535 40.000 15.88 6.00 44.45 2.32
3161 3304 5.607477 TGTTAAACACTCTGTCGGAGAAAT 58.393 37.500 15.88 1.68 44.45 2.17
3162 3305 5.013568 TGTTAAACACTCTGTCGGAGAAA 57.986 39.130 15.88 0.00 44.45 2.52
3163 3306 4.659111 TGTTAAACACTCTGTCGGAGAA 57.341 40.909 15.88 0.00 44.45 2.87
3164 3307 4.659111 TTGTTAAACACTCTGTCGGAGA 57.341 40.909 15.88 0.00 44.45 3.71
3165 3308 5.728351 TTTTGTTAAACACTCTGTCGGAG 57.272 39.130 7.16 7.16 46.87 4.63
3190 3333 2.167662 GGGTTGGTTGGAATGTGGTAG 58.832 52.381 0.00 0.00 0.00 3.18
3208 3351 5.413309 AGAGTTGTAGTTTCTCATCAGGG 57.587 43.478 0.00 0.00 0.00 4.45
3210 3353 8.818141 TTTGTAGAGTTGTAGTTTCTCATCAG 57.182 34.615 0.00 0.00 0.00 2.90
3241 3384 4.002316 GACGTAGAGTGGTAGTTCTCTGT 58.998 47.826 5.15 0.00 40.61 3.41
3351 3494 0.533308 TGGCAGCGTTTTTCTACCGT 60.533 50.000 0.00 0.00 0.00 4.83
3355 3498 2.192664 TCCATGGCAGCGTTTTTCTA 57.807 45.000 6.96 0.00 0.00 2.10
3399 3542 6.883756 TGTCTGTATTATTTCCATGTTCTGCA 59.116 34.615 0.00 0.00 0.00 4.41
3454 3597 5.581605 TGTTCTCAAAGATTTGTTCTGCAC 58.418 37.500 5.29 0.00 39.18 4.57
3464 3607 5.204409 TGCTGCATTTGTTCTCAAAGATT 57.796 34.783 0.00 0.00 45.01 2.40
3512 3655 1.603931 GGAAAGTGCTTTCTGGCTTGC 60.604 52.381 19.96 2.94 46.01 4.01
3524 3667 4.336433 TGCTTCTATATTGCAGGAAAGTGC 59.664 41.667 0.00 0.00 44.27 4.40
3613 3756 4.134563 GTGGTGCGTATTTCCTATCCAAT 58.865 43.478 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.