AutoCloner

Multiple sequence alignment - TraesCS6D01G298800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G298800	chr6D	100.000	2915	0	0	1	2915	409517900	409520814	0.000000e+00	5384.0
1	TraesCS6D01G298800	chr6D	77.866	759	119	28	1143	1882	409655215	409655943	2.680000e-115	425.0
2	TraesCS6D01G298800	chr6B	91.690	1420	103	11	1069	2486	615234448	615235854	0.000000e+00	1954.0
3	TraesCS6D01G298800	chr6B	89.706	1088	49	24	1	1077	615231982	615233017	0.000000e+00	1330.0
4	TraesCS6D01G298800	chr6B	89.027	966	98	6	1951	2915	615177469	615178427	0.000000e+00	1190.0
5	TraesCS6D01G298800	chr6B	82.494	1291	182	24	1454	2719	615312470	615313741	0.000000e+00	1092.0
6	TraesCS6D01G298800	chr6B	84.297	1038	101	31	451	1453	615294222	615295232	0.000000e+00	957.0
7	TraesCS6D01G298800	chr6B	91.241	685	41	8	337	1015	615169048	615169719	0.000000e+00	915.0
8	TraesCS6D01G298800	chr6B	88.356	438	47	3	2478	2915	615251959	615252392	9.260000e-145	523.0
9	TraesCS6D01G298800	chr6B	90.964	332	27	1	1046	1377	615170754	615171082	7.410000e-121	444.0
10	TraesCS6D01G298800	chr6B	77.530	761	121	23	1143	1882	615605438	615606169	2.090000e-111	412.0
11	TraesCS6D01G298800	chr6B	91.139	237	11	2	1	237	615168714	615168940	2.180000e-81	313.0
12	TraesCS6D01G298800	chr6B	82.500	280	16	15	207	455	615292202	615292479	6.330000e-52	215.0
13	TraesCS6D01G298800	chr6B	93.496	123	8	0	1373	1495	615177352	615177474	1.780000e-42	183.0
14	TraesCS6D01G298800	chr6B	91.892	74	6	0	222	295	615168959	615169032	1.430000e-18	104.0
15	TraesCS6D01G298800	chr6B	97.500	40	1	0	1027	1066	615170715	615170754	5.210000e-08	69.4
16	TraesCS6D01G298800	chr6A	80.416	1491	194	51	1454	2884	554869575	554871027	0.000000e+00	1046.0
17	TraesCS6D01G298800	chr6A	84.701	902	73	26	451	1324	554867778	554868642	0.000000e+00	841.0
18	TraesCS6D01G298800	chr6A	79.927	548	66	25	1143	1674	555088983	555089502	2.140000e-96	363.0
19	TraesCS6D01G298800	chr6A	88.043	276	24	6	64	331	554867220	554867494	4.690000e-83	318.0
20	TraesCS6D01G298800	chr3B	76.923	429	93	6	2212	2638	727947770	727948194	3.750000e-59	239.0
21	TraesCS6D01G298800	chr3B	77.869	366	72	8	2245	2607	572268705	572269064	4.890000e-53	219.0
22	TraesCS6D01G298800	chr7B	78.068	383	54	17	1143	1516	213254305	213254666	6.330000e-52	215.0
23	TraesCS6D01G298800	chr7D	77.233	347	77	2	2215	2561	29721717	29721373	4.930000e-48	202.0
24	TraesCS6D01G298800	chr3A	77.249	378	60	16	1146	1516	687598386	687598028	6.370000e-47	198.0
25	TraesCS6D01G298800	chr4A	75.550	409	88	11	2145	2548	692630536	692630135	1.070000e-44	191.0
26	TraesCS6D01G298800	chrUn	78.519	270	55	3	2216	2484	28829086	28829353	1.070000e-39	174.0
27	TraesCS6D01G298800	chr7A	73.558	416	100	10	2189	2602	642874355	642874762	1.810000e-32	150.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G298800	chr6D	409517900	409520814	2914	False	5384.00	5384	100.000000	1	2915	1	chr6D.!!$F1	2914
1	TraesCS6D01G298800	chr6D	409655215	409655943	728	False	425.00	425	77.866000	1143	1882	1	chr6D.!!$F2	739
2	TraesCS6D01G298800	chr6B	615231982	615235854	3872	False	1642.00	1954	90.698000	1	2486	2	chr6B.!!$F6	2485
3	TraesCS6D01G298800	chr6B	615312470	615313741	1271	False	1092.00	1092	82.494000	1454	2719	1	chr6B.!!$F2	1265
4	TraesCS6D01G298800	chr6B	615177352	615178427	1075	False	686.50	1190	91.261500	1373	2915	2	chr6B.!!$F5	1542
5	TraesCS6D01G298800	chr6B	615292202	615295232	3030	False	586.00	957	83.398500	207	1453	2	chr6B.!!$F7	1246
6	TraesCS6D01G298800	chr6B	615605438	615606169	731	False	412.00	412	77.530000	1143	1882	1	chr6B.!!$F3	739
7	TraesCS6D01G298800	chr6B	615168714	615171082	2368	False	369.08	915	92.547200	1	1377	5	chr6B.!!$F4	1376
8	TraesCS6D01G298800	chr6A	554867220	554871027	3807	False	735.00	1046	84.386667	64	2884	3	chr6A.!!$F2	2820
9	TraesCS6D01G298800	chr6A	555088983	555089502	519	False	363.00	363	79.927000	1143	1674	1	chr6A.!!$F1	531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
585	2416	0.450184	CACGTAATTTGAAGGCCCGG	59.55	55.0	0.0	0.0	0.0	5.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2572	7771	0.106708	AGGCAAAGTCGCACTCTTCA	59.893	50.0	0.0	0.0	0.0	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	58	4.224274	TTTCGTGGACACCGGCGT	62.224	61.111	6.01	0.00	0.00	5.68
153	155	5.712152	TTTCTTTCAGGCCTTGATCTTTC	57.288	39.130	0.00	0.00	35.27	2.62
213	222	6.116680	GCATTTGGCAGATCATACTATAGC	57.883	41.667	0.00	0.00	43.97	2.97
232	275	1.269936	GCCATGTGTGAAAGCTTTGCT	60.270	47.619	18.30	0.00	42.56	3.91
244	287	2.602878	AGCTTTGCTTTTCGATGCATG	58.397	42.857	2.46	0.00	39.07	4.06
248	292	4.726416	CTTTGCTTTTCGATGCATGTACT	58.274	39.130	2.46	0.00	39.07	2.73
249	293	3.745332	TGCTTTTCGATGCATGTACTG	57.255	42.857	2.46	0.00	33.94	2.74
325	369	5.640147	TCCATTCATCCTAAACAAGTTGGT	58.360	37.500	7.96	0.00	0.00	3.67
331	375	3.547746	TCCTAAACAAGTTGGTGGTCAC	58.452	45.455	7.96	0.00	0.00	3.67
332	376	3.201266	TCCTAAACAAGTTGGTGGTCACT	59.799	43.478	7.96	0.00	0.00	3.41
333	377	3.564225	CCTAAACAAGTTGGTGGTCACTC	59.436	47.826	7.96	0.00	0.00	3.51
334	378	2.052782	AACAAGTTGGTGGTCACTCC	57.947	50.000	7.96	0.00	0.00	3.85
335	379	0.916086	ACAAGTTGGTGGTCACTCCA	59.084	50.000	7.96	0.00	45.01	3.86
435	510	7.688578	GTCACGTATTAGCTTGTTTCTGAAATC	59.311	37.037	6.06	1.53	0.00	2.17
577	2408	6.627395	AGACCATTGTTTCACGTAATTTGA	57.373	33.333	0.00	0.00	0.00	2.69
581	2412	5.118510	CCATTGTTTCACGTAATTTGAAGGC	59.881	40.000	0.00	0.00	34.50	4.35
585	2416	0.450184	CACGTAATTTGAAGGCCCGG	59.550	55.000	0.00	0.00	0.00	5.73
590	2421	3.119280	CGTAATTTGAAGGCCCGGAATTT	60.119	43.478	0.73	0.00	0.00	1.82
667	2498	8.667463	GTGAGTAGAATAGTCGACTAGAGTTTT	58.333	37.037	27.81	17.79	44.02	2.43
744	2586	9.688091	TTTACTAATTATATTGGGTGCTTGTGA	57.312	29.630	0.00	0.00	0.00	3.58
781	2628	4.399004	TTTTGATCAAAACACCCACCTG	57.601	40.909	26.01	0.00	35.57	4.00
821	2668	7.915293	TCGCTAAATAAGGAAATTCTGACAA	57.085	32.000	0.00	0.00	0.00	3.18
822	2669	8.506168	TCGCTAAATAAGGAAATTCTGACAAT	57.494	30.769	0.00	0.00	0.00	2.71
847	2694	7.801716	ATAATGTGTGTGAACAGTTGTAACT	57.198	32.000	0.00	0.00	40.60	2.24
848	2695	6.509418	AATGTGTGTGAACAGTTGTAACTT	57.491	33.333	0.00	0.00	37.08	2.66
849	2696	5.289917	TGTGTGTGAACAGTTGTAACTTG	57.710	39.130	0.00	0.00	37.08	3.16
850	2697	4.757657	TGTGTGTGAACAGTTGTAACTTGT	59.242	37.500	0.00	0.00	37.08	3.16
851	2698	5.932883	TGTGTGTGAACAGTTGTAACTTGTA	59.067	36.000	0.00	0.00	37.08	2.41
852	2699	6.427242	TGTGTGTGAACAGTTGTAACTTGTAA	59.573	34.615	0.00	0.00	37.08	2.41
856	2703	7.804129	GTGTGAACAGTTGTAACTTGTAAACAA	59.196	33.333	0.00	0.00	37.08	2.83
873	2720	1.227556	AACCGTCAGCAGTGTGGAC	60.228	57.895	6.32	6.32	0.00	4.02
884	2731	2.350522	CAGTGTGGACATGCTTACTCC	58.649	52.381	0.00	0.00	0.00	3.85
885	2732	2.027745	CAGTGTGGACATGCTTACTCCT	60.028	50.000	0.00	0.00	0.00	3.69
886	2733	2.027745	AGTGTGGACATGCTTACTCCTG	60.028	50.000	0.00	0.00	0.00	3.86
887	2734	1.977854	TGTGGACATGCTTACTCCTGT	59.022	47.619	0.00	0.00	0.00	4.00
888	2735	2.371841	TGTGGACATGCTTACTCCTGTT	59.628	45.455	0.00	0.00	0.00	3.16
889	2736	3.181445	TGTGGACATGCTTACTCCTGTTT	60.181	43.478	0.00	0.00	0.00	2.83
920	2767	1.071385	CATATGCACACTCCCTCTCCC	59.929	57.143	0.00	0.00	0.00	4.30
922	2769	2.997897	GCACACTCCCTCTCCCGT	60.998	66.667	0.00	0.00	0.00	5.28
981	2829	6.487331	TCCAGCAACTCGTCCTTTAAAAATTA	59.513	34.615	0.00	0.00	0.00	1.40
993	2841	4.854361	TTAAAAATTACGCGCGGTGATA	57.146	36.364	35.22	14.70	0.00	2.15
1107	5414	0.896940	ACACCGACCTGACCACGTAT	60.897	55.000	0.00	0.00	0.00	3.06
1130	5437	1.289066	GGTACGTCACAGCTGAGCA	59.711	57.895	23.35	0.00	0.00	4.26
1194	5504	2.434359	GGTTCCAGCTCCCGAACG	60.434	66.667	10.28	0.00	39.42	3.95
1268	5578	2.203451	ACAGACACCGTCGTCCCT	60.203	61.111	0.00	0.00	37.67	4.20
1280	5590	2.663196	GTCCCTACGCTGCACCTT	59.337	61.111	0.00	0.00	0.00	3.50
1499	6618	1.076632	GCGAAGGAGGAGAGGGAGA	60.077	63.158	0.00	0.00	0.00	3.71
1603	6722	2.590575	CACCTTTGACACCGCCGT	60.591	61.111	0.00	0.00	0.00	5.68
1645	6766	4.116328	CGCGGCTCTCGAGTTCCA	62.116	66.667	13.13	0.00	42.43	3.53
1654	6775	4.308458	CGAGTTCCACGGCCACCA	62.308	66.667	2.24	0.00	0.00	4.17
1703	6824	2.186644	CCATCGTGGGCATCGACA	59.813	61.111	5.50	0.00	40.07	4.35
1725	6852	1.683385	CGACATCTGGCTCATCCACTA	59.317	52.381	0.00	0.00	40.72	2.74
1729	6856	0.684479	TCTGGCTCATCCACTACGCT	60.684	55.000	0.00	0.00	40.72	5.07
1781	6920	1.939934	CACGAGAACTGCAGGTCAAAA	59.060	47.619	32.43	0.00	0.00	2.44
2020	7186	8.994429	ACATTTATCACTTGACTGAGACTTAG	57.006	34.615	0.00	0.00	0.00	2.18
2050	7242	2.660572	AGTCGACTGAGACATAGCCAT	58.339	47.619	19.30	0.00	43.24	4.40
2053	7245	3.315470	GTCGACTGAGACATAGCCATACA	59.685	47.826	8.70	0.00	40.65	2.29
2058	7250	6.459710	CGACTGAGACATAGCCATACACTAAA	60.460	42.308	0.00	0.00	0.00	1.85
2084	7276	9.754382	AGCATTATAATTGATCAATTCCAACAC	57.246	29.630	31.70	20.85	40.99	3.32
2208	7405	2.163818	TGACCGGTCACATCTCAAAC	57.836	50.000	33.23	3.65	34.14	2.93
2228	7425	3.606687	ACTATCATTTCCACAACCGGAC	58.393	45.455	9.46	0.00	33.75	4.79
2266	7463	9.667607	AAATCCCCAAATCCATACAATTACATA	57.332	29.630	0.00	0.00	0.00	2.29
2358	7555	1.077357	TTGGAGTGTTGGTGCGGTT	60.077	52.632	0.00	0.00	0.00	4.44
2483	7681	0.320771	GTCGCTGGTTGATGTGAGGT	60.321	55.000	0.00	0.00	0.00	3.85
2529	7728	1.301401	CCGACACGTCCACCACAAT	60.301	57.895	0.00	0.00	0.00	2.71
2572	7771	2.580601	GGCCACCCGTACTGACACT	61.581	63.158	0.00	0.00	0.00	3.55
2574	7773	1.812686	GCCACCCGTACTGACACTGA	61.813	60.000	0.00	0.00	0.00	3.41
2732	7931	2.189521	CCGCTACGGCTTTGGGAT	59.810	61.111	0.00	0.00	41.17	3.85
2769	7972	2.898738	CTCCATCGAGGCAGCAGT	59.101	61.111	0.00	0.00	37.29	4.40
2781	7984	3.606662	AGCAGTGACACGCCTCGT	61.607	61.111	15.56	0.00	42.36	4.18
2809	8012	2.181975	CAAAGTGCCATTTGAGGGGAT	58.818	47.619	5.07	0.00	41.71	3.85
2819	8022	4.018141	CCATTTGAGGGGATGCTATGGATA	60.018	45.833	0.00	0.00	34.39	2.59
2869	8072	2.678934	TTCTCCTAGCGGCCGTGT	60.679	61.111	28.70	17.28	0.00	4.49
2870	8073	2.280552	TTCTCCTAGCGGCCGTGTT	61.281	57.895	28.70	15.34	0.00	3.32
2887	8090	1.003839	TTGGAGCTCAACGCGGAAT	60.004	52.632	17.19	0.00	45.59	3.01
2890	8093	1.152383	GGAGCTCAACGCGGAATACC	61.152	60.000	17.19	0.89	45.59	2.73
2896	8099	2.540101	CTCAACGCGGAATACCATCTTC	59.460	50.000	12.47	0.00	35.59	2.87
2904	8107	4.130118	CGGAATACCATCTTCTCTTTGGG	58.870	47.826	0.00	0.00	34.72	4.12
2910	8113	1.734465	CATCTTCTCTTTGGGCGTGAC	59.266	52.381	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	99	1.898574	CCGGCCTGAAAGCAACAGT	60.899	57.895	0.00	0.00	34.04	3.55
213	222	2.806608	AGCAAAGCTTTCACACATGG	57.193	45.000	9.23	0.00	33.89	3.66
232	275	5.411053	TGTTCATCAGTACATGCATCGAAAA	59.589	36.000	0.00	0.00	0.00	2.29
244	287	4.702392	CGAAACTGCTTGTTCATCAGTAC	58.298	43.478	8.02	0.00	39.86	2.73
248	292	2.221169	AGCGAAACTGCTTGTTCATCA	58.779	42.857	0.00	0.00	44.46	3.07
249	293	2.977405	AGCGAAACTGCTTGTTCATC	57.023	45.000	0.00	0.00	44.46	2.92
331	375	1.416813	GCGCTGTCTGTCGAATGGAG	61.417	60.000	0.00	0.00	0.00	3.86
332	376	1.446099	GCGCTGTCTGTCGAATGGA	60.446	57.895	0.00	0.00	0.00	3.41
333	377	2.792290	CGCGCTGTCTGTCGAATGG	61.792	63.158	5.56	0.00	0.00	3.16
334	378	1.737196	CTCGCGCTGTCTGTCGAATG	61.737	60.000	5.56	0.00	0.00	2.67
335	379	1.515088	CTCGCGCTGTCTGTCGAAT	60.515	57.895	5.56	0.00	0.00	3.34
435	510	3.694734	ACAGAAACACGTCTTGCATTTG	58.305	40.909	0.00	0.00	0.00	2.32
590	2421	9.745880	CCACTATAGTATCTTAGCGAAGAAAAA	57.254	33.333	13.49	0.00	44.85	1.94
765	2612	2.693074	GACAACAGGTGGGTGTTTTGAT	59.307	45.455	0.00	0.00	38.65	2.57
773	2620	0.750182	CCGTTTGACAACAGGTGGGT	60.750	55.000	0.00	0.00	32.54	4.51
781	2628	1.329599	AGCGAAAGACCGTTTGACAAC	59.670	47.619	0.00	0.00	0.00	3.32
821	2668	9.502091	AGTTACAACTGTTCACACACATTATAT	57.498	29.630	0.00	0.00	37.98	0.86
822	2669	8.896320	AGTTACAACTGTTCACACACATTATA	57.104	30.769	0.00	0.00	37.98	0.98
846	2693	2.612212	ACTGCTGACGGTTGTTTACAAG	59.388	45.455	0.00	0.00	36.39	3.16
847	2694	2.353269	CACTGCTGACGGTTGTTTACAA	59.647	45.455	0.00	0.00	31.05	2.41
848	2695	1.937223	CACTGCTGACGGTTGTTTACA	59.063	47.619	0.00	0.00	31.05	2.41
849	2696	1.937899	ACACTGCTGACGGTTGTTTAC	59.062	47.619	0.00	0.00	31.05	2.01
850	2697	1.937223	CACACTGCTGACGGTTGTTTA	59.063	47.619	0.00	0.00	31.05	2.01
851	2698	0.732571	CACACTGCTGACGGTTGTTT	59.267	50.000	0.00	0.00	31.05	2.83
852	2699	1.095228	CCACACTGCTGACGGTTGTT	61.095	55.000	0.00	0.00	31.05	2.83
856	2703	1.758440	ATGTCCACACTGCTGACGGT	61.758	55.000	0.00	0.00	35.02	4.83
873	2720	4.201851	CGATGGAAAACAGGAGTAAGCATG	60.202	45.833	0.00	0.00	0.00	4.06
881	2728	1.339055	TGCCTCGATGGAAAACAGGAG	60.339	52.381	5.24	0.00	38.35	3.69
884	2731	3.304257	GCATATGCCTCGATGGAAAACAG	60.304	47.826	17.26	0.00	38.35	3.16
885	2732	2.618241	GCATATGCCTCGATGGAAAACA	59.382	45.455	17.26	0.00	38.35	2.83
886	2733	2.618241	TGCATATGCCTCGATGGAAAAC	59.382	45.455	24.54	0.00	41.18	2.43
887	2734	2.618241	GTGCATATGCCTCGATGGAAAA	59.382	45.455	24.54	0.00	41.18	2.29
888	2735	2.221169	GTGCATATGCCTCGATGGAAA	58.779	47.619	24.54	0.00	41.18	3.13
889	2736	1.140652	TGTGCATATGCCTCGATGGAA	59.859	47.619	24.54	0.00	41.18	3.53
920	2767	0.584876	GAACGGAGGTGTGGAAAACG	59.415	55.000	0.00	0.00	0.00	3.60
922	2769	0.179012	GGGAACGGAGGTGTGGAAAA	60.179	55.000	0.00	0.00	0.00	2.29
981	2829	1.349259	GAAAGTGTATCACCGCGCGT	61.349	55.000	29.95	14.24	34.49	6.01
993	2841	3.439129	GCCGTGCCTTTTATAGAAAGTGT	59.561	43.478	0.00	0.00	0.00	3.55
1107	5414	0.239082	CAGCTGTGACGTACCGTACA	59.761	55.000	5.25	0.44	41.37	2.90
1130	5437	1.221466	CCATGACGTGCACTCGTGTT	61.221	55.000	24.37	6.56	44.21	3.32
1194	5504	2.185608	GGAGTTCTCCTGCTCGGC	59.814	66.667	11.20	0.00	32.83	5.54
1268	5578	2.047274	GGCTCAAGGTGCAGCGTA	60.047	61.111	10.78	0.00	36.41	4.42
1499	6618	2.978010	CGCACGCCCCTGAACTTT	60.978	61.111	0.00	0.00	0.00	2.66
1573	6692	0.827507	AAAGGTGCCGAGCCATTTGT	60.828	50.000	0.00	0.00	0.00	2.83
1577	6696	1.675641	GTCAAAGGTGCCGAGCCAT	60.676	57.895	0.00	0.00	0.00	4.40
1627	6748	4.856607	GGAACTCGAGAGCCGCGG	62.857	72.222	24.05	24.05	38.37	6.46
1654	6775	2.032681	GGAAGTTGAGCCTGGCGT	59.967	61.111	13.96	1.21	0.00	5.68
1701	6822	1.069823	GGATGAGCCAGATGTCGATGT	59.930	52.381	0.00	0.00	36.34	3.06
1703	6824	1.417288	TGGATGAGCCAGATGTCGAT	58.583	50.000	0.00	0.00	43.33	3.59
1757	6896	2.560981	TGACCTGCAGTTCTCGTGAATA	59.439	45.455	12.87	0.00	34.40	1.75
1758	6897	1.344438	TGACCTGCAGTTCTCGTGAAT	59.656	47.619	12.87	0.00	34.40	2.57
1781	6920	1.226323	GTACGCTGACGATGACGCT	60.226	57.895	0.00	0.00	43.93	5.07
1987	7152	9.996554	TCAGTCAAGTGATAAATGTAAGAAAGA	57.003	29.630	0.00	0.00	0.00	2.52
2019	7185	7.035840	TGTCTCAGTCGACTAAAACTTAACT	57.964	36.000	19.57	0.00	35.00	2.24
2020	7186	7.870588	ATGTCTCAGTCGACTAAAACTTAAC	57.129	36.000	19.57	8.57	35.00	2.01
2058	7250	9.754382	GTGTTGGAATTGATCAATTATAATGCT	57.246	29.630	29.05	8.96	40.77	3.79
2115	7310	2.626743	GGGCCGTAGATGCTCTTAAGTA	59.373	50.000	1.63	0.00	0.00	2.24
2208	7405	3.374058	GTGTCCGGTTGTGGAAATGATAG	59.626	47.826	0.00	0.00	40.44	2.08
2228	7425	8.263640	TGGATTTGGGGATTTGTAATTTATGTG	58.736	33.333	0.00	0.00	0.00	3.21
2266	7463	6.183360	CCGCTCAATATTAGGTTTCATGTTGT	60.183	38.462	0.00	0.00	0.00	3.32
2358	7555	1.600636	CTCCTCTGTTTTGCCGGCA	60.601	57.895	29.03	29.03	0.00	5.69
2369	7566	0.539051	GTGTCCCATGTCCTCCTCTG	59.461	60.000	0.00	0.00	0.00	3.35
2473	7671	4.441495	GGATACATCGTCAACCTCACATCA	60.441	45.833	0.00	0.00	0.00	3.07
2572	7771	0.106708	AGGCAAAGTCGCACTCTTCA	59.893	50.000	0.00	0.00	0.00	3.02
2574	7773	0.946221	CGAGGCAAAGTCGCACTCTT	60.946	55.000	0.00	0.00	31.13	2.85
2617	7816	0.390472	GTCGTGCAAGGAAGAGGGAG	60.390	60.000	0.00	0.00	29.57	4.30
2618	7817	1.671742	GTCGTGCAAGGAAGAGGGA	59.328	57.895	0.00	0.00	29.57	4.20
2675	7874	3.507009	CGTCGACTCGGAGGTCCC	61.507	72.222	14.70	0.00	33.07	4.46
2732	7931	3.755628	GGTGCGGTCCGTCTAGCA	61.756	66.667	13.94	0.00	37.26	3.49
2781	7984	3.567585	TCAAATGGCACTTTGATTCGACA	59.432	39.130	16.07	0.00	39.55	4.35
2786	7989	2.568509	CCCCTCAAATGGCACTTTGATT	59.431	45.455	18.64	0.00	42.54	2.57
2809	8012	2.487746	TCTGGTGGGTATCCATAGCA	57.512	50.000	0.00	0.00	46.09	3.49
2819	8022	2.052690	CGGACTCGATCTGGTGGGT	61.053	63.158	0.00	0.00	39.00	4.51
2869	8072	0.248012	TATTCCGCGTTGAGCTCCAA	59.752	50.000	12.15	2.77	45.59	3.53
2870	8073	0.459585	GTATTCCGCGTTGAGCTCCA	60.460	55.000	12.15	0.00	45.59	3.86
2876	8079	2.167693	AGAAGATGGTATTCCGCGTTGA	59.832	45.455	4.92	0.00	36.30	3.18
2887	8090	1.906574	ACGCCCAAAGAGAAGATGGTA	59.093	47.619	0.00	0.00	32.13	3.25
2890	8093	1.734465	GTCACGCCCAAAGAGAAGATG	59.266	52.381	0.00	0.00	0.00	2.90
2896	8099	3.442996	CCTAGTCACGCCCAAAGAG	57.557	57.895	0.00	0.00	0.00	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.