Multiple sequence alignment - TraesCS6D01G298400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G298400 chr6D 100.000 5743 0 0 937 6679 409340415 409346157 0.000000e+00 10606.0
1 TraesCS6D01G298400 chr6D 100.000 583 0 0 1 583 409339479 409340061 0.000000e+00 1077.0
2 TraesCS6D01G298400 chr6A 95.648 4090 120 25 2611 6678 554819619 554823672 0.000000e+00 6514.0
3 TraesCS6D01G298400 chr6A 92.779 1274 59 12 977 2232 554818165 554819423 0.000000e+00 1812.0
4 TraesCS6D01G298400 chr6A 90.115 435 23 10 49 464 554817277 554817710 1.270000e-151 547.0
5 TraesCS6D01G298400 chr6A 98.077 156 2 1 2270 2424 554819422 554819577 3.070000e-68 270.0
6 TraesCS6D01G298400 chr6B 95.500 4089 118 15 2611 6677 614307068 614311112 0.000000e+00 6471.0
7 TraesCS6D01G298400 chr6B 91.966 1307 52 21 942 2232 614305614 614306883 0.000000e+00 1783.0
8 TraesCS6D01G298400 chr6B 88.081 344 12 8 180 504 614304837 614305170 1.360000e-101 381.0
9 TraesCS6D01G298400 chr6B 96.795 156 4 1 2270 2424 614306882 614307037 6.640000e-65 259.0
10 TraesCS6D01G298400 chr6B 89.247 186 14 4 6330 6514 614580779 614580959 1.870000e-55 228.0
11 TraesCS6D01G298400 chr6B 82.386 176 24 6 2444 2616 505646365 505646536 5.400000e-31 147.0
12 TraesCS6D01G298400 chr7A 95.906 171 7 0 2443 2613 697131370 697131200 1.830000e-70 278.0
13 TraesCS6D01G298400 chr2A 94.340 159 8 1 2451 2609 652876237 652876394 6.690000e-60 243.0
14 TraesCS6D01G298400 chr2A 82.090 134 20 4 1 132 362069413 362069544 1.970000e-20 111.0
15 TraesCS6D01G298400 chr4A 91.566 166 14 0 2444 2609 742340121 742339956 5.210000e-56 230.0
16 TraesCS6D01G298400 chr5B 81.714 175 27 4 2444 2616 218757188 218757017 2.510000e-29 141.0
17 TraesCS6D01G298400 chr4B 81.818 176 25 6 2444 2616 295589281 295589452 2.510000e-29 141.0
18 TraesCS6D01G298400 chr4B 81.714 175 27 4 2444 2616 447275108 447274937 2.510000e-29 141.0
19 TraesCS6D01G298400 chr1B 81.714 175 27 4 2444 2616 213077505 213077676 2.510000e-29 141.0
20 TraesCS6D01G298400 chr1B 81.818 176 25 6 2444 2616 327678879 327678708 2.510000e-29 141.0
21 TraesCS6D01G298400 chr2D 85.714 105 12 3 1 104 294977956 294978058 2.550000e-19 108.0
22 TraesCS6D01G298400 chr3D 83.544 79 11 2 25 102 346092399 346092476 9.290000e-09 73.1
23 TraesCS6D01G298400 chr3B 84.286 70 9 2 34 102 445239506 445239574 4.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G298400 chr6D 409339479 409346157 6678 False 5841.50 10606 100.00000 1 6679 2 chr6D.!!$F1 6678
1 TraesCS6D01G298400 chr6A 554817277 554823672 6395 False 2285.75 6514 94.15475 49 6678 4 chr6A.!!$F1 6629
2 TraesCS6D01G298400 chr6B 614304837 614311112 6275 False 2223.50 6471 93.08550 180 6677 4 chr6B.!!$F3 6497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 521 0.178975 CCCGCCTCCTCTCTGTCTAT 60.179 60.000 0.0 0.0 0.00 1.98 F
1846 1927 0.463295 ATGATGCTTCCAGCCTGTCG 60.463 55.000 0.0 0.0 41.51 4.35 F
2598 2681 0.033920 GCCCAACCTTTTGCCTCAAG 59.966 55.000 0.0 0.0 0.00 3.02 F
2603 2686 0.890996 ACCTTTTGCCTCAAGCTCCG 60.891 55.000 0.0 0.0 44.23 4.63 F
2604 2687 1.211190 CTTTTGCCTCAAGCTCCGC 59.789 57.895 0.0 0.0 44.23 5.54 F
4807 4891 1.657751 GGCGGAATGGAGTCAAAGCC 61.658 60.000 0.0 0.0 36.32 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2324 0.246360 TGAGTCACGGCCACATACTG 59.754 55.000 2.24 0.0 0.00 2.74 R
3724 3808 3.301274 AGCAGTAGGAGGGTCTATTGTC 58.699 50.000 0.00 0.0 31.97 3.18 R
3880 3964 2.223782 ACGTCGCAAGGTGTAAACACTA 60.224 45.455 12.65 0.0 45.73 2.74 R
4330 4414 2.436417 GCCAACAGCATTAACTCCTCA 58.564 47.619 0.00 0.0 42.97 3.86 R
4824 4908 2.101582 AGGCCTGTAAAGCATCTACTCG 59.898 50.000 3.11 0.0 0.00 4.18 R
6356 6470 0.686789 AGGCCAAAGCAAATCCAACC 59.313 50.000 5.01 0.0 42.56 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.496133 GTAGCATGTTCAGAGCATCAATT 57.504 39.130 0.00 0.00 37.82 2.32
23 24 5.888105 GTAGCATGTTCAGAGCATCAATTT 58.112 37.500 0.00 0.00 37.82 1.82
24 25 5.401531 AGCATGTTCAGAGCATCAATTTT 57.598 34.783 0.00 0.00 37.82 1.82
25 26 5.168569 AGCATGTTCAGAGCATCAATTTTG 58.831 37.500 0.00 0.00 37.82 2.44
26 27 4.927425 GCATGTTCAGAGCATCAATTTTGT 59.073 37.500 0.00 0.00 37.82 2.83
27 28 5.407387 GCATGTTCAGAGCATCAATTTTGTT 59.593 36.000 0.00 0.00 37.82 2.83
28 29 6.073440 GCATGTTCAGAGCATCAATTTTGTTT 60.073 34.615 0.00 0.00 37.82 2.83
29 30 7.519328 GCATGTTCAGAGCATCAATTTTGTTTT 60.519 33.333 0.00 0.00 37.82 2.43
30 31 7.846644 TGTTCAGAGCATCAATTTTGTTTTT 57.153 28.000 0.00 0.00 37.82 1.94
31 32 7.908230 TGTTCAGAGCATCAATTTTGTTTTTC 58.092 30.769 0.00 0.00 37.82 2.29
32 33 7.011295 TGTTCAGAGCATCAATTTTGTTTTTCC 59.989 33.333 0.00 0.00 37.82 3.13
33 34 5.990996 TCAGAGCATCAATTTTGTTTTTCCC 59.009 36.000 0.00 0.00 37.82 3.97
34 35 5.179929 CAGAGCATCAATTTTGTTTTTCCCC 59.820 40.000 0.00 0.00 37.82 4.81
35 36 5.046288 AGCATCAATTTTGTTTTTCCCCA 57.954 34.783 0.00 0.00 0.00 4.96
36 37 5.633117 AGCATCAATTTTGTTTTTCCCCAT 58.367 33.333 0.00 0.00 0.00 4.00
37 38 5.474189 AGCATCAATTTTGTTTTTCCCCATG 59.526 36.000 0.00 0.00 0.00 3.66
38 39 5.472820 GCATCAATTTTGTTTTTCCCCATGA 59.527 36.000 0.00 0.00 0.00 3.07
39 40 6.568271 GCATCAATTTTGTTTTTCCCCATGAC 60.568 38.462 0.00 0.00 0.00 3.06
40 41 6.245890 TCAATTTTGTTTTTCCCCATGACT 57.754 33.333 0.00 0.00 0.00 3.41
41 42 6.657875 TCAATTTTGTTTTTCCCCATGACTT 58.342 32.000 0.00 0.00 0.00 3.01
42 43 7.115414 TCAATTTTGTTTTTCCCCATGACTTT 58.885 30.769 0.00 0.00 0.00 2.66
43 44 7.281999 TCAATTTTGTTTTTCCCCATGACTTTC 59.718 33.333 0.00 0.00 0.00 2.62
44 45 5.683876 TTTGTTTTTCCCCATGACTTTCA 57.316 34.783 0.00 0.00 0.00 2.69
45 46 4.664150 TGTTTTTCCCCATGACTTTCAC 57.336 40.909 0.00 0.00 0.00 3.18
46 47 4.026744 TGTTTTTCCCCATGACTTTCACA 58.973 39.130 0.00 0.00 0.00 3.58
47 48 4.142049 TGTTTTTCCCCATGACTTTCACAC 60.142 41.667 0.00 0.00 0.00 3.82
68 69 7.092137 ACACATGTGATTCGATGATGAAAAT 57.908 32.000 31.94 0.06 0.00 1.82
80 81 5.220154 CGATGATGAAAATTTGCAAGCACTC 60.220 40.000 2.14 0.00 0.00 3.51
111 112 5.186996 TCTCAATGTTTGCCAGAGAAAAC 57.813 39.130 0.00 0.00 36.92 2.43
113 114 3.960102 TCAATGTTTGCCAGAGAAAACCT 59.040 39.130 0.00 0.00 35.80 3.50
153 155 3.737266 TCGTATTTTATCGTTCATCCGGC 59.263 43.478 0.00 0.00 0.00 6.13
155 157 1.670791 TTTTATCGTTCATCCGGCCC 58.329 50.000 0.00 0.00 0.00 5.80
156 158 0.531090 TTTATCGTTCATCCGGCCCG 60.531 55.000 0.00 0.00 0.00 6.13
168 171 1.218316 CGGCCCGAGCTAAGAAACT 59.782 57.895 0.00 0.00 39.73 2.66
174 177 2.093447 CCCGAGCTAAGAAACTCCATGT 60.093 50.000 0.00 0.00 0.00 3.21
177 180 3.190874 GAGCTAAGAAACTCCATGTCCG 58.809 50.000 0.00 0.00 0.00 4.79
202 208 1.191647 GCAGGTATATTGCGTGCGTAC 59.808 52.381 8.26 0.00 37.85 3.67
216 222 3.376078 GTACGCACCACCCGGAGA 61.376 66.667 0.73 0.00 35.59 3.71
232 238 5.833667 ACCCGGAGAAAAGAAAGAAAGAAAT 59.166 36.000 0.73 0.00 0.00 2.17
416 452 3.090532 CCTTCCTTCCCTCCCCCG 61.091 72.222 0.00 0.00 0.00 5.73
417 453 2.040606 CTTCCTTCCCTCCCCCGA 59.959 66.667 0.00 0.00 0.00 5.14
482 518 3.844090 GCCCGCCTCCTCTCTGTC 61.844 72.222 0.00 0.00 0.00 3.51
484 520 1.227664 CCCGCCTCCTCTCTGTCTA 59.772 63.158 0.00 0.00 0.00 2.59
485 521 0.178975 CCCGCCTCCTCTCTGTCTAT 60.179 60.000 0.00 0.00 0.00 1.98
486 522 1.243902 CCGCCTCCTCTCTGTCTATC 58.756 60.000 0.00 0.00 0.00 2.08
487 523 1.243902 CGCCTCCTCTCTGTCTATCC 58.756 60.000 0.00 0.00 0.00 2.59
488 524 1.627864 GCCTCCTCTCTGTCTATCCC 58.372 60.000 0.00 0.00 0.00 3.85
489 525 1.146982 GCCTCCTCTCTGTCTATCCCT 59.853 57.143 0.00 0.00 0.00 4.20
490 526 2.817839 GCCTCCTCTCTGTCTATCCCTC 60.818 59.091 0.00 0.00 0.00 4.30
491 527 2.716424 CCTCCTCTCTGTCTATCCCTCT 59.284 54.545 0.00 0.00 0.00 3.69
492 528 3.244911 CCTCCTCTCTGTCTATCCCTCTC 60.245 56.522 0.00 0.00 0.00 3.20
493 529 2.714250 TCCTCTCTGTCTATCCCTCTCC 59.286 54.545 0.00 0.00 0.00 3.71
494 530 2.716424 CCTCTCTGTCTATCCCTCTCCT 59.284 54.545 0.00 0.00 0.00 3.69
495 531 3.244911 CCTCTCTGTCTATCCCTCTCCTC 60.245 56.522 0.00 0.00 0.00 3.71
496 532 2.714250 TCTCTGTCTATCCCTCTCCTCC 59.286 54.545 0.00 0.00 0.00 4.30
497 533 2.716424 CTCTGTCTATCCCTCTCCTCCT 59.284 54.545 0.00 0.00 0.00 3.69
498 534 2.714250 TCTGTCTATCCCTCTCCTCCTC 59.286 54.545 0.00 0.00 0.00 3.71
527 563 3.086600 CCCCCTCTCCTCAGCACC 61.087 72.222 0.00 0.00 0.00 5.01
528 564 3.465403 CCCCTCTCCTCAGCACCG 61.465 72.222 0.00 0.00 0.00 4.94
529 565 4.154347 CCCTCTCCTCAGCACCGC 62.154 72.222 0.00 0.00 0.00 5.68
530 566 4.154347 CCTCTCCTCAGCACCGCC 62.154 72.222 0.00 0.00 0.00 6.13
531 567 4.154347 CTCTCCTCAGCACCGCCC 62.154 72.222 0.00 0.00 0.00 6.13
532 568 4.704103 TCTCCTCAGCACCGCCCT 62.704 66.667 0.00 0.00 0.00 5.19
533 569 4.154347 CTCCTCAGCACCGCCCTC 62.154 72.222 0.00 0.00 0.00 4.30
550 586 2.951458 CCGGCACCTCGGTTTTTC 59.049 61.111 0.00 0.00 44.60 2.29
551 587 2.622962 CCGGCACCTCGGTTTTTCC 61.623 63.158 0.00 0.00 44.60 3.13
552 588 2.622962 CGGCACCTCGGTTTTTCCC 61.623 63.158 0.00 0.00 0.00 3.97
553 589 2.273179 GGCACCTCGGTTTTTCCCC 61.273 63.158 0.00 0.00 0.00 4.81
554 590 1.228459 GCACCTCGGTTTTTCCCCT 60.228 57.895 0.00 0.00 0.00 4.79
555 591 1.241990 GCACCTCGGTTTTTCCCCTC 61.242 60.000 0.00 0.00 0.00 4.30
556 592 0.608308 CACCTCGGTTTTTCCCCTCC 60.608 60.000 0.00 0.00 0.00 4.30
557 593 1.001269 CCTCGGTTTTTCCCCTCCC 60.001 63.158 0.00 0.00 0.00 4.30
558 594 1.376812 CTCGGTTTTTCCCCTCCCG 60.377 63.158 0.00 0.00 39.98 5.14
559 595 3.060000 CGGTTTTTCCCCTCCCGC 61.060 66.667 0.00 0.00 0.00 6.13
560 596 2.439245 GGTTTTTCCCCTCCCGCT 59.561 61.111 0.00 0.00 0.00 5.52
561 597 1.977009 GGTTTTTCCCCTCCCGCTG 60.977 63.158 0.00 0.00 0.00 5.18
562 598 1.977009 GTTTTTCCCCTCCCGCTGG 60.977 63.158 0.00 0.00 0.00 4.85
563 599 2.466186 TTTTTCCCCTCCCGCTGGT 61.466 57.895 0.00 0.00 0.00 4.00
564 600 1.135068 TTTTTCCCCTCCCGCTGGTA 61.135 55.000 0.00 0.00 0.00 3.25
565 601 0.917333 TTTTCCCCTCCCGCTGGTAT 60.917 55.000 0.00 0.00 0.00 2.73
566 602 1.342672 TTTCCCCTCCCGCTGGTATC 61.343 60.000 0.00 0.00 0.00 2.24
567 603 3.616721 CCCCTCCCGCTGGTATCG 61.617 72.222 0.00 0.00 0.00 2.92
568 604 2.520982 CCCTCCCGCTGGTATCGA 60.521 66.667 0.00 0.00 0.00 3.59
569 605 2.728817 CCTCCCGCTGGTATCGAC 59.271 66.667 0.00 0.00 0.00 4.20
570 606 2.331805 CTCCCGCTGGTATCGACG 59.668 66.667 0.00 0.00 0.00 5.12
571 607 3.825833 CTCCCGCTGGTATCGACGC 62.826 68.421 0.00 0.00 0.00 5.19
572 608 4.201679 CCCGCTGGTATCGACGCA 62.202 66.667 0.00 0.00 0.00 5.24
573 609 2.655364 CCGCTGGTATCGACGCAG 60.655 66.667 0.00 0.00 0.00 5.18
574 610 2.407616 CGCTGGTATCGACGCAGA 59.592 61.111 4.64 0.00 0.00 4.26
575 611 1.655654 CGCTGGTATCGACGCAGAG 60.656 63.158 4.64 0.00 0.00 3.35
576 612 1.299468 GCTGGTATCGACGCAGAGG 60.299 63.158 4.64 0.00 0.00 3.69
577 613 1.360551 CTGGTATCGACGCAGAGGG 59.639 63.158 0.00 0.00 0.00 4.30
578 614 2.027751 GGTATCGACGCAGAGGGC 59.972 66.667 0.00 0.00 39.90 5.19
579 615 2.027751 GTATCGACGCAGAGGGCC 59.972 66.667 0.00 0.00 40.31 5.80
580 616 3.592814 TATCGACGCAGAGGGCCG 61.593 66.667 0.00 0.00 40.31 6.13
1478 1556 7.141363 AGAGAACTAATGTGTTGATTTGTTGC 58.859 34.615 0.00 0.00 33.32 4.17
1489 1567 1.471684 GATTTGTTGCTGCCTCCTCTG 59.528 52.381 0.00 0.00 0.00 3.35
1580 1661 4.637977 GGAGTCCTTCCTAATTTGCTTCTG 59.362 45.833 0.41 0.00 43.16 3.02
1585 1666 4.142513 CCTTCCTAATTTGCTTCTGACTGC 60.143 45.833 0.00 0.00 0.00 4.40
1588 1669 3.503363 CCTAATTTGCTTCTGACTGCACA 59.497 43.478 4.33 0.00 39.05 4.57
1615 1696 2.027561 TGTGCTACTGGTGGGTAATGTC 60.028 50.000 0.00 0.00 0.00 3.06
1627 1708 3.054434 TGGGTAATGTCTGGAATCTGTGG 60.054 47.826 0.00 0.00 0.00 4.17
1659 1740 1.363807 CTGCACGATCGAGGGCATA 59.636 57.895 24.34 6.58 35.45 3.14
1680 1761 4.222124 ACCTGTGGATGTTCTCATTACC 57.778 45.455 0.00 0.00 34.06 2.85
1774 1855 3.231818 AGTGAGGTGCTAACTGTGTACT 58.768 45.455 0.00 0.00 0.00 2.73
1798 1879 9.507329 ACTGTAATTTATAGCAATCCCATACAG 57.493 33.333 0.00 0.00 41.21 2.74
1800 1881 9.283768 TGTAATTTATAGCAATCCCATACAGTG 57.716 33.333 0.00 0.00 0.00 3.66
1846 1927 0.463295 ATGATGCTTCCAGCCTGTCG 60.463 55.000 0.00 0.00 41.51 4.35
1869 1950 2.686405 TCTGCCTTGAATTGCATGCTAG 59.314 45.455 20.33 6.42 36.79 3.42
1890 1971 4.677673 GCTGATTAGCCATTTTGGGAAT 57.322 40.909 0.00 0.00 44.33 3.01
1925 2006 3.437049 GGAACTCAGGTAACACAATGCTC 59.563 47.826 0.00 0.00 41.41 4.26
1931 2012 4.081917 TCAGGTAACACAATGCTCGTCATA 60.082 41.667 0.00 0.00 41.41 2.15
1932 2013 4.811024 CAGGTAACACAATGCTCGTCATAT 59.189 41.667 0.00 0.00 41.41 1.78
1933 2014 5.983118 CAGGTAACACAATGCTCGTCATATA 59.017 40.000 0.00 0.00 41.41 0.86
1934 2015 6.646653 CAGGTAACACAATGCTCGTCATATAT 59.353 38.462 0.00 0.00 41.41 0.86
1935 2016 6.646653 AGGTAACACAATGCTCGTCATATATG 59.353 38.462 6.36 6.36 41.41 1.78
1936 2017 5.929697 AACACAATGCTCGTCATATATGG 57.070 39.130 12.78 0.00 34.33 2.74
1937 2018 3.748048 ACACAATGCTCGTCATATATGGC 59.252 43.478 12.78 10.12 34.33 4.40
1966 2047 2.494073 AGGAGGCGAGTCTAAGAACAAG 59.506 50.000 0.00 0.00 0.00 3.16
1968 2049 3.428316 GGAGGCGAGTCTAAGAACAAGAG 60.428 52.174 0.00 0.00 0.00 2.85
1977 2058 7.697291 CGAGTCTAAGAACAAGAGTTATGTACC 59.303 40.741 0.00 0.00 38.30 3.34
2047 2128 6.574073 GCCACAGGATTGGACATTTCAATTTA 60.574 38.462 0.00 0.00 39.24 1.40
2086 2167 9.090692 GATTGCTTGTGACTTTGCAAATTATAT 57.909 29.630 13.23 0.00 46.31 0.86
2088 2169 8.909708 TGCTTGTGACTTTGCAAATTATATAC 57.090 30.769 13.23 7.17 32.12 1.47
2089 2170 7.696035 TGCTTGTGACTTTGCAAATTATATACG 59.304 33.333 13.23 0.59 32.12 3.06
2092 2173 9.976255 TTGTGACTTTGCAAATTATATACGTAC 57.024 29.630 13.23 4.95 0.00 3.67
2113 2194 6.238320 CGTACGTAGAACCTATGTCTAGCTTT 60.238 42.308 7.22 0.00 0.00 3.51
2192 2273 2.924290 GAGTCGACTCTAAACACATGGC 59.076 50.000 33.28 7.27 39.81 4.40
2210 2292 1.616994 GGCTGAAGTGGTATGCCCTTT 60.617 52.381 0.00 0.00 37.81 3.11
2232 2314 2.167075 GGCCAAATAGCATGCTTGAAGT 59.833 45.455 28.02 3.91 0.00 3.01
2233 2315 3.184541 GCCAAATAGCATGCTTGAAGTG 58.815 45.455 28.02 16.06 0.00 3.16
2234 2316 3.367703 GCCAAATAGCATGCTTGAAGTGT 60.368 43.478 28.02 0.44 0.00 3.55
2235 2317 4.171005 CCAAATAGCATGCTTGAAGTGTG 58.829 43.478 28.02 13.69 0.00 3.82
2236 2318 4.321452 CCAAATAGCATGCTTGAAGTGTGT 60.321 41.667 28.02 0.00 0.00 3.72
2237 2319 5.106197 CCAAATAGCATGCTTGAAGTGTGTA 60.106 40.000 28.02 3.33 0.00 2.90
2238 2320 5.808042 AATAGCATGCTTGAAGTGTGTAG 57.192 39.130 28.02 0.00 0.00 2.74
2239 2321 3.131709 AGCATGCTTGAAGTGTGTAGT 57.868 42.857 16.30 0.00 0.00 2.73
2240 2322 3.480470 AGCATGCTTGAAGTGTGTAGTT 58.520 40.909 16.30 0.00 0.00 2.24
2241 2323 3.885297 AGCATGCTTGAAGTGTGTAGTTT 59.115 39.130 16.30 0.00 0.00 2.66
2242 2324 4.023707 AGCATGCTTGAAGTGTGTAGTTTC 60.024 41.667 16.30 0.00 0.00 2.78
2243 2325 4.261155 GCATGCTTGAAGTGTGTAGTTTCA 60.261 41.667 11.37 0.00 0.00 2.69
2244 2326 5.446709 CATGCTTGAAGTGTGTAGTTTCAG 58.553 41.667 0.00 0.00 32.92 3.02
2245 2327 4.513442 TGCTTGAAGTGTGTAGTTTCAGT 58.487 39.130 0.00 0.00 32.92 3.41
2246 2328 5.666462 TGCTTGAAGTGTGTAGTTTCAGTA 58.334 37.500 0.00 0.00 32.92 2.74
2247 2329 6.288294 TGCTTGAAGTGTGTAGTTTCAGTAT 58.712 36.000 0.00 0.00 32.92 2.12
2248 2330 6.202762 TGCTTGAAGTGTGTAGTTTCAGTATG 59.797 38.462 0.00 0.00 32.92 2.39
2249 2331 6.202954 GCTTGAAGTGTGTAGTTTCAGTATGT 59.797 38.462 0.00 0.00 37.40 2.29
2250 2332 7.477144 TTGAAGTGTGTAGTTTCAGTATGTG 57.523 36.000 0.00 0.00 37.40 3.21
2251 2333 5.989168 TGAAGTGTGTAGTTTCAGTATGTGG 59.011 40.000 0.00 0.00 37.40 4.17
2252 2334 4.315803 AGTGTGTAGTTTCAGTATGTGGC 58.684 43.478 0.00 0.00 37.40 5.01
2253 2335 3.435671 GTGTGTAGTTTCAGTATGTGGCC 59.564 47.826 0.00 0.00 37.40 5.36
2254 2336 2.671396 GTGTAGTTTCAGTATGTGGCCG 59.329 50.000 0.00 0.00 37.40 6.13
2255 2337 2.300723 TGTAGTTTCAGTATGTGGCCGT 59.699 45.455 0.00 0.00 37.40 5.68
2256 2338 1.808411 AGTTTCAGTATGTGGCCGTG 58.192 50.000 0.00 0.00 37.40 4.94
2257 2339 1.346395 AGTTTCAGTATGTGGCCGTGA 59.654 47.619 0.00 0.00 37.40 4.35
2258 2340 1.463444 GTTTCAGTATGTGGCCGTGAC 59.537 52.381 0.00 0.00 37.40 3.67
2259 2341 0.973632 TTCAGTATGTGGCCGTGACT 59.026 50.000 0.00 0.00 37.40 3.41
2260 2342 0.530744 TCAGTATGTGGCCGTGACTC 59.469 55.000 0.00 0.00 37.40 3.36
2261 2343 0.246360 CAGTATGTGGCCGTGACTCA 59.754 55.000 0.00 0.00 0.00 3.41
2262 2344 0.246635 AGTATGTGGCCGTGACTCAC 59.753 55.000 0.00 0.00 0.00 3.51
2263 2345 0.739813 GTATGTGGCCGTGACTCACC 60.740 60.000 0.00 0.00 0.00 4.02
2264 2346 0.902984 TATGTGGCCGTGACTCACCT 60.903 55.000 0.00 0.00 0.00 4.00
2265 2347 2.048127 GTGGCCGTGACTCACCTC 60.048 66.667 0.00 0.00 0.00 3.85
2266 2348 2.523168 TGGCCGTGACTCACCTCA 60.523 61.111 0.00 0.00 0.00 3.86
2267 2349 1.913262 TGGCCGTGACTCACCTCAT 60.913 57.895 0.00 0.00 0.00 2.90
2268 2350 1.448540 GGCCGTGACTCACCTCATG 60.449 63.158 3.50 0.00 0.00 3.07
2269 2351 1.591703 GCCGTGACTCACCTCATGA 59.408 57.895 3.50 0.00 35.45 3.07
2329 2411 7.061441 GCATGATACATTATGTTTATGCTGTGC 59.939 37.037 22.04 12.15 37.08 4.57
2344 2426 5.963176 TGCTGTGCTCATTTTTCTGAATA 57.037 34.783 0.00 0.00 0.00 1.75
2424 2507 7.988737 CATTCTTTATGCAATCACCTTGTCTA 58.011 34.615 0.00 0.00 37.18 2.59
2426 2509 9.851686 ATTCTTTATGCAATCACCTTGTCTATA 57.148 29.630 0.00 0.00 37.18 1.31
2427 2510 9.679661 TTCTTTATGCAATCACCTTGTCTATAA 57.320 29.630 0.00 0.00 37.18 0.98
2428 2511 9.679661 TCTTTATGCAATCACCTTGTCTATAAA 57.320 29.630 0.00 0.00 37.18 1.40
2429 2512 9.722056 CTTTATGCAATCACCTTGTCTATAAAC 57.278 33.333 0.00 0.00 37.18 2.01
2430 2513 8.800370 TTATGCAATCACCTTGTCTATAAACA 57.200 30.769 0.00 0.00 37.18 2.83
2432 2515 7.701539 TGCAATCACCTTGTCTATAAACATT 57.298 32.000 0.00 0.00 37.18 2.71
2433 2516 7.761409 TGCAATCACCTTGTCTATAAACATTC 58.239 34.615 0.00 0.00 37.18 2.67
2435 2518 8.125448 GCAATCACCTTGTCTATAAACATTCTC 58.875 37.037 0.00 0.00 37.18 2.87
2436 2519 9.388506 CAATCACCTTGTCTATAAACATTCTCT 57.611 33.333 0.00 0.00 0.00 3.10
2437 2520 9.606631 AATCACCTTGTCTATAAACATTCTCTC 57.393 33.333 0.00 0.00 0.00 3.20
2438 2521 8.134202 TCACCTTGTCTATAAACATTCTCTCA 57.866 34.615 0.00 0.00 0.00 3.27
2439 2522 8.253810 TCACCTTGTCTATAAACATTCTCTCAG 58.746 37.037 0.00 0.00 0.00 3.35
2440 2523 7.493971 CACCTTGTCTATAAACATTCTCTCAGG 59.506 40.741 0.00 0.00 0.00 3.86
2441 2524 7.400339 ACCTTGTCTATAAACATTCTCTCAGGA 59.600 37.037 0.00 0.00 0.00 3.86
2443 2526 7.113658 TGTCTATAAACATTCTCTCAGGACC 57.886 40.000 0.00 0.00 0.00 4.46
2445 2528 7.147828 TGTCTATAAACATTCTCTCAGGACCAG 60.148 40.741 0.00 0.00 0.00 4.00
2446 2529 3.710209 AAACATTCTCTCAGGACCAGG 57.290 47.619 0.00 0.00 0.00 4.45
2447 2530 1.577736 ACATTCTCTCAGGACCAGGG 58.422 55.000 0.00 0.00 0.00 4.45
2448 2531 0.835941 CATTCTCTCAGGACCAGGGG 59.164 60.000 0.00 0.00 0.00 4.79
2450 2533 3.465403 CTCTCAGGACCAGGGGCG 61.465 72.222 0.00 0.00 0.00 6.13
2466 2549 4.208686 CGGAGCTACGTGAGGGCC 62.209 72.222 11.15 0.00 35.19 5.80
2467 2550 3.075005 GGAGCTACGTGAGGGCCA 61.075 66.667 6.18 0.00 35.19 5.36
2468 2551 2.656069 GGAGCTACGTGAGGGCCAA 61.656 63.158 6.18 0.00 35.19 4.52
2469 2552 1.448013 GAGCTACGTGAGGGCCAAC 60.448 63.158 6.18 2.23 35.19 3.77
2470 2553 2.167398 GAGCTACGTGAGGGCCAACA 62.167 60.000 6.18 2.21 35.19 3.33
2471 2554 2.033194 GCTACGTGAGGGCCAACAC 61.033 63.158 19.21 19.21 0.00 3.32
2475 2558 3.660111 GTGAGGGCCAACACGTGC 61.660 66.667 17.22 0.18 0.00 5.34
2476 2559 3.872603 TGAGGGCCAACACGTGCT 61.873 61.111 17.22 0.00 0.00 4.40
2477 2560 3.050275 GAGGGCCAACACGTGCTC 61.050 66.667 17.22 9.16 0.00 4.26
2478 2561 4.643387 AGGGCCAACACGTGCTCC 62.643 66.667 17.22 11.20 0.00 4.70
2508 2591 2.858622 CGCAGCAGGATTTTCCTCA 58.141 52.632 0.00 0.00 45.66 3.86
2509 2592 1.386533 CGCAGCAGGATTTTCCTCAT 58.613 50.000 0.00 0.00 45.66 2.90
2510 2593 1.747355 CGCAGCAGGATTTTCCTCATT 59.253 47.619 0.00 0.00 45.66 2.57
2511 2594 2.479049 CGCAGCAGGATTTTCCTCATTG 60.479 50.000 0.00 0.00 45.66 2.82
2512 2595 2.494870 GCAGCAGGATTTTCCTCATTGT 59.505 45.455 0.00 0.00 45.66 2.71
2513 2596 3.696051 GCAGCAGGATTTTCCTCATTGTA 59.304 43.478 0.00 0.00 45.66 2.41
2514 2597 4.439289 GCAGCAGGATTTTCCTCATTGTAC 60.439 45.833 0.00 0.00 45.66 2.90
2515 2598 4.701651 CAGCAGGATTTTCCTCATTGTACA 59.298 41.667 0.00 0.00 45.66 2.90
2516 2599 4.702131 AGCAGGATTTTCCTCATTGTACAC 59.298 41.667 0.00 0.00 45.66 2.90
2517 2600 4.702131 GCAGGATTTTCCTCATTGTACACT 59.298 41.667 0.00 0.00 45.66 3.55
2518 2601 5.183904 GCAGGATTTTCCTCATTGTACACTT 59.816 40.000 0.00 0.00 45.66 3.16
2519 2602 6.374333 GCAGGATTTTCCTCATTGTACACTTA 59.626 38.462 0.00 0.00 45.66 2.24
2520 2603 7.414540 GCAGGATTTTCCTCATTGTACACTTAG 60.415 40.741 0.00 0.00 45.66 2.18
2521 2604 7.607991 CAGGATTTTCCTCATTGTACACTTAGT 59.392 37.037 0.00 0.00 45.66 2.24
2522 2605 8.164070 AGGATTTTCCTCATTGTACACTTAGTT 58.836 33.333 0.00 0.00 45.66 2.24
2523 2606 8.793592 GGATTTTCCTCATTGTACACTTAGTTT 58.206 33.333 0.00 0.00 32.53 2.66
2525 2608 9.965824 ATTTTCCTCATTGTACACTTAGTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
2526 2609 7.504924 TTCCTCATTGTACACTTAGTTTTGG 57.495 36.000 0.00 0.00 0.00 3.28
2527 2610 6.001460 TCCTCATTGTACACTTAGTTTTGGG 58.999 40.000 0.00 0.00 0.00 4.12
2528 2611 5.335661 CCTCATTGTACACTTAGTTTTGGGC 60.336 44.000 0.00 0.00 0.00 5.36
2529 2612 5.381757 TCATTGTACACTTAGTTTTGGGCT 58.618 37.500 0.00 0.00 0.00 5.19
2530 2613 5.240623 TCATTGTACACTTAGTTTTGGGCTG 59.759 40.000 0.00 0.00 0.00 4.85
2531 2614 4.159244 TGTACACTTAGTTTTGGGCTGT 57.841 40.909 0.00 0.00 0.00 4.40
2532 2615 4.131596 TGTACACTTAGTTTTGGGCTGTC 58.868 43.478 0.00 0.00 0.00 3.51
2533 2616 2.583143 ACACTTAGTTTTGGGCTGTCC 58.417 47.619 0.00 0.00 0.00 4.02
2534 2617 2.092103 ACACTTAGTTTTGGGCTGTCCA 60.092 45.455 0.00 0.00 45.43 4.02
2541 2624 3.164977 TGGGCTGTCCAACGACCA 61.165 61.111 0.00 0.00 43.84 4.02
2542 2625 2.351276 GGGCTGTCCAACGACCAT 59.649 61.111 0.00 0.00 38.32 3.55
2543 2626 1.745489 GGGCTGTCCAACGACCATC 60.745 63.158 0.00 0.00 38.32 3.51
2544 2627 1.003839 GGCTGTCCAACGACCATCA 60.004 57.895 0.00 0.00 38.32 3.07
2545 2628 0.605319 GGCTGTCCAACGACCATCAA 60.605 55.000 0.00 0.00 38.32 2.57
2546 2629 1.234821 GCTGTCCAACGACCATCAAA 58.765 50.000 0.00 0.00 38.32 2.69
2547 2630 1.197721 GCTGTCCAACGACCATCAAAG 59.802 52.381 0.00 0.00 38.32 2.77
2548 2631 1.806542 CTGTCCAACGACCATCAAAGG 59.193 52.381 0.00 0.00 38.32 3.11
2549 2632 1.165270 GTCCAACGACCATCAAAGGG 58.835 55.000 0.00 0.00 32.40 3.95
2550 2633 0.768622 TCCAACGACCATCAAAGGGT 59.231 50.000 0.00 0.00 42.61 4.34
2551 2634 1.979308 TCCAACGACCATCAAAGGGTA 59.021 47.619 0.00 0.00 39.19 3.69
2552 2635 2.372504 TCCAACGACCATCAAAGGGTAA 59.627 45.455 0.00 0.00 39.19 2.85
2553 2636 3.009695 TCCAACGACCATCAAAGGGTAAT 59.990 43.478 0.00 0.00 39.19 1.89
2554 2637 3.377172 CCAACGACCATCAAAGGGTAATC 59.623 47.826 0.00 0.00 39.19 1.75
2555 2638 4.261801 CAACGACCATCAAAGGGTAATCT 58.738 43.478 0.00 0.00 39.19 2.40
2556 2639 4.138487 ACGACCATCAAAGGGTAATCTC 57.862 45.455 0.00 0.00 39.19 2.75
2557 2640 3.775316 ACGACCATCAAAGGGTAATCTCT 59.225 43.478 0.00 0.00 39.19 3.10
2558 2641 4.960469 ACGACCATCAAAGGGTAATCTCTA 59.040 41.667 0.00 0.00 39.19 2.43
2559 2642 5.602978 ACGACCATCAAAGGGTAATCTCTAT 59.397 40.000 0.00 0.00 39.19 1.98
2560 2643 6.781014 ACGACCATCAAAGGGTAATCTCTATA 59.219 38.462 0.00 0.00 39.19 1.31
2561 2644 7.039644 ACGACCATCAAAGGGTAATCTCTATAG 60.040 40.741 0.00 0.00 39.19 1.31
2562 2645 7.176865 CGACCATCAAAGGGTAATCTCTATAGA 59.823 40.741 1.69 1.69 39.19 1.98
2563 2646 8.980832 ACCATCAAAGGGTAATCTCTATAGAT 57.019 34.615 2.11 0.00 44.67 1.98
2575 2658 5.991933 TCTCTATAGATTAGCCAGCTTGG 57.008 43.478 2.11 0.00 41.55 3.61
2590 2673 4.548513 TGGCCCGCCCAACCTTTT 62.549 61.111 0.00 0.00 41.82 2.27
2591 2674 4.002506 GGCCCGCCCAACCTTTTG 62.003 66.667 0.00 0.00 0.00 2.44
2592 2675 4.680237 GCCCGCCCAACCTTTTGC 62.680 66.667 0.00 0.00 0.00 3.68
2593 2676 4.002506 CCCGCCCAACCTTTTGCC 62.003 66.667 0.00 0.00 0.00 4.52
2594 2677 2.917227 CCGCCCAACCTTTTGCCT 60.917 61.111 0.00 0.00 0.00 4.75
2595 2678 2.650778 CGCCCAACCTTTTGCCTC 59.349 61.111 0.00 0.00 0.00 4.70
2596 2679 2.199652 CGCCCAACCTTTTGCCTCA 61.200 57.895 0.00 0.00 0.00 3.86
2597 2680 1.743321 CGCCCAACCTTTTGCCTCAA 61.743 55.000 0.00 0.00 0.00 3.02
2598 2681 0.033920 GCCCAACCTTTTGCCTCAAG 59.966 55.000 0.00 0.00 0.00 3.02
2599 2682 0.033920 CCCAACCTTTTGCCTCAAGC 59.966 55.000 0.00 0.00 44.14 4.01
2600 2683 1.043022 CCAACCTTTTGCCTCAAGCT 58.957 50.000 0.00 0.00 44.23 3.74
2601 2684 1.000171 CCAACCTTTTGCCTCAAGCTC 60.000 52.381 0.00 0.00 44.23 4.09
2602 2685 1.000171 CAACCTTTTGCCTCAAGCTCC 60.000 52.381 0.00 0.00 44.23 4.70
2603 2686 0.890996 ACCTTTTGCCTCAAGCTCCG 60.891 55.000 0.00 0.00 44.23 4.63
2604 2687 1.211190 CTTTTGCCTCAAGCTCCGC 59.789 57.895 0.00 0.00 44.23 5.54
2605 2688 2.205243 CTTTTGCCTCAAGCTCCGCC 62.205 60.000 0.00 0.00 44.23 6.13
2606 2689 2.974692 TTTTGCCTCAAGCTCCGCCA 62.975 55.000 0.00 0.00 44.23 5.69
2607 2690 4.704833 TGCCTCAAGCTCCGCCAC 62.705 66.667 0.00 0.00 44.23 5.01
2608 2691 4.400961 GCCTCAAGCTCCGCCACT 62.401 66.667 0.00 0.00 38.99 4.00
2609 2692 3.019003 GCCTCAAGCTCCGCCACTA 62.019 63.158 0.00 0.00 38.99 2.74
2638 2722 9.630098 CAGGACGTCTTATTTAGTAGTACAAAA 57.370 33.333 16.46 0.00 0.00 2.44
2639 2723 9.631452 AGGACGTCTTATTTAGTAGTACAAAAC 57.369 33.333 16.46 0.00 0.00 2.43
2651 2735 4.852134 AGTACAAAACATTCATGCAGCA 57.148 36.364 0.00 0.00 0.00 4.41
2711 2795 7.556844 TCTCTTTCCTTGAGGTGTTATATGAC 58.443 38.462 0.00 0.00 36.34 3.06
2749 2833 2.542020 TGTTCGGTTCTGATCTTGCA 57.458 45.000 0.00 0.00 0.00 4.08
2784 2868 8.974292 ATATATACCCAGAGTACATGGTTCTT 57.026 34.615 14.14 2.07 35.96 2.52
3674 3758 3.152341 CCTGACACTTGCTGGAAGATTT 58.848 45.455 16.13 0.00 34.07 2.17
3676 3760 3.817084 CTGACACTTGCTGGAAGATTTCA 59.183 43.478 16.13 12.25 34.07 2.69
3706 3790 5.249393 AGAACTTGGAGCAAGAAAGGATCTA 59.751 40.000 0.00 0.00 43.42 1.98
3724 3808 8.115490 AGGATCTAAGAAATGTTTTGACCTTG 57.885 34.615 0.00 0.00 0.00 3.61
3880 3964 2.303175 GAGGCTCAGATTCGGTCTACT 58.697 52.381 10.25 0.00 34.69 2.57
3979 4063 2.553247 GGTAGACAGGCTTGCCTTTTCT 60.553 50.000 20.21 20.21 0.00 2.52
4258 4342 2.023673 CTTGACACTTCAAAGCCCACA 58.976 47.619 0.00 0.00 41.34 4.17
4330 4414 6.045072 AGGAATGATGCATGTTTCATTGTT 57.955 33.333 22.09 11.82 41.42 2.83
4339 4423 5.534278 TGCATGTTTCATTGTTGAGGAGTTA 59.466 36.000 0.00 0.00 32.27 2.24
4807 4891 1.657751 GGCGGAATGGAGTCAAAGCC 61.658 60.000 0.00 0.00 36.32 4.35
4957 5041 1.792757 TTGGGGAGGCTGCTGAACAT 61.793 55.000 5.84 0.00 0.00 2.71
5063 5147 7.005902 TGAGGTAATAATGGTGCATCATCATT 58.994 34.615 14.06 13.44 45.60 2.57
5088 5172 5.761165 TTACTTCCCACAACTAAGTTTGC 57.239 39.130 0.00 0.00 35.23 3.68
5092 5178 1.000274 CCCACAACTAAGTTTGCTGGC 60.000 52.381 0.00 0.00 31.53 4.85
5136 5223 3.131400 GTGGTTTTACTTTTGCAGACCCA 59.869 43.478 0.00 0.00 0.00 4.51
5137 5224 3.964031 TGGTTTTACTTTTGCAGACCCAT 59.036 39.130 0.00 0.00 0.00 4.00
5235 5322 8.227507 ACTTTGCCCCTAATTCTCATGTAATAT 58.772 33.333 0.00 0.00 0.00 1.28
5318 5405 7.633193 ACGGAGGATATACTATGATGAAGTC 57.367 40.000 0.00 0.00 0.00 3.01
5383 5470 3.284323 GCTTGATGCATGCAGGAATAG 57.716 47.619 26.69 17.65 42.31 1.73
5510 5600 1.337635 GGAGCAACTGAGACTGTGGAG 60.338 57.143 0.00 0.00 0.00 3.86
5711 5801 4.201960 GCTCGTCATGACAGAGAACTATCA 60.202 45.833 32.81 9.38 33.96 2.15
5850 5940 7.511268 AGATACTCCTATCGTTACTGTTCTCT 58.489 38.462 0.00 0.00 34.87 3.10
5884 5974 0.324552 TCCCTGTGGCATCCAAATGG 60.325 55.000 0.00 0.00 34.18 3.16
5912 6002 3.227614 GGTCAAGTGGCCTTCCTTTTTA 58.772 45.455 3.32 0.00 36.72 1.52
6050 6155 3.928375 GTGGGTTCATGCATGATGTTTTC 59.072 43.478 29.13 15.57 36.56 2.29
6249 6357 8.375493 TGGTTATAGAATCCTACTCTTGTTGT 57.625 34.615 0.00 0.00 0.00 3.32
6250 6358 8.258007 TGGTTATAGAATCCTACTCTTGTTGTG 58.742 37.037 0.00 0.00 0.00 3.33
6251 6359 7.224949 GGTTATAGAATCCTACTCTTGTTGTGC 59.775 40.741 0.00 0.00 0.00 4.57
6252 6360 3.589988 AGAATCCTACTCTTGTTGTGCG 58.410 45.455 0.00 0.00 0.00 5.34
6253 6361 1.726853 ATCCTACTCTTGTTGTGCGC 58.273 50.000 0.00 0.00 0.00 6.09
6254 6362 0.320421 TCCTACTCTTGTTGTGCGCC 60.320 55.000 4.18 0.00 0.00 6.53
6255 6363 0.320771 CCTACTCTTGTTGTGCGCCT 60.321 55.000 4.18 0.00 0.00 5.52
6256 6364 1.071605 CTACTCTTGTTGTGCGCCTC 58.928 55.000 4.18 0.00 0.00 4.70
6257 6365 0.391228 TACTCTTGTTGTGCGCCTCA 59.609 50.000 4.18 0.67 0.00 3.86
6258 6366 1.160329 ACTCTTGTTGTGCGCCTCAC 61.160 55.000 4.18 0.00 45.82 3.51
6259 6367 1.845809 CTCTTGTTGTGCGCCTCACC 61.846 60.000 4.18 0.00 45.03 4.02
6260 6368 1.893808 CTTGTTGTGCGCCTCACCT 60.894 57.895 4.18 0.00 45.03 4.00
6261 6369 2.121564 CTTGTTGTGCGCCTCACCTG 62.122 60.000 4.18 0.00 45.03 4.00
6262 6370 3.357079 GTTGTGCGCCTCACCTGG 61.357 66.667 4.18 0.00 45.03 4.45
6263 6371 3.872603 TTGTGCGCCTCACCTGGT 61.873 61.111 4.18 0.00 45.03 4.00
6264 6372 3.414136 TTGTGCGCCTCACCTGGTT 62.414 57.895 4.18 0.00 45.03 3.67
6265 6373 3.357079 GTGCGCCTCACCTGGTTG 61.357 66.667 4.18 0.00 39.79 3.77
6333 6447 1.067743 CTCTGCGTAGAGTGCACACG 61.068 60.000 21.04 20.60 44.43 4.49
6356 6470 2.198406 TCCGTTTGTTCTGTTGAGTCG 58.802 47.619 0.00 0.00 0.00 4.18
6479 6597 0.597568 TGGTACGGAAATGACGTCGT 59.402 50.000 11.62 7.97 44.37 4.34
6520 6658 4.202050 CGGAATTCCTTGGGATGAACAATC 60.202 45.833 22.05 0.00 34.19 2.67
6521 6659 4.958581 GGAATTCCTTGGGATGAACAATCT 59.041 41.667 17.73 0.00 35.43 2.40
6522 6660 6.129179 GGAATTCCTTGGGATGAACAATCTA 58.871 40.000 17.73 0.00 35.43 1.98
6523 6661 6.779539 GGAATTCCTTGGGATGAACAATCTAT 59.220 38.462 17.73 0.00 35.43 1.98
6524 6662 7.944554 GGAATTCCTTGGGATGAACAATCTATA 59.055 37.037 17.73 0.00 35.43 1.31
6525 6663 9.525826 GAATTCCTTGGGATGAACAATCTATAT 57.474 33.333 0.00 0.00 35.43 0.86
6526 6664 9.887862 AATTCCTTGGGATGAACAATCTATATT 57.112 29.630 0.00 0.00 35.43 1.28
6527 6665 9.887862 ATTCCTTGGGATGAACAATCTATATTT 57.112 29.630 0.00 0.00 35.43 1.40
6528 6666 9.713684 TTCCTTGGGATGAACAATCTATATTTT 57.286 29.630 0.00 0.00 35.43 1.82
6529 6667 9.354673 TCCTTGGGATGAACAATCTATATTTTC 57.645 33.333 0.00 0.00 35.43 2.29
6530 6668 9.359653 CCTTGGGATGAACAATCTATATTTTCT 57.640 33.333 0.00 0.00 35.43 2.52
6533 6671 8.632679 TGGGATGAACAATCTATATTTTCTTGC 58.367 33.333 0.00 0.00 35.43 4.01
6534 6672 8.084684 GGGATGAACAATCTATATTTTCTTGCC 58.915 37.037 0.00 0.00 35.43 4.52
6535 6673 8.632679 GGATGAACAATCTATATTTTCTTGCCA 58.367 33.333 0.00 0.00 35.43 4.92
6536 6674 9.455847 GATGAACAATCTATATTTTCTTGCCAC 57.544 33.333 0.00 0.00 32.01 5.01
6537 6675 8.347004 TGAACAATCTATATTTTCTTGCCACA 57.653 30.769 0.00 0.00 0.00 4.17
6538 6676 8.970020 TGAACAATCTATATTTTCTTGCCACAT 58.030 29.630 0.00 0.00 0.00 3.21
6586 6724 5.232202 GCTCATCGAACGAATGAATACTTGA 59.768 40.000 0.12 0.00 0.00 3.02
6618 6756 8.400947 TGTTTTGATCTCTTCAGACAGAAAAAG 58.599 33.333 0.00 0.00 35.40 2.27
6651 6789 3.433615 CGCTAGAAAGTTTCTGAACCTGG 59.566 47.826 25.27 4.15 40.94 4.45
6652 6790 4.642429 GCTAGAAAGTTTCTGAACCTGGA 58.358 43.478 25.27 4.58 40.94 3.86
6678 6816 5.069648 TCCAGTTTTATCTGCATCGAGAGAT 59.930 40.000 8.84 8.84 40.84 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.496133 AATTGATGCTCTGAACATGCTAC 57.504 39.130 0.00 0.00 0.00 3.58
1 2 6.071784 ACAAAATTGATGCTCTGAACATGCTA 60.072 34.615 0.00 0.00 0.00 3.49
2 3 5.168569 CAAAATTGATGCTCTGAACATGCT 58.831 37.500 0.00 0.00 0.00 3.79
3 4 4.927425 ACAAAATTGATGCTCTGAACATGC 59.073 37.500 0.00 0.00 0.00 4.06
4 5 7.416154 AAACAAAATTGATGCTCTGAACATG 57.584 32.000 0.00 0.00 0.00 3.21
5 6 8.441312 AAAAACAAAATTGATGCTCTGAACAT 57.559 26.923 0.00 0.00 0.00 2.71
6 7 7.011295 GGAAAAACAAAATTGATGCTCTGAACA 59.989 33.333 0.00 0.00 0.00 3.18
7 8 7.347448 GGAAAAACAAAATTGATGCTCTGAAC 58.653 34.615 0.00 0.00 0.00 3.18
8 9 6.482973 GGGAAAAACAAAATTGATGCTCTGAA 59.517 34.615 0.00 0.00 0.00 3.02
9 10 5.990996 GGGAAAAACAAAATTGATGCTCTGA 59.009 36.000 0.00 0.00 0.00 3.27
10 11 5.179929 GGGGAAAAACAAAATTGATGCTCTG 59.820 40.000 0.00 0.00 0.00 3.35
11 12 5.163216 TGGGGAAAAACAAAATTGATGCTCT 60.163 36.000 0.00 0.00 0.00 4.09
12 13 5.062528 TGGGGAAAAACAAAATTGATGCTC 58.937 37.500 0.00 0.00 0.00 4.26
13 14 5.046288 TGGGGAAAAACAAAATTGATGCT 57.954 34.783 0.00 0.00 0.00 3.79
14 15 5.472820 TCATGGGGAAAAACAAAATTGATGC 59.527 36.000 0.00 0.00 0.00 3.91
15 16 6.711645 AGTCATGGGGAAAAACAAAATTGATG 59.288 34.615 0.00 0.00 0.00 3.07
16 17 6.840527 AGTCATGGGGAAAAACAAAATTGAT 58.159 32.000 0.00 0.00 0.00 2.57
17 18 6.245890 AGTCATGGGGAAAAACAAAATTGA 57.754 33.333 0.00 0.00 0.00 2.57
18 19 6.940831 AAGTCATGGGGAAAAACAAAATTG 57.059 33.333 0.00 0.00 0.00 2.32
19 20 7.066887 GTGAAAGTCATGGGGAAAAACAAAATT 59.933 33.333 0.00 0.00 0.00 1.82
20 21 6.542005 GTGAAAGTCATGGGGAAAAACAAAAT 59.458 34.615 0.00 0.00 0.00 1.82
21 22 5.877564 GTGAAAGTCATGGGGAAAAACAAAA 59.122 36.000 0.00 0.00 0.00 2.44
22 23 5.046304 TGTGAAAGTCATGGGGAAAAACAAA 60.046 36.000 0.00 0.00 0.00 2.83
23 24 4.467795 TGTGAAAGTCATGGGGAAAAACAA 59.532 37.500 0.00 0.00 0.00 2.83
24 25 4.026744 TGTGAAAGTCATGGGGAAAAACA 58.973 39.130 0.00 0.00 0.00 2.83
25 26 4.142049 TGTGTGAAAGTCATGGGGAAAAAC 60.142 41.667 0.00 0.00 0.00 2.43
26 27 4.026744 TGTGTGAAAGTCATGGGGAAAAA 58.973 39.130 0.00 0.00 0.00 1.94
27 28 3.636679 TGTGTGAAAGTCATGGGGAAAA 58.363 40.909 0.00 0.00 0.00 2.29
28 29 3.304911 TGTGTGAAAGTCATGGGGAAA 57.695 42.857 0.00 0.00 0.00 3.13
29 30 3.156293 CATGTGTGAAAGTCATGGGGAA 58.844 45.455 0.00 0.00 36.36 3.97
30 31 2.108075 ACATGTGTGAAAGTCATGGGGA 59.892 45.455 0.00 0.00 41.91 4.81
31 32 2.517959 ACATGTGTGAAAGTCATGGGG 58.482 47.619 0.00 0.00 41.91 4.96
43 44 5.473796 TTCATCATCGAATCACATGTGTG 57.526 39.130 24.63 14.62 46.91 3.82
44 45 6.499234 TTTTCATCATCGAATCACATGTGT 57.501 33.333 24.63 7.23 0.00 3.72
45 46 7.980742 AATTTTCATCATCGAATCACATGTG 57.019 32.000 20.18 20.18 0.00 3.21
46 47 7.009815 GCAAATTTTCATCATCGAATCACATGT 59.990 33.333 0.00 0.00 0.00 3.21
47 48 7.009723 TGCAAATTTTCATCATCGAATCACATG 59.990 33.333 0.00 0.00 0.00 3.21
56 57 4.624024 AGTGCTTGCAAATTTTCATCATCG 59.376 37.500 0.00 0.00 0.00 3.84
57 58 5.636121 TGAGTGCTTGCAAATTTTCATCATC 59.364 36.000 0.00 0.00 0.00 2.92
68 69 5.177326 AGAAATGTTTTGAGTGCTTGCAAA 58.823 33.333 0.00 0.00 32.63 3.68
124 126 8.601476 GGATGAACGATAAAATACGAAAAGAGT 58.399 33.333 0.00 0.00 0.00 3.24
125 127 7.787935 CGGATGAACGATAAAATACGAAAAGAG 59.212 37.037 0.00 0.00 35.47 2.85
127 129 6.844279 CCGGATGAACGATAAAATACGAAAAG 59.156 38.462 0.00 0.00 35.47 2.27
128 130 6.707711 CCGGATGAACGATAAAATACGAAAA 58.292 36.000 0.00 0.00 35.47 2.29
132 134 3.120786 GGCCGGATGAACGATAAAATACG 60.121 47.826 5.05 0.00 35.47 3.06
133 135 3.187842 GGGCCGGATGAACGATAAAATAC 59.812 47.826 5.05 0.00 35.47 1.89
140 142 3.151710 TCGGGCCGGATGAACGAT 61.152 61.111 27.98 0.00 35.47 3.73
153 155 2.093447 ACATGGAGTTTCTTAGCTCGGG 60.093 50.000 0.00 0.00 32.83 5.14
155 157 3.190874 GGACATGGAGTTTCTTAGCTCG 58.809 50.000 0.00 0.00 32.83 5.03
156 158 3.119101 TCGGACATGGAGTTTCTTAGCTC 60.119 47.826 0.00 0.00 0.00 4.09
168 171 2.580815 CTGCTGCTCGGACATGGA 59.419 61.111 0.00 0.00 0.00 3.41
174 177 1.270305 GCAATATACCTGCTGCTCGGA 60.270 52.381 13.99 0.00 36.84 4.55
177 180 1.528586 CACGCAATATACCTGCTGCTC 59.471 52.381 0.00 0.00 37.67 4.26
202 208 2.281208 TTTTCTCCGGGTGGTGCG 60.281 61.111 0.00 0.00 36.30 5.34
206 212 2.561478 TCTTTCTTTTCTCCGGGTGG 57.439 50.000 0.00 0.00 0.00 4.61
216 222 9.670719 CGCTTTCTCTATTTCTTTCTTTCTTTT 57.329 29.630 0.00 0.00 0.00 2.27
232 238 1.303799 ACGCCTCGTCGCTTTCTCTA 61.304 55.000 0.00 0.00 33.69 2.43
416 452 4.717280 CAGGATATAATAGAGGGGTGGGTC 59.283 50.000 0.00 0.00 0.00 4.46
417 453 4.111424 ACAGGATATAATAGAGGGGTGGGT 59.889 45.833 0.00 0.00 0.00 4.51
478 514 2.225017 GGAGGAGGAGAGGGATAGACAG 60.225 59.091 0.00 0.00 0.00 3.51
480 516 1.076513 GGGAGGAGGAGAGGGATAGAC 59.923 61.905 0.00 0.00 0.00 2.59
482 518 0.411848 GGGGAGGAGGAGAGGGATAG 59.588 65.000 0.00 0.00 0.00 2.08
484 520 1.311371 AGGGGAGGAGGAGAGGGAT 60.311 63.158 0.00 0.00 0.00 3.85
485 521 2.015726 GAGGGGAGGAGGAGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
486 522 2.612251 GAGGGGAGGAGGAGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
487 523 2.612251 GGAGGGGAGGAGGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
488 524 2.612251 GGGAGGGGAGGAGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
489 525 3.036959 GGGGAGGGGAGGAGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
490 526 2.613576 GAAGGGGAGGGGAGGAGGAG 62.614 70.000 0.00 0.00 0.00 3.69
491 527 2.543637 AAGGGGAGGGGAGGAGGA 60.544 66.667 0.00 0.00 0.00 3.71
492 528 2.040359 GAAGGGGAGGGGAGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
493 529 2.040359 GGAAGGGGAGGGGAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
494 530 3.707189 GGGAAGGGGAGGGGAGGA 61.707 72.222 0.00 0.00 0.00 3.71
495 531 4.845307 GGGGAAGGGGAGGGGAGG 62.845 77.778 0.00 0.00 0.00 4.30
496 532 4.845307 GGGGGAAGGGGAGGGGAG 62.845 77.778 0.00 0.00 0.00 4.30
534 570 2.622962 GGGAAAAACCGAGGTGCCG 61.623 63.158 0.00 0.00 40.11 5.69
535 571 2.273179 GGGGAAAAACCGAGGTGCC 61.273 63.158 0.00 0.00 40.11 5.01
536 572 1.228459 AGGGGAAAAACCGAGGTGC 60.228 57.895 0.00 0.00 40.11 5.01
537 573 0.608308 GGAGGGGAAAAACCGAGGTG 60.608 60.000 0.00 0.00 40.11 4.00
538 574 1.765727 GGAGGGGAAAAACCGAGGT 59.234 57.895 0.00 0.00 40.11 3.85
539 575 1.001269 GGGAGGGGAAAAACCGAGG 60.001 63.158 0.00 0.00 40.11 4.63
540 576 4.736739 GGGAGGGGAAAAACCGAG 57.263 61.111 0.00 0.00 40.11 4.63
542 578 3.060000 GCGGGAGGGGAAAAACCG 61.060 66.667 0.00 0.00 46.78 4.44
543 579 1.977009 CAGCGGGAGGGGAAAAACC 60.977 63.158 0.00 0.00 38.08 3.27
544 580 1.977009 CCAGCGGGAGGGGAAAAAC 60.977 63.158 0.00 0.00 35.59 2.43
545 581 1.135068 TACCAGCGGGAGGGGAAAAA 61.135 55.000 10.86 0.00 38.05 1.94
546 582 0.917333 ATACCAGCGGGAGGGGAAAA 60.917 55.000 10.86 0.00 38.05 2.29
547 583 1.307517 ATACCAGCGGGAGGGGAAA 60.308 57.895 10.86 0.00 38.05 3.13
548 584 1.764854 GATACCAGCGGGAGGGGAA 60.765 63.158 10.86 0.00 38.05 3.97
549 585 2.122989 GATACCAGCGGGAGGGGA 60.123 66.667 10.86 0.00 38.05 4.81
550 586 3.616721 CGATACCAGCGGGAGGGG 61.617 72.222 10.86 0.00 38.05 4.79
551 587 2.520982 TCGATACCAGCGGGAGGG 60.521 66.667 10.86 0.00 38.05 4.30
552 588 2.728817 GTCGATACCAGCGGGAGG 59.271 66.667 10.86 0.00 38.05 4.30
553 589 2.331805 CGTCGATACCAGCGGGAG 59.668 66.667 10.86 0.00 38.05 4.30
554 590 3.896133 GCGTCGATACCAGCGGGA 61.896 66.667 10.86 0.00 38.05 5.14
555 591 4.201679 TGCGTCGATACCAGCGGG 62.202 66.667 0.00 0.00 41.29 6.13
556 592 2.655364 CTGCGTCGATACCAGCGG 60.655 66.667 0.00 0.00 0.00 5.52
557 593 1.655654 CTCTGCGTCGATACCAGCG 60.656 63.158 0.00 0.00 0.00 5.18
558 594 1.299468 CCTCTGCGTCGATACCAGC 60.299 63.158 0.00 0.00 0.00 4.85
559 595 1.360551 CCCTCTGCGTCGATACCAG 59.639 63.158 0.00 0.00 0.00 4.00
560 596 2.782222 GCCCTCTGCGTCGATACCA 61.782 63.158 0.00 0.00 0.00 3.25
561 597 2.027751 GCCCTCTGCGTCGATACC 59.972 66.667 0.00 0.00 0.00 2.73
562 598 2.027751 GGCCCTCTGCGTCGATAC 59.972 66.667 0.00 0.00 42.61 2.24
563 599 3.592814 CGGCCCTCTGCGTCGATA 61.593 66.667 0.00 0.00 42.61 2.92
936 972 2.654385 AGAGAGATAGAGAGGGGATGGG 59.346 54.545 0.00 0.00 0.00 4.00
937 973 3.622206 CGAGAGAGATAGAGAGGGGATGG 60.622 56.522 0.00 0.00 0.00 3.51
938 974 3.609853 CGAGAGAGATAGAGAGGGGATG 58.390 54.545 0.00 0.00 0.00 3.51
939 975 2.026262 GCGAGAGAGATAGAGAGGGGAT 60.026 54.545 0.00 0.00 0.00 3.85
940 976 1.349688 GCGAGAGAGATAGAGAGGGGA 59.650 57.143 0.00 0.00 0.00 4.81
949 1004 2.634217 CAGCGCGCGAGAGAGATA 59.366 61.111 37.18 0.00 0.00 1.98
1451 1529 7.121974 ACAAATCAACACATTAGTTCTCTCG 57.878 36.000 0.00 0.00 0.00 4.04
1489 1567 2.626840 GAAGACATTCCCTCTCTGCAC 58.373 52.381 0.00 0.00 0.00 4.57
1588 1669 1.261480 CCACCAGTAGCACAGAGACT 58.739 55.000 0.00 0.00 0.00 3.24
1615 1696 1.538512 CTGCAACACCACAGATTCCAG 59.461 52.381 0.00 0.00 35.90 3.86
1653 1734 1.212935 AGAACATCCACAGGTATGCCC 59.787 52.381 0.00 0.00 34.57 5.36
1659 1740 3.369471 CGGTAATGAGAACATCCACAGGT 60.369 47.826 0.00 0.00 35.50 4.00
1708 1789 2.179547 TGTGTGCAAGCAGACGTGG 61.180 57.895 16.08 0.00 42.26 4.94
1774 1855 9.283768 CACTGTATGGGATTGCTATAAATTACA 57.716 33.333 0.00 0.00 0.00 2.41
1798 1879 5.237344 CCTTTGCACTATCCACTAATAGCAC 59.763 44.000 0.00 0.00 33.33 4.40
1800 1881 4.214332 GCCTTTGCACTATCCACTAATAGC 59.786 45.833 0.00 0.00 37.47 2.97
1846 1927 1.997606 GCATGCAATTCAAGGCAGAAC 59.002 47.619 14.21 0.00 44.24 3.01
1890 1971 6.808321 ACCTGAGTTCCTAGCACATTATAA 57.192 37.500 0.00 0.00 0.00 0.98
1925 2006 3.811497 CCTGCCATATGCCATATATGACG 59.189 47.826 14.54 0.00 40.16 4.35
1931 2012 1.064166 GCCTCCTGCCATATGCCATAT 60.064 52.381 0.00 0.00 40.16 1.78
1932 2013 0.329261 GCCTCCTGCCATATGCCATA 59.671 55.000 0.00 0.00 40.16 2.74
1933 2014 1.076192 GCCTCCTGCCATATGCCAT 59.924 57.895 0.00 0.00 40.16 4.40
1934 2015 2.517414 GCCTCCTGCCATATGCCA 59.483 61.111 0.00 0.00 40.16 4.92
1935 2016 2.670934 CGCCTCCTGCCATATGCC 60.671 66.667 0.00 0.00 40.16 4.40
1936 2017 1.670406 CTCGCCTCCTGCCATATGC 60.670 63.158 0.00 0.00 41.77 3.14
1937 2018 0.320247 GACTCGCCTCCTGCCATATG 60.320 60.000 0.00 0.00 36.24 1.78
1977 2058 6.817396 CAGAAGATGCAAAATGACAAACATG 58.183 36.000 0.00 0.00 39.39 3.21
2047 2128 4.977963 CACAAGCAATCGAAAGTTGAACAT 59.022 37.500 0.00 0.00 0.00 2.71
2086 2167 5.692204 GCTAGACATAGGTTCTACGTACGTA 59.308 44.000 25.41 25.41 0.00 3.57
2087 2168 4.509600 GCTAGACATAGGTTCTACGTACGT 59.490 45.833 25.98 25.98 0.00 3.57
2088 2169 4.749099 AGCTAGACATAGGTTCTACGTACG 59.251 45.833 15.01 15.01 36.31 3.67
2089 2170 6.616774 AAGCTAGACATAGGTTCTACGTAC 57.383 41.667 0.00 0.00 44.46 3.67
2092 2173 6.380095 AGAAAGCTAGACATAGGTTCTACG 57.620 41.667 0.00 0.00 46.44 3.51
2192 2273 2.094675 CCAAAGGGCATACCACTTCAG 58.905 52.381 0.00 0.00 43.89 3.02
2210 2292 1.849977 TCAAGCATGCTATTTGGCCA 58.150 45.000 23.00 0.00 0.00 5.36
2232 2314 3.670625 GGCCACATACTGAAACTACACA 58.329 45.455 0.00 0.00 0.00 3.72
2233 2315 2.671396 CGGCCACATACTGAAACTACAC 59.329 50.000 2.24 0.00 0.00 2.90
2234 2316 2.300723 ACGGCCACATACTGAAACTACA 59.699 45.455 2.24 0.00 0.00 2.74
2235 2317 2.671396 CACGGCCACATACTGAAACTAC 59.329 50.000 2.24 0.00 0.00 2.73
2236 2318 2.563620 TCACGGCCACATACTGAAACTA 59.436 45.455 2.24 0.00 0.00 2.24
2237 2319 1.346395 TCACGGCCACATACTGAAACT 59.654 47.619 2.24 0.00 0.00 2.66
2238 2320 1.463444 GTCACGGCCACATACTGAAAC 59.537 52.381 2.24 0.00 0.00 2.78
2239 2321 1.346395 AGTCACGGCCACATACTGAAA 59.654 47.619 2.24 0.00 0.00 2.69
2240 2322 0.973632 AGTCACGGCCACATACTGAA 59.026 50.000 2.24 0.00 0.00 3.02
2241 2323 0.530744 GAGTCACGGCCACATACTGA 59.469 55.000 2.24 0.00 0.00 3.41
2242 2324 0.246360 TGAGTCACGGCCACATACTG 59.754 55.000 2.24 0.00 0.00 2.74
2243 2325 0.246635 GTGAGTCACGGCCACATACT 59.753 55.000 7.68 0.00 0.00 2.12
2244 2326 0.739813 GGTGAGTCACGGCCACATAC 60.740 60.000 16.89 0.00 34.83 2.39
2245 2327 0.902984 AGGTGAGTCACGGCCACATA 60.903 55.000 16.89 0.00 34.83 2.29
2246 2328 2.172483 GAGGTGAGTCACGGCCACAT 62.172 60.000 16.89 0.00 34.83 3.21
2247 2329 2.842462 AGGTGAGTCACGGCCACA 60.842 61.111 16.89 0.00 34.83 4.17
2248 2330 2.048127 GAGGTGAGTCACGGCCAC 60.048 66.667 16.89 2.88 34.83 5.01
2249 2331 1.913262 ATGAGGTGAGTCACGGCCA 60.913 57.895 16.89 13.81 34.83 5.36
2250 2332 1.448540 CATGAGGTGAGTCACGGCC 60.449 63.158 16.89 8.86 34.83 6.13
2251 2333 1.591703 TCATGAGGTGAGTCACGGC 59.408 57.895 16.89 11.46 34.83 5.68
2259 2341 0.978907 TGCAAGAGCTCATGAGGTGA 59.021 50.000 30.99 7.50 42.74 4.02
2260 2342 2.039818 ATGCAAGAGCTCATGAGGTG 57.960 50.000 30.99 17.80 42.74 4.00
2261 2343 2.753452 CAAATGCAAGAGCTCATGAGGT 59.247 45.455 26.78 26.78 42.74 3.85
2262 2344 3.014623 TCAAATGCAAGAGCTCATGAGG 58.985 45.455 22.54 8.12 42.74 3.86
2263 2345 4.696899 TTCAAATGCAAGAGCTCATGAG 57.303 40.909 22.54 18.84 42.74 2.90
2264 2346 5.456548 TTTTCAAATGCAAGAGCTCATGA 57.543 34.783 22.54 8.16 42.74 3.07
2265 2347 5.867174 TCATTTTCAAATGCAAGAGCTCATG 59.133 36.000 17.77 16.06 44.15 3.07
2266 2348 6.032956 TCATTTTCAAATGCAAGAGCTCAT 57.967 33.333 17.77 0.00 44.15 2.90
2267 2349 5.456548 TCATTTTCAAATGCAAGAGCTCA 57.543 34.783 17.77 0.00 44.15 4.26
2268 2350 6.963049 AATCATTTTCAAATGCAAGAGCTC 57.037 33.333 5.27 5.27 44.15 4.09
2269 2351 8.836268 TTAAATCATTTTCAAATGCAAGAGCT 57.164 26.923 7.31 0.00 44.15 4.09
2270 2352 7.691050 GCTTAAATCATTTTCAAATGCAAGAGC 59.309 33.333 7.31 8.67 44.15 4.09
2329 2411 9.504710 CTTCAGCAGAATATTCAGAAAAATGAG 57.495 33.333 17.56 2.71 32.31 2.90
2344 2426 2.490903 GGCACAACATCTTCAGCAGAAT 59.509 45.455 0.00 0.00 34.16 2.40
2424 2507 4.164988 CCCTGGTCCTGAGAGAATGTTTAT 59.835 45.833 0.00 0.00 0.00 1.40
2426 2509 2.307098 CCCTGGTCCTGAGAGAATGTTT 59.693 50.000 0.00 0.00 0.00 2.83
2427 2510 1.912043 CCCTGGTCCTGAGAGAATGTT 59.088 52.381 0.00 0.00 0.00 2.71
2428 2511 1.577736 CCCTGGTCCTGAGAGAATGT 58.422 55.000 0.00 0.00 0.00 2.71
2429 2512 0.835941 CCCCTGGTCCTGAGAGAATG 59.164 60.000 0.00 0.00 0.00 2.67
2430 2513 0.985490 GCCCCTGGTCCTGAGAGAAT 60.985 60.000 0.00 0.00 0.00 2.40
2432 2515 2.039624 GCCCCTGGTCCTGAGAGA 59.960 66.667 0.00 0.00 0.00 3.10
2433 2516 3.465403 CGCCCCTGGTCCTGAGAG 61.465 72.222 0.00 0.00 0.00 3.20
2440 2523 3.851128 GTAGCTCCGCCCCTGGTC 61.851 72.222 0.00 0.00 0.00 4.02
2443 2526 4.514577 CACGTAGCTCCGCCCCTG 62.515 72.222 0.00 0.00 0.00 4.45
2445 2528 4.208686 CTCACGTAGCTCCGCCCC 62.209 72.222 0.00 0.00 0.00 5.80
2446 2529 4.208686 CCTCACGTAGCTCCGCCC 62.209 72.222 0.00 0.00 0.00 6.13
2447 2530 4.208686 CCCTCACGTAGCTCCGCC 62.209 72.222 0.00 0.00 0.00 6.13
2448 2531 4.874977 GCCCTCACGTAGCTCCGC 62.875 72.222 0.00 0.00 0.00 5.54
2450 2533 2.656069 TTGGCCCTCACGTAGCTCC 61.656 63.158 0.00 0.00 0.00 4.70
2451 2534 1.448013 GTTGGCCCTCACGTAGCTC 60.448 63.158 0.00 0.00 0.00 4.09
2452 2535 2.214216 TGTTGGCCCTCACGTAGCT 61.214 57.895 0.00 0.00 0.00 3.32
2453 2536 2.033194 GTGTTGGCCCTCACGTAGC 61.033 63.158 0.00 0.00 0.00 3.58
2454 2537 4.278956 GTGTTGGCCCTCACGTAG 57.721 61.111 0.00 0.00 0.00 3.51
2458 2541 3.660111 GCACGTGTTGGCCCTCAC 61.660 66.667 18.38 14.84 0.00 3.51
2459 2542 3.825160 GAGCACGTGTTGGCCCTCA 62.825 63.158 18.38 0.00 0.00 3.86
2460 2543 3.050275 GAGCACGTGTTGGCCCTC 61.050 66.667 18.38 9.99 0.00 4.30
2461 2544 4.643387 GGAGCACGTGTTGGCCCT 62.643 66.667 18.38 3.91 0.00 5.19
2485 2568 2.275547 GAAAATCCTGCTGCGCTGGG 62.276 60.000 16.47 9.64 45.66 4.45
2486 2569 1.138247 GAAAATCCTGCTGCGCTGG 59.862 57.895 16.47 16.39 46.73 4.85
2487 2570 1.138247 GGAAAATCCTGCTGCGCTG 59.862 57.895 9.73 10.04 32.53 5.18
2488 2571 3.595819 GGAAAATCCTGCTGCGCT 58.404 55.556 9.73 0.00 32.53 5.92
2497 2580 7.923414 ACTAAGTGTACAATGAGGAAAATCC 57.077 36.000 12.24 0.00 36.58 3.01
2499 2582 9.965824 CAAAACTAAGTGTACAATGAGGAAAAT 57.034 29.630 12.24 0.00 0.00 1.82
2500 2583 8.410141 CCAAAACTAAGTGTACAATGAGGAAAA 58.590 33.333 12.24 0.00 0.00 2.29
2501 2584 7.013846 CCCAAAACTAAGTGTACAATGAGGAAA 59.986 37.037 12.24 0.00 0.00 3.13
2502 2585 6.488683 CCCAAAACTAAGTGTACAATGAGGAA 59.511 38.462 12.24 0.00 0.00 3.36
2503 2586 6.001460 CCCAAAACTAAGTGTACAATGAGGA 58.999 40.000 12.24 0.00 0.00 3.71
2504 2587 5.335661 GCCCAAAACTAAGTGTACAATGAGG 60.336 44.000 12.24 1.41 0.00 3.86
2505 2588 5.473504 AGCCCAAAACTAAGTGTACAATGAG 59.526 40.000 6.12 6.12 0.00 2.90
2506 2589 5.240623 CAGCCCAAAACTAAGTGTACAATGA 59.759 40.000 0.00 0.00 0.00 2.57
2507 2590 5.009610 ACAGCCCAAAACTAAGTGTACAATG 59.990 40.000 0.00 0.00 0.00 2.82
2508 2591 5.137551 ACAGCCCAAAACTAAGTGTACAAT 58.862 37.500 0.00 0.00 0.00 2.71
2509 2592 4.528920 ACAGCCCAAAACTAAGTGTACAA 58.471 39.130 0.00 0.00 0.00 2.41
2510 2593 4.131596 GACAGCCCAAAACTAAGTGTACA 58.868 43.478 0.00 0.00 0.00 2.90
2511 2594 3.501062 GGACAGCCCAAAACTAAGTGTAC 59.499 47.826 0.00 0.00 34.14 2.90
2512 2595 3.136809 TGGACAGCCCAAAACTAAGTGTA 59.863 43.478 0.00 0.00 43.29 2.90
2513 2596 2.092103 TGGACAGCCCAAAACTAAGTGT 60.092 45.455 0.00 0.00 43.29 3.55
2514 2597 2.582052 TGGACAGCCCAAAACTAAGTG 58.418 47.619 0.00 0.00 43.29 3.16
2524 2607 2.463589 GATGGTCGTTGGACAGCCCA 62.464 60.000 0.00 0.00 45.28 5.36
2525 2608 1.745489 GATGGTCGTTGGACAGCCC 60.745 63.158 0.00 0.00 45.28 5.19
2526 2609 0.605319 TTGATGGTCGTTGGACAGCC 60.605 55.000 0.00 0.00 45.28 4.85
2527 2610 1.197721 CTTTGATGGTCGTTGGACAGC 59.802 52.381 0.00 0.00 45.28 4.40
2528 2611 1.806542 CCTTTGATGGTCGTTGGACAG 59.193 52.381 0.00 0.00 45.28 3.51
2529 2612 1.544537 CCCTTTGATGGTCGTTGGACA 60.545 52.381 0.00 0.00 45.28 4.02
2530 2613 1.165270 CCCTTTGATGGTCGTTGGAC 58.835 55.000 0.00 0.00 42.66 4.02
2531 2614 0.768622 ACCCTTTGATGGTCGTTGGA 59.231 50.000 0.00 0.00 0.00 3.53
2532 2615 2.483014 TACCCTTTGATGGTCGTTGG 57.517 50.000 0.00 0.00 37.31 3.77
2533 2616 4.261801 AGATTACCCTTTGATGGTCGTTG 58.738 43.478 0.00 0.00 37.31 4.10
2534 2617 4.225267 AGAGATTACCCTTTGATGGTCGTT 59.775 41.667 0.00 0.00 37.31 3.85
2535 2618 3.775316 AGAGATTACCCTTTGATGGTCGT 59.225 43.478 0.00 0.00 37.31 4.34
2536 2619 4.408182 AGAGATTACCCTTTGATGGTCG 57.592 45.455 0.00 0.00 37.31 4.79
2537 2620 8.423906 TCTATAGAGATTACCCTTTGATGGTC 57.576 38.462 0.00 0.00 37.31 4.02
2538 2621 8.980832 ATCTATAGAGATTACCCTTTGATGGT 57.019 34.615 8.70 0.00 39.56 3.55
2552 2635 6.543430 CCAAGCTGGCTAATCTATAGAGAT 57.457 41.667 8.70 0.00 44.79 2.75
2553 2636 5.991933 CCAAGCTGGCTAATCTATAGAGA 57.008 43.478 8.70 0.00 35.71 3.10
2571 2654 4.994756 AAGGTTGGGCGGGCCAAG 62.995 66.667 33.36 0.00 37.98 3.61
2572 2655 4.548513 AAAGGTTGGGCGGGCCAA 62.549 61.111 29.82 29.82 37.98 4.52
2573 2656 4.548513 AAAAGGTTGGGCGGGCCA 62.549 61.111 20.63 20.63 37.98 5.36
2574 2657 4.002506 CAAAAGGTTGGGCGGGCC 62.003 66.667 14.65 14.65 0.00 5.80
2575 2658 4.680237 GCAAAAGGTTGGGCGGGC 62.680 66.667 0.00 0.00 35.10 6.13
2576 2659 4.002506 GGCAAAAGGTTGGGCGGG 62.003 66.667 0.00 0.00 35.10 6.13
2577 2660 2.917227 AGGCAAAAGGTTGGGCGG 60.917 61.111 0.00 0.00 35.10 6.13
2578 2661 1.743321 TTGAGGCAAAAGGTTGGGCG 61.743 55.000 0.00 0.00 35.10 6.13
2579 2662 0.033920 CTTGAGGCAAAAGGTTGGGC 59.966 55.000 0.00 0.00 35.10 5.36
2580 2663 0.033920 GCTTGAGGCAAAAGGTTGGG 59.966 55.000 2.00 0.00 41.35 4.12
2581 2664 1.000171 GAGCTTGAGGCAAAAGGTTGG 60.000 52.381 5.53 0.00 44.79 3.77
2582 2665 1.000171 GGAGCTTGAGGCAAAAGGTTG 60.000 52.381 5.53 0.00 44.79 3.77
2583 2666 1.332195 GGAGCTTGAGGCAAAAGGTT 58.668 50.000 5.53 0.00 44.79 3.50
2584 2667 0.890996 CGGAGCTTGAGGCAAAAGGT 60.891 55.000 3.89 3.89 44.79 3.50
2585 2668 1.878775 CGGAGCTTGAGGCAAAAGG 59.121 57.895 0.00 0.00 44.79 3.11
2599 2682 1.810532 GTCCTGAGTAGTGGCGGAG 59.189 63.158 0.00 0.00 0.00 4.63
2600 2683 2.044555 CGTCCTGAGTAGTGGCGGA 61.045 63.158 0.00 0.00 0.00 5.54
2601 2684 2.267681 GACGTCCTGAGTAGTGGCGG 62.268 65.000 3.51 0.00 0.00 6.13
2602 2685 1.136984 GACGTCCTGAGTAGTGGCG 59.863 63.158 3.51 0.00 0.00 5.69
2603 2686 0.889306 AAGACGTCCTGAGTAGTGGC 59.111 55.000 13.01 0.00 0.00 5.01
2604 2687 4.985538 AATAAGACGTCCTGAGTAGTGG 57.014 45.455 13.01 0.00 0.00 4.00
2605 2688 7.086230 ACTAAATAAGACGTCCTGAGTAGTG 57.914 40.000 13.01 0.00 0.00 2.74
2606 2689 8.046107 ACTACTAAATAAGACGTCCTGAGTAGT 58.954 37.037 23.53 23.53 41.21 2.73
2607 2690 8.436046 ACTACTAAATAAGACGTCCTGAGTAG 57.564 38.462 22.71 22.71 39.68 2.57
2608 2691 9.319143 GTACTACTAAATAAGACGTCCTGAGTA 57.681 37.037 13.01 10.34 0.00 2.59
2609 2692 7.826252 TGTACTACTAAATAAGACGTCCTGAGT 59.174 37.037 13.01 9.75 0.00 3.41
2638 2722 7.767198 AGCTAAATTAATTTGCTGCATGAATGT 59.233 29.630 24.47 9.37 34.90 2.71
2639 2723 8.061857 CAGCTAAATTAATTTGCTGCATGAATG 58.938 33.333 30.32 18.94 40.86 2.67
2711 2795 9.658799 ACCGAACATTCATAATTCCATATCTAG 57.341 33.333 0.00 0.00 0.00 2.43
2735 2819 6.749923 AGTAAGAAATGCAAGATCAGAACC 57.250 37.500 0.00 0.00 0.00 3.62
2784 2868 5.710513 AAGAGCATGTCATTGCAAGTAAA 57.289 34.783 4.94 0.00 45.23 2.01
2995 3079 5.278758 GCCATTACTGCACTTTTCAAACCTA 60.279 40.000 0.00 0.00 0.00 3.08
3690 3774 7.622893 ACATTTCTTAGATCCTTTCTTGCTC 57.377 36.000 0.00 0.00 35.79 4.26
3706 3790 8.912988 TCTATTGTCAAGGTCAAAACATTTCTT 58.087 29.630 0.00 0.00 0.00 2.52
3724 3808 3.301274 AGCAGTAGGAGGGTCTATTGTC 58.699 50.000 0.00 0.00 31.97 3.18
3880 3964 2.223782 ACGTCGCAAGGTGTAAACACTA 60.224 45.455 12.65 0.00 45.73 2.74
3979 4063 5.825532 TGAGGATCAATGTCCCAAATAACA 58.174 37.500 0.00 0.00 45.97 2.41
4258 4342 5.082425 GCCCCATCTTCATCAAATAGGATT 58.918 41.667 0.00 0.00 0.00 3.01
4330 4414 2.436417 GCCAACAGCATTAACTCCTCA 58.564 47.619 0.00 0.00 42.97 3.86
4824 4908 2.101582 AGGCCTGTAAAGCATCTACTCG 59.898 50.000 3.11 0.00 0.00 4.18
4957 5041 3.161866 GGCCCACTTCCTTTCATTACAA 58.838 45.455 0.00 0.00 0.00 2.41
5063 5147 7.036829 GCAAACTTAGTTGTGGGAAGTAAAAA 58.963 34.615 0.00 0.00 33.13 1.94
5069 5153 3.004734 CCAGCAAACTTAGTTGTGGGAAG 59.995 47.826 11.47 0.00 31.49 3.46
5070 5154 2.955660 CCAGCAAACTTAGTTGTGGGAA 59.044 45.455 11.47 0.00 31.49 3.97
5075 5159 2.223805 GCTTGCCAGCAAACTTAGTTGT 60.224 45.455 4.63 0.00 46.49 3.32
5088 5172 8.437742 CAAATCAGTTAAAATAAAGCTTGCCAG 58.562 33.333 0.00 0.00 0.00 4.85
5092 5178 9.260002 ACCACAAATCAGTTAAAATAAAGCTTG 57.740 29.630 0.00 0.00 0.00 4.01
5136 5223 5.163364 CCCAGAACTCTAGCATTACAGACAT 60.163 44.000 0.00 0.00 0.00 3.06
5137 5224 4.160439 CCCAGAACTCTAGCATTACAGACA 59.840 45.833 0.00 0.00 0.00 3.41
5142 5229 2.436173 AGCCCCAGAACTCTAGCATTAC 59.564 50.000 0.00 0.00 0.00 1.89
5143 5230 2.764269 AGCCCCAGAACTCTAGCATTA 58.236 47.619 0.00 0.00 0.00 1.90
5235 5322 4.623932 AACACACAGAATGGAGAGCTTA 57.376 40.909 0.00 0.00 43.62 3.09
5318 5405 5.730296 ACCATTCAGTAGATAATCCCTCG 57.270 43.478 0.00 0.00 0.00 4.63
5525 5615 3.490439 TCAACTTTCACTGCCTCATCA 57.510 42.857 0.00 0.00 0.00 3.07
5850 5940 4.506625 CCACAGGGAGGTGAATAAGAAACA 60.507 45.833 0.00 0.00 41.32 2.83
5884 5974 2.251642 GGCCACTTGACCACACGAC 61.252 63.158 0.00 0.00 0.00 4.34
5937 6028 4.875536 TCACTGGCACATACACAATATGAC 59.124 41.667 1.04 0.00 38.20 3.06
6251 6359 4.641645 TGGCAACCAGGTGAGGCG 62.642 66.667 12.56 0.00 0.00 5.52
6260 6368 2.784356 GCACAACTGCTGGCAACCA 61.784 57.895 0.00 0.00 40.63 3.67
6261 6369 2.028043 GCACAACTGCTGGCAACC 59.972 61.111 0.00 0.00 40.63 3.77
6326 6440 1.649390 AACAAACGGAAGCGTGTGCA 61.649 50.000 0.00 0.00 46.23 4.57
6333 6447 2.354821 ACTCAACAGAACAAACGGAAGC 59.645 45.455 0.00 0.00 0.00 3.86
6356 6470 0.686789 AGGCCAAAGCAAATCCAACC 59.313 50.000 5.01 0.00 42.56 3.77
6479 6597 0.893270 CGAATGGGGGTTGCAACTCA 60.893 55.000 29.75 22.85 0.00 3.41
6520 6658 9.209175 GTAGGAGTATGTGGCAAGAAAATATAG 57.791 37.037 0.00 0.00 0.00 1.31
6521 6659 8.154856 GGTAGGAGTATGTGGCAAGAAAATATA 58.845 37.037 0.00 0.00 0.00 0.86
6522 6660 6.998673 GGTAGGAGTATGTGGCAAGAAAATAT 59.001 38.462 0.00 0.00 0.00 1.28
6523 6661 6.354130 GGTAGGAGTATGTGGCAAGAAAATA 58.646 40.000 0.00 0.00 0.00 1.40
6524 6662 5.193679 GGTAGGAGTATGTGGCAAGAAAAT 58.806 41.667 0.00 0.00 0.00 1.82
6525 6663 4.566907 GGGTAGGAGTATGTGGCAAGAAAA 60.567 45.833 0.00 0.00 0.00 2.29
6526 6664 3.054655 GGGTAGGAGTATGTGGCAAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
6527 6665 2.504175 GGGTAGGAGTATGTGGCAAGAA 59.496 50.000 0.00 0.00 0.00 2.52
6528 6666 2.116238 GGGTAGGAGTATGTGGCAAGA 58.884 52.381 0.00 0.00 0.00 3.02
6529 6667 2.103263 GAGGGTAGGAGTATGTGGCAAG 59.897 54.545 0.00 0.00 0.00 4.01
6530 6668 2.116238 GAGGGTAGGAGTATGTGGCAA 58.884 52.381 0.00 0.00 0.00 4.52
6531 6669 1.007842 TGAGGGTAGGAGTATGTGGCA 59.992 52.381 0.00 0.00 0.00 4.92
6532 6670 1.413077 GTGAGGGTAGGAGTATGTGGC 59.587 57.143 0.00 0.00 0.00 5.01
6533 6671 1.681793 CGTGAGGGTAGGAGTATGTGG 59.318 57.143 0.00 0.00 0.00 4.17
6534 6672 2.651455 TCGTGAGGGTAGGAGTATGTG 58.349 52.381 0.00 0.00 0.00 3.21
6535 6673 3.377253 TTCGTGAGGGTAGGAGTATGT 57.623 47.619 0.00 0.00 0.00 2.29
6536 6674 4.341235 TCATTTCGTGAGGGTAGGAGTATG 59.659 45.833 0.00 0.00 31.80 2.39
6537 6675 4.543689 TCATTTCGTGAGGGTAGGAGTAT 58.456 43.478 0.00 0.00 31.80 2.12
6538 6676 3.972133 TCATTTCGTGAGGGTAGGAGTA 58.028 45.455 0.00 0.00 31.80 2.59
6597 6735 6.179906 ACCTTTTTCTGTCTGAAGAGATCA 57.820 37.500 0.00 0.00 35.89 2.92
6598 6736 7.227512 TCAAACCTTTTTCTGTCTGAAGAGATC 59.772 37.037 6.54 0.00 35.89 2.75
6599 6737 7.056635 TCAAACCTTTTTCTGTCTGAAGAGAT 58.943 34.615 6.54 0.00 35.89 2.75
6603 6741 5.745769 GCTTCAAACCTTTTTCTGTCTGAAG 59.254 40.000 0.00 0.00 35.89 3.02
6605 6743 4.949856 AGCTTCAAACCTTTTTCTGTCTGA 59.050 37.500 0.00 0.00 0.00 3.27
6606 6744 5.254339 AGCTTCAAACCTTTTTCTGTCTG 57.746 39.130 0.00 0.00 0.00 3.51
6607 6745 4.035675 CGAGCTTCAAACCTTTTTCTGTCT 59.964 41.667 0.00 0.00 0.00 3.41
6611 6749 2.952310 AGCGAGCTTCAAACCTTTTTCT 59.048 40.909 0.00 0.00 0.00 2.52
6614 6752 3.740115 TCTAGCGAGCTTCAAACCTTTT 58.260 40.909 1.86 0.00 0.00 2.27
6618 6756 3.067833 ACTTTCTAGCGAGCTTCAAACC 58.932 45.455 1.86 0.00 0.00 3.27
6626 6764 3.123790 GGTTCAGAAACTTTCTAGCGAGC 59.876 47.826 3.64 0.78 38.11 5.03
6651 6789 4.433615 TCGATGCAGATAAAACTGGACTC 58.566 43.478 0.00 0.00 40.64 3.36
6652 6790 4.160439 TCTCGATGCAGATAAAACTGGACT 59.840 41.667 0.00 0.00 40.64 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.