Multiple sequence alignment - TraesCS6D01G297800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G297800 chr6D 100.000 3129 0 0 1 3129 408695375 408692247 0.000000e+00 5779.0
1 TraesCS6D01G297800 chr6D 90.769 65 3 3 23 86 434292390 434292452 2.000000e-12 84.2
2 TraesCS6D01G297800 chr6B 95.831 1847 55 11 435 2275 613392903 613391073 0.000000e+00 2964.0
3 TraesCS6D01G297800 chr6B 93.750 400 23 2 2271 2669 613391046 613390648 1.610000e-167 599.0
4 TraesCS6D01G297800 chr6B 92.049 327 19 2 2676 2995 613390110 613389784 1.320000e-123 453.0
5 TraesCS6D01G297800 chr6B 83.051 177 21 6 91 265 237735289 237735120 5.400000e-33 152.0
6 TraesCS6D01G297800 chr6B 95.000 80 4 0 267 346 613393570 613393491 3.280000e-25 126.0
7 TraesCS6D01G297800 chr6A 92.962 2046 69 32 279 2275 554523024 554521005 0.000000e+00 2911.0
8 TraesCS6D01G297800 chr6A 92.231 399 30 1 2271 2669 554520978 554520581 5.860000e-157 564.0
9 TraesCS6D01G297800 chr4B 95.652 184 7 1 82 265 547410903 547410721 8.490000e-76 294.0
10 TraesCS6D01G297800 chr2D 94.565 184 10 0 82 265 59653465 59653648 5.110000e-73 285.0
11 TraesCS6D01G297800 chr2D 91.579 95 6 2 1 94 326789277 326789184 2.530000e-26 130.0
12 TraesCS6D01G297800 chr2D 90.909 77 4 3 10 85 518263458 518263384 1.990000e-17 100.0
13 TraesCS6D01G297800 chr7D 94.054 185 9 2 82 265 505347567 505347750 2.380000e-71 279.0
14 TraesCS6D01G297800 chr7D 91.139 79 6 1 8 86 13458032 13457955 4.270000e-19 106.0
15 TraesCS6D01G297800 chr1A 91.304 184 13 1 82 265 372888416 372888596 6.700000e-62 248.0
16 TraesCS6D01G297800 chr4A 86.047 129 16 2 138 265 678229583 678229710 1.510000e-28 137.0
17 TraesCS6D01G297800 chr1D 84.672 137 19 2 130 265 398576992 398577127 5.440000e-28 135.0
18 TraesCS6D01G297800 chr7A 94.118 85 4 1 1 85 624751348 624751431 9.110000e-26 128.0
19 TraesCS6D01G297800 chr7A 87.640 89 9 2 1 88 443700702 443700615 5.520000e-18 102.0
20 TraesCS6D01G297800 chr5B 83.704 135 18 4 134 265 555954729 555954596 1.180000e-24 124.0
21 TraesCS6D01G297800 chr2B 81.579 152 26 2 113 263 20337752 20337902 1.180000e-24 124.0
22 TraesCS6D01G297800 chr5A 91.667 84 4 3 1 82 592521882 592521964 2.550000e-21 113.0
23 TraesCS6D01G297800 chr5D 89.412 85 7 2 1 85 213185443 213185361 4.270000e-19 106.0
24 TraesCS6D01G297800 chr5D 88.000 75 4 5 13 85 291522266 291522195 2.000000e-12 84.2
25 TraesCS6D01G297800 chr3B 91.071 56 5 0 2614 2669 53559806 53559751 3.350000e-10 76.8
26 TraesCS6D01G297800 chr2A 89.655 58 6 0 2613 2670 716833946 716833889 1.200000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G297800 chr6D 408692247 408695375 3128 True 5779.0 5779 100.0000 1 3129 1 chr6D.!!$R1 3128
1 TraesCS6D01G297800 chr6B 613389784 613393570 3786 True 1035.5 2964 94.1575 267 2995 4 chr6B.!!$R2 2728
2 TraesCS6D01G297800 chr6A 554520581 554523024 2443 True 1737.5 2911 92.5965 279 2669 2 chr6A.!!$R1 2390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.107848 GGCCATTGTACCTAGCGTGT 60.108 55.000 0.0 0.0 0.00 4.49 F
212 213 1.137479 GGCCATTGTACCTAGCGTGTA 59.863 52.381 0.0 0.0 0.00 2.90 F
1977 2532 0.730834 CGAGTCGACAACTGCCTCTG 60.731 60.000 19.5 0.0 38.74 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1249 1798 0.887387 AGTACGCACGGCCAAACAAT 60.887 50.000 2.24 0.00 0.0 2.71 R
2050 2609 3.045601 AGATCGATCCCTTTTATGGCG 57.954 47.619 21.66 0.00 0.0 5.69 R
3001 4132 0.038890 GGAGGAAAGGCAAGGCTTCT 59.961 55.000 9.42 3.49 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.728471 ACATGTCATGTCTATATAGCCAGC 58.272 41.667 12.87 0.00 39.92 4.85
55 56 5.246883 ACATGTCATGTCTATATAGCCAGCA 59.753 40.000 12.87 2.10 39.92 4.41
56 57 5.139435 TGTCATGTCTATATAGCCAGCAC 57.861 43.478 4.75 2.03 0.00 4.40
57 58 4.169508 GTCATGTCTATATAGCCAGCACG 58.830 47.826 4.75 0.00 0.00 5.34
58 59 2.724977 TGTCTATATAGCCAGCACGC 57.275 50.000 4.75 0.00 0.00 5.34
59 60 2.239400 TGTCTATATAGCCAGCACGCT 58.761 47.619 4.75 2.89 43.09 5.07
60 61 2.029918 TGTCTATATAGCCAGCACGCTG 60.030 50.000 12.17 12.17 40.08 5.18
70 71 2.732412 CAGCACGCTGGCTATACTAT 57.268 50.000 11.29 0.00 43.68 2.12
71 72 3.032017 CAGCACGCTGGCTATACTATT 57.968 47.619 11.29 0.00 43.68 1.73
72 73 4.174411 CAGCACGCTGGCTATACTATTA 57.826 45.455 11.29 0.00 43.68 0.98
73 74 4.556233 CAGCACGCTGGCTATACTATTAA 58.444 43.478 11.29 0.00 43.68 1.40
74 75 4.386049 CAGCACGCTGGCTATACTATTAAC 59.614 45.833 11.29 0.00 43.68 2.01
75 76 3.678548 GCACGCTGGCTATACTATTAACC 59.321 47.826 0.00 0.00 0.00 2.85
76 77 4.798263 GCACGCTGGCTATACTATTAACCA 60.798 45.833 0.00 0.00 0.00 3.67
77 78 5.479306 CACGCTGGCTATACTATTAACCAT 58.521 41.667 0.00 0.00 0.00 3.55
78 79 5.348724 CACGCTGGCTATACTATTAACCATG 59.651 44.000 0.00 0.00 0.00 3.66
79 80 4.330074 CGCTGGCTATACTATTAACCATGC 59.670 45.833 0.00 0.00 0.00 4.06
80 81 5.491982 GCTGGCTATACTATTAACCATGCT 58.508 41.667 0.00 0.00 0.00 3.79
81 82 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
82 83 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
83 84 7.363880 GCTGGCTATACTATTAACCATGCTCTA 60.364 40.741 0.00 0.00 0.00 2.43
84 85 8.430573 TGGCTATACTATTAACCATGCTCTAA 57.569 34.615 0.00 0.00 0.00 2.10
85 86 8.311836 TGGCTATACTATTAACCATGCTCTAAC 58.688 37.037 0.00 0.00 0.00 2.34
86 87 7.764901 GGCTATACTATTAACCATGCTCTAACC 59.235 40.741 0.00 0.00 0.00 2.85
87 88 7.764901 GCTATACTATTAACCATGCTCTAACCC 59.235 40.741 0.00 0.00 0.00 4.11
88 89 5.968676 ACTATTAACCATGCTCTAACCCA 57.031 39.130 0.00 0.00 0.00 4.51
89 90 6.515512 ACTATTAACCATGCTCTAACCCAT 57.484 37.500 0.00 0.00 0.00 4.00
90 91 6.911308 ACTATTAACCATGCTCTAACCCATT 58.089 36.000 0.00 0.00 0.00 3.16
91 92 7.354312 ACTATTAACCATGCTCTAACCCATTT 58.646 34.615 0.00 0.00 0.00 2.32
92 93 8.499406 ACTATTAACCATGCTCTAACCCATTTA 58.501 33.333 0.00 0.00 0.00 1.40
93 94 7.582667 ATTAACCATGCTCTAACCCATTTAC 57.417 36.000 0.00 0.00 0.00 2.01
94 95 4.862641 ACCATGCTCTAACCCATTTACT 57.137 40.909 0.00 0.00 0.00 2.24
95 96 4.526970 ACCATGCTCTAACCCATTTACTG 58.473 43.478 0.00 0.00 0.00 2.74
96 97 4.227300 ACCATGCTCTAACCCATTTACTGA 59.773 41.667 0.00 0.00 0.00 3.41
97 98 5.192927 CCATGCTCTAACCCATTTACTGAA 58.807 41.667 0.00 0.00 0.00 3.02
98 99 5.297776 CCATGCTCTAACCCATTTACTGAAG 59.702 44.000 0.00 0.00 0.00 3.02
99 100 4.843728 TGCTCTAACCCATTTACTGAAGG 58.156 43.478 0.00 0.00 0.00 3.46
100 101 4.534500 TGCTCTAACCCATTTACTGAAGGA 59.466 41.667 0.00 0.00 0.00 3.36
101 102 5.013704 TGCTCTAACCCATTTACTGAAGGAA 59.986 40.000 0.00 0.00 0.00 3.36
102 103 5.944007 GCTCTAACCCATTTACTGAAGGAAA 59.056 40.000 0.00 0.00 0.00 3.13
103 104 6.433093 GCTCTAACCCATTTACTGAAGGAAAA 59.567 38.462 0.00 0.00 0.00 2.29
104 105 7.362142 GCTCTAACCCATTTACTGAAGGAAAAG 60.362 40.741 0.00 0.00 0.00 2.27
105 106 7.751646 TCTAACCCATTTACTGAAGGAAAAGA 58.248 34.615 0.00 0.00 0.00 2.52
106 107 8.221944 TCTAACCCATTTACTGAAGGAAAAGAA 58.778 33.333 0.00 0.00 0.00 2.52
107 108 7.669089 AACCCATTTACTGAAGGAAAAGAAA 57.331 32.000 0.00 0.00 0.00 2.52
108 109 7.290110 ACCCATTTACTGAAGGAAAAGAAAG 57.710 36.000 0.00 0.00 0.00 2.62
109 110 6.159293 CCCATTTACTGAAGGAAAAGAAAGC 58.841 40.000 0.00 0.00 0.00 3.51
110 111 6.159293 CCATTTACTGAAGGAAAAGAAAGCC 58.841 40.000 0.00 0.00 0.00 4.35
111 112 5.784578 TTTACTGAAGGAAAAGAAAGCCC 57.215 39.130 0.00 0.00 0.00 5.19
112 113 3.312736 ACTGAAGGAAAAGAAAGCCCA 57.687 42.857 0.00 0.00 0.00 5.36
113 114 3.849527 ACTGAAGGAAAAGAAAGCCCAT 58.150 40.909 0.00 0.00 0.00 4.00
114 115 4.226384 ACTGAAGGAAAAGAAAGCCCATT 58.774 39.130 0.00 0.00 0.00 3.16
115 116 5.393866 ACTGAAGGAAAAGAAAGCCCATTA 58.606 37.500 0.00 0.00 0.00 1.90
116 117 5.243954 ACTGAAGGAAAAGAAAGCCCATTAC 59.756 40.000 0.00 0.00 0.00 1.89
117 118 4.526650 TGAAGGAAAAGAAAGCCCATTACC 59.473 41.667 0.00 0.00 0.00 2.85
118 119 4.404185 AGGAAAAGAAAGCCCATTACCT 57.596 40.909 0.00 0.00 0.00 3.08
119 120 4.089361 AGGAAAAGAAAGCCCATTACCTG 58.911 43.478 0.00 0.00 0.00 4.00
120 121 4.086457 GGAAAAGAAAGCCCATTACCTGA 58.914 43.478 0.00 0.00 0.00 3.86
121 122 4.711846 GGAAAAGAAAGCCCATTACCTGAT 59.288 41.667 0.00 0.00 0.00 2.90
122 123 5.187772 GGAAAAGAAAGCCCATTACCTGATT 59.812 40.000 0.00 0.00 0.00 2.57
123 124 6.379988 GGAAAAGAAAGCCCATTACCTGATTA 59.620 38.462 0.00 0.00 0.00 1.75
124 125 6.775594 AAAGAAAGCCCATTACCTGATTAC 57.224 37.500 0.00 0.00 0.00 1.89
125 126 4.793201 AGAAAGCCCATTACCTGATTACC 58.207 43.478 0.00 0.00 0.00 2.85
126 127 3.595190 AAGCCCATTACCTGATTACCC 57.405 47.619 0.00 0.00 0.00 3.69
127 128 2.789219 AGCCCATTACCTGATTACCCT 58.211 47.619 0.00 0.00 0.00 4.34
128 129 3.949430 AGCCCATTACCTGATTACCCTA 58.051 45.455 0.00 0.00 0.00 3.53
129 130 3.651423 AGCCCATTACCTGATTACCCTAC 59.349 47.826 0.00 0.00 0.00 3.18
130 131 3.244805 GCCCATTACCTGATTACCCTACC 60.245 52.174 0.00 0.00 0.00 3.18
131 132 3.977999 CCCATTACCTGATTACCCTACCA 59.022 47.826 0.00 0.00 0.00 3.25
132 133 4.202430 CCCATTACCTGATTACCCTACCAC 60.202 50.000 0.00 0.00 0.00 4.16
133 134 4.410883 CCATTACCTGATTACCCTACCACA 59.589 45.833 0.00 0.00 0.00 4.17
134 135 5.104277 CCATTACCTGATTACCCTACCACAA 60.104 44.000 0.00 0.00 0.00 3.33
135 136 3.994931 ACCTGATTACCCTACCACAAC 57.005 47.619 0.00 0.00 0.00 3.32
136 137 2.574824 ACCTGATTACCCTACCACAACC 59.425 50.000 0.00 0.00 0.00 3.77
137 138 2.574369 CCTGATTACCCTACCACAACCA 59.426 50.000 0.00 0.00 0.00 3.67
138 139 3.370527 CCTGATTACCCTACCACAACCAG 60.371 52.174 0.00 0.00 0.00 4.00
139 140 2.026636 TGATTACCCTACCACAACCAGC 60.027 50.000 0.00 0.00 0.00 4.85
140 141 0.694196 TTACCCTACCACAACCAGCC 59.306 55.000 0.00 0.00 0.00 4.85
141 142 1.202769 TACCCTACCACAACCAGCCC 61.203 60.000 0.00 0.00 0.00 5.19
142 143 2.534396 CCCTACCACAACCAGCCCA 61.534 63.158 0.00 0.00 0.00 5.36
143 144 1.691219 CCTACCACAACCAGCCCAT 59.309 57.895 0.00 0.00 0.00 4.00
144 145 0.394352 CCTACCACAACCAGCCCATC 60.394 60.000 0.00 0.00 0.00 3.51
145 146 0.620556 CTACCACAACCAGCCCATCT 59.379 55.000 0.00 0.00 0.00 2.90
146 147 0.327924 TACCACAACCAGCCCATCTG 59.672 55.000 0.00 0.00 42.49 2.90
147 148 2.345760 CCACAACCAGCCCATCTGC 61.346 63.158 0.00 0.00 41.50 4.26
148 149 2.036256 ACAACCAGCCCATCTGCC 59.964 61.111 0.00 0.00 41.50 4.85
149 150 2.757099 CAACCAGCCCATCTGCCC 60.757 66.667 0.00 0.00 41.50 5.36
150 151 4.431131 AACCAGCCCATCTGCCCG 62.431 66.667 0.00 0.00 41.50 6.13
154 155 4.815973 AGCCCATCTGCCCGGGTA 62.816 66.667 24.63 18.56 45.07 3.69
155 156 3.804329 GCCCATCTGCCCGGGTAA 61.804 66.667 24.63 10.37 45.07 2.85
156 157 3.003230 CCCATCTGCCCGGGTAAA 58.997 61.111 24.63 3.97 37.70 2.01
157 158 1.152963 CCCATCTGCCCGGGTAAAG 60.153 63.158 24.63 17.46 37.70 1.85
158 159 1.823899 CCATCTGCCCGGGTAAAGC 60.824 63.158 24.63 7.64 0.00 3.51
159 160 1.077787 CATCTGCCCGGGTAAAGCA 60.078 57.895 24.63 12.55 34.79 3.91
160 161 1.077716 ATCTGCCCGGGTAAAGCAC 60.078 57.895 24.63 3.28 32.06 4.40
161 162 2.869503 ATCTGCCCGGGTAAAGCACG 62.870 60.000 24.63 4.39 45.07 5.34
174 175 2.809601 GCACGAGGCGTTGACGAT 60.810 61.111 7.85 0.00 43.02 3.73
175 176 2.380410 GCACGAGGCGTTGACGATT 61.380 57.895 7.85 0.00 43.02 3.34
176 177 1.897398 GCACGAGGCGTTGACGATTT 61.897 55.000 7.85 0.00 43.02 2.17
177 178 0.511221 CACGAGGCGTTGACGATTTT 59.489 50.000 7.85 0.00 43.02 1.82
178 179 1.070175 CACGAGGCGTTGACGATTTTT 60.070 47.619 7.85 0.00 43.02 1.94
179 180 1.193874 ACGAGGCGTTGACGATTTTTC 59.806 47.619 7.85 0.00 43.02 2.29
180 181 1.193650 CGAGGCGTTGACGATTTTTCA 59.806 47.619 7.85 0.00 43.02 2.69
181 182 2.159707 CGAGGCGTTGACGATTTTTCAT 60.160 45.455 7.85 0.00 43.02 2.57
182 183 3.061563 CGAGGCGTTGACGATTTTTCATA 59.938 43.478 7.85 0.00 43.02 2.15
183 184 4.578601 GAGGCGTTGACGATTTTTCATAG 58.421 43.478 7.85 0.00 43.02 2.23
184 185 4.000988 AGGCGTTGACGATTTTTCATAGT 58.999 39.130 7.85 0.00 43.02 2.12
185 186 5.172934 AGGCGTTGACGATTTTTCATAGTA 58.827 37.500 7.85 0.00 43.02 1.82
186 187 5.815740 AGGCGTTGACGATTTTTCATAGTAT 59.184 36.000 7.85 0.00 43.02 2.12
187 188 6.982141 AGGCGTTGACGATTTTTCATAGTATA 59.018 34.615 7.85 0.00 43.02 1.47
188 189 7.493320 AGGCGTTGACGATTTTTCATAGTATAA 59.507 33.333 7.85 0.00 43.02 0.98
189 190 7.581600 GGCGTTGACGATTTTTCATAGTATAAC 59.418 37.037 7.85 0.00 43.02 1.89
190 191 7.314944 GCGTTGACGATTTTTCATAGTATAACG 59.685 37.037 7.85 0.00 43.02 3.18
191 192 7.786118 CGTTGACGATTTTTCATAGTATAACGG 59.214 37.037 0.00 0.00 43.02 4.44
192 193 7.703298 TGACGATTTTTCATAGTATAACGGG 57.297 36.000 0.00 0.00 0.00 5.28
193 194 6.702723 TGACGATTTTTCATAGTATAACGGGG 59.297 38.462 0.00 0.00 0.00 5.73
194 195 5.467735 ACGATTTTTCATAGTATAACGGGGC 59.532 40.000 0.00 0.00 0.00 5.80
195 196 5.106830 CGATTTTTCATAGTATAACGGGGCC 60.107 44.000 0.00 0.00 0.00 5.80
196 197 4.774660 TTTTCATAGTATAACGGGGCCA 57.225 40.909 4.39 0.00 0.00 5.36
197 198 4.986054 TTTCATAGTATAACGGGGCCAT 57.014 40.909 4.39 0.00 0.00 4.40
198 199 4.986054 TTCATAGTATAACGGGGCCATT 57.014 40.909 4.39 0.91 0.00 3.16
199 200 4.280436 TCATAGTATAACGGGGCCATTG 57.720 45.455 4.39 0.00 0.00 2.82
200 201 3.649023 TCATAGTATAACGGGGCCATTGT 59.351 43.478 4.39 0.00 0.00 2.71
201 202 4.839550 TCATAGTATAACGGGGCCATTGTA 59.160 41.667 4.39 0.00 0.00 2.41
202 203 3.480505 AGTATAACGGGGCCATTGTAC 57.519 47.619 4.39 11.77 0.00 2.90
203 204 2.105306 AGTATAACGGGGCCATTGTACC 59.895 50.000 17.46 0.00 0.00 3.34
204 205 1.218844 ATAACGGGGCCATTGTACCT 58.781 50.000 4.39 0.00 0.00 3.08
205 206 1.876849 TAACGGGGCCATTGTACCTA 58.123 50.000 4.39 0.00 0.00 3.08
206 207 0.544697 AACGGGGCCATTGTACCTAG 59.455 55.000 4.39 0.00 0.00 3.02
207 208 1.227853 CGGGGCCATTGTACCTAGC 60.228 63.158 4.39 0.00 0.00 3.42
208 209 1.227853 GGGGCCATTGTACCTAGCG 60.228 63.158 4.39 0.00 0.00 4.26
209 210 1.525442 GGGCCATTGTACCTAGCGT 59.475 57.895 4.39 0.00 0.00 5.07
210 211 0.814010 GGGCCATTGTACCTAGCGTG 60.814 60.000 4.39 0.00 0.00 5.34
211 212 0.107848 GGCCATTGTACCTAGCGTGT 60.108 55.000 0.00 0.00 0.00 4.49
212 213 1.137479 GGCCATTGTACCTAGCGTGTA 59.863 52.381 0.00 0.00 0.00 2.90
213 214 2.470821 GCCATTGTACCTAGCGTGTAG 58.529 52.381 0.00 0.00 0.00 2.74
223 224 2.278271 GCGTGTAGCGAGAGAGCC 60.278 66.667 0.00 0.00 44.77 4.70
224 225 2.409651 CGTGTAGCGAGAGAGCCC 59.590 66.667 0.00 0.00 44.77 5.19
225 226 2.409651 GTGTAGCGAGAGAGCCCG 59.590 66.667 0.00 0.00 38.01 6.13
226 227 2.829003 TGTAGCGAGAGAGCCCGG 60.829 66.667 0.00 0.00 38.01 5.73
227 228 3.597728 GTAGCGAGAGAGCCCGGG 61.598 72.222 19.09 19.09 38.01 5.73
231 232 4.521062 CGAGAGAGCCCGGGCAAG 62.521 72.222 45.13 24.86 44.88 4.01
232 233 3.394836 GAGAGAGCCCGGGCAAGT 61.395 66.667 45.13 29.67 44.88 3.16
233 234 3.672295 GAGAGAGCCCGGGCAAGTG 62.672 68.421 45.13 8.75 44.88 3.16
275 276 2.866762 GCTCCGCCACTAAATACTTCAG 59.133 50.000 0.00 0.00 0.00 3.02
277 278 2.169769 TCCGCCACTAAATACTTCAGGG 59.830 50.000 0.00 0.00 0.00 4.45
346 348 2.449518 TGGGACACCAGGAAGGCA 60.450 61.111 0.00 0.00 43.37 4.75
348 350 2.352805 GGACACCAGGAAGGCAGG 59.647 66.667 0.00 0.00 43.14 4.85
349 351 2.224159 GGACACCAGGAAGGCAGGA 61.224 63.158 0.00 0.00 43.14 3.86
350 352 1.761174 GACACCAGGAAGGCAGGAA 59.239 57.895 0.00 0.00 43.14 3.36
352 354 1.672356 CACCAGGAAGGCAGGAACG 60.672 63.158 0.00 0.00 43.14 3.95
354 356 2.348998 CAGGAAGGCAGGAACGCT 59.651 61.111 0.00 0.00 0.00 5.07
357 359 2.032681 GAAGGCAGGAACGCTGGT 59.967 61.111 0.00 0.00 0.00 4.00
364 816 2.743928 GGAACGCTGGTGCTCAGG 60.744 66.667 9.12 3.36 43.54 3.86
381 833 1.882623 CAGGAGCCAAAGTGAGTTTCC 59.117 52.381 0.00 0.00 0.00 3.13
390 842 5.163884 GCCAAAGTGAGTTTCCGTAATCTAC 60.164 44.000 0.00 0.00 0.00 2.59
437 963 2.358756 GAATGCAGAAGAGCGAGCGC 62.359 60.000 6.78 6.78 42.33 5.92
578 1107 2.358247 CTGGAAACCCGACCCACG 60.358 66.667 0.00 0.00 42.18 4.94
909 1439 5.280945 CACTTGCCATTAACAAATATCGGG 58.719 41.667 0.00 0.00 0.00 5.14
966 1497 1.726853 CAAGTCAACCGTCCATCTCC 58.273 55.000 0.00 0.00 0.00 3.71
1227 1776 6.756542 GGAAAACTTCTGCATGTTGTTTTAGT 59.243 34.615 15.09 0.00 39.79 2.24
1268 1817 0.887387 ATTGTTTGGCCGTGCGTACT 60.887 50.000 1.24 0.00 0.00 2.73
1269 1818 1.500512 TTGTTTGGCCGTGCGTACTC 61.501 55.000 1.24 0.00 0.00 2.59
1270 1819 1.666872 GTTTGGCCGTGCGTACTCT 60.667 57.895 1.24 0.00 0.00 3.24
1271 1820 1.373748 TTTGGCCGTGCGTACTCTC 60.374 57.895 1.24 0.00 0.00 3.20
1272 1821 1.812686 TTTGGCCGTGCGTACTCTCT 61.813 55.000 1.24 0.00 0.00 3.10
1273 1822 2.102553 GGCCGTGCGTACTCTCTC 59.897 66.667 1.24 0.00 0.00 3.20
1274 1823 2.408241 GGCCGTGCGTACTCTCTCT 61.408 63.158 1.24 0.00 0.00 3.10
1325 1874 2.512515 GTCCACCGATCAGCAGGC 60.513 66.667 0.00 0.00 0.00 4.85
1387 1936 4.115199 GGTCGCCCCCATGAGCTT 62.115 66.667 0.00 0.00 0.00 3.74
1715 2264 4.382541 TCCGCAGAGGAGCCTCCA 62.383 66.667 14.46 0.00 45.98 3.86
1951 2500 0.987294 CTGGTCCTGGACACCTTCAT 59.013 55.000 26.94 0.00 34.66 2.57
1974 2529 3.759544 TCGAGTCGACAACTGCCT 58.240 55.556 19.50 0.00 38.74 4.75
1975 2530 1.579932 TCGAGTCGACAACTGCCTC 59.420 57.895 19.50 3.39 38.74 4.70
1976 2531 0.889638 TCGAGTCGACAACTGCCTCT 60.890 55.000 19.50 0.00 38.74 3.69
1977 2532 0.730834 CGAGTCGACAACTGCCTCTG 60.731 60.000 19.50 0.00 38.74 3.35
1978 2533 1.005630 AGTCGACAACTGCCTCTGC 60.006 57.895 19.50 0.00 36.65 4.26
2050 2609 2.159382 TCTTTGGATGGAAGAAACGCC 58.841 47.619 0.00 0.00 30.60 5.68
2091 2650 9.821662 CGATCTAGTTTTAATTTTCGTTCCTTT 57.178 29.630 0.00 0.00 0.00 3.11
2123 2684 0.610687 CTCCTGGGAGTTGTGAGGTC 59.389 60.000 8.39 0.00 37.47 3.85
2136 2697 3.750371 TGTGAGGTCAATGTAAACCTGG 58.250 45.455 0.00 0.00 45.93 4.45
2466 3058 1.135053 GTCTCAGAAACCCTAGACGGC 60.135 57.143 0.00 0.00 30.03 5.68
2490 3082 0.341961 ATAGCTACACCCACTCCCCA 59.658 55.000 0.00 0.00 0.00 4.96
2493 3085 1.537889 CTACACCCACTCCCCACCA 60.538 63.158 0.00 0.00 0.00 4.17
2499 3091 3.569210 CACTCCCCACCAGCCACA 61.569 66.667 0.00 0.00 0.00 4.17
2581 3174 8.982091 ACATTGTAGCTCTGTAGTTAGATCTA 57.018 34.615 0.00 0.00 0.00 1.98
2602 3195 7.563724 TCTATTAGGGTTACAGTTTGGTTCT 57.436 36.000 0.00 0.00 0.00 3.01
2607 3200 4.351111 AGGGTTACAGTTTGGTTCTCTGAT 59.649 41.667 0.00 0.00 33.93 2.90
2611 3204 2.107204 ACAGTTTGGTTCTCTGATGGCT 59.893 45.455 0.00 0.00 33.93 4.75
2639 3232 6.817140 GGTAGTCCGAATAGTGACTTTGAATT 59.183 38.462 0.00 0.00 41.80 2.17
2652 3245 3.766051 ACTTTGAATTGGATTGGAGCTCC 59.234 43.478 26.78 26.78 0.00 4.70
2669 3262 2.037772 GCTCCGATGGTAGGATCACAAT 59.962 50.000 0.00 0.00 37.13 2.71
2670 3263 3.258372 GCTCCGATGGTAGGATCACAATA 59.742 47.826 0.00 0.00 37.13 1.90
2671 3264 4.619394 GCTCCGATGGTAGGATCACAATAG 60.619 50.000 0.00 0.00 37.13 1.73
2672 3265 3.258372 TCCGATGGTAGGATCACAATAGC 59.742 47.826 0.00 0.00 31.86 2.97
2673 3266 3.245797 CGATGGTAGGATCACAATAGCG 58.754 50.000 0.00 0.00 0.00 4.26
2674 3267 2.526304 TGGTAGGATCACAATAGCGC 57.474 50.000 0.00 0.00 0.00 5.92
2688 3812 4.449068 ACAATAGCGCCATCTCTTTTATCG 59.551 41.667 2.29 0.00 0.00 2.92
2740 3864 5.188434 TGCTTCATCTCAATGGGACTAAAG 58.812 41.667 0.00 0.00 33.42 1.85
2751 3875 7.999679 TCAATGGGACTAAAGCTTTTCATATG 58.000 34.615 18.47 7.68 0.00 1.78
2773 3897 2.710377 TCAATGCATTCGTTAGCACCT 58.290 42.857 9.53 0.00 44.49 4.00
2774 3898 3.867857 TCAATGCATTCGTTAGCACCTA 58.132 40.909 9.53 0.00 44.49 3.08
2779 3904 3.871006 TGCATTCGTTAGCACCTAATCAG 59.129 43.478 0.00 0.00 35.51 2.90
2825 3950 7.168302 CCACTTAGCGTATAGATGTTCTTTCAG 59.832 40.741 0.00 0.00 0.00 3.02
2830 3955 5.050702 GCGTATAGATGTTCTTTCAGGAAGC 60.051 44.000 0.00 0.00 35.24 3.86
2833 3958 7.921214 CGTATAGATGTTCTTTCAGGAAGCTTA 59.079 37.037 0.00 0.00 35.24 3.09
2843 3968 4.744795 TCAGGAAGCTTACCAATCTCTC 57.255 45.455 4.63 0.00 0.00 3.20
2849 3974 2.432146 AGCTTACCAATCTCTCGCATGA 59.568 45.455 0.00 0.00 0.00 3.07
2854 3979 1.598132 CCAATCTCTCGCATGAGCTTG 59.402 52.381 0.00 10.66 42.26 4.01
2856 3981 2.222007 ATCTCTCGCATGAGCTTGTC 57.778 50.000 0.00 0.00 42.26 3.18
2929 4060 3.306225 GGCATCCTTCTTCACATTTGCAA 60.306 43.478 0.00 0.00 0.00 4.08
2936 4067 6.209986 TCCTTCTTCACATTTGCAATCTCAAT 59.790 34.615 0.00 0.00 0.00 2.57
2980 4111 4.460382 CAGAGATGGCCTTTTGAGCTTTAA 59.540 41.667 3.32 0.00 0.00 1.52
2995 4126 3.057033 AGCTTTAACCATGAGCTTGCTTG 60.057 43.478 0.18 0.00 43.84 4.01
2996 4127 3.057315 GCTTTAACCATGAGCTTGCTTGA 60.057 43.478 0.00 0.00 33.72 3.02
2997 4128 4.479619 CTTTAACCATGAGCTTGCTTGAC 58.520 43.478 0.00 0.00 0.00 3.18
2998 4129 1.251251 AACCATGAGCTTGCTTGACC 58.749 50.000 0.00 0.00 0.00 4.02
2999 4130 0.111061 ACCATGAGCTTGCTTGACCA 59.889 50.000 0.00 0.00 0.00 4.02
3000 4131 1.250328 CCATGAGCTTGCTTGACCAA 58.750 50.000 0.00 0.00 0.00 3.67
3001 4132 1.614903 CCATGAGCTTGCTTGACCAAA 59.385 47.619 0.00 0.00 0.00 3.28
3002 4133 2.352421 CCATGAGCTTGCTTGACCAAAG 60.352 50.000 0.00 0.00 39.07 2.77
3003 4134 2.346766 TGAGCTTGCTTGACCAAAGA 57.653 45.000 0.00 0.00 38.24 2.52
3004 4135 2.653726 TGAGCTTGCTTGACCAAAGAA 58.346 42.857 0.00 0.00 38.24 2.52
3005 4136 2.620115 TGAGCTTGCTTGACCAAAGAAG 59.380 45.455 0.00 0.00 38.24 2.85
3006 4137 1.339291 AGCTTGCTTGACCAAAGAAGC 59.661 47.619 13.40 13.40 42.80 3.86
3007 4138 1.603931 GCTTGCTTGACCAAAGAAGCC 60.604 52.381 11.46 0.00 43.34 4.35
3008 4139 1.959282 CTTGCTTGACCAAAGAAGCCT 59.041 47.619 0.00 0.00 43.34 4.58
3009 4140 2.071778 TGCTTGACCAAAGAAGCCTT 57.928 45.000 0.00 0.00 43.34 4.35
3010 4141 1.682854 TGCTTGACCAAAGAAGCCTTG 59.317 47.619 0.00 0.00 43.34 3.61
3011 4142 1.603931 GCTTGACCAAAGAAGCCTTGC 60.604 52.381 0.00 0.00 38.96 4.01
3012 4143 1.000171 CTTGACCAAAGAAGCCTTGCC 60.000 52.381 0.00 0.00 38.24 4.52
3013 4144 0.185901 TGACCAAAGAAGCCTTGCCT 59.814 50.000 0.00 0.00 31.91 4.75
3014 4145 1.332195 GACCAAAGAAGCCTTGCCTT 58.668 50.000 0.00 0.00 31.91 4.35
3015 4146 1.688735 GACCAAAGAAGCCTTGCCTTT 59.311 47.619 0.00 0.00 31.91 3.11
3016 4147 1.688735 ACCAAAGAAGCCTTGCCTTTC 59.311 47.619 0.00 0.00 31.91 2.62
3017 4148 1.001293 CCAAAGAAGCCTTGCCTTTCC 59.999 52.381 0.00 0.00 31.91 3.13
3018 4149 1.966354 CAAAGAAGCCTTGCCTTTCCT 59.034 47.619 0.00 0.00 31.91 3.36
3019 4150 1.916506 AAGAAGCCTTGCCTTTCCTC 58.083 50.000 0.00 0.00 0.00 3.71
3020 4151 0.038890 AGAAGCCTTGCCTTTCCTCC 59.961 55.000 0.00 0.00 0.00 4.30
3021 4152 0.038890 GAAGCCTTGCCTTTCCTCCT 59.961 55.000 0.00 0.00 0.00 3.69
3022 4153 1.282157 GAAGCCTTGCCTTTCCTCCTA 59.718 52.381 0.00 0.00 0.00 2.94
3023 4154 1.601248 AGCCTTGCCTTTCCTCCTAT 58.399 50.000 0.00 0.00 0.00 2.57
3024 4155 2.776665 AGCCTTGCCTTTCCTCCTATA 58.223 47.619 0.00 0.00 0.00 1.31
3025 4156 3.331120 AGCCTTGCCTTTCCTCCTATAT 58.669 45.455 0.00 0.00 0.00 0.86
3026 4157 3.073650 AGCCTTGCCTTTCCTCCTATATG 59.926 47.826 0.00 0.00 0.00 1.78
3027 4158 3.416156 CCTTGCCTTTCCTCCTATATGC 58.584 50.000 0.00 0.00 0.00 3.14
3028 4159 2.839486 TGCCTTTCCTCCTATATGCG 57.161 50.000 0.00 0.00 0.00 4.73
3029 4160 1.270839 TGCCTTTCCTCCTATATGCGC 60.271 52.381 0.00 0.00 0.00 6.09
3030 4161 1.002544 GCCTTTCCTCCTATATGCGCT 59.997 52.381 9.73 0.00 0.00 5.92
3031 4162 2.693069 CCTTTCCTCCTATATGCGCTG 58.307 52.381 9.73 0.00 0.00 5.18
3032 4163 2.037772 CCTTTCCTCCTATATGCGCTGT 59.962 50.000 9.73 0.00 0.00 4.40
3033 4164 3.495100 CCTTTCCTCCTATATGCGCTGTT 60.495 47.826 9.73 0.00 0.00 3.16
3034 4165 4.262463 CCTTTCCTCCTATATGCGCTGTTA 60.262 45.833 9.73 0.00 0.00 2.41
3035 4166 4.521130 TTCCTCCTATATGCGCTGTTAG 57.479 45.455 9.73 6.53 0.00 2.34
3036 4167 2.826128 TCCTCCTATATGCGCTGTTAGG 59.174 50.000 18.30 18.30 33.86 2.69
3037 4168 2.826128 CCTCCTATATGCGCTGTTAGGA 59.174 50.000 22.66 22.66 38.27 2.94
3038 4169 3.258372 CCTCCTATATGCGCTGTTAGGAA 59.742 47.826 23.57 13.49 39.67 3.36
3039 4170 4.238514 CTCCTATATGCGCTGTTAGGAAC 58.761 47.826 23.57 0.00 39.67 3.62
3040 4171 3.006537 TCCTATATGCGCTGTTAGGAACC 59.993 47.826 22.22 0.00 37.79 3.62
3041 4172 3.006967 CCTATATGCGCTGTTAGGAACCT 59.993 47.826 19.14 0.00 34.36 3.50
3042 4173 3.560636 ATATGCGCTGTTAGGAACCTT 57.439 42.857 9.73 0.00 0.00 3.50
3043 4174 1.739067 ATGCGCTGTTAGGAACCTTC 58.261 50.000 9.73 0.00 0.00 3.46
3044 4175 0.685097 TGCGCTGTTAGGAACCTTCT 59.315 50.000 9.73 0.00 0.00 2.85
3045 4176 1.337823 TGCGCTGTTAGGAACCTTCTC 60.338 52.381 9.73 0.00 0.00 2.87
3046 4177 2.007547 GCGCTGTTAGGAACCTTCTCC 61.008 57.143 0.00 0.00 35.51 3.71
3048 4179 2.028020 CGCTGTTAGGAACCTTCTCCTT 60.028 50.000 0.00 0.00 43.76 3.36
3049 4180 3.194968 CGCTGTTAGGAACCTTCTCCTTA 59.805 47.826 0.00 0.00 43.76 2.69
3050 4181 4.141914 CGCTGTTAGGAACCTTCTCCTTAT 60.142 45.833 0.00 0.00 43.76 1.73
3051 4182 5.361427 GCTGTTAGGAACCTTCTCCTTATC 58.639 45.833 0.00 0.00 43.76 1.75
3052 4183 5.104900 GCTGTTAGGAACCTTCTCCTTATCA 60.105 44.000 0.00 0.00 43.76 2.15
3053 4184 6.576442 GCTGTTAGGAACCTTCTCCTTATCAA 60.576 42.308 0.00 0.00 43.76 2.57
3054 4185 7.324388 TGTTAGGAACCTTCTCCTTATCAAA 57.676 36.000 0.00 0.00 43.76 2.69
3055 4186 7.751646 TGTTAGGAACCTTCTCCTTATCAAAA 58.248 34.615 0.00 0.00 43.76 2.44
3056 4187 8.390921 TGTTAGGAACCTTCTCCTTATCAAAAT 58.609 33.333 0.00 0.00 43.76 1.82
3057 4188 9.244292 GTTAGGAACCTTCTCCTTATCAAAATT 57.756 33.333 0.00 0.00 43.76 1.82
3060 4191 9.634021 AGGAACCTTCTCCTTATCAAAATTATC 57.366 33.333 0.00 0.00 43.76 1.75
3061 4192 9.408648 GGAACCTTCTCCTTATCAAAATTATCA 57.591 33.333 0.00 0.00 32.21 2.15
3064 4195 8.907885 ACCTTCTCCTTATCAAAATTATCAAGC 58.092 33.333 0.00 0.00 0.00 4.01
3065 4196 8.355913 CCTTCTCCTTATCAAAATTATCAAGCC 58.644 37.037 0.00 0.00 0.00 4.35
3066 4197 9.129532 CTTCTCCTTATCAAAATTATCAAGCCT 57.870 33.333 0.00 0.00 0.00 4.58
3074 4205 7.807977 TCAAAATTATCAAGCCTATGAGTCC 57.192 36.000 0.00 0.00 31.76 3.85
3075 4206 7.345691 TCAAAATTATCAAGCCTATGAGTCCA 58.654 34.615 0.00 0.00 31.76 4.02
3076 4207 8.000709 TCAAAATTATCAAGCCTATGAGTCCAT 58.999 33.333 0.00 0.00 36.81 3.41
3077 4208 8.636213 CAAAATTATCAAGCCTATGAGTCCATT 58.364 33.333 0.00 0.00 34.31 3.16
3078 4209 8.773033 AAATTATCAAGCCTATGAGTCCATTT 57.227 30.769 0.00 0.00 34.31 2.32
3079 4210 8.773033 AATTATCAAGCCTATGAGTCCATTTT 57.227 30.769 0.00 0.00 34.31 1.82
3080 4211 8.773033 ATTATCAAGCCTATGAGTCCATTTTT 57.227 30.769 0.00 0.00 34.31 1.94
3081 4212 9.866655 ATTATCAAGCCTATGAGTCCATTTTTA 57.133 29.630 0.00 0.00 34.31 1.52
3082 4213 7.814264 ATCAAGCCTATGAGTCCATTTTTAG 57.186 36.000 0.00 0.00 34.31 1.85
3083 4214 6.721318 TCAAGCCTATGAGTCCATTTTTAGT 58.279 36.000 0.00 0.00 34.31 2.24
3084 4215 6.599244 TCAAGCCTATGAGTCCATTTTTAGTG 59.401 38.462 0.00 0.00 34.31 2.74
3085 4216 5.440610 AGCCTATGAGTCCATTTTTAGTGG 58.559 41.667 0.00 0.00 38.11 4.00
3086 4217 4.036852 GCCTATGAGTCCATTTTTAGTGGC 59.963 45.833 0.00 0.00 36.66 5.01
3087 4218 4.273480 CCTATGAGTCCATTTTTAGTGGCG 59.727 45.833 0.00 0.00 36.66 5.69
3088 4219 2.432444 TGAGTCCATTTTTAGTGGCGG 58.568 47.619 0.00 0.00 36.66 6.13
3089 4220 2.039216 TGAGTCCATTTTTAGTGGCGGA 59.961 45.455 0.00 0.00 36.66 5.54
3090 4221 3.279434 GAGTCCATTTTTAGTGGCGGAT 58.721 45.455 0.00 0.00 36.66 4.18
3091 4222 3.016736 AGTCCATTTTTAGTGGCGGATG 58.983 45.455 0.00 0.00 36.66 3.51
3092 4223 2.752903 GTCCATTTTTAGTGGCGGATGT 59.247 45.455 0.00 0.00 36.66 3.06
3093 4224 3.013921 TCCATTTTTAGTGGCGGATGTC 58.986 45.455 0.00 0.00 36.66 3.06
3094 4225 2.099098 CCATTTTTAGTGGCGGATGTCC 59.901 50.000 0.00 0.00 0.00 4.02
3095 4226 2.871096 TTTTTAGTGGCGGATGTCCT 57.129 45.000 0.00 0.00 0.00 3.85
3096 4227 2.871096 TTTTAGTGGCGGATGTCCTT 57.129 45.000 0.00 0.00 0.00 3.36
3097 4228 2.107950 TTTAGTGGCGGATGTCCTTG 57.892 50.000 0.00 0.00 0.00 3.61
3098 4229 0.981183 TTAGTGGCGGATGTCCTTGT 59.019 50.000 0.00 0.00 0.00 3.16
3099 4230 1.855295 TAGTGGCGGATGTCCTTGTA 58.145 50.000 0.00 0.00 0.00 2.41
3100 4231 0.537188 AGTGGCGGATGTCCTTGTAG 59.463 55.000 0.00 0.00 0.00 2.74
3101 4232 0.535335 GTGGCGGATGTCCTTGTAGA 59.465 55.000 0.00 0.00 0.00 2.59
3102 4233 0.824109 TGGCGGATGTCCTTGTAGAG 59.176 55.000 0.00 0.00 0.00 2.43
3103 4234 1.112113 GGCGGATGTCCTTGTAGAGA 58.888 55.000 0.00 0.00 0.00 3.10
3104 4235 1.067821 GGCGGATGTCCTTGTAGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
3105 4236 1.067821 GCGGATGTCCTTGTAGAGAGG 59.932 57.143 0.00 0.00 35.53 3.69
3106 4237 2.656002 CGGATGTCCTTGTAGAGAGGA 58.344 52.381 0.00 0.00 40.93 3.71
3107 4238 3.226777 CGGATGTCCTTGTAGAGAGGAT 58.773 50.000 0.00 0.00 44.65 3.24
3108 4239 3.639094 CGGATGTCCTTGTAGAGAGGATT 59.361 47.826 0.00 0.00 44.65 3.01
3109 4240 4.100189 CGGATGTCCTTGTAGAGAGGATTT 59.900 45.833 0.00 0.00 44.65 2.17
3110 4241 5.363939 GGATGTCCTTGTAGAGAGGATTTG 58.636 45.833 0.00 0.00 44.65 2.32
3111 4242 5.129485 GGATGTCCTTGTAGAGAGGATTTGA 59.871 44.000 0.00 0.00 44.65 2.69
3112 4243 5.407407 TGTCCTTGTAGAGAGGATTTGAC 57.593 43.478 0.00 0.00 44.65 3.18
3113 4244 4.838423 TGTCCTTGTAGAGAGGATTTGACA 59.162 41.667 0.00 0.00 44.65 3.58
3114 4245 5.172205 GTCCTTGTAGAGAGGATTTGACAC 58.828 45.833 0.00 0.00 44.65 3.67
3115 4246 5.046950 GTCCTTGTAGAGAGGATTTGACACT 60.047 44.000 0.00 0.00 44.65 3.55
3116 4247 5.544176 TCCTTGTAGAGAGGATTTGACACTT 59.456 40.000 0.00 0.00 38.37 3.16
3117 4248 6.043243 TCCTTGTAGAGAGGATTTGACACTTT 59.957 38.462 0.00 0.00 38.37 2.66
3118 4249 7.234782 TCCTTGTAGAGAGGATTTGACACTTTA 59.765 37.037 0.00 0.00 38.37 1.85
3119 4250 7.547370 CCTTGTAGAGAGGATTTGACACTTTAG 59.453 40.741 0.00 0.00 36.33 1.85
3120 4251 7.776618 TGTAGAGAGGATTTGACACTTTAGA 57.223 36.000 0.00 0.00 0.00 2.10
3121 4252 8.190326 TGTAGAGAGGATTTGACACTTTAGAA 57.810 34.615 0.00 0.00 0.00 2.10
3122 4253 8.816894 TGTAGAGAGGATTTGACACTTTAGAAT 58.183 33.333 0.00 0.00 0.00 2.40
3123 4254 9.308318 GTAGAGAGGATTTGACACTTTAGAATC 57.692 37.037 0.00 0.00 0.00 2.52
3124 4255 7.911651 AGAGAGGATTTGACACTTTAGAATCA 58.088 34.615 0.00 0.00 0.00 2.57
3125 4256 8.378565 AGAGAGGATTTGACACTTTAGAATCAA 58.621 33.333 0.00 0.00 0.00 2.57
3126 4257 9.171877 GAGAGGATTTGACACTTTAGAATCAAT 57.828 33.333 0.00 0.00 31.45 2.57
3127 4258 8.954350 AGAGGATTTGACACTTTAGAATCAATG 58.046 33.333 0.00 0.00 31.45 2.82
3128 4259 8.868522 AGGATTTGACACTTTAGAATCAATGA 57.131 30.769 0.00 0.00 31.45 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.322773 CATGACATGTCATCAAGAGTTAGTATT 57.677 33.333 33.46 9.69 46.57 1.89
15 16 8.481314 ACATGACATGTCATCAAGAGTTAGTAT 58.519 33.333 33.46 10.33 46.57 2.12
16 17 7.840931 ACATGACATGTCATCAAGAGTTAGTA 58.159 34.615 33.46 6.78 46.57 1.82
17 18 6.705302 ACATGACATGTCATCAAGAGTTAGT 58.295 36.000 33.46 22.70 46.57 2.24
32 33 5.579904 GTGCTGGCTATATAGACATGACATG 59.420 44.000 18.77 14.02 41.28 3.21
33 34 5.623141 CGTGCTGGCTATATAGACATGACAT 60.623 44.000 18.77 0.00 41.28 3.06
34 35 4.321230 CGTGCTGGCTATATAGACATGACA 60.321 45.833 18.77 13.99 41.28 3.58
35 36 4.169508 CGTGCTGGCTATATAGACATGAC 58.830 47.826 18.77 15.72 41.28 3.06
36 37 3.367395 GCGTGCTGGCTATATAGACATGA 60.367 47.826 18.77 5.72 41.28 3.07
37 38 2.926200 GCGTGCTGGCTATATAGACATG 59.074 50.000 18.77 13.33 41.28 3.21
38 39 2.828520 AGCGTGCTGGCTATATAGACAT 59.171 45.455 18.77 0.00 41.28 3.06
39 40 2.029918 CAGCGTGCTGGCTATATAGACA 60.030 50.000 17.51 17.51 42.53 3.41
40 41 2.600731 CAGCGTGCTGGCTATATAGAC 58.399 52.381 14.16 11.56 42.53 2.59
51 52 2.732412 ATAGTATAGCCAGCGTGCTG 57.268 50.000 14.82 14.82 42.77 4.41
52 53 4.557205 GTTAATAGTATAGCCAGCGTGCT 58.443 43.478 8.11 8.11 45.38 4.40
53 54 3.678548 GGTTAATAGTATAGCCAGCGTGC 59.321 47.826 0.00 0.00 0.00 5.34
54 55 4.878439 TGGTTAATAGTATAGCCAGCGTG 58.122 43.478 0.00 0.00 32.02 5.34
55 56 5.479306 CATGGTTAATAGTATAGCCAGCGT 58.521 41.667 6.46 0.00 39.18 5.07
56 57 4.330074 GCATGGTTAATAGTATAGCCAGCG 59.670 45.833 0.00 0.00 39.18 5.18
57 58 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
58 59 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
59 60 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
60 61 7.764901 GGTTAGAGCATGGTTAATAGTATAGCC 59.235 40.741 0.00 0.00 0.00 3.93
61 62 7.764901 GGGTTAGAGCATGGTTAATAGTATAGC 59.235 40.741 0.00 0.00 0.00 2.97
62 63 8.812972 TGGGTTAGAGCATGGTTAATAGTATAG 58.187 37.037 0.00 0.00 0.00 1.31
63 64 8.730093 TGGGTTAGAGCATGGTTAATAGTATA 57.270 34.615 0.00 0.00 0.00 1.47
64 65 7.626999 TGGGTTAGAGCATGGTTAATAGTAT 57.373 36.000 0.00 0.00 0.00 2.12
65 66 7.626999 ATGGGTTAGAGCATGGTTAATAGTA 57.373 36.000 0.00 0.00 0.00 1.82
66 67 5.968676 TGGGTTAGAGCATGGTTAATAGT 57.031 39.130 0.00 0.00 0.00 2.12
67 68 7.823745 AAATGGGTTAGAGCATGGTTAATAG 57.176 36.000 0.00 0.00 0.00 1.73
68 69 8.499406 AGTAAATGGGTTAGAGCATGGTTAATA 58.501 33.333 0.00 0.00 0.00 0.98
69 70 7.285401 CAGTAAATGGGTTAGAGCATGGTTAAT 59.715 37.037 0.00 0.00 0.00 1.40
70 71 6.601613 CAGTAAATGGGTTAGAGCATGGTTAA 59.398 38.462 0.00 0.00 0.00 2.01
71 72 6.069905 TCAGTAAATGGGTTAGAGCATGGTTA 60.070 38.462 0.00 0.00 0.00 2.85
72 73 4.949856 CAGTAAATGGGTTAGAGCATGGTT 59.050 41.667 0.00 0.00 0.00 3.67
73 74 4.227300 TCAGTAAATGGGTTAGAGCATGGT 59.773 41.667 0.00 0.00 0.00 3.55
74 75 4.780815 TCAGTAAATGGGTTAGAGCATGG 58.219 43.478 0.00 0.00 0.00 3.66
75 76 5.297776 CCTTCAGTAAATGGGTTAGAGCATG 59.702 44.000 0.00 0.00 0.00 4.06
76 77 5.191722 TCCTTCAGTAAATGGGTTAGAGCAT 59.808 40.000 0.00 0.00 0.00 3.79
77 78 4.534500 TCCTTCAGTAAATGGGTTAGAGCA 59.466 41.667 0.00 0.00 0.00 4.26
78 79 5.099042 TCCTTCAGTAAATGGGTTAGAGC 57.901 43.478 0.00 0.00 0.00 4.09
79 80 7.883311 TCTTTTCCTTCAGTAAATGGGTTAGAG 59.117 37.037 0.00 0.00 0.00 2.43
80 81 7.751646 TCTTTTCCTTCAGTAAATGGGTTAGA 58.248 34.615 0.00 0.00 0.00 2.10
81 82 7.996098 TCTTTTCCTTCAGTAAATGGGTTAG 57.004 36.000 0.00 0.00 0.00 2.34
82 83 8.770010 TTTCTTTTCCTTCAGTAAATGGGTTA 57.230 30.769 0.00 0.00 0.00 2.85
83 84 7.669089 TTTCTTTTCCTTCAGTAAATGGGTT 57.331 32.000 0.00 0.00 0.00 4.11
84 85 6.239317 GCTTTCTTTTCCTTCAGTAAATGGGT 60.239 38.462 0.00 0.00 0.00 4.51
85 86 6.159293 GCTTTCTTTTCCTTCAGTAAATGGG 58.841 40.000 0.00 0.00 0.00 4.00
86 87 6.159293 GGCTTTCTTTTCCTTCAGTAAATGG 58.841 40.000 0.00 0.00 0.00 3.16
87 88 6.159293 GGGCTTTCTTTTCCTTCAGTAAATG 58.841 40.000 0.00 0.00 0.00 2.32
88 89 5.838521 TGGGCTTTCTTTTCCTTCAGTAAAT 59.161 36.000 0.00 0.00 0.00 1.40
89 90 5.205056 TGGGCTTTCTTTTCCTTCAGTAAA 58.795 37.500 0.00 0.00 0.00 2.01
90 91 4.798882 TGGGCTTTCTTTTCCTTCAGTAA 58.201 39.130 0.00 0.00 0.00 2.24
91 92 4.447138 TGGGCTTTCTTTTCCTTCAGTA 57.553 40.909 0.00 0.00 0.00 2.74
92 93 3.312736 TGGGCTTTCTTTTCCTTCAGT 57.687 42.857 0.00 0.00 0.00 3.41
93 94 4.879197 AATGGGCTTTCTTTTCCTTCAG 57.121 40.909 0.00 0.00 0.00 3.02
94 95 4.526650 GGTAATGGGCTTTCTTTTCCTTCA 59.473 41.667 0.00 0.00 0.00 3.02
95 96 4.772624 AGGTAATGGGCTTTCTTTTCCTTC 59.227 41.667 0.00 0.00 0.00 3.46
96 97 4.528206 CAGGTAATGGGCTTTCTTTTCCTT 59.472 41.667 0.00 0.00 0.00 3.36
97 98 4.089361 CAGGTAATGGGCTTTCTTTTCCT 58.911 43.478 0.00 0.00 0.00 3.36
98 99 4.086457 TCAGGTAATGGGCTTTCTTTTCC 58.914 43.478 0.00 0.00 0.00 3.13
99 100 5.921962 ATCAGGTAATGGGCTTTCTTTTC 57.078 39.130 0.00 0.00 0.00 2.29
100 101 6.154534 GGTAATCAGGTAATGGGCTTTCTTTT 59.845 38.462 0.00 0.00 0.00 2.27
101 102 5.656859 GGTAATCAGGTAATGGGCTTTCTTT 59.343 40.000 0.00 0.00 0.00 2.52
102 103 5.201243 GGTAATCAGGTAATGGGCTTTCTT 58.799 41.667 0.00 0.00 0.00 2.52
103 104 4.386424 GGGTAATCAGGTAATGGGCTTTCT 60.386 45.833 0.00 0.00 0.00 2.52
104 105 3.889538 GGGTAATCAGGTAATGGGCTTTC 59.110 47.826 0.00 0.00 0.00 2.62
105 106 3.531814 AGGGTAATCAGGTAATGGGCTTT 59.468 43.478 0.00 0.00 0.00 3.51
106 107 3.131252 AGGGTAATCAGGTAATGGGCTT 58.869 45.455 0.00 0.00 0.00 4.35
107 108 2.789219 AGGGTAATCAGGTAATGGGCT 58.211 47.619 0.00 0.00 0.00 5.19
108 109 3.244805 GGTAGGGTAATCAGGTAATGGGC 60.245 52.174 0.00 0.00 0.00 5.36
109 110 3.977999 TGGTAGGGTAATCAGGTAATGGG 59.022 47.826 0.00 0.00 0.00 4.00
110 111 4.410883 TGTGGTAGGGTAATCAGGTAATGG 59.589 45.833 0.00 0.00 0.00 3.16
111 112 5.623956 TGTGGTAGGGTAATCAGGTAATG 57.376 43.478 0.00 0.00 0.00 1.90
112 113 5.104235 GGTTGTGGTAGGGTAATCAGGTAAT 60.104 44.000 0.00 0.00 0.00 1.89
113 114 4.225717 GGTTGTGGTAGGGTAATCAGGTAA 59.774 45.833 0.00 0.00 0.00 2.85
114 115 3.776417 GGTTGTGGTAGGGTAATCAGGTA 59.224 47.826 0.00 0.00 0.00 3.08
115 116 2.574824 GGTTGTGGTAGGGTAATCAGGT 59.425 50.000 0.00 0.00 0.00 4.00
116 117 2.574369 TGGTTGTGGTAGGGTAATCAGG 59.426 50.000 0.00 0.00 0.00 3.86
117 118 3.873910 CTGGTTGTGGTAGGGTAATCAG 58.126 50.000 0.00 0.00 0.00 2.90
118 119 2.026636 GCTGGTTGTGGTAGGGTAATCA 60.027 50.000 0.00 0.00 0.00 2.57
119 120 2.640184 GCTGGTTGTGGTAGGGTAATC 58.360 52.381 0.00 0.00 0.00 1.75
120 121 1.283905 GGCTGGTTGTGGTAGGGTAAT 59.716 52.381 0.00 0.00 0.00 1.89
121 122 0.694196 GGCTGGTTGTGGTAGGGTAA 59.306 55.000 0.00 0.00 0.00 2.85
122 123 1.202769 GGGCTGGTTGTGGTAGGGTA 61.203 60.000 0.00 0.00 0.00 3.69
123 124 2.535331 GGGCTGGTTGTGGTAGGGT 61.535 63.158 0.00 0.00 0.00 4.34
124 125 1.863155 ATGGGCTGGTTGTGGTAGGG 61.863 60.000 0.00 0.00 0.00 3.53
125 126 0.394352 GATGGGCTGGTTGTGGTAGG 60.394 60.000 0.00 0.00 0.00 3.18
126 127 0.620556 AGATGGGCTGGTTGTGGTAG 59.379 55.000 0.00 0.00 0.00 3.18
127 128 0.327924 CAGATGGGCTGGTTGTGGTA 59.672 55.000 0.00 0.00 41.07 3.25
128 129 1.075482 CAGATGGGCTGGTTGTGGT 59.925 57.895 0.00 0.00 41.07 4.16
129 130 2.345760 GCAGATGGGCTGGTTGTGG 61.346 63.158 0.00 0.00 45.03 4.17
130 131 2.345760 GGCAGATGGGCTGGTTGTG 61.346 63.158 0.00 0.00 45.03 3.33
131 132 2.036256 GGCAGATGGGCTGGTTGT 59.964 61.111 0.00 0.00 45.03 3.32
132 133 2.757099 GGGCAGATGGGCTGGTTG 60.757 66.667 0.00 0.00 45.03 3.77
133 134 4.431131 CGGGCAGATGGGCTGGTT 62.431 66.667 0.00 0.00 45.03 3.67
140 141 1.823899 GCTTTACCCGGGCAGATGG 60.824 63.158 24.08 7.44 0.00 3.51
141 142 1.077787 TGCTTTACCCGGGCAGATG 60.078 57.895 24.08 10.05 0.00 2.90
142 143 1.077716 GTGCTTTACCCGGGCAGAT 60.078 57.895 24.08 2.65 36.62 2.90
143 144 2.349755 GTGCTTTACCCGGGCAGA 59.650 61.111 24.08 0.57 36.62 4.26
144 145 3.124921 CGTGCTTTACCCGGGCAG 61.125 66.667 24.08 15.82 36.62 4.85
145 146 3.599285 CTCGTGCTTTACCCGGGCA 62.599 63.158 24.08 4.00 0.00 5.36
146 147 2.818274 CTCGTGCTTTACCCGGGC 60.818 66.667 24.08 6.53 0.00 6.13
147 148 2.125269 CCTCGTGCTTTACCCGGG 60.125 66.667 22.25 22.25 0.00 5.73
148 149 2.818274 GCCTCGTGCTTTACCCGG 60.818 66.667 0.00 0.00 36.87 5.73
149 150 3.186047 CGCCTCGTGCTTTACCCG 61.186 66.667 0.00 0.00 38.05 5.28
150 151 1.670083 AACGCCTCGTGCTTTACCC 60.670 57.895 0.00 0.00 39.99 3.69
151 152 0.947180 TCAACGCCTCGTGCTTTACC 60.947 55.000 0.00 0.00 39.99 2.85
152 153 0.163146 GTCAACGCCTCGTGCTTTAC 59.837 55.000 0.00 0.00 39.99 2.01
153 154 1.279527 CGTCAACGCCTCGTGCTTTA 61.280 55.000 0.00 0.00 39.99 1.85
154 155 2.594962 CGTCAACGCCTCGTGCTTT 61.595 57.895 0.00 0.00 39.99 3.51
155 156 2.765250 ATCGTCAACGCCTCGTGCTT 62.765 55.000 0.00 0.00 39.99 3.91
156 157 2.765250 AATCGTCAACGCCTCGTGCT 62.765 55.000 0.00 0.00 39.99 4.40
157 158 1.897398 AAATCGTCAACGCCTCGTGC 61.897 55.000 0.00 0.00 39.99 5.34
158 159 0.511221 AAAATCGTCAACGCCTCGTG 59.489 50.000 0.00 0.00 39.99 4.35
159 160 1.193874 GAAAAATCGTCAACGCCTCGT 59.806 47.619 0.00 0.00 43.97 4.18
160 161 1.193650 TGAAAAATCGTCAACGCCTCG 59.806 47.619 0.00 0.00 39.60 4.63
161 162 2.961522 TGAAAAATCGTCAACGCCTC 57.038 45.000 0.00 0.00 39.60 4.70
162 163 4.000988 ACTATGAAAAATCGTCAACGCCT 58.999 39.130 0.00 0.00 39.60 5.52
163 164 4.336532 ACTATGAAAAATCGTCAACGCC 57.663 40.909 0.00 0.00 39.60 5.68
164 165 7.314944 CGTTATACTATGAAAAATCGTCAACGC 59.685 37.037 0.00 0.00 39.60 4.84
165 166 7.786118 CCGTTATACTATGAAAAATCGTCAACG 59.214 37.037 0.00 0.00 41.45 4.10
166 167 8.060090 CCCGTTATACTATGAAAAATCGTCAAC 58.940 37.037 0.00 0.00 0.00 3.18
167 168 7.225145 CCCCGTTATACTATGAAAAATCGTCAA 59.775 37.037 0.00 0.00 0.00 3.18
168 169 6.702723 CCCCGTTATACTATGAAAAATCGTCA 59.297 38.462 0.00 0.00 0.00 4.35
169 170 6.347160 GCCCCGTTATACTATGAAAAATCGTC 60.347 42.308 0.00 0.00 0.00 4.20
170 171 5.467735 GCCCCGTTATACTATGAAAAATCGT 59.532 40.000 0.00 0.00 0.00 3.73
171 172 5.106830 GGCCCCGTTATACTATGAAAAATCG 60.107 44.000 0.00 0.00 0.00 3.34
172 173 5.766174 TGGCCCCGTTATACTATGAAAAATC 59.234 40.000 0.00 0.00 0.00 2.17
173 174 5.697067 TGGCCCCGTTATACTATGAAAAAT 58.303 37.500 0.00 0.00 0.00 1.82
174 175 5.113446 TGGCCCCGTTATACTATGAAAAA 57.887 39.130 0.00 0.00 0.00 1.94
175 176 4.774660 TGGCCCCGTTATACTATGAAAA 57.225 40.909 0.00 0.00 0.00 2.29
176 177 4.986054 ATGGCCCCGTTATACTATGAAA 57.014 40.909 0.00 0.00 0.00 2.69
177 178 4.103469 ACAATGGCCCCGTTATACTATGAA 59.897 41.667 0.00 0.00 0.00 2.57
178 179 3.649023 ACAATGGCCCCGTTATACTATGA 59.351 43.478 0.00 0.00 0.00 2.15
179 180 4.015872 ACAATGGCCCCGTTATACTATG 57.984 45.455 0.00 0.00 0.00 2.23
180 181 4.019950 GGTACAATGGCCCCGTTATACTAT 60.020 45.833 0.00 0.00 28.81 2.12
181 182 3.324556 GGTACAATGGCCCCGTTATACTA 59.675 47.826 0.00 0.00 28.81 1.82
182 183 2.105306 GGTACAATGGCCCCGTTATACT 59.895 50.000 0.00 0.00 28.81 2.12
183 184 2.105306 AGGTACAATGGCCCCGTTATAC 59.895 50.000 0.00 0.13 0.00 1.47
184 185 2.410575 AGGTACAATGGCCCCGTTATA 58.589 47.619 0.00 0.00 0.00 0.98
185 186 1.218844 AGGTACAATGGCCCCGTTAT 58.781 50.000 0.00 0.00 0.00 1.89
186 187 1.764134 CTAGGTACAATGGCCCCGTTA 59.236 52.381 0.00 0.00 0.00 3.18
187 188 0.544697 CTAGGTACAATGGCCCCGTT 59.455 55.000 0.00 0.00 0.00 4.44
188 189 1.979619 GCTAGGTACAATGGCCCCGT 61.980 60.000 0.00 0.00 0.00 5.28
189 190 1.227853 GCTAGGTACAATGGCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
190 191 1.227853 CGCTAGGTACAATGGCCCC 60.228 63.158 0.00 0.00 0.00 5.80
191 192 0.814010 CACGCTAGGTACAATGGCCC 60.814 60.000 0.00 0.00 0.00 5.80
192 193 0.107848 ACACGCTAGGTACAATGGCC 60.108 55.000 0.00 0.00 0.00 5.36
193 194 2.470821 CTACACGCTAGGTACAATGGC 58.529 52.381 0.00 0.00 0.00 4.40
194 195 2.470821 GCTACACGCTAGGTACAATGG 58.529 52.381 0.00 0.00 35.14 3.16
195 196 2.117137 CGCTACACGCTAGGTACAATG 58.883 52.381 0.00 0.00 36.13 2.82
196 197 2.019249 TCGCTACACGCTAGGTACAAT 58.981 47.619 0.00 0.00 43.23 2.71
197 198 1.399440 CTCGCTACACGCTAGGTACAA 59.601 52.381 0.00 0.00 43.23 2.41
198 199 1.012086 CTCGCTACACGCTAGGTACA 58.988 55.000 0.00 0.00 43.23 2.90
199 200 1.261089 CTCTCGCTACACGCTAGGTAC 59.739 57.143 0.00 0.00 43.23 3.34
200 201 1.137675 TCTCTCGCTACACGCTAGGTA 59.862 52.381 0.00 0.00 43.23 3.08
201 202 0.107800 TCTCTCGCTACACGCTAGGT 60.108 55.000 0.00 0.00 43.23 3.08
202 203 0.584396 CTCTCTCGCTACACGCTAGG 59.416 60.000 0.00 0.00 43.23 3.02
203 204 0.041663 GCTCTCTCGCTACACGCTAG 60.042 60.000 0.00 0.00 43.23 3.42
204 205 1.437772 GGCTCTCTCGCTACACGCTA 61.438 60.000 0.00 0.00 43.23 4.26
205 206 2.766400 GGCTCTCTCGCTACACGCT 61.766 63.158 0.00 0.00 43.23 5.07
206 207 2.278271 GGCTCTCTCGCTACACGC 60.278 66.667 0.00 0.00 43.23 5.34
207 208 2.409651 GGGCTCTCTCGCTACACG 59.590 66.667 0.00 0.00 45.62 4.49
208 209 2.409651 CGGGCTCTCTCGCTACAC 59.590 66.667 0.00 0.00 0.00 2.90
209 210 2.829003 CCGGGCTCTCTCGCTACA 60.829 66.667 0.00 0.00 0.00 2.74
210 211 3.597728 CCCGGGCTCTCTCGCTAC 61.598 72.222 8.08 0.00 0.00 3.58
214 215 4.521062 CTTGCCCGGGCTCTCTCG 62.521 72.222 43.34 21.72 42.51 4.04
215 216 3.394836 ACTTGCCCGGGCTCTCTC 61.395 66.667 43.34 17.00 42.51 3.20
216 217 3.710722 CACTTGCCCGGGCTCTCT 61.711 66.667 43.34 21.94 42.51 3.10
254 255 4.291984 CCTGAAGTATTTAGTGGCGGAGC 61.292 52.174 0.00 0.00 41.30 4.70
255 256 3.458189 CCTGAAGTATTTAGTGGCGGAG 58.542 50.000 0.00 0.00 28.20 4.63
256 257 2.169769 CCCTGAAGTATTTAGTGGCGGA 59.830 50.000 0.00 0.00 28.20 5.54
257 258 2.169769 TCCCTGAAGTATTTAGTGGCGG 59.830 50.000 0.00 0.00 28.20 6.13
258 259 3.536956 TCCCTGAAGTATTTAGTGGCG 57.463 47.619 0.00 0.00 28.20 5.69
259 260 6.262496 GGTATTTCCCTGAAGTATTTAGTGGC 59.738 42.308 0.00 0.00 28.20 5.01
260 261 7.282450 GTGGTATTTCCCTGAAGTATTTAGTGG 59.718 40.741 0.00 0.00 34.77 4.00
261 262 7.011109 CGTGGTATTTCCCTGAAGTATTTAGTG 59.989 40.741 0.00 0.00 34.77 2.74
262 263 7.046033 CGTGGTATTTCCCTGAAGTATTTAGT 58.954 38.462 0.00 0.00 34.77 2.24
263 264 7.224167 GTCGTGGTATTTCCCTGAAGTATTTAG 59.776 40.741 0.00 0.00 34.77 1.85
264 265 7.043565 GTCGTGGTATTTCCCTGAAGTATTTA 58.956 38.462 0.00 0.00 34.77 1.40
265 266 5.878669 GTCGTGGTATTTCCCTGAAGTATTT 59.121 40.000 0.00 0.00 34.77 1.40
275 276 5.266733 TGTACTATGTCGTGGTATTTCCC 57.733 43.478 0.00 0.00 34.77 3.97
277 278 5.233689 GCCTTGTACTATGTCGTGGTATTTC 59.766 44.000 0.00 0.00 0.00 2.17
364 816 1.594331 ACGGAAACTCACTTTGGCTC 58.406 50.000 0.00 0.00 0.00 4.70
390 842 1.737793 GCAGTTTCGTAACCATGGAGG 59.262 52.381 21.47 2.32 45.67 4.30
437 963 4.789075 CCGCCGTCCAGTGTACCG 62.789 72.222 0.00 0.00 0.00 4.02
452 978 2.413437 CTACGCTGAGCTCCATCCCG 62.413 65.000 12.15 8.92 0.00 5.14
453 979 1.365633 CTACGCTGAGCTCCATCCC 59.634 63.158 12.15 0.00 0.00 3.85
541 1067 4.778143 GTGGCGGGAATCTGGCGT 62.778 66.667 0.00 0.00 46.63 5.68
578 1107 1.196808 ACCACACGATCGATTTGTTGC 59.803 47.619 24.34 0.00 0.00 4.17
635 1164 2.282180 TCTGGGCCAGCGTTTTCC 60.282 61.111 29.02 0.00 0.00 3.13
909 1439 4.705337 AGTCGTTCCTCTTGATCTGTAC 57.295 45.455 0.00 0.00 0.00 2.90
1249 1798 0.887387 AGTACGCACGGCCAAACAAT 60.887 50.000 2.24 0.00 0.00 2.71
1268 1817 5.223655 TCCAATCTAGGAGAGAGAGAGAGA 58.776 45.833 0.00 0.00 37.70 3.10
1269 1818 5.567037 TCCAATCTAGGAGAGAGAGAGAG 57.433 47.826 0.00 0.00 37.70 3.20
1270 1819 7.311865 CCATATCCAATCTAGGAGAGAGAGAGA 60.312 44.444 0.00 0.00 41.90 3.10
1271 1820 6.830324 CCATATCCAATCTAGGAGAGAGAGAG 59.170 46.154 0.00 0.00 41.90 3.20
1272 1821 6.507127 TCCATATCCAATCTAGGAGAGAGAGA 59.493 42.308 0.00 0.00 41.90 3.10
1273 1822 6.730447 TCCATATCCAATCTAGGAGAGAGAG 58.270 44.000 0.00 0.00 41.90 3.20
1274 1823 6.726733 TCCATATCCAATCTAGGAGAGAGA 57.273 41.667 0.00 0.00 41.90 3.10
1538 2087 3.977244 GCGTGTTTGGCCCTGGTG 61.977 66.667 0.00 0.00 0.00 4.17
1622 2171 4.446413 GTCATCCCGGTCGCCGTT 62.446 66.667 15.38 0.14 46.80 4.44
1973 2528 4.718940 AATAAAAATGAACCCGGCAGAG 57.281 40.909 0.00 0.00 0.00 3.35
1974 2529 5.476091 AAAATAAAAATGAACCCGGCAGA 57.524 34.783 0.00 0.00 0.00 4.26
1975 2530 7.841915 AATAAAATAAAAATGAACCCGGCAG 57.158 32.000 0.00 0.00 0.00 4.85
1976 2531 8.622948 AAAATAAAATAAAAATGAACCCGGCA 57.377 26.923 0.00 0.00 0.00 5.69
2050 2609 3.045601 AGATCGATCCCTTTTATGGCG 57.954 47.619 21.66 0.00 0.00 5.69
2093 2652 5.660864 ACAACTCCCAGGAGAAAATGAAAAA 59.339 36.000 20.57 0.00 44.53 1.94
2123 2684 4.039124 AGACTTTTGCCCAGGTTTACATTG 59.961 41.667 0.00 0.00 0.00 2.82
2279 2871 8.980143 TTGTAAATAAATTTGGAGCAGCTTAC 57.020 30.769 0.00 0.00 0.00 2.34
2376 2968 1.592400 CCAAGTCAGAGCCGGACGTA 61.592 60.000 5.05 0.00 40.20 3.57
2464 3056 2.280865 GGTGTAGCTATGGCGGCC 60.281 66.667 13.32 13.32 44.37 6.13
2466 3058 1.227556 GTGGGTGTAGCTATGGCGG 60.228 63.158 0.00 0.00 44.37 6.13
2490 3082 3.839046 TAGGGGACGTGTGGCTGGT 62.839 63.158 0.00 0.00 0.00 4.00
2493 3085 1.982938 GAGTAGGGGACGTGTGGCT 60.983 63.158 0.00 0.00 0.00 4.75
2499 3091 2.043248 ATGCGGAGTAGGGGACGT 60.043 61.111 0.00 0.00 0.00 4.34
2556 3148 7.889873 AGATCTAACTACAGAGCTACAATGT 57.110 36.000 0.00 0.00 39.45 2.71
2562 3155 8.892530 ACCCTAATAGATCTAACTACAGAGCTA 58.107 37.037 6.52 1.05 45.00 3.32
2581 3174 6.043938 TCAGAGAACCAAACTGTAACCCTAAT 59.956 38.462 0.00 0.00 33.93 1.73
2602 3195 2.092049 TCGGACTACCTTAGCCATCAGA 60.092 50.000 0.00 0.00 0.00 3.27
2607 3200 3.635373 CACTATTCGGACTACCTTAGCCA 59.365 47.826 0.00 0.00 0.00 4.75
2611 3204 6.660521 TCAAAGTCACTATTCGGACTACCTTA 59.339 38.462 0.00 0.00 43.26 2.69
2639 3232 0.982852 ACCATCGGAGCTCCAATCCA 60.983 55.000 31.67 10.43 36.57 3.41
2652 3245 3.245797 CGCTATTGTGATCCTACCATCG 58.754 50.000 0.00 0.00 0.00 3.84
2669 3262 3.728076 ACGATAAAAGAGATGGCGCTA 57.272 42.857 7.64 0.00 0.00 4.26
2670 3263 2.604046 ACGATAAAAGAGATGGCGCT 57.396 45.000 7.64 0.00 0.00 5.92
2671 3264 3.675467 AAACGATAAAAGAGATGGCGC 57.325 42.857 0.00 0.00 0.00 6.53
2700 3824 2.247790 CAAAGGTGCTTGGAGACCG 58.752 57.895 0.00 0.00 37.32 4.79
2740 3864 6.254157 ACGAATGCATTGAACATATGAAAAGC 59.746 34.615 18.59 9.68 0.00 3.51
2751 3875 3.119849 AGGTGCTAACGAATGCATTGAAC 60.120 43.478 18.59 6.47 41.45 3.18
2774 3898 8.253113 GGATTTTGGTGATAATGACAACTGATT 58.747 33.333 0.00 0.00 0.00 2.57
2779 3904 6.924111 AGTGGATTTTGGTGATAATGACAAC 58.076 36.000 0.00 0.00 0.00 3.32
2798 3923 6.710597 AAGAACATCTATACGCTAAGTGGA 57.289 37.500 0.00 0.00 0.00 4.02
2825 3950 2.205911 GCGAGAGATTGGTAAGCTTCC 58.794 52.381 0.00 5.03 0.00 3.46
2830 3955 2.799412 GCTCATGCGAGAGATTGGTAAG 59.201 50.000 9.19 0.00 42.34 2.34
2833 3958 0.829333 AGCTCATGCGAGAGATTGGT 59.171 50.000 9.19 0.00 42.34 3.67
2843 3968 0.098200 CATGTGGACAAGCTCATGCG 59.902 55.000 0.00 0.00 45.42 4.73
2849 3974 0.326264 GGAGACCATGTGGACAAGCT 59.674 55.000 5.96 0.00 38.94 3.74
2854 3979 2.237143 TGATCTTGGAGACCATGTGGAC 59.763 50.000 5.96 0.00 38.94 4.02
2856 3981 3.118149 TCATGATCTTGGAGACCATGTGG 60.118 47.826 11.10 0.00 42.17 4.17
2929 4060 0.327924 TCCCACAACGCCATTGAGAT 59.672 50.000 2.48 0.00 41.23 2.75
2936 4067 0.676466 CTTATGCTCCCACAACGCCA 60.676 55.000 0.00 0.00 0.00 5.69
2972 4103 2.751806 AGCAAGCTCATGGTTAAAGCTC 59.248 45.455 6.34 0.00 45.33 4.09
2980 4111 0.111061 TGGTCAAGCAAGCTCATGGT 59.889 50.000 0.00 0.00 0.00 3.55
2995 4126 1.332195 AAGGCAAGGCTTCTTTGGTC 58.668 50.000 0.00 0.00 0.00 4.02
2996 4127 1.688735 GAAAGGCAAGGCTTCTTTGGT 59.311 47.619 16.06 0.00 31.72 3.67
2997 4128 1.001293 GGAAAGGCAAGGCTTCTTTGG 59.999 52.381 16.06 0.00 31.72 3.28
2998 4129 1.966354 AGGAAAGGCAAGGCTTCTTTG 59.034 47.619 16.06 0.00 31.72 2.77
2999 4130 2.242926 GAGGAAAGGCAAGGCTTCTTT 58.757 47.619 12.26 12.26 33.93 2.52
3000 4131 1.548809 GGAGGAAAGGCAAGGCTTCTT 60.549 52.381 9.42 0.00 0.00 2.52
3001 4132 0.038890 GGAGGAAAGGCAAGGCTTCT 59.961 55.000 9.42 3.49 0.00 2.85
3002 4133 0.038890 AGGAGGAAAGGCAAGGCTTC 59.961 55.000 9.42 3.78 0.00 3.86
3003 4134 1.372501 TAGGAGGAAAGGCAAGGCTT 58.627 50.000 2.72 2.72 0.00 4.35
3004 4135 1.601248 ATAGGAGGAAAGGCAAGGCT 58.399 50.000 0.00 0.00 0.00 4.58
3005 4136 3.416156 CATATAGGAGGAAAGGCAAGGC 58.584 50.000 0.00 0.00 0.00 4.35
3006 4137 3.416156 GCATATAGGAGGAAAGGCAAGG 58.584 50.000 0.00 0.00 0.00 3.61
3007 4138 3.070018 CGCATATAGGAGGAAAGGCAAG 58.930 50.000 0.00 0.00 0.00 4.01
3008 4139 2.810400 GCGCATATAGGAGGAAAGGCAA 60.810 50.000 0.30 0.00 0.00 4.52
3009 4140 1.270839 GCGCATATAGGAGGAAAGGCA 60.271 52.381 0.30 0.00 0.00 4.75
3010 4141 1.002544 AGCGCATATAGGAGGAAAGGC 59.997 52.381 11.47 0.00 0.00 4.35
3011 4142 2.037772 ACAGCGCATATAGGAGGAAAGG 59.962 50.000 11.47 0.00 0.00 3.11
3012 4143 3.393089 ACAGCGCATATAGGAGGAAAG 57.607 47.619 11.47 0.00 0.00 2.62
3013 4144 3.838244 AACAGCGCATATAGGAGGAAA 57.162 42.857 11.47 0.00 0.00 3.13
3014 4145 3.258372 CCTAACAGCGCATATAGGAGGAA 59.742 47.826 21.20 0.00 37.67 3.36
3015 4146 2.826128 CCTAACAGCGCATATAGGAGGA 59.174 50.000 21.20 0.00 37.67 3.71
3016 4147 2.826128 TCCTAACAGCGCATATAGGAGG 59.174 50.000 23.21 14.36 39.13 4.30
3017 4148 4.238514 GTTCCTAACAGCGCATATAGGAG 58.761 47.826 24.65 8.72 43.46 3.69
3018 4149 3.006537 GGTTCCTAACAGCGCATATAGGA 59.993 47.826 23.21 23.21 41.58 2.94
3019 4150 3.006967 AGGTTCCTAACAGCGCATATAGG 59.993 47.826 20.25 20.25 36.96 2.57
3020 4151 4.258702 AGGTTCCTAACAGCGCATATAG 57.741 45.455 11.47 8.28 0.00 1.31
3021 4152 4.344102 AGAAGGTTCCTAACAGCGCATATA 59.656 41.667 11.47 0.00 0.00 0.86
3022 4153 3.134804 AGAAGGTTCCTAACAGCGCATAT 59.865 43.478 11.47 0.00 0.00 1.78
3023 4154 2.500098 AGAAGGTTCCTAACAGCGCATA 59.500 45.455 11.47 0.00 0.00 3.14
3024 4155 1.279271 AGAAGGTTCCTAACAGCGCAT 59.721 47.619 11.47 0.00 0.00 4.73
3025 4156 0.685097 AGAAGGTTCCTAACAGCGCA 59.315 50.000 11.47 0.00 0.00 6.09
3026 4157 1.360820 GAGAAGGTTCCTAACAGCGC 58.639 55.000 0.00 0.00 0.00 5.92
3027 4158 1.550976 AGGAGAAGGTTCCTAACAGCG 59.449 52.381 0.00 0.00 45.76 5.18
3028 4159 3.704800 AAGGAGAAGGTTCCTAACAGC 57.295 47.619 0.00 0.00 46.90 4.40
3029 4160 6.546428 TGATAAGGAGAAGGTTCCTAACAG 57.454 41.667 0.00 0.00 46.90 3.16
3030 4161 6.945636 TTGATAAGGAGAAGGTTCCTAACA 57.054 37.500 0.00 0.00 46.90 2.41
3031 4162 8.809468 ATTTTGATAAGGAGAAGGTTCCTAAC 57.191 34.615 0.00 0.00 46.90 2.34
3035 4166 9.408648 TGATAATTTTGATAAGGAGAAGGTTCC 57.591 33.333 0.00 0.00 37.52 3.62
3038 4169 8.907885 GCTTGATAATTTTGATAAGGAGAAGGT 58.092 33.333 0.00 0.00 0.00 3.50
3039 4170 8.355913 GGCTTGATAATTTTGATAAGGAGAAGG 58.644 37.037 0.00 0.00 0.00 3.46
3040 4171 9.129532 AGGCTTGATAATTTTGATAAGGAGAAG 57.870 33.333 0.00 0.00 0.00 2.85
3048 4179 9.507329 GGACTCATAGGCTTGATAATTTTGATA 57.493 33.333 0.00 0.00 0.00 2.15
3049 4180 8.000709 TGGACTCATAGGCTTGATAATTTTGAT 58.999 33.333 0.00 0.00 0.00 2.57
3050 4181 7.345691 TGGACTCATAGGCTTGATAATTTTGA 58.654 34.615 0.00 0.00 0.00 2.69
3051 4182 7.572523 TGGACTCATAGGCTTGATAATTTTG 57.427 36.000 0.00 0.00 0.00 2.44
3052 4183 8.773033 AATGGACTCATAGGCTTGATAATTTT 57.227 30.769 0.00 0.00 32.44 1.82
3053 4184 8.773033 AAATGGACTCATAGGCTTGATAATTT 57.227 30.769 0.00 0.00 32.44 1.82
3054 4185 8.773033 AAAATGGACTCATAGGCTTGATAATT 57.227 30.769 0.00 0.00 32.44 1.40
3055 4186 8.773033 AAAAATGGACTCATAGGCTTGATAAT 57.227 30.769 0.00 0.00 32.44 1.28
3056 4187 9.342308 CTAAAAATGGACTCATAGGCTTGATAA 57.658 33.333 0.00 0.00 32.44 1.75
3057 4188 8.494433 ACTAAAAATGGACTCATAGGCTTGATA 58.506 33.333 0.00 0.00 32.44 2.15
3058 4189 7.284034 CACTAAAAATGGACTCATAGGCTTGAT 59.716 37.037 0.00 0.00 32.44 2.57
3059 4190 6.599244 CACTAAAAATGGACTCATAGGCTTGA 59.401 38.462 0.00 0.00 32.44 3.02
3060 4191 6.183360 CCACTAAAAATGGACTCATAGGCTTG 60.183 42.308 0.00 0.00 39.87 4.01
3061 4192 5.888161 CCACTAAAAATGGACTCATAGGCTT 59.112 40.000 0.00 0.00 39.87 4.35
3062 4193 5.440610 CCACTAAAAATGGACTCATAGGCT 58.559 41.667 0.00 0.00 39.87 4.58
3063 4194 4.036852 GCCACTAAAAATGGACTCATAGGC 59.963 45.833 0.00 0.00 39.87 3.93
3064 4195 4.273480 CGCCACTAAAAATGGACTCATAGG 59.727 45.833 0.00 0.00 39.87 2.57
3065 4196 4.273480 CCGCCACTAAAAATGGACTCATAG 59.727 45.833 0.00 0.00 39.87 2.23
3066 4197 4.080807 TCCGCCACTAAAAATGGACTCATA 60.081 41.667 0.00 0.00 39.87 2.15
3067 4198 3.016736 CCGCCACTAAAAATGGACTCAT 58.983 45.455 0.00 0.00 39.87 2.90
3068 4199 2.039216 TCCGCCACTAAAAATGGACTCA 59.961 45.455 0.00 0.00 39.87 3.41
3069 4200 2.706890 TCCGCCACTAAAAATGGACTC 58.293 47.619 0.00 0.00 39.87 3.36
3070 4201 2.871096 TCCGCCACTAAAAATGGACT 57.129 45.000 0.00 0.00 39.87 3.85
3071 4202 2.752903 ACATCCGCCACTAAAAATGGAC 59.247 45.455 0.00 0.00 39.87 4.02
3072 4203 3.013921 GACATCCGCCACTAAAAATGGA 58.986 45.455 0.00 0.00 39.87 3.41
3073 4204 2.099098 GGACATCCGCCACTAAAAATGG 59.901 50.000 0.00 0.00 40.50 3.16
3074 4205 3.016736 AGGACATCCGCCACTAAAAATG 58.983 45.455 0.00 0.00 42.08 2.32
3075 4206 3.366052 AGGACATCCGCCACTAAAAAT 57.634 42.857 0.00 0.00 42.08 1.82
3076 4207 2.817258 CAAGGACATCCGCCACTAAAAA 59.183 45.455 0.00 0.00 42.08 1.94
3077 4208 2.224670 ACAAGGACATCCGCCACTAAAA 60.225 45.455 0.00 0.00 42.08 1.52
3078 4209 1.349688 ACAAGGACATCCGCCACTAAA 59.650 47.619 0.00 0.00 42.08 1.85
3079 4210 0.981183 ACAAGGACATCCGCCACTAA 59.019 50.000 0.00 0.00 42.08 2.24
3080 4211 1.754803 CTACAAGGACATCCGCCACTA 59.245 52.381 0.00 0.00 42.08 2.74
3081 4212 0.537188 CTACAAGGACATCCGCCACT 59.463 55.000 0.00 0.00 42.08 4.00
3082 4213 0.535335 TCTACAAGGACATCCGCCAC 59.465 55.000 0.00 0.00 42.08 5.01
3083 4214 0.824109 CTCTACAAGGACATCCGCCA 59.176 55.000 0.00 0.00 42.08 5.69
3084 4215 1.067821 CTCTCTACAAGGACATCCGCC 59.932 57.143 0.00 0.00 42.08 6.13
3085 4216 1.067821 CCTCTCTACAAGGACATCCGC 59.932 57.143 0.00 0.00 42.08 5.54
3086 4217 2.656002 TCCTCTCTACAAGGACATCCG 58.344 52.381 0.00 0.00 38.01 4.18
3087 4218 5.129485 TCAAATCCTCTCTACAAGGACATCC 59.871 44.000 0.00 0.00 45.50 3.51
3088 4219 6.045955 GTCAAATCCTCTCTACAAGGACATC 58.954 44.000 0.00 0.00 45.50 3.06
3089 4220 5.485353 TGTCAAATCCTCTCTACAAGGACAT 59.515 40.000 0.00 0.00 45.50 3.06
3090 4221 4.838423 TGTCAAATCCTCTCTACAAGGACA 59.162 41.667 0.00 0.00 45.50 4.02
3091 4222 5.046950 AGTGTCAAATCCTCTCTACAAGGAC 60.047 44.000 0.00 0.00 45.50 3.85
3092 4223 5.087323 AGTGTCAAATCCTCTCTACAAGGA 58.913 41.667 0.00 0.00 46.68 3.36
3093 4224 5.413309 AGTGTCAAATCCTCTCTACAAGG 57.587 43.478 0.00 0.00 35.05 3.61
3094 4225 8.307483 TCTAAAGTGTCAAATCCTCTCTACAAG 58.693 37.037 0.00 0.00 0.00 3.16
3095 4226 8.190326 TCTAAAGTGTCAAATCCTCTCTACAA 57.810 34.615 0.00 0.00 0.00 2.41
3096 4227 7.776618 TCTAAAGTGTCAAATCCTCTCTACA 57.223 36.000 0.00 0.00 0.00 2.74
3097 4228 9.308318 GATTCTAAAGTGTCAAATCCTCTCTAC 57.692 37.037 0.00 0.00 0.00 2.59
3098 4229 9.035890 TGATTCTAAAGTGTCAAATCCTCTCTA 57.964 33.333 0.00 0.00 0.00 2.43
3099 4230 7.911651 TGATTCTAAAGTGTCAAATCCTCTCT 58.088 34.615 0.00 0.00 0.00 3.10
3100 4231 8.553459 TTGATTCTAAAGTGTCAAATCCTCTC 57.447 34.615 0.00 0.00 0.00 3.20
3101 4232 8.954350 CATTGATTCTAAAGTGTCAAATCCTCT 58.046 33.333 0.00 0.00 34.62 3.69
3102 4233 8.950210 TCATTGATTCTAAAGTGTCAAATCCTC 58.050 33.333 0.00 0.00 34.62 3.71
3103 4234 8.868522 TCATTGATTCTAAAGTGTCAAATCCT 57.131 30.769 0.00 0.00 34.62 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.