Multiple sequence alignment - TraesCS6D01G297600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G297600 chr6D 100.000 4398 0 0 1 4398 408664716 408669113 0.000000e+00 8122
1 TraesCS6D01G297600 chr6D 100.000 2929 0 0 4681 7609 408669396 408672324 0.000000e+00 5409
2 TraesCS6D01G297600 chr6D 83.770 191 20 5 5705 5892 356024073 356024255 3.650000e-38 171
3 TraesCS6D01G297600 chr6D 81.356 177 20 6 5717 5887 336841795 336841626 1.720000e-26 132
4 TraesCS6D01G297600 chr6B 95.046 4239 116 36 185 4379 613290861 613295049 0.000000e+00 6578
5 TraesCS6D01G297600 chr6B 96.871 2109 49 11 4681 6777 613295331 613297434 0.000000e+00 3513
6 TraesCS6D01G297600 chr6B 91.517 837 46 8 6777 7609 613297389 613298204 0.000000e+00 1129
7 TraesCS6D01G297600 chr6A 89.713 1915 91 39 246 2114 554507933 554509787 0.000000e+00 2348
8 TraesCS6D01G297600 chr6A 90.889 1339 80 15 2345 3652 554510067 554511394 0.000000e+00 1759
9 TraesCS6D01G297600 chr6A 93.392 908 43 8 5886 6777 554513538 554514444 0.000000e+00 1328
10 TraesCS6D01G297600 chr6A 95.345 666 29 2 3732 4396 554511435 554512099 0.000000e+00 1057
11 TraesCS6D01G297600 chr6A 90.382 759 43 15 4981 5722 554512794 554513539 0.000000e+00 970
12 TraesCS6D01G297600 chr6A 92.693 479 20 7 6777 7248 554514399 554514869 0.000000e+00 676
13 TraesCS6D01G297600 chr6A 91.005 378 21 5 7234 7609 554514899 554515265 1.470000e-136 497
14 TraesCS6D01G297600 chr6A 93.407 182 12 0 4698 4879 381088702 381088883 3.500000e-68 270
15 TraesCS6D01G297600 chr6A 89.189 111 10 2 4875 4983 554512435 554512545 3.700000e-28 137
16 TraesCS6D01G297600 chr2D 94.382 178 9 1 4702 4879 380416529 380416705 9.730000e-69 272
17 TraesCS6D01G297600 chr2D 85.340 191 17 5 5705 5892 347359145 347358963 3.630000e-43 187
18 TraesCS6D01G297600 chr2D 83.770 191 20 5 5705 5892 189761528 189761710 3.650000e-38 171
19 TraesCS6D01G297600 chr2B 93.407 182 12 0 4698 4879 174396578 174396759 3.500000e-68 270
20 TraesCS6D01G297600 chr2B 89.474 171 11 2 5721 5890 312294655 312294491 7.740000e-50 209
21 TraesCS6D01G297600 chr5D 94.286 175 10 0 4705 4879 152754107 152753933 1.260000e-67 268
22 TraesCS6D01G297600 chr5D 88.636 176 17 3 5720 5894 82315849 82315676 2.150000e-50 211
23 TraesCS6D01G297600 chr2A 93.370 181 10 2 4700 4879 515951640 515951819 4.530000e-67 267
24 TraesCS6D01G297600 chr3A 93.296 179 12 0 4701 4879 375018257 375018079 1.630000e-66 265
25 TraesCS6D01G297600 chr5A 92.818 181 13 0 4699 4879 130129649 130129829 5.860000e-66 263
26 TraesCS6D01G297600 chr4D 92.350 183 14 0 4697 4879 313574197 313574379 2.110000e-65 261
27 TraesCS6D01G297600 chr4D 85.340 191 17 5 5705 5892 279494235 279494053 3.630000e-43 187
28 TraesCS6D01G297600 chr7A 90.173 173 9 3 5718 5888 105168192 105168358 1.290000e-52 219
29 TraesCS6D01G297600 chr3D 89.535 172 10 3 5721 5891 397162706 397162542 2.150000e-50 211
30 TraesCS6D01G297600 chr3D 89.474 171 10 3 5719 5888 528190685 528190522 7.740000e-50 209
31 TraesCS6D01G297600 chr1B 89.941 169 10 2 5721 5888 183877361 183877199 2.150000e-50 211
32 TraesCS6D01G297600 chr4B 89.080 174 11 3 5716 5887 483266546 483266379 7.740000e-50 209
33 TraesCS6D01G297600 chr1D 89.474 171 10 3 5720 5889 73732255 73732418 7.740000e-50 209
34 TraesCS6D01G297600 chr1D 85.864 191 16 5 5705 5892 436432530 436432712 7.790000e-45 193
35 TraesCS6D01G297600 chrUn 84.375 192 19 5 5700 5887 46136378 46136194 2.180000e-40 178
36 TraesCS6D01G297600 chr5B 84.239 184 18 5 5707 5887 512992348 512992173 1.310000e-37 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G297600 chr6D 408664716 408672324 7608 False 6765.5 8122 100.000 1 7609 2 chr6D.!!$F2 7608
1 TraesCS6D01G297600 chr6B 613290861 613298204 7343 False 3740.0 6578 94.478 185 7609 3 chr6B.!!$F1 7424
2 TraesCS6D01G297600 chr6A 554507933 554515265 7332 False 1096.5 2348 91.576 246 7609 8 chr6A.!!$F2 7363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.108207 TAAAGTTTGCCCCGTTCCGA 59.892 50.0 0.00 0.0 0.0 4.55 F
100 101 0.247814 CCATCGCTTGTGATTGTCGC 60.248 55.0 0.00 0.0 0.0 5.19 F
1931 2004 0.530744 ACGCACATATGTCTGACGGT 59.469 50.0 5.07 0.0 0.0 4.83 F
2488 2650 0.397941 TCTGGAAAGTGCTGGTCAGG 59.602 55.0 0.00 0.0 0.0 3.86 F
3299 3476 2.719531 TGTTTGCCACTACCAACAGA 57.280 45.0 0.00 0.0 0.0 3.41 F
4396 4596 0.538746 TTGCCCCCGAGTTTTTCCTC 60.539 55.0 0.00 0.0 0.0 3.71 F
5831 6348 1.658994 TTCGTTTTGCTCCGTCTGTT 58.341 45.0 0.00 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2004 0.529773 GATGCGCGTAATCCTCCACA 60.530 55.000 8.43 0.00 0.00 4.17 R
1958 2031 1.895707 CCGCAGGCCAATCATCTCC 60.896 63.158 5.01 0.00 46.14 3.71 R
2809 2982 0.467290 CCCCCATGGTACCAAATCCG 60.467 60.000 20.76 5.56 0.00 4.18 R
4363 4563 2.025699 GGGGGCAATTACTTACCAGTCA 60.026 50.000 0.00 0.00 34.06 3.41 R
4790 5039 2.064762 GAAGCTAGCTATCCATGTGCG 58.935 52.381 19.70 0.00 0.00 5.34 R
6171 6689 0.107831 TGTTCCCAGTTGTTCTCGGG 59.892 55.000 0.00 0.00 36.50 5.14 R
6817 7356 0.099436 GGCGTGCAAAATAGCTGGAG 59.901 55.000 0.00 0.00 34.99 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.509956 TTTGCCAACTGTATACTACAATAAAGT 57.490 29.630 4.17 0.00 38.38 2.66
28 29 9.509956 TTGCCAACTGTATACTACAATAAAGTT 57.490 29.630 4.17 0.14 39.46 2.66
29 30 9.509956 TGCCAACTGTATACTACAATAAAGTTT 57.490 29.630 4.17 0.00 37.66 2.66
30 31 9.769093 GCCAACTGTATACTACAATAAAGTTTG 57.231 33.333 4.17 0.75 37.66 2.93
31 32 9.769093 CCAACTGTATACTACAATAAAGTTTGC 57.231 33.333 4.17 0.00 37.66 3.68
32 33 9.769093 CAACTGTATACTACAATAAAGTTTGCC 57.231 33.333 4.17 0.00 37.66 4.52
33 34 8.502105 ACTGTATACTACAATAAAGTTTGCCC 57.498 34.615 4.17 0.00 38.38 5.36
34 35 7.555195 ACTGTATACTACAATAAAGTTTGCCCC 59.445 37.037 4.17 0.00 38.38 5.80
35 36 6.539464 TGTATACTACAATAAAGTTTGCCCCG 59.461 38.462 4.17 0.00 35.38 5.73
36 37 3.758425 ACTACAATAAAGTTTGCCCCGT 58.242 40.909 0.00 0.00 0.00 5.28
37 38 4.146564 ACTACAATAAAGTTTGCCCCGTT 58.853 39.130 0.00 0.00 0.00 4.44
38 39 3.653539 ACAATAAAGTTTGCCCCGTTC 57.346 42.857 0.00 0.00 0.00 3.95
39 40 2.297880 ACAATAAAGTTTGCCCCGTTCC 59.702 45.455 0.00 0.00 0.00 3.62
40 41 1.170442 ATAAAGTTTGCCCCGTTCCG 58.830 50.000 0.00 0.00 0.00 4.30
41 42 0.108207 TAAAGTTTGCCCCGTTCCGA 59.892 50.000 0.00 0.00 0.00 4.55
42 43 0.538746 AAAGTTTGCCCCGTTCCGAT 60.539 50.000 0.00 0.00 0.00 4.18
43 44 1.241315 AAGTTTGCCCCGTTCCGATG 61.241 55.000 0.00 0.00 0.00 3.84
44 45 1.673009 GTTTGCCCCGTTCCGATGA 60.673 57.895 0.00 0.00 0.00 2.92
45 46 1.376683 TTTGCCCCGTTCCGATGAG 60.377 57.895 0.00 0.00 0.00 2.90
46 47 2.813226 TTTGCCCCGTTCCGATGAGG 62.813 60.000 0.00 0.00 42.97 3.86
47 48 4.547367 GCCCCGTTCCGATGAGGG 62.547 72.222 0.00 0.00 43.41 4.30
48 49 2.762459 CCCCGTTCCGATGAGGGA 60.762 66.667 0.18 0.00 46.64 4.20
49 50 2.797278 CCCCGTTCCGATGAGGGAG 61.797 68.421 0.18 0.00 46.64 4.30
50 51 1.756950 CCCGTTCCGATGAGGGAGA 60.757 63.158 0.00 0.00 46.64 3.71
51 52 1.736586 CCGTTCCGATGAGGGAGAG 59.263 63.158 0.00 0.00 41.52 3.20
52 53 1.736586 CGTTCCGATGAGGGAGAGG 59.263 63.158 0.00 0.00 41.52 3.69
53 54 1.443828 GTTCCGATGAGGGAGAGGC 59.556 63.158 0.00 0.00 41.52 4.70
54 55 2.127869 TTCCGATGAGGGAGAGGCG 61.128 63.158 0.00 0.00 41.52 5.52
55 56 4.292178 CCGATGAGGGAGAGGCGC 62.292 72.222 0.00 0.00 35.97 6.53
56 57 3.222855 CGATGAGGGAGAGGCGCT 61.223 66.667 7.64 0.00 43.30 5.92
57 58 2.420890 GATGAGGGAGAGGCGCTG 59.579 66.667 7.64 0.00 40.28 5.18
58 59 2.042537 ATGAGGGAGAGGCGCTGA 60.043 61.111 7.64 0.00 40.28 4.26
59 60 2.362329 GATGAGGGAGAGGCGCTGAC 62.362 65.000 7.64 0.00 40.28 3.51
60 61 4.200283 GAGGGAGAGGCGCTGACG 62.200 72.222 7.64 0.00 40.28 4.35
85 86 4.208632 CCTTCGGCACACTCCATC 57.791 61.111 0.00 0.00 0.00 3.51
86 87 1.811266 CCTTCGGCACACTCCATCG 60.811 63.158 0.00 0.00 0.00 3.84
87 88 2.434185 TTCGGCACACTCCATCGC 60.434 61.111 0.00 0.00 0.00 4.58
88 89 2.842394 CTTCGGCACACTCCATCGCT 62.842 60.000 0.00 0.00 0.00 4.93
89 90 2.434884 CGGCACACTCCATCGCTT 60.435 61.111 0.00 0.00 0.00 4.68
90 91 2.743752 CGGCACACTCCATCGCTTG 61.744 63.158 0.00 0.00 0.00 4.01
91 92 1.672356 GGCACACTCCATCGCTTGT 60.672 57.895 0.00 0.00 0.00 3.16
92 93 1.499056 GCACACTCCATCGCTTGTG 59.501 57.895 0.00 0.00 41.92 3.33
93 94 0.950555 GCACACTCCATCGCTTGTGA 60.951 55.000 4.79 0.00 41.61 3.58
94 95 1.730501 CACACTCCATCGCTTGTGAT 58.269 50.000 0.00 0.00 41.61 3.06
95 96 2.079158 CACACTCCATCGCTTGTGATT 58.921 47.619 0.00 0.00 41.61 2.57
96 97 2.079158 ACACTCCATCGCTTGTGATTG 58.921 47.619 0.00 0.00 34.81 2.67
97 98 2.079158 CACTCCATCGCTTGTGATTGT 58.921 47.619 0.00 0.00 32.72 2.71
98 99 2.094894 CACTCCATCGCTTGTGATTGTC 59.905 50.000 0.00 0.00 32.72 3.18
99 100 1.325640 CTCCATCGCTTGTGATTGTCG 59.674 52.381 0.00 0.00 0.00 4.35
100 101 0.247814 CCATCGCTTGTGATTGTCGC 60.248 55.000 0.00 0.00 0.00 5.19
101 102 0.723414 CATCGCTTGTGATTGTCGCT 59.277 50.000 0.00 0.00 0.00 4.93
102 103 1.926510 CATCGCTTGTGATTGTCGCTA 59.073 47.619 0.00 0.00 0.00 4.26
103 104 1.629013 TCGCTTGTGATTGTCGCTAG 58.371 50.000 0.00 0.00 33.88 3.42
104 105 0.647410 CGCTTGTGATTGTCGCTAGG 59.353 55.000 0.00 0.00 31.94 3.02
105 106 1.726853 GCTTGTGATTGTCGCTAGGT 58.273 50.000 0.00 0.00 31.94 3.08
106 107 1.394917 GCTTGTGATTGTCGCTAGGTG 59.605 52.381 0.00 0.00 31.94 4.00
107 108 2.002586 CTTGTGATTGTCGCTAGGTGG 58.997 52.381 0.00 0.00 0.00 4.61
108 109 0.973632 TGTGATTGTCGCTAGGTGGT 59.026 50.000 0.00 0.00 0.00 4.16
109 110 1.346395 TGTGATTGTCGCTAGGTGGTT 59.654 47.619 0.00 0.00 0.00 3.67
110 111 2.000447 GTGATTGTCGCTAGGTGGTTC 59.000 52.381 0.00 0.00 0.00 3.62
111 112 1.899814 TGATTGTCGCTAGGTGGTTCT 59.100 47.619 0.00 0.00 0.00 3.01
112 113 3.093814 TGATTGTCGCTAGGTGGTTCTA 58.906 45.455 0.00 0.00 0.00 2.10
113 114 3.704566 TGATTGTCGCTAGGTGGTTCTAT 59.295 43.478 0.00 0.00 0.00 1.98
114 115 3.520290 TTGTCGCTAGGTGGTTCTATG 57.480 47.619 0.00 0.00 0.00 2.23
115 116 2.730382 TGTCGCTAGGTGGTTCTATGA 58.270 47.619 0.00 0.00 0.00 2.15
116 117 3.093814 TGTCGCTAGGTGGTTCTATGAA 58.906 45.455 0.00 0.00 0.00 2.57
117 118 3.119245 TGTCGCTAGGTGGTTCTATGAAC 60.119 47.826 2.16 2.16 0.00 3.18
118 119 2.429610 TCGCTAGGTGGTTCTATGAACC 59.570 50.000 19.27 19.27 40.67 3.62
119 120 2.431057 CGCTAGGTGGTTCTATGAACCT 59.569 50.000 24.25 11.41 45.06 3.50
120 121 3.738281 CGCTAGGTGGTTCTATGAACCTG 60.738 52.174 24.25 13.23 42.96 4.00
121 122 3.451178 GCTAGGTGGTTCTATGAACCTGA 59.549 47.826 24.25 7.90 42.96 3.86
122 123 4.081087 GCTAGGTGGTTCTATGAACCTGAA 60.081 45.833 24.25 7.29 42.96 3.02
123 124 5.396884 GCTAGGTGGTTCTATGAACCTGAAT 60.397 44.000 24.25 13.38 42.96 2.57
124 125 4.848357 AGGTGGTTCTATGAACCTGAATG 58.152 43.478 24.25 0.00 41.52 2.67
125 126 4.289672 AGGTGGTTCTATGAACCTGAATGT 59.710 41.667 24.25 6.37 41.52 2.71
126 127 5.487488 AGGTGGTTCTATGAACCTGAATGTA 59.513 40.000 24.25 5.47 41.52 2.29
127 128 5.817816 GGTGGTTCTATGAACCTGAATGTAG 59.182 44.000 24.25 0.00 40.88 2.74
128 129 6.407202 GTGGTTCTATGAACCTGAATGTAGT 58.593 40.000 24.25 0.00 40.88 2.73
129 130 6.879458 GTGGTTCTATGAACCTGAATGTAGTT 59.121 38.462 24.25 0.00 40.88 2.24
130 131 7.390718 GTGGTTCTATGAACCTGAATGTAGTTT 59.609 37.037 24.25 0.00 40.88 2.66
131 132 7.606456 TGGTTCTATGAACCTGAATGTAGTTTC 59.394 37.037 24.25 0.62 40.88 2.78
132 133 7.824779 GGTTCTATGAACCTGAATGTAGTTTCT 59.175 37.037 18.93 0.00 37.34 2.52
133 134 8.660373 GTTCTATGAACCTGAATGTAGTTTCTG 58.340 37.037 0.00 0.00 0.00 3.02
134 135 7.907389 TCTATGAACCTGAATGTAGTTTCTGT 58.093 34.615 0.00 0.00 0.00 3.41
135 136 8.375506 TCTATGAACCTGAATGTAGTTTCTGTT 58.624 33.333 0.00 0.00 0.00 3.16
136 137 9.653287 CTATGAACCTGAATGTAGTTTCTGTTA 57.347 33.333 0.00 0.00 0.00 2.41
137 138 8.918202 ATGAACCTGAATGTAGTTTCTGTTAA 57.082 30.769 0.00 0.00 0.00 2.01
138 139 8.918202 TGAACCTGAATGTAGTTTCTGTTAAT 57.082 30.769 0.00 0.00 0.00 1.40
139 140 9.349713 TGAACCTGAATGTAGTTTCTGTTAATT 57.650 29.630 0.00 0.00 0.00 1.40
140 141 9.827411 GAACCTGAATGTAGTTTCTGTTAATTC 57.173 33.333 0.00 0.00 0.00 2.17
141 142 9.574516 AACCTGAATGTAGTTTCTGTTAATTCT 57.425 29.630 0.00 0.00 0.00 2.40
142 143 9.003658 ACCTGAATGTAGTTTCTGTTAATTCTG 57.996 33.333 0.00 0.00 0.00 3.02
143 144 9.219603 CCTGAATGTAGTTTCTGTTAATTCTGA 57.780 33.333 0.00 0.00 0.00 3.27
149 150 9.778741 TGTAGTTTCTGTTAATTCTGATGTTCT 57.221 29.630 0.00 0.00 0.00 3.01
152 153 9.956720 AGTTTCTGTTAATTCTGATGTTCTTTG 57.043 29.630 0.00 0.00 0.00 2.77
153 154 9.736023 GTTTCTGTTAATTCTGATGTTCTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
156 157 9.778741 TCTGTTAATTCTGATGTTCTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
157 158 9.817365 CTGTTAATTCTGATGTTCTTTGTACTG 57.183 33.333 0.00 0.00 0.00 2.74
158 159 8.289618 TGTTAATTCTGATGTTCTTTGTACTGC 58.710 33.333 0.00 0.00 0.00 4.40
159 160 5.886960 ATTCTGATGTTCTTTGTACTGCC 57.113 39.130 0.00 0.00 0.00 4.85
160 161 4.623932 TCTGATGTTCTTTGTACTGCCT 57.376 40.909 0.00 0.00 0.00 4.75
161 162 4.569943 TCTGATGTTCTTTGTACTGCCTC 58.430 43.478 0.00 0.00 0.00 4.70
162 163 3.325870 TGATGTTCTTTGTACTGCCTCG 58.674 45.455 0.00 0.00 0.00 4.63
163 164 3.006430 TGATGTTCTTTGTACTGCCTCGA 59.994 43.478 0.00 0.00 0.00 4.04
164 165 3.026630 TGTTCTTTGTACTGCCTCGAG 57.973 47.619 5.13 5.13 0.00 4.04
165 166 2.626266 TGTTCTTTGTACTGCCTCGAGA 59.374 45.455 15.71 0.00 0.00 4.04
166 167 3.246619 GTTCTTTGTACTGCCTCGAGAG 58.753 50.000 15.71 6.81 0.00 3.20
181 182 3.418047 TCGAGAGGCGATGAATATACCA 58.582 45.455 0.00 0.00 45.59 3.25
182 183 3.824443 TCGAGAGGCGATGAATATACCAA 59.176 43.478 0.00 0.00 45.59 3.67
183 184 4.462834 TCGAGAGGCGATGAATATACCAAT 59.537 41.667 0.00 0.00 45.59 3.16
184 185 5.047306 TCGAGAGGCGATGAATATACCAATT 60.047 40.000 0.00 0.00 45.59 2.32
185 186 5.639506 CGAGAGGCGATGAATATACCAATTT 59.360 40.000 0.00 0.00 44.57 1.82
186 187 6.147821 CGAGAGGCGATGAATATACCAATTTT 59.852 38.462 0.00 0.00 44.57 1.82
187 188 7.307989 CGAGAGGCGATGAATATACCAATTTTT 60.308 37.037 0.00 0.00 44.57 1.94
214 215 7.315142 TGAAAGCAAAATCATCCATGACTAAC 58.685 34.615 0.00 0.00 40.03 2.34
229 230 3.244630 TGACTAACAACGGTTGGGCTTAT 60.245 43.478 23.51 5.26 43.46 1.73
230 231 4.020396 TGACTAACAACGGTTGGGCTTATA 60.020 41.667 23.51 7.07 43.46 0.98
231 232 5.106876 ACTAACAACGGTTGGGCTTATAT 57.893 39.130 23.51 0.00 39.57 0.86
233 234 4.712122 AACAACGGTTGGGCTTATATTG 57.288 40.909 23.51 0.00 35.46 1.90
234 235 3.958018 ACAACGGTTGGGCTTATATTGA 58.042 40.909 23.51 0.00 34.12 2.57
241 244 6.180472 CGGTTGGGCTTATATTGATTAGGAT 58.820 40.000 0.00 0.00 0.00 3.24
263 266 8.313292 AGGATCATCTTACAGCTCTTCATATTC 58.687 37.037 0.00 0.00 0.00 1.75
276 279 7.282675 AGCTCTTCATATTCACATTTCTCCAAG 59.717 37.037 0.00 0.00 0.00 3.61
286 289 5.302568 TCACATTTCTCCAAGCAAGAACAAT 59.697 36.000 0.00 0.00 32.64 2.71
329 333 0.893270 TGCAACATGTTTCCCTCGGG 60.893 55.000 8.77 0.00 0.00 5.14
332 336 1.789576 AACATGTTTCCCTCGGGCCT 61.790 55.000 4.92 0.00 34.68 5.19
333 337 1.750399 CATGTTTCCCTCGGGCCTG 60.750 63.158 4.71 4.71 34.68 4.85
341 345 4.154347 CTCGGGCCTGCCTCTCAC 62.154 72.222 6.73 0.00 36.10 3.51
342 346 4.704103 TCGGGCCTGCCTCTCACT 62.704 66.667 6.73 0.00 36.10 3.41
343 347 3.710722 CGGGCCTGCCTCTCACTT 61.711 66.667 8.29 0.00 36.10 3.16
344 348 2.270527 GGGCCTGCCTCTCACTTC 59.729 66.667 8.29 0.00 36.10 3.01
345 349 2.270527 GGCCTGCCTCTCACTTCC 59.729 66.667 0.00 0.00 0.00 3.46
346 350 2.270527 GCCTGCCTCTCACTTCCC 59.729 66.667 0.00 0.00 0.00 3.97
347 351 2.297129 GCCTGCCTCTCACTTCCCT 61.297 63.158 0.00 0.00 0.00 4.20
348 352 1.904032 CCTGCCTCTCACTTCCCTC 59.096 63.158 0.00 0.00 0.00 4.30
352 356 1.305381 CCTCTCACTTCCCTCCGGT 60.305 63.158 0.00 0.00 0.00 5.28
354 358 0.900647 CTCTCACTTCCCTCCGGTGT 60.901 60.000 0.00 0.00 33.30 4.16
398 403 2.188469 CCCCGGGATTACACACGG 59.812 66.667 26.32 0.00 45.57 4.94
418 423 0.796312 CATGTGGCGACAACAGTACC 59.204 55.000 5.39 0.00 46.06 3.34
451 456 1.575244 AATGACCAGCACGATCATCG 58.425 50.000 5.22 5.22 46.93 3.84
476 481 6.261826 GCTAACTTATTCGACCCAGAGTACTA 59.738 42.308 0.00 0.00 0.00 1.82
479 484 5.589452 ACTTATTCGACCCAGAGTACTACTG 59.411 44.000 12.68 12.68 35.43 2.74
735 763 4.934942 CCGTCACCGTCACGCACA 62.935 66.667 0.00 0.00 35.87 4.57
933 972 1.515736 GTGGTACGCTCGCTGGTAC 60.516 63.158 2.38 2.38 38.58 3.34
934 973 1.972752 TGGTACGCTCGCTGGTACA 60.973 57.895 10.43 0.00 40.53 2.90
1029 1079 3.330405 TCACTGATTGATTGAAGGGGTGA 59.670 43.478 0.00 0.00 0.00 4.02
1058 1108 0.892063 GAGTGAGACTGGGAGTGGTC 59.108 60.000 0.00 0.00 0.00 4.02
1241 1302 3.549433 TACGACCCCAAGGAGCCCA 62.549 63.158 0.00 0.00 36.73 5.36
1303 1364 4.785453 GGGAGGAAGCGGCACCTG 62.785 72.222 20.12 0.00 36.57 4.00
1762 1823 3.406764 GATTAGCGGCCATGAATTCTCT 58.593 45.455 2.24 0.00 0.00 3.10
1851 1920 2.034053 TGGTGGCTTCGTTTGTGAATTC 59.966 45.455 0.00 0.00 0.00 2.17
1854 1923 1.069227 GGCTTCGTTTGTGAATTCGCT 60.069 47.619 19.21 0.00 0.00 4.93
1856 1925 3.364565 GGCTTCGTTTGTGAATTCGCTTA 60.365 43.478 19.21 5.55 0.00 3.09
1931 2004 0.530744 ACGCACATATGTCTGACGGT 59.469 50.000 5.07 0.00 0.00 4.83
2071 2144 3.151906 ACAGGTGGTGACTGGAGC 58.848 61.111 0.00 0.00 40.23 4.70
2072 2145 1.766059 ACAGGTGGTGACTGGAGCA 60.766 57.895 0.00 0.00 40.23 4.26
2073 2146 1.004080 CAGGTGGTGACTGGAGCAG 60.004 63.158 0.00 0.00 37.52 4.24
2074 2147 2.219875 AGGTGGTGACTGGAGCAGG 61.220 63.158 0.00 0.00 35.51 4.85
2075 2148 2.217038 GGTGGTGACTGGAGCAGGA 61.217 63.158 0.00 0.00 35.51 3.86
2103 2176 7.483580 AGCTAGTAGAAATAAACCAGTGACT 57.516 36.000 0.00 0.00 0.00 3.41
2151 2238 4.899616 GCGACATTTTTGTCTTTGCAAATG 59.100 37.500 13.23 7.92 40.81 2.32
2192 2279 8.531530 GTTAAAAAGACACAATTGCTACTGTTG 58.468 33.333 5.05 0.00 0.00 3.33
2253 2379 9.165035 GCCAAAATTTCCATCTGATTTTATTGA 57.835 29.630 0.00 0.00 33.15 2.57
2293 2420 6.599638 AGAGGTTGCATAAGATAACTTTCACC 59.400 38.462 0.00 0.00 37.53 4.02
2322 2449 9.705103 AATCTTTTTAATCTGGAATCATGGAGA 57.295 29.630 0.00 0.00 0.00 3.71
2336 2463 4.825422 TCATGGAGAAAGCTCAAGTACAG 58.175 43.478 0.00 0.00 43.14 2.74
2342 2469 5.703130 GGAGAAAGCTCAAGTACAGAAATGT 59.297 40.000 0.00 0.00 43.14 2.71
2488 2650 0.397941 TCTGGAAAGTGCTGGTCAGG 59.602 55.000 0.00 0.00 0.00 3.86
2670 2840 4.096231 TGGCAAGTTCATATGATGTTTCCG 59.904 41.667 6.17 0.00 0.00 4.30
2809 2982 6.107901 AGGACAGTCCTTGATATAGAATGC 57.892 41.667 17.31 0.00 46.91 3.56
3055 3228 4.395231 GGAGTATTCCCTTGGTTCTTTTCG 59.605 45.833 0.00 0.00 37.53 3.46
3137 3311 3.008835 ACAGCCATTAGTGATGTGCAT 57.991 42.857 9.79 0.00 35.59 3.96
3299 3476 2.719531 TGTTTGCCACTACCAACAGA 57.280 45.000 0.00 0.00 0.00 3.41
4305 4505 5.191727 TGGGTGATGAATGTTGTTCCTAT 57.808 39.130 0.00 0.00 0.00 2.57
4363 4563 4.159506 CGTGGATTTATTGGGGTTCAACAT 59.840 41.667 0.00 0.00 38.31 2.71
4384 4584 2.025699 TGACTGGTAAGTAATTGCCCCC 60.026 50.000 7.59 0.00 36.52 5.40
4396 4596 0.538746 TTGCCCCCGAGTTTTTCCTC 60.539 55.000 0.00 0.00 0.00 3.71
4707 4956 9.953825 CGACTCATAACTTTTATCTACAACAAC 57.046 33.333 0.00 0.00 0.00 3.32
4748 4997 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4870 5119 4.682563 TCCAGTCCTTCAGATCTCTCTTT 58.317 43.478 0.00 0.00 0.00 2.52
5480 5994 6.729690 AAAACTCCATCCTTCATTGTTTGA 57.270 33.333 0.00 0.00 0.00 2.69
5793 6310 5.846473 CGACATACGGATGTATATAGATGCG 59.154 44.000 25.46 25.46 46.64 4.73
5831 6348 1.658994 TTCGTTTTGCTCCGTCTGTT 58.341 45.000 0.00 0.00 0.00 3.16
6045 6562 5.812642 CCGTATATTGGATCTTGACATAGCC 59.187 44.000 0.00 0.00 0.00 3.93
6149 6667 8.129001 AGAAATTGGAATTATTCTTTACCCCCT 58.871 33.333 4.87 0.00 0.00 4.79
6163 6681 8.217188 TCTTTACCCCCTAAATACTGTTACAA 57.783 34.615 0.00 0.00 0.00 2.41
6164 6682 8.102676 TCTTTACCCCCTAAATACTGTTACAAC 58.897 37.037 0.00 0.00 0.00 3.32
6165 6683 4.835678 ACCCCCTAAATACTGTTACAACG 58.164 43.478 0.00 0.00 0.00 4.10
6166 6684 4.286808 ACCCCCTAAATACTGTTACAACGT 59.713 41.667 0.00 0.00 0.00 3.99
6167 6685 4.632688 CCCCCTAAATACTGTTACAACGTG 59.367 45.833 0.00 0.00 0.00 4.49
6169 6687 5.702209 CCCCTAAATACTGTTACAACGTGTT 59.298 40.000 0.00 0.00 0.00 3.32
6170 6688 6.873076 CCCCTAAATACTGTTACAACGTGTTA 59.127 38.462 0.00 0.00 0.00 2.41
6171 6689 7.148590 CCCCTAAATACTGTTACAACGTGTTAC 60.149 40.741 0.00 0.00 31.23 2.50
6360 6888 1.656818 CGGTGATGAAGGCGGCAAAT 61.657 55.000 13.08 0.52 0.00 2.32
6362 6890 1.748493 GGTGATGAAGGCGGCAAATTA 59.252 47.619 13.08 0.00 0.00 1.40
6363 6891 2.362077 GGTGATGAAGGCGGCAAATTAT 59.638 45.455 13.08 0.00 0.00 1.28
6437 6966 1.941975 TCGCAGCCAATGTGTCATATG 59.058 47.619 0.00 0.00 40.47 1.78
6505 7035 5.008415 CCTCTGTAATGGTGCTCATTCATTC 59.992 44.000 8.68 2.09 44.32 2.67
6563 7093 2.505407 TGGTCATCCCCAGATTACAGTG 59.495 50.000 0.00 0.00 29.61 3.66
6614 7147 7.613022 AGATGAATGATAGGAAAGAGCAAAACA 59.387 33.333 0.00 0.00 0.00 2.83
6643 7182 8.737168 TTCTTCATATTAGATGTTTCCACCTG 57.263 34.615 0.00 0.00 0.00 4.00
6674 7213 3.266541 TGTGTCGATTTTGTGCATGTC 57.733 42.857 0.00 0.00 0.00 3.06
6721 7260 2.306847 GGAACTTCCTGCTTTGGACAA 58.693 47.619 0.00 0.00 35.58 3.18
6725 7264 4.373156 ACTTCCTGCTTTGGACAACTAT 57.627 40.909 0.00 0.00 35.58 2.12
6737 7276 8.560374 GCTTTGGACAACTATATATGGAACTTC 58.440 37.037 2.68 0.00 0.00 3.01
6770 7309 9.507329 TTCTTACAGATTCTAGTGCAAAATTCT 57.493 29.630 0.00 0.00 0.00 2.40
6773 7312 7.608308 ACAGATTCTAGTGCAAAATTCTCTC 57.392 36.000 0.00 0.00 0.00 3.20
6774 7313 6.597280 ACAGATTCTAGTGCAAAATTCTCTCC 59.403 38.462 0.00 0.00 0.00 3.71
6775 7314 6.596888 CAGATTCTAGTGCAAAATTCTCTCCA 59.403 38.462 0.00 0.00 0.00 3.86
6776 7315 6.822676 AGATTCTAGTGCAAAATTCTCTCCAG 59.177 38.462 0.00 0.00 0.00 3.86
6777 7316 5.745312 TCTAGTGCAAAATTCTCTCCAGA 57.255 39.130 0.00 0.00 0.00 3.86
6778 7317 6.114187 TCTAGTGCAAAATTCTCTCCAGAA 57.886 37.500 0.00 0.00 43.06 3.02
6779 7318 5.934625 TCTAGTGCAAAATTCTCTCCAGAAC 59.065 40.000 0.00 0.00 41.64 3.01
6780 7319 4.723309 AGTGCAAAATTCTCTCCAGAACT 58.277 39.130 0.00 0.00 41.64 3.01
6781 7320 5.136105 AGTGCAAAATTCTCTCCAGAACTT 58.864 37.500 0.00 0.00 41.64 2.66
6782 7321 6.299141 AGTGCAAAATTCTCTCCAGAACTTA 58.701 36.000 0.00 0.00 41.64 2.24
6783 7322 6.772716 AGTGCAAAATTCTCTCCAGAACTTAA 59.227 34.615 0.00 0.00 41.64 1.85
6784 7323 6.858478 GTGCAAAATTCTCTCCAGAACTTAAC 59.142 38.462 0.00 0.00 41.64 2.01
6785 7324 6.545666 TGCAAAATTCTCTCCAGAACTTAACA 59.454 34.615 0.00 0.00 41.64 2.41
6786 7325 7.080724 GCAAAATTCTCTCCAGAACTTAACAG 58.919 38.462 0.00 0.00 41.64 3.16
6787 7326 7.255277 GCAAAATTCTCTCCAGAACTTAACAGT 60.255 37.037 0.00 0.00 41.64 3.55
6788 7327 8.624776 CAAAATTCTCTCCAGAACTTAACAGTT 58.375 33.333 0.00 0.00 46.64 3.16
6789 7328 8.753497 AAATTCTCTCCAGAACTTAACAGTTT 57.247 30.769 0.00 0.00 43.79 2.66
6790 7329 8.753497 AATTCTCTCCAGAACTTAACAGTTTT 57.247 30.769 0.00 0.00 43.79 2.43
6791 7330 8.753497 ATTCTCTCCAGAACTTAACAGTTTTT 57.247 30.769 0.00 0.00 43.79 1.94
6792 7331 7.787725 TCTCTCCAGAACTTAACAGTTTTTC 57.212 36.000 0.00 0.00 43.79 2.29
6793 7332 7.565680 TCTCTCCAGAACTTAACAGTTTTTCT 58.434 34.615 0.00 0.00 43.79 2.52
6794 7333 8.047310 TCTCTCCAGAACTTAACAGTTTTTCTT 58.953 33.333 0.00 0.00 43.79 2.52
6795 7334 7.985476 TCTCCAGAACTTAACAGTTTTTCTTG 58.015 34.615 0.00 0.00 43.79 3.02
6796 7335 6.560711 TCCAGAACTTAACAGTTTTTCTTGC 58.439 36.000 0.00 0.00 43.79 4.01
6797 7336 6.151985 TCCAGAACTTAACAGTTTTTCTTGCA 59.848 34.615 0.00 0.00 43.79 4.08
6798 7337 6.473455 CCAGAACTTAACAGTTTTTCTTGCAG 59.527 38.462 0.00 0.00 43.79 4.41
6799 7338 7.250569 CAGAACTTAACAGTTTTTCTTGCAGA 58.749 34.615 0.00 0.00 43.79 4.26
6800 7339 7.917505 CAGAACTTAACAGTTTTTCTTGCAGAT 59.082 33.333 0.00 0.00 43.79 2.90
6801 7340 8.470002 AGAACTTAACAGTTTTTCTTGCAGATT 58.530 29.630 0.00 0.00 43.79 2.40
6802 7341 8.634475 AACTTAACAGTTTTTCTTGCAGATTC 57.366 30.769 0.00 0.00 40.66 2.52
6803 7342 8.000780 ACTTAACAGTTTTTCTTGCAGATTCT 57.999 30.769 0.00 0.00 0.00 2.40
6804 7343 9.120538 ACTTAACAGTTTTTCTTGCAGATTCTA 57.879 29.630 0.00 0.00 0.00 2.10
6805 7344 9.604626 CTTAACAGTTTTTCTTGCAGATTCTAG 57.395 33.333 0.00 0.00 0.00 2.43
6806 7345 7.573968 AACAGTTTTTCTTGCAGATTCTAGT 57.426 32.000 0.00 0.00 0.00 2.57
6807 7346 6.963796 ACAGTTTTTCTTGCAGATTCTAGTG 58.036 36.000 0.00 0.00 0.00 2.74
6808 7347 5.855395 CAGTTTTTCTTGCAGATTCTAGTGC 59.145 40.000 0.00 0.00 40.29 4.40
6817 7356 6.187125 TGCAGATTCTAGTGCAAAATTCTC 57.813 37.500 3.43 0.00 46.53 2.87
6818 7357 5.942236 TGCAGATTCTAGTGCAAAATTCTCT 59.058 36.000 3.43 0.00 46.53 3.10
6819 7358 6.093219 TGCAGATTCTAGTGCAAAATTCTCTC 59.907 38.462 3.43 0.00 46.53 3.20
6851 7392 0.028770 ACGCCGTTTGTGTGTGATTG 59.971 50.000 0.00 0.00 36.02 2.67
6875 7416 1.608283 GCCCATAGACCATAGCCGAAC 60.608 57.143 0.00 0.00 0.00 3.95
6883 7424 1.768870 ACCATAGCCGAACCTGCTTAT 59.231 47.619 0.00 0.00 40.23 1.73
6910 7451 1.820519 CTGCATGGGTGTTGCTGTATT 59.179 47.619 0.00 0.00 40.77 1.89
6917 7458 6.629128 CATGGGTGTTGCTGTATTATTTGAA 58.371 36.000 0.00 0.00 0.00 2.69
6932 7473 9.533831 GTATTATTTGAACCCTCCCATGATTAT 57.466 33.333 0.00 0.00 0.00 1.28
6934 7475 8.934023 TTATTTGAACCCTCCCATGATTATAC 57.066 34.615 0.00 0.00 0.00 1.47
6991 7534 0.607489 GTGTTCTCCAGCTGCCACAT 60.607 55.000 8.66 0.00 0.00 3.21
7087 7633 1.114627 GGCCCTTGATTCCATCCAAC 58.885 55.000 0.00 0.00 0.00 3.77
7120 7667 0.883833 CTTGGCATCACAGGGTCAAC 59.116 55.000 0.00 0.00 0.00 3.18
7121 7668 0.539438 TTGGCATCACAGGGTCAACC 60.539 55.000 0.00 0.00 40.67 3.77
7132 7679 2.983592 GTCAACCCAACCCTGCGG 60.984 66.667 0.00 0.00 0.00 5.69
7138 7685 3.636231 CCAACCCTGCGGAGGACA 61.636 66.667 26.49 0.00 42.93 4.02
7146 7693 1.081892 CTGCGGAGGACAGACAAATG 58.918 55.000 0.00 0.00 37.32 2.32
7232 7779 1.967319 TTGTCCTGTGGCTGAAAGTC 58.033 50.000 0.00 0.00 40.66 3.01
7273 7864 0.959553 AGAAAGACTCGTCGCTTCCA 59.040 50.000 9.73 0.00 31.15 3.53
7296 7887 1.926511 CTTGAACGCACATCTGGGCC 61.927 60.000 0.00 0.00 42.67 5.80
7297 7888 2.359850 GAACGCACATCTGGGCCA 60.360 61.111 5.85 5.85 42.67 5.36
7298 7889 2.360350 AACGCACATCTGGGCCAG 60.360 61.111 28.01 28.01 42.67 4.85
7299 7890 3.925630 AACGCACATCTGGGCCAGG 62.926 63.158 32.23 19.93 42.67 4.45
7326 7917 1.816224 ACGCTTGTTTTTATCGGCCAT 59.184 42.857 2.24 0.00 0.00 4.40
7327 7918 2.159435 ACGCTTGTTTTTATCGGCCATC 60.159 45.455 2.24 0.00 0.00 3.51
7370 7961 2.108157 TGTGGTGACAGTGACGGC 59.892 61.111 0.00 0.00 44.46 5.68
7422 8013 0.727457 CTCACTCACGCACTCAGTCG 60.727 60.000 0.00 0.00 0.00 4.18
7430 8023 2.653115 CACTCAGTCGCAGCCTCA 59.347 61.111 0.00 0.00 0.00 3.86
7515 8108 8.050750 CAGTACGAAATCTTAATAAGCAAGTCG 58.949 37.037 11.04 11.04 0.00 4.18
7600 8193 2.067365 ATATTCCTTTTGGGGCCGAC 57.933 50.000 0.00 0.00 40.87 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.539826 ACGGGGCAAACTTTATTGTAGTATAC 59.460 38.462 0.00 0.00 43.42 1.47
12 13 6.652053 ACGGGGCAAACTTTATTGTAGTATA 58.348 36.000 0.00 0.00 32.80 1.47
13 14 5.503002 ACGGGGCAAACTTTATTGTAGTAT 58.497 37.500 0.00 0.00 32.80 2.12
14 15 4.909001 ACGGGGCAAACTTTATTGTAGTA 58.091 39.130 0.00 0.00 32.80 1.82
15 16 3.758425 ACGGGGCAAACTTTATTGTAGT 58.242 40.909 0.00 0.00 32.80 2.73
16 17 4.380128 GGAACGGGGCAAACTTTATTGTAG 60.380 45.833 0.00 0.00 32.80 2.74
17 18 3.506844 GGAACGGGGCAAACTTTATTGTA 59.493 43.478 0.00 0.00 32.80 2.41
18 19 2.297880 GGAACGGGGCAAACTTTATTGT 59.702 45.455 0.00 0.00 32.80 2.71
19 20 2.954316 GGAACGGGGCAAACTTTATTG 58.046 47.619 0.00 0.00 0.00 1.90
35 36 1.443828 GCCTCTCCCTCATCGGAAC 59.556 63.158 0.00 0.00 33.16 3.62
36 37 2.127869 CGCCTCTCCCTCATCGGAA 61.128 63.158 0.00 0.00 33.16 4.30
37 38 2.519541 CGCCTCTCCCTCATCGGA 60.520 66.667 0.00 0.00 33.16 4.55
38 39 4.292178 GCGCCTCTCCCTCATCGG 62.292 72.222 0.00 0.00 0.00 4.18
39 40 3.222855 AGCGCCTCTCCCTCATCG 61.223 66.667 2.29 0.00 0.00 3.84
40 41 2.130426 TCAGCGCCTCTCCCTCATC 61.130 63.158 2.29 0.00 0.00 2.92
41 42 2.042537 TCAGCGCCTCTCCCTCAT 60.043 61.111 2.29 0.00 0.00 2.90
42 43 3.071206 GTCAGCGCCTCTCCCTCA 61.071 66.667 2.29 0.00 0.00 3.86
43 44 4.200283 CGTCAGCGCCTCTCCCTC 62.200 72.222 2.29 0.00 0.00 4.30
69 70 2.456119 GCGATGGAGTGTGCCGAAG 61.456 63.158 0.00 0.00 0.00 3.79
70 71 2.434185 GCGATGGAGTGTGCCGAA 60.434 61.111 0.00 0.00 0.00 4.30
71 72 2.942796 AAGCGATGGAGTGTGCCGA 61.943 57.895 0.00 0.00 0.00 5.54
72 73 2.434884 AAGCGATGGAGTGTGCCG 60.435 61.111 0.00 0.00 0.00 5.69
73 74 1.672356 ACAAGCGATGGAGTGTGCC 60.672 57.895 0.00 0.00 0.00 5.01
74 75 0.950555 TCACAAGCGATGGAGTGTGC 60.951 55.000 0.00 0.00 40.91 4.57
75 76 1.730501 ATCACAAGCGATGGAGTGTG 58.269 50.000 0.00 0.00 42.18 3.82
76 77 2.079158 CAATCACAAGCGATGGAGTGT 58.921 47.619 0.00 0.00 33.84 3.55
77 78 2.079158 ACAATCACAAGCGATGGAGTG 58.921 47.619 0.00 0.00 33.43 3.51
78 79 2.350522 GACAATCACAAGCGATGGAGT 58.649 47.619 0.00 0.00 0.00 3.85
79 80 1.325640 CGACAATCACAAGCGATGGAG 59.674 52.381 0.00 0.00 0.00 3.86
80 81 1.358877 CGACAATCACAAGCGATGGA 58.641 50.000 0.00 0.00 0.00 3.41
81 82 0.247814 GCGACAATCACAAGCGATGG 60.248 55.000 0.00 0.00 0.00 3.51
82 83 0.723414 AGCGACAATCACAAGCGATG 59.277 50.000 0.00 0.00 0.00 3.84
83 84 2.196749 CTAGCGACAATCACAAGCGAT 58.803 47.619 0.00 0.00 0.00 4.58
84 85 1.629013 CTAGCGACAATCACAAGCGA 58.371 50.000 0.00 0.00 0.00 4.93
85 86 0.647410 CCTAGCGACAATCACAAGCG 59.353 55.000 0.00 0.00 0.00 4.68
86 87 1.394917 CACCTAGCGACAATCACAAGC 59.605 52.381 0.00 0.00 0.00 4.01
87 88 2.002586 CCACCTAGCGACAATCACAAG 58.997 52.381 0.00 0.00 0.00 3.16
88 89 1.346395 ACCACCTAGCGACAATCACAA 59.654 47.619 0.00 0.00 0.00 3.33
89 90 0.973632 ACCACCTAGCGACAATCACA 59.026 50.000 0.00 0.00 0.00 3.58
90 91 2.000447 GAACCACCTAGCGACAATCAC 59.000 52.381 0.00 0.00 0.00 3.06
91 92 1.899814 AGAACCACCTAGCGACAATCA 59.100 47.619 0.00 0.00 0.00 2.57
92 93 2.674796 AGAACCACCTAGCGACAATC 57.325 50.000 0.00 0.00 0.00 2.67
93 94 3.704566 TCATAGAACCACCTAGCGACAAT 59.295 43.478 0.00 0.00 0.00 2.71
94 95 3.093814 TCATAGAACCACCTAGCGACAA 58.906 45.455 0.00 0.00 0.00 3.18
95 96 2.730382 TCATAGAACCACCTAGCGACA 58.270 47.619 0.00 0.00 0.00 4.35
96 97 3.445857 GTTCATAGAACCACCTAGCGAC 58.554 50.000 0.00 0.00 0.00 5.19
97 98 2.429610 GGTTCATAGAACCACCTAGCGA 59.570 50.000 20.81 0.00 40.03 4.93
98 99 2.431057 AGGTTCATAGAACCACCTAGCG 59.569 50.000 25.72 0.00 42.69 4.26
99 100 3.451178 TCAGGTTCATAGAACCACCTAGC 59.549 47.826 25.72 2.65 42.69 3.42
100 101 5.677319 TTCAGGTTCATAGAACCACCTAG 57.323 43.478 25.72 12.78 42.69 3.02
101 102 5.487488 ACATTCAGGTTCATAGAACCACCTA 59.513 40.000 25.72 11.76 42.69 3.08
102 103 4.289672 ACATTCAGGTTCATAGAACCACCT 59.710 41.667 25.72 7.27 42.69 4.00
103 104 4.589908 ACATTCAGGTTCATAGAACCACC 58.410 43.478 25.72 5.16 42.69 4.61
104 105 6.407202 ACTACATTCAGGTTCATAGAACCAC 58.593 40.000 25.72 5.16 42.69 4.16
105 106 6.620877 ACTACATTCAGGTTCATAGAACCA 57.379 37.500 25.72 10.04 42.69 3.67
106 107 7.824779 AGAAACTACATTCAGGTTCATAGAACC 59.175 37.037 18.72 18.72 43.45 3.62
107 108 8.660373 CAGAAACTACATTCAGGTTCATAGAAC 58.340 37.037 3.93 1.37 43.45 3.01
108 109 8.375506 ACAGAAACTACATTCAGGTTCATAGAA 58.624 33.333 3.93 0.00 43.45 2.10
109 110 7.907389 ACAGAAACTACATTCAGGTTCATAGA 58.093 34.615 3.93 0.00 43.45 1.98
110 111 8.553459 AACAGAAACTACATTCAGGTTCATAG 57.447 34.615 3.93 0.00 43.45 2.23
112 113 8.918202 TTAACAGAAACTACATTCAGGTTCAT 57.082 30.769 3.93 0.00 43.45 2.57
113 114 8.918202 ATTAACAGAAACTACATTCAGGTTCA 57.082 30.769 3.93 0.00 43.45 3.18
114 115 9.827411 GAATTAACAGAAACTACATTCAGGTTC 57.173 33.333 0.00 0.00 41.69 3.62
115 116 9.574516 AGAATTAACAGAAACTACATTCAGGTT 57.425 29.630 0.00 0.00 35.07 3.50
116 117 9.003658 CAGAATTAACAGAAACTACATTCAGGT 57.996 33.333 0.00 0.00 0.00 4.00
117 118 9.219603 TCAGAATTAACAGAAACTACATTCAGG 57.780 33.333 0.00 0.00 0.00 3.86
123 124 9.778741 AGAACATCAGAATTAACAGAAACTACA 57.221 29.630 0.00 0.00 0.00 2.74
126 127 9.956720 CAAAGAACATCAGAATTAACAGAAACT 57.043 29.630 0.00 0.00 0.00 2.66
127 128 9.736023 ACAAAGAACATCAGAATTAACAGAAAC 57.264 29.630 0.00 0.00 0.00 2.78
130 131 9.778741 AGTACAAAGAACATCAGAATTAACAGA 57.221 29.630 0.00 0.00 0.00 3.41
131 132 9.817365 CAGTACAAAGAACATCAGAATTAACAG 57.183 33.333 0.00 0.00 0.00 3.16
132 133 8.289618 GCAGTACAAAGAACATCAGAATTAACA 58.710 33.333 0.00 0.00 0.00 2.41
133 134 7.750903 GGCAGTACAAAGAACATCAGAATTAAC 59.249 37.037 0.00 0.00 0.00 2.01
134 135 7.665559 AGGCAGTACAAAGAACATCAGAATTAA 59.334 33.333 0.00 0.00 0.00 1.40
135 136 7.168219 AGGCAGTACAAAGAACATCAGAATTA 58.832 34.615 0.00 0.00 0.00 1.40
136 137 6.006449 AGGCAGTACAAAGAACATCAGAATT 58.994 36.000 0.00 0.00 0.00 2.17
137 138 5.564550 AGGCAGTACAAAGAACATCAGAAT 58.435 37.500 0.00 0.00 0.00 2.40
138 139 4.973168 AGGCAGTACAAAGAACATCAGAA 58.027 39.130 0.00 0.00 0.00 3.02
139 140 4.569943 GAGGCAGTACAAAGAACATCAGA 58.430 43.478 0.00 0.00 0.00 3.27
140 141 3.369147 CGAGGCAGTACAAAGAACATCAG 59.631 47.826 0.00 0.00 0.00 2.90
141 142 3.006430 TCGAGGCAGTACAAAGAACATCA 59.994 43.478 0.00 0.00 0.00 3.07
142 143 3.585862 TCGAGGCAGTACAAAGAACATC 58.414 45.455 0.00 0.00 0.00 3.06
143 144 3.258372 TCTCGAGGCAGTACAAAGAACAT 59.742 43.478 13.56 0.00 0.00 2.71
144 145 2.626266 TCTCGAGGCAGTACAAAGAACA 59.374 45.455 13.56 0.00 0.00 3.18
145 146 3.246619 CTCTCGAGGCAGTACAAAGAAC 58.753 50.000 13.56 0.00 0.00 3.01
146 147 2.231478 CCTCTCGAGGCAGTACAAAGAA 59.769 50.000 13.56 0.00 42.44 2.52
147 148 1.819288 CCTCTCGAGGCAGTACAAAGA 59.181 52.381 13.56 0.00 42.44 2.52
148 149 2.285827 CCTCTCGAGGCAGTACAAAG 57.714 55.000 13.56 0.00 42.44 2.77
161 162 3.850122 TGGTATATTCATCGCCTCTCG 57.150 47.619 0.00 0.00 40.15 4.04
162 163 7.440523 AAAATTGGTATATTCATCGCCTCTC 57.559 36.000 0.00 0.00 0.00 3.20
163 164 7.823745 AAAAATTGGTATATTCATCGCCTCT 57.176 32.000 0.00 0.00 0.00 3.69
187 188 6.761312 AGTCATGGATGATTTTGCTTTCAAA 58.239 32.000 0.00 0.00 39.30 2.69
188 189 6.349243 AGTCATGGATGATTTTGCTTTCAA 57.651 33.333 0.00 0.00 39.30 2.69
189 190 5.988310 AGTCATGGATGATTTTGCTTTCA 57.012 34.783 0.00 0.00 39.30 2.69
190 191 7.315142 TGTTAGTCATGGATGATTTTGCTTTC 58.685 34.615 0.00 0.00 39.30 2.62
195 196 6.029607 CCGTTGTTAGTCATGGATGATTTTG 58.970 40.000 0.00 0.00 39.30 2.44
198 199 4.843728 ACCGTTGTTAGTCATGGATGATT 58.156 39.130 0.00 0.00 39.30 2.57
214 215 5.514274 AATCAATATAAGCCCAACCGTTG 57.486 39.130 4.12 4.12 0.00 4.10
229 230 9.319060 AGAGCTGTAAGATGATCCTAATCAATA 57.681 33.333 0.00 0.00 44.85 1.90
230 231 8.204903 AGAGCTGTAAGATGATCCTAATCAAT 57.795 34.615 0.00 0.00 44.85 2.57
231 232 7.609097 AGAGCTGTAAGATGATCCTAATCAA 57.391 36.000 0.00 0.00 44.85 2.57
233 234 7.665690 TGAAGAGCTGTAAGATGATCCTAATC 58.334 38.462 0.00 0.00 34.07 1.75
234 235 7.609097 TGAAGAGCTGTAAGATGATCCTAAT 57.391 36.000 0.00 0.00 34.07 1.73
241 244 7.785033 TGTGAATATGAAGAGCTGTAAGATGA 58.215 34.615 0.00 0.00 34.07 2.92
263 266 4.572985 TGTTCTTGCTTGGAGAAATGTG 57.427 40.909 0.00 0.00 35.11 3.21
276 279 6.032460 GCATTGTTCTAACGTATTGTTCTTGC 59.968 38.462 0.00 0.00 42.09 4.01
286 289 5.100259 GCTACTCTGCATTGTTCTAACGTA 58.900 41.667 0.00 0.00 0.00 3.57
329 333 2.250741 GAGGGAAGTGAGAGGCAGGC 62.251 65.000 0.00 0.00 0.00 4.85
332 336 1.984570 CGGAGGGAAGTGAGAGGCA 60.985 63.158 0.00 0.00 0.00 4.75
333 337 2.896443 CGGAGGGAAGTGAGAGGC 59.104 66.667 0.00 0.00 0.00 4.70
346 350 9.542462 TTATATTTTAGAAAGATGACACCGGAG 57.458 33.333 9.46 1.26 0.00 4.63
347 351 9.893634 TTTATATTTTAGAAAGATGACACCGGA 57.106 29.630 9.46 0.00 0.00 5.14
348 352 9.931210 GTTTATATTTTAGAAAGATGACACCGG 57.069 33.333 0.00 0.00 0.00 5.28
352 356 9.983024 TGGGGTTTATATTTTAGAAAGATGACA 57.017 29.630 0.00 0.00 0.00 3.58
354 358 9.640952 CCTGGGGTTTATATTTTAGAAAGATGA 57.359 33.333 0.00 0.00 0.00 2.92
398 403 0.165944 GTACTGTTGTCGCCACATGC 59.834 55.000 0.00 0.00 30.55 4.06
418 423 4.518211 GCTGGTCATTAGATCCCAAATCAG 59.482 45.833 0.00 0.00 0.00 2.90
451 456 4.388378 ACTCTGGGTCGAATAAGTTAGC 57.612 45.455 0.00 0.00 0.00 3.09
476 481 7.201911 GCTGGGGTTTATTATAAGATTTGCAGT 60.202 37.037 0.00 0.00 0.00 4.40
479 484 7.049799 TGCTGGGGTTTATTATAAGATTTGC 57.950 36.000 0.00 0.00 0.00 3.68
579 604 3.438781 TGTACCGGATGATGAGTTTTTGC 59.561 43.478 9.46 0.00 0.00 3.68
642 670 3.195610 GGTGGGGATGGAACTGAAAAATC 59.804 47.826 0.00 0.00 0.00 2.17
858 886 2.723464 GATCTCCCCTCCCCTCTCGG 62.723 70.000 0.00 0.00 0.00 4.63
859 887 1.228737 GATCTCCCCTCCCCTCTCG 60.229 68.421 0.00 0.00 0.00 4.04
860 888 1.157513 GGATCTCCCCTCCCCTCTC 59.842 68.421 0.00 0.00 0.00 3.20
861 889 2.784654 CGGATCTCCCCTCCCCTCT 61.785 68.421 0.00 0.00 0.00 3.69
862 890 2.203714 CGGATCTCCCCTCCCCTC 60.204 72.222 0.00 0.00 0.00 4.30
863 891 3.851184 CCGGATCTCCCCTCCCCT 61.851 72.222 0.00 0.00 0.00 4.79
893 932 4.749310 CCAGAGCAGCGCGTCCTT 62.749 66.667 8.43 0.00 0.00 3.36
933 972 1.133790 GTGGCGGTGGTACTACTACTG 59.866 57.143 9.41 7.08 38.77 2.74
934 973 1.005215 AGTGGCGGTGGTACTACTACT 59.995 52.381 9.41 6.36 29.70 2.57
935 974 1.133790 CAGTGGCGGTGGTACTACTAC 59.866 57.143 9.41 1.79 0.00 2.73
936 975 1.466856 CAGTGGCGGTGGTACTACTA 58.533 55.000 9.41 0.00 0.00 1.82
937 976 1.885163 GCAGTGGCGGTGGTACTACT 61.885 60.000 9.41 0.00 0.00 2.57
1008 1047 3.441572 GTCACCCCTTCAATCAATCAGTG 59.558 47.826 0.00 0.00 0.00 3.66
1029 1079 2.203640 TCTCACTCCACCGCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
1241 1302 3.127533 GCCAATGCCGTTCTCGCT 61.128 61.111 0.00 0.00 35.54 4.93
1762 1823 0.544357 TCTTGAAGAGGCTCCCCGAA 60.544 55.000 11.71 0.00 35.76 4.30
1791 1852 6.431198 AATACAGTAGTAACAAATTGCGGG 57.569 37.500 0.00 0.00 33.13 6.13
1931 2004 0.529773 GATGCGCGTAATCCTCCACA 60.530 55.000 8.43 0.00 0.00 4.17
1958 2031 1.895707 CCGCAGGCCAATCATCTCC 60.896 63.158 5.01 0.00 46.14 3.71
2070 2143 4.864704 ATTTCTACTAGCTAGCTCCTGC 57.135 45.455 23.26 0.00 40.05 4.85
2071 2144 7.149307 GGTTTATTTCTACTAGCTAGCTCCTG 58.851 42.308 23.26 15.02 0.00 3.86
2072 2145 6.839657 TGGTTTATTTCTACTAGCTAGCTCCT 59.160 38.462 23.26 9.98 0.00 3.69
2073 2146 7.052142 TGGTTTATTTCTACTAGCTAGCTCC 57.948 40.000 23.26 11.79 0.00 4.70
2074 2147 7.650104 CACTGGTTTATTTCTACTAGCTAGCTC 59.350 40.741 23.26 1.18 0.00 4.09
2075 2148 7.342284 TCACTGGTTTATTTCTACTAGCTAGCT 59.658 37.037 23.12 23.12 0.00 3.32
2192 2279 8.721478 TCAGAATAATTAAGCAAGTTGACAGAC 58.279 33.333 7.16 0.00 0.00 3.51
2253 2379 4.650131 GCAACCTCTACTGATACCTAGGTT 59.350 45.833 22.11 8.07 45.75 3.50
2293 2420 9.669353 CCATGATTCCAGATTAAAAAGATTACG 57.331 33.333 0.00 0.00 0.00 3.18
2322 2449 6.529220 AGAGACATTTCTGTACTTGAGCTTT 58.471 36.000 0.00 0.00 35.14 3.51
2488 2650 6.524101 TTCAAAGGCCATATTAAGTGGAAC 57.476 37.500 5.01 5.61 39.12 3.62
2809 2982 0.467290 CCCCCATGGTACCAAATCCG 60.467 60.000 20.76 5.56 0.00 4.18
3055 3228 6.721571 TTCGATCAATGAGAGTTAAACACC 57.278 37.500 0.00 0.00 0.00 4.16
3137 3311 7.520292 GCGTACAATCTTAAAAGGTGGTAAACA 60.520 37.037 0.00 0.00 0.00 2.83
3656 3855 3.864789 ATAGATGGGCAAGACGGAAAT 57.135 42.857 0.00 0.00 0.00 2.17
3974 4173 4.698780 CAGTGTCATCCATCTGTTTGTGAT 59.301 41.667 0.00 0.00 0.00 3.06
4305 4505 2.486548 GGCAGATAGTTCGGGGCATTTA 60.487 50.000 0.00 0.00 0.00 1.40
4363 4563 2.025699 GGGGGCAATTACTTACCAGTCA 60.026 50.000 0.00 0.00 34.06 3.41
4707 4956 5.004922 TGGAACTAAAGGCTTTGTTGTTG 57.995 39.130 22.32 7.79 0.00 3.33
4708 4957 5.669164 TTGGAACTAAAGGCTTTGTTGTT 57.331 34.783 22.32 20.82 0.00 2.83
4748 4997 4.331108 GAGATCTTTTGGGTTTCAGCTCT 58.669 43.478 0.00 0.00 0.00 4.09
4790 5039 2.064762 GAAGCTAGCTATCCATGTGCG 58.935 52.381 19.70 0.00 0.00 5.34
4870 5119 6.365789 CGTTTGGTAAAAGTTATGAGTCCGTA 59.634 38.462 0.00 0.00 0.00 4.02
5113 5612 4.458989 TGGCGCTTTTCAAGTGATAGAAAT 59.541 37.500 7.64 0.00 41.49 2.17
5480 5994 1.960689 ACCTAACGCTTGCAATTTGGT 59.039 42.857 10.41 10.41 0.00 3.67
5512 6026 7.547019 TCAATAGTAGAGTTCACATTGCTTCTG 59.453 37.037 0.00 0.00 0.00 3.02
5516 6030 7.615403 TCTTCAATAGTAGAGTTCACATTGCT 58.385 34.615 0.00 0.00 0.00 3.91
5770 6287 6.726230 ACGCATCTATATACATCCGTATGTC 58.274 40.000 0.00 0.00 42.92 3.06
5793 6310 6.481954 ACGAATGAATCCACACTCTAAAAC 57.518 37.500 0.00 0.00 0.00 2.43
5831 6348 7.397476 AGTCTTGTAGAGATTTCACTATGGACA 59.603 37.037 0.00 0.00 36.61 4.02
6045 6562 3.003689 AGACCAACAGTTTTTCATCGCTG 59.996 43.478 0.00 0.00 35.31 5.18
6149 6667 6.364706 CGGGTAACACGTTGTAACAGTATTTA 59.635 38.462 0.00 0.00 39.74 1.40
6163 6681 1.410153 AGTTGTTCTCGGGTAACACGT 59.590 47.619 0.57 0.00 36.61 4.49
6164 6682 1.790623 CAGTTGTTCTCGGGTAACACG 59.209 52.381 0.57 0.00 36.61 4.49
6165 6683 2.140717 CCAGTTGTTCTCGGGTAACAC 58.859 52.381 0.57 0.00 36.61 3.32
6166 6684 1.071071 CCCAGTTGTTCTCGGGTAACA 59.929 52.381 0.00 0.00 35.12 2.41
6167 6685 1.345415 TCCCAGTTGTTCTCGGGTAAC 59.655 52.381 0.00 0.00 36.53 2.50
6169 6687 1.345415 GTTCCCAGTTGTTCTCGGGTA 59.655 52.381 0.00 0.00 36.53 3.69
6170 6688 0.108019 GTTCCCAGTTGTTCTCGGGT 59.892 55.000 0.00 0.00 36.53 5.28
6171 6689 0.107831 TGTTCCCAGTTGTTCTCGGG 59.892 55.000 0.00 0.00 36.50 5.14
6257 6775 1.300465 CCCGATCAGTCTCATGGCG 60.300 63.158 0.00 0.00 0.00 5.69
6293 6811 1.027357 AAGCTTAGCCGCCAATCATG 58.973 50.000 0.00 0.00 0.00 3.07
6294 6812 1.678101 GAAAGCTTAGCCGCCAATCAT 59.322 47.619 0.00 0.00 0.00 2.45
6295 6813 1.094785 GAAAGCTTAGCCGCCAATCA 58.905 50.000 0.00 0.00 0.00 2.57
6296 6814 0.382158 GGAAAGCTTAGCCGCCAATC 59.618 55.000 0.00 0.00 0.00 2.67
6421 6950 4.729552 ATACCCATATGACACATTGGCT 57.270 40.909 3.65 0.00 0.00 4.75
6437 6966 7.298374 AGAGGGAGAAAAATGGAATTATACCC 58.702 38.462 0.00 0.00 33.67 3.69
6563 7093 7.315142 TGAAATATTGACCTTCATTTCACAGC 58.685 34.615 4.86 0.00 40.59 4.40
6643 7182 5.687285 ACAAAATCGACACAAAGAGAAATGC 59.313 36.000 0.00 0.00 0.00 3.56
6770 7309 7.415206 GCAAGAAAAACTGTTAAGTTCTGGAGA 60.415 37.037 15.05 0.00 46.15 3.71
6773 7312 6.329496 TGCAAGAAAAACTGTTAAGTTCTGG 58.671 36.000 12.17 10.93 46.15 3.86
6774 7313 7.250569 TCTGCAAGAAAAACTGTTAAGTTCTG 58.749 34.615 12.17 9.03 42.98 3.02
6775 7314 7.391148 TCTGCAAGAAAAACTGTTAAGTTCT 57.609 32.000 0.00 1.19 42.98 3.01
6794 7333 5.942236 AGAGAATTTTGCACTAGAATCTGCA 59.058 36.000 0.00 0.00 41.68 4.41
6795 7334 6.434018 AGAGAATTTTGCACTAGAATCTGC 57.566 37.500 0.00 0.00 0.00 4.26
6796 7335 6.596888 TGGAGAGAATTTTGCACTAGAATCTG 59.403 38.462 0.00 0.00 0.00 2.90
6797 7336 6.715280 TGGAGAGAATTTTGCACTAGAATCT 58.285 36.000 0.00 0.00 0.00 2.40
6798 7337 6.458070 GCTGGAGAGAATTTTGCACTAGAATC 60.458 42.308 0.00 0.00 0.00 2.52
6799 7338 5.356470 GCTGGAGAGAATTTTGCACTAGAAT 59.644 40.000 0.00 0.00 0.00 2.40
6800 7339 4.697352 GCTGGAGAGAATTTTGCACTAGAA 59.303 41.667 0.00 0.00 0.00 2.10
6801 7340 4.019860 AGCTGGAGAGAATTTTGCACTAGA 60.020 41.667 0.00 0.00 0.00 2.43
6802 7341 4.260170 AGCTGGAGAGAATTTTGCACTAG 58.740 43.478 0.00 0.00 0.00 2.57
6803 7342 4.292186 AGCTGGAGAGAATTTTGCACTA 57.708 40.909 0.00 0.00 0.00 2.74
6804 7343 3.151912 AGCTGGAGAGAATTTTGCACT 57.848 42.857 0.00 0.00 0.00 4.40
6805 7344 5.573337 AATAGCTGGAGAGAATTTTGCAC 57.427 39.130 0.00 0.00 0.00 4.57
6806 7345 6.392354 CAAAATAGCTGGAGAGAATTTTGCA 58.608 36.000 13.00 0.00 37.32 4.08
6807 7346 6.882458 CAAAATAGCTGGAGAGAATTTTGC 57.118 37.500 13.00 0.00 37.32 3.68
6808 7347 6.309737 GTGCAAAATAGCTGGAGAGAATTTTG 59.690 38.462 18.10 18.10 41.45 2.44
6809 7348 6.393171 GTGCAAAATAGCTGGAGAGAATTTT 58.607 36.000 0.00 0.00 31.47 1.82
6810 7349 5.392380 CGTGCAAAATAGCTGGAGAGAATTT 60.392 40.000 0.00 0.00 34.99 1.82
6811 7350 4.095483 CGTGCAAAATAGCTGGAGAGAATT 59.905 41.667 0.00 0.00 34.99 2.17
6812 7351 3.624861 CGTGCAAAATAGCTGGAGAGAAT 59.375 43.478 0.00 0.00 34.99 2.40
6813 7352 3.002791 CGTGCAAAATAGCTGGAGAGAA 58.997 45.455 0.00 0.00 34.99 2.87
6814 7353 2.621338 CGTGCAAAATAGCTGGAGAGA 58.379 47.619 0.00 0.00 34.99 3.10
6815 7354 1.063174 GCGTGCAAAATAGCTGGAGAG 59.937 52.381 0.00 0.00 34.99 3.20
6816 7355 1.086696 GCGTGCAAAATAGCTGGAGA 58.913 50.000 0.00 0.00 34.99 3.71
6817 7356 0.099436 GGCGTGCAAAATAGCTGGAG 59.901 55.000 0.00 0.00 34.99 3.86
6818 7357 1.643868 CGGCGTGCAAAATAGCTGGA 61.644 55.000 0.00 0.00 34.99 3.86
6819 7358 1.226379 CGGCGTGCAAAATAGCTGG 60.226 57.895 0.00 0.00 34.99 4.85
6875 7416 3.252701 CCATGCAGCTAAAGATAAGCAGG 59.747 47.826 0.00 0.00 42.62 4.85
6883 7424 2.161855 CAACACCCATGCAGCTAAAGA 58.838 47.619 0.00 0.00 0.00 2.52
6910 7451 8.287904 AGTATAATCATGGGAGGGTTCAAATA 57.712 34.615 0.00 0.00 0.00 1.40
6917 7458 7.545546 ACTAAGTAGTATAATCATGGGAGGGT 58.454 38.462 0.00 0.00 34.13 4.34
6932 7473 3.054434 TCCACCCTGCGTACTAAGTAGTA 60.054 47.826 0.00 0.00 37.73 1.82
6933 7474 2.097825 CCACCCTGCGTACTAAGTAGT 58.902 52.381 0.00 0.00 40.24 2.73
6934 7475 2.372264 TCCACCCTGCGTACTAAGTAG 58.628 52.381 0.00 0.00 0.00 2.57
6991 7534 2.506444 TGTCTTTGCTGATGATGTGCA 58.494 42.857 0.00 0.00 34.69 4.57
7087 7633 3.641437 TGCCAAGGAATGAAAGAAACG 57.359 42.857 0.00 0.00 0.00 3.60
7132 7679 4.692228 GAGGAGATCATTTGTCTGTCCTC 58.308 47.826 6.21 6.21 32.73 3.71
7138 7685 3.055530 ACTTGCGAGGAGATCATTTGTCT 60.056 43.478 5.79 0.00 0.00 3.41
7146 7693 1.671845 AGTACGACTTGCGAGGAGATC 59.328 52.381 5.79 0.00 44.57 2.75
7232 7779 0.938713 TGTTAACACCAGCGGTTTCG 59.061 50.000 3.59 0.00 31.02 3.46
7273 7864 1.436600 CAGATGTGCGTTCAAGAGCT 58.563 50.000 0.00 0.00 0.00 4.09
7326 7917 0.111061 ACAAGATTGTGCCAGCCAGA 59.889 50.000 0.00 0.00 40.49 3.86
7327 7918 0.963962 AACAAGATTGTGCCAGCCAG 59.036 50.000 0.00 0.00 41.31 4.85
7370 7961 1.840650 ATCTCCGGCCTCAGATGGG 60.841 63.158 11.56 0.00 0.00 4.00
7422 8013 2.743928 CGAACCCTGTGAGGCTGC 60.744 66.667 0.00 0.00 32.73 5.25
7430 8023 3.637273 GGTGGAGCCGAACCCTGT 61.637 66.667 0.00 0.00 0.00 4.00
7515 8108 1.463674 AACTGCAATGGACCGGATTC 58.536 50.000 9.46 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.