Multiple sequence alignment - TraesCS6D01G297400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G297400 chr6D 100.000 4129 0 0 1 4129 408652182 408648054 0.000000e+00 7625.0
1 TraesCS6D01G297400 chr6D 81.913 669 83 15 1050 1700 450820072 450820720 7.860000e-147 531.0
2 TraesCS6D01G297400 chr6D 80.233 516 47 20 2048 2541 450821046 450821528 1.840000e-88 337.0
3 TraesCS6D01G297400 chr6D 85.000 80 10 2 1985 2063 450820953 450821031 3.420000e-11 80.5
4 TraesCS6D01G297400 chr6B 93.666 4089 153 40 1 4018 613112816 613108763 0.000000e+00 6019.0
5 TraesCS6D01G297400 chr6A 94.595 2812 104 20 1251 4022 554459223 554456420 0.000000e+00 4307.0
6 TraesCS6D01G297400 chr6A 93.031 1191 37 15 1 1168 554460381 554459214 0.000000e+00 1698.0
7 TraesCS6D01G297400 chr6A 79.368 1013 137 40 2608 3590 596341704 596342674 0.000000e+00 647.0
8 TraesCS6D01G297400 chr6A 76.585 1183 166 61 2571 3700 596363645 596364769 7.800000e-152 547.0
9 TraesCS6D01G297400 chr6A 84.802 329 23 10 2268 2577 596354783 596355103 5.190000e-79 305.0
10 TraesCS6D01G297400 chr6A 78.442 552 56 30 928 1455 596340607 596341119 6.710000e-78 302.0
11 TraesCS6D01G297400 chr6A 84.912 285 18 12 2263 2530 596341417 596341693 8.800000e-67 265.0
12 TraesCS6D01G297400 chr6A 94.017 117 6 1 1486 1602 596341117 596341232 4.240000e-40 176.0
13 TraesCS6D01G297400 chr3D 80.191 944 117 44 1891 2789 335629033 335629951 0.000000e+00 643.0
14 TraesCS6D01G297400 chr3D 81.796 401 48 17 1303 1695 335628609 335628992 3.100000e-81 313.0
15 TraesCS6D01G297400 chr3D 92.500 120 9 0 3012 3131 335630309 335630428 5.490000e-39 172.0
16 TraesCS6D01G297400 chr3D 83.529 85 14 0 1785 1869 370115798 370115714 3.420000e-11 80.5
17 TraesCS6D01G297400 chr3B 79.766 939 125 39 1890 2780 434048919 434049840 4.530000e-174 621.0
18 TraesCS6D01G297400 chr3B 81.095 402 49 20 1303 1695 434048498 434048881 3.120000e-76 296.0
19 TraesCS6D01G297400 chr3B 92.373 118 9 0 3012 3129 434050243 434050360 7.100000e-38 169.0
20 TraesCS6D01G297400 chr3A 78.963 694 90 29 2139 2789 453602231 453602911 4.940000e-114 422.0
21 TraesCS6D01G297400 chr3A 81.297 401 50 17 1303 1695 453601583 453601966 6.710000e-78 302.0
22 TraesCS6D01G297400 chr3A 88.966 145 12 4 3014 3156 453603270 453603412 4.240000e-40 176.0
23 TraesCS6D01G297400 chr3A 83.529 85 14 0 1785 1869 491189510 491189426 3.420000e-11 80.5
24 TraesCS6D01G297400 chr1D 88.889 90 8 1 1784 1873 149649710 149649797 4.360000e-20 110.0
25 TraesCS6D01G297400 chr4A 89.412 85 8 1 1785 1869 99009814 99009731 5.650000e-19 106.0
26 TraesCS6D01G297400 chr4A 83.871 93 13 2 1780 1871 99009725 99009816 2.040000e-13 87.9
27 TraesCS6D01G297400 chr4A 81.720 93 15 2 1794 1886 703430590 703430500 4.430000e-10 76.8
28 TraesCS6D01G297400 chr7B 88.000 75 9 0 1785 1859 713765819 713765893 5.690000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G297400 chr6D 408648054 408652182 4128 True 7625.000000 7625 100.000000 1 4129 1 chr6D.!!$R1 4128
1 TraesCS6D01G297400 chr6D 450820072 450821528 1456 False 316.166667 531 82.382000 1050 2541 3 chr6D.!!$F1 1491
2 TraesCS6D01G297400 chr6B 613108763 613112816 4053 True 6019.000000 6019 93.666000 1 4018 1 chr6B.!!$R1 4017
3 TraesCS6D01G297400 chr6A 554456420 554460381 3961 True 3002.500000 4307 93.813000 1 4022 2 chr6A.!!$R1 4021
4 TraesCS6D01G297400 chr6A 596363645 596364769 1124 False 547.000000 547 76.585000 2571 3700 1 chr6A.!!$F2 1129
5 TraesCS6D01G297400 chr6A 596340607 596342674 2067 False 347.500000 647 84.184750 928 3590 4 chr6A.!!$F3 2662
6 TraesCS6D01G297400 chr3D 335628609 335630428 1819 False 376.000000 643 84.829000 1303 3131 3 chr3D.!!$F1 1828
7 TraesCS6D01G297400 chr3B 434048498 434050360 1862 False 362.000000 621 84.411333 1303 3129 3 chr3B.!!$F1 1826
8 TraesCS6D01G297400 chr3A 453601583 453603412 1829 False 300.000000 422 83.075333 1303 3156 3 chr3A.!!$F1 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 907 0.750546 TCCGTGCCTAGTAGACGCAT 60.751 55.0 0.0 0.0 34.51 4.73 F
1241 1388 0.591659 TCCGTGTCTCTCTGTTGTCG 59.408 55.0 0.0 0.0 0.00 4.35 F
1636 1835 0.603707 TGCTGTTGCGGAGGAAGAAG 60.604 55.0 0.0 0.0 39.56 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2838 3371 0.892755 ATGACAATGGCCAACTGCTG 59.107 50.0 10.96 5.01 40.92 4.41 R
3111 3672 0.631753 AGCTACTCCTGGGCAGTAGA 59.368 55.0 20.85 0.00 44.30 2.59 R
3624 4217 0.768221 AGGCCCTTCTCACCACTTCA 60.768 55.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 1.069935 GAGGGGATTAGAGCGCCAC 59.930 63.158 2.29 0.00 40.52 5.01
181 182 4.155733 TGGTCGGCGCCACCTATG 62.156 66.667 33.43 17.43 34.66 2.23
608 621 0.825840 GACGAGAGCTAGATGCCCCT 60.826 60.000 0.00 0.00 44.23 4.79
685 698 2.366972 ATTGGGGTCTCCGGGGAG 60.367 66.667 2.77 8.48 43.21 4.30
801 816 1.609794 GACGGGAGGGAAGAGGTGT 60.610 63.158 0.00 0.00 0.00 4.16
810 825 1.298014 GAAGAGGTGTCTGGCCCTG 59.702 63.158 0.00 0.00 31.37 4.45
819 834 0.962356 GTCTGGCCCTGTGGAATGTG 60.962 60.000 0.00 0.00 0.00 3.21
843 867 5.697473 TTCCGTAAAACATGCATGAAAGA 57.303 34.783 32.75 15.08 0.00 2.52
850 874 7.478667 CGTAAAACATGCATGAAAGAGTACTTC 59.521 37.037 32.75 9.42 35.05 3.01
858 882 5.415221 CATGAAAGAGTACTTCACCTCTCC 58.585 45.833 0.00 0.00 35.05 3.71
883 907 0.750546 TCCGTGCCTAGTAGACGCAT 60.751 55.000 0.00 0.00 34.51 4.73
916 940 3.444916 TCTCTGAACACGTGTCTCAAAC 58.555 45.455 23.61 9.83 0.00 2.93
920 944 4.452795 TCTGAACACGTGTCTCAAACAAAA 59.547 37.500 23.61 3.68 40.31 2.44
1207 1354 1.571215 CCCCCGTTCGTTTTTCTCCG 61.571 60.000 0.00 0.00 0.00 4.63
1223 1370 2.159282 TCTCCGTTCCTGCTTACGAATC 60.159 50.000 0.00 0.00 40.03 2.52
1237 1384 2.638556 CGAATCCGTGTCTCTCTGTT 57.361 50.000 0.00 0.00 0.00 3.16
1238 1385 2.254459 CGAATCCGTGTCTCTCTGTTG 58.746 52.381 0.00 0.00 0.00 3.33
1240 1387 3.246619 GAATCCGTGTCTCTCTGTTGTC 58.753 50.000 0.00 0.00 0.00 3.18
1241 1388 0.591659 TCCGTGTCTCTCTGTTGTCG 59.408 55.000 0.00 0.00 0.00 4.35
1248 1400 5.031578 GTGTCTCTCTGTTGTCGTATCATC 58.968 45.833 0.00 0.00 0.00 2.92
1268 1420 1.377994 CTAGGCCATCCCCTGATGC 59.622 63.158 5.01 0.00 45.86 3.91
1298 1450 1.028868 GCTTGAGGCCACTGATCACC 61.029 60.000 5.01 0.00 34.27 4.02
1387 1549 7.487189 GTCTCATGCAATTCAAAGGATTTACAG 59.513 37.037 0.00 0.00 35.03 2.74
1441 1607 5.335269 GCTAGAGCAGGTTTTCTTTTCTTCC 60.335 44.000 0.00 0.00 41.59 3.46
1580 1779 0.622665 AGGGCATGGAAGGTGAAGAG 59.377 55.000 0.00 0.00 0.00 2.85
1636 1835 0.603707 TGCTGTTGCGGAGGAAGAAG 60.604 55.000 0.00 0.00 39.56 2.85
1665 1864 4.531332 CTTTCTTTTGCTCTGTTCTTCGG 58.469 43.478 0.00 0.00 0.00 4.30
1774 2024 1.639298 GGACCACAGCAAGTCGATGC 61.639 60.000 2.71 2.71 46.78 3.91
1794 2044 3.637229 TGCACTGCTTACTACTCCCTATC 59.363 47.826 1.98 0.00 0.00 2.08
1828 2078 5.298276 ACAAGACGCTTTTTGATACAAAGGA 59.702 36.000 0.16 0.00 32.66 3.36
1953 2203 6.395426 ACAATATCATTTGGCACATACAGG 57.605 37.500 0.00 0.00 39.30 4.00
2130 2412 4.860907 ACTGTTATGTTATCAACGGACGAC 59.139 41.667 0.00 0.00 35.44 4.34
2131 2413 5.063180 TGTTATGTTATCAACGGACGACT 57.937 39.130 0.00 0.00 0.00 4.18
2212 2498 6.697395 ACTTTTGTTCAAACTTTGCTACCTT 58.303 32.000 0.00 0.00 0.00 3.50
2229 2515 5.124776 GCTACCTTATGTGTTGCATTTGGTA 59.875 40.000 0.00 0.00 40.16 3.25
2257 2553 7.605309 TGCAGTTATATTTAGCATGATGAGAGG 59.395 37.037 0.00 0.00 0.00 3.69
2258 2554 7.413877 GCAGTTATATTTAGCATGATGAGAGGC 60.414 40.741 0.00 0.00 0.00 4.70
2279 2575 7.494952 AGAGGCCGTATTTCTACATTTCTAAAC 59.505 37.037 0.00 0.00 0.00 2.01
2306 2602 1.188863 CCCCTGAAATTGGCCAAGAG 58.811 55.000 24.94 15.55 0.00 2.85
2512 2828 8.055279 AGTGTTCCATATGGTTATTTGACTTG 57.945 34.615 21.28 0.00 36.34 3.16
2536 2865 5.112686 AGATTTCACTCTAGGATTTCACGC 58.887 41.667 0.00 0.00 0.00 5.34
2904 3443 8.314021 AGGGAAATCCAATCAACTTAAATGAAC 58.686 33.333 1.22 0.00 38.24 3.18
2937 3481 6.706270 AGCCATACAATACGGAGTGAAAATAG 59.294 38.462 0.04 0.00 45.73 1.73
3151 3715 9.632807 GTAGCTCTCGTGAATCAAAAGATATAT 57.367 33.333 0.00 0.00 0.00 0.86
3181 3753 4.532314 TTTGTGACAATTGCATATGCCA 57.468 36.364 24.54 14.82 41.18 4.92
3205 3777 2.489971 CAAAAGCAGGTACTTCGACCA 58.510 47.619 0.00 0.00 42.47 4.02
3306 3880 8.571336 ACCAATACTTTTCTGTTCTTCTGAATG 58.429 33.333 0.00 0.00 34.79 2.67
3308 3882 9.390795 CAATACTTTTCTGTTCTTCTGAATGTG 57.609 33.333 0.00 0.00 34.79 3.21
3331 3905 1.673626 CCGTAGTTTGAAGGCGGCTTA 60.674 52.381 25.59 7.22 35.90 3.09
3383 3957 2.319136 TGTAGCGTGTCACCAAAACT 57.681 45.000 0.00 0.00 0.00 2.66
3384 3958 2.206750 TGTAGCGTGTCACCAAAACTC 58.793 47.619 0.00 0.00 0.00 3.01
3386 3960 1.583054 AGCGTGTCACCAAAACTCTC 58.417 50.000 0.00 0.00 0.00 3.20
3428 4003 2.984562 TGCATTGTGATAGCCTTTCGA 58.015 42.857 0.00 0.00 0.00 3.71
3464 4041 9.747898 TTGACCCAAAAATATCACTACAACTAT 57.252 29.630 0.00 0.00 0.00 2.12
3624 4217 1.284198 AGATGCTGATGGGCAAGAACT 59.716 47.619 0.00 0.00 45.68 3.01
3719 4320 1.830145 CCTCAATGGGTAGGGTCGG 59.170 63.158 0.00 0.00 0.00 4.79
3739 4340 1.332997 GCCATGACTAAGCATGTCAGC 59.667 52.381 11.06 7.18 45.88 4.26
3740 4341 2.635714 CCATGACTAAGCATGTCAGCA 58.364 47.619 11.06 0.00 45.88 4.41
3755 4356 7.340232 AGCATGTCAGCAAGAAAGGATAATTTA 59.660 33.333 0.00 0.00 36.85 1.40
3898 4499 3.884037 ATTCACCAAGGTTGAAGTCCT 57.116 42.857 9.05 0.00 36.81 3.85
4022 4626 9.185680 TGTTAGAGTTAGTATGATGAAGTAGCA 57.814 33.333 0.00 0.00 0.00 3.49
4055 4659 7.530426 ACATTTAATCCATTCTAGATTGGCC 57.470 36.000 23.37 0.00 35.59 5.36
4056 4660 6.494835 ACATTTAATCCATTCTAGATTGGCCC 59.505 38.462 23.37 0.00 35.59 5.80
4057 4661 3.532641 AATCCATTCTAGATTGGCCCC 57.467 47.619 23.37 0.00 32.74 5.80
4058 4662 1.905839 TCCATTCTAGATTGGCCCCA 58.094 50.000 23.37 8.31 33.17 4.96
4059 4663 1.494721 TCCATTCTAGATTGGCCCCAC 59.505 52.381 23.37 0.00 33.17 4.61
4060 4664 1.496429 CCATTCTAGATTGGCCCCACT 59.504 52.381 18.28 0.00 0.00 4.00
4061 4665 2.711009 CCATTCTAGATTGGCCCCACTA 59.289 50.000 18.28 0.00 0.00 2.74
4062 4666 3.331889 CCATTCTAGATTGGCCCCACTAT 59.668 47.826 18.28 0.00 0.00 2.12
4063 4667 4.202609 CCATTCTAGATTGGCCCCACTATT 60.203 45.833 18.28 0.00 0.00 1.73
4064 4668 5.014123 CCATTCTAGATTGGCCCCACTATTA 59.986 44.000 18.28 0.00 0.00 0.98
4065 4669 5.562298 TTCTAGATTGGCCCCACTATTAC 57.438 43.478 0.00 0.00 0.00 1.89
4066 4670 4.827789 TCTAGATTGGCCCCACTATTACT 58.172 43.478 0.00 0.00 0.00 2.24
4067 4671 5.224441 TCTAGATTGGCCCCACTATTACTT 58.776 41.667 0.00 0.00 0.00 2.24
4068 4672 4.881157 AGATTGGCCCCACTATTACTTT 57.119 40.909 0.00 0.00 0.00 2.66
4069 4673 5.206905 AGATTGGCCCCACTATTACTTTT 57.793 39.130 0.00 0.00 0.00 2.27
4070 4674 5.589831 AGATTGGCCCCACTATTACTTTTT 58.410 37.500 0.00 0.00 0.00 1.94
4098 4702 9.515226 TCCTGTTTGCTAGTAATTTTAATCACT 57.485 29.630 0.00 0.00 0.00 3.41
4128 4732 9.294030 CTTGACATTTAATTATCTTCCAAGTGC 57.706 33.333 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 0.041839 GCAACCATATTCTCGCGCTG 60.042 55.000 5.56 0.00 0.00 5.18
178 179 2.734591 GCCGTCATCCCGCTCATA 59.265 61.111 0.00 0.00 0.00 2.15
801 816 1.379916 CACATTCCACAGGGCCAGA 59.620 57.895 6.18 0.00 0.00 3.86
819 834 5.918011 TCTTTCATGCATGTTTTACGGAAAC 59.082 36.000 25.43 0.68 46.28 2.78
843 867 0.408700 ACGGGGAGAGGTGAAGTACT 59.591 55.000 0.00 0.00 0.00 2.73
883 907 1.825474 GTTCAGAGATGAGGGAACGGA 59.175 52.381 0.00 0.00 31.48 4.69
920 944 7.172361 GTGAAGCTTCTATGTTCAGACTCTTTT 59.828 37.037 26.09 0.00 30.94 2.27
924 948 4.867608 GGTGAAGCTTCTATGTTCAGACTC 59.132 45.833 26.09 4.72 30.94 3.36
926 950 4.629200 CAGGTGAAGCTTCTATGTTCAGAC 59.371 45.833 26.09 12.71 30.94 3.51
986 1022 0.250081 CTCCATCCCTAAGCTTCGGC 60.250 60.000 11.53 0.00 42.17 5.54
987 1023 0.394565 CCTCCATCCCTAAGCTTCGG 59.605 60.000 10.06 10.06 0.00 4.30
988 1024 0.394565 CCCTCCATCCCTAAGCTTCG 59.605 60.000 0.00 0.00 0.00 3.79
989 1025 0.767998 CCCCTCCATCCCTAAGCTTC 59.232 60.000 0.00 0.00 0.00 3.86
990 1026 1.356494 GCCCCTCCATCCCTAAGCTT 61.356 60.000 3.48 3.48 0.00 3.74
991 1027 1.772156 GCCCCTCCATCCCTAAGCT 60.772 63.158 0.00 0.00 0.00 3.74
992 1028 2.839836 GCCCCTCCATCCCTAAGC 59.160 66.667 0.00 0.00 0.00 3.09
1223 1370 0.311165 ACGACAACAGAGAGACACGG 59.689 55.000 0.00 0.00 0.00 4.94
1235 1382 3.181479 TGGCCTAGTGATGATACGACAAC 60.181 47.826 3.32 0.00 0.00 3.32
1237 1384 2.661718 TGGCCTAGTGATGATACGACA 58.338 47.619 3.32 0.00 0.00 4.35
1238 1385 3.367498 GGATGGCCTAGTGATGATACGAC 60.367 52.174 3.32 0.00 0.00 4.34
1240 1387 2.093973 GGGATGGCCTAGTGATGATACG 60.094 54.545 3.32 0.00 0.00 3.06
1241 1388 2.237392 GGGGATGGCCTAGTGATGATAC 59.763 54.545 3.32 0.00 0.00 2.24
1248 1400 0.399454 CATCAGGGGATGGCCTAGTG 59.601 60.000 3.32 0.00 45.84 2.74
1467 1666 6.938030 TCAACATAACCGGTCTTAATCAAGTT 59.062 34.615 8.04 0.21 33.20 2.66
1580 1779 0.387750 CTCAAGCCCTTTCGCAAAGC 60.388 55.000 3.86 0.00 37.18 3.51
1636 1835 2.816672 CAGAGCAAAAGAAAGGAGACCC 59.183 50.000 0.00 0.00 0.00 4.46
1665 1864 3.244345 TGAACAACGAGACAACGTGAATC 59.756 43.478 0.00 0.00 45.83 2.52
1705 1955 2.879233 GCGGTGAGAACAGGGGACA 61.879 63.158 0.00 0.00 0.00 4.02
1774 2024 6.943146 TGATAGATAGGGAGTAGTAAGCAGTG 59.057 42.308 0.00 0.00 0.00 3.66
1794 2044 6.690957 TCAAAAAGCGTCTTGTGTTTTGATAG 59.309 34.615 5.92 0.00 41.07 2.08
1953 2203 1.339711 CAGCATTTACTTGTTGCGGC 58.660 50.000 0.00 0.00 41.22 6.53
2130 2412 8.782144 GGAAATATATCTTCTGAAAGCTTGGAG 58.218 37.037 0.00 0.00 32.18 3.86
2131 2413 7.721399 GGGAAATATATCTTCTGAAAGCTTGGA 59.279 37.037 0.00 0.00 32.18 3.53
2229 2515 9.511272 TCTCATCATGCTAAATATAACTGCAAT 57.489 29.630 0.00 0.00 37.20 3.56
2257 2553 7.225523 TCGTTTAGAAATGTAGAAATACGGC 57.774 36.000 0.00 0.00 0.00 5.68
2279 2575 3.430236 GGCCAATTTCAGGGGTATTTTCG 60.430 47.826 0.00 0.00 0.00 3.46
2306 2602 7.169158 TGGATTCTGGGTGAAATACAAAATC 57.831 36.000 0.00 0.00 38.29 2.17
2512 2828 5.233263 GCGTGAAATCCTAGAGTGAAATCTC 59.767 44.000 0.00 0.00 34.96 2.75
2838 3371 0.892755 ATGACAATGGCCAACTGCTG 59.107 50.000 10.96 5.01 40.92 4.41
2839 3372 0.892755 CATGACAATGGCCAACTGCT 59.107 50.000 10.96 1.22 40.92 4.24
2876 3415 9.540538 TCATTTAAGTTGATTGGATTTCCCTAA 57.459 29.630 0.00 0.00 35.38 2.69
2904 3443 3.245284 CCGTATTGTATGGCTCGTTCTTG 59.755 47.826 0.00 0.00 0.00 3.02
2937 3481 9.297586 TGACGATGAATGAACTGTTATACTTAC 57.702 33.333 0.00 0.00 0.00 2.34
3111 3672 0.631753 AGCTACTCCTGGGCAGTAGA 59.368 55.000 20.85 0.00 44.30 2.59
3181 3753 2.367567 TCGAAGTACCTGCTTTTGGAGT 59.632 45.455 0.00 0.00 36.02 3.85
3306 3880 1.193874 CGCCTTCAAACTACGGAACAC 59.806 52.381 0.00 0.00 0.00 3.32
3308 3882 0.794473 CCGCCTTCAAACTACGGAAC 59.206 55.000 0.00 0.00 46.71 3.62
3383 3957 6.875972 AACAGATCCTAAAAAGGCTAGAGA 57.124 37.500 0.00 0.00 0.00 3.10
3384 3958 7.627300 GCAAAACAGATCCTAAAAAGGCTAGAG 60.627 40.741 0.00 0.00 0.00 2.43
3386 3960 6.071952 TGCAAAACAGATCCTAAAAAGGCTAG 60.072 38.462 0.00 0.00 0.00 3.42
3428 4003 5.545063 ATTTTTGGGTCAAACCTCGAATT 57.455 34.783 0.00 0.00 38.64 2.17
3491 4068 6.371809 TCTTCAAACTGTGTTGGATTGTAC 57.628 37.500 0.00 0.00 0.00 2.90
3572 4155 6.484364 TCCAGATCAACTACTGCATCAATA 57.516 37.500 0.00 0.00 33.40 1.90
3624 4217 0.768221 AGGCCCTTCTCACCACTTCA 60.768 55.000 0.00 0.00 0.00 3.02
3898 4499 9.770097 TTGTATGAGAAATAAAAATGCAACCAA 57.230 25.926 0.00 0.00 0.00 3.67
3976 4580 6.902224 AACAAACTCAATGTTTTTGGTAGC 57.098 33.333 11.76 0.00 45.69 3.58
4029 4633 9.077885 GGCCAATCTAGAATGGATTAAATGTTA 57.922 33.333 27.86 0.00 45.03 2.41
4030 4634 7.015584 GGGCCAATCTAGAATGGATTAAATGTT 59.984 37.037 27.86 0.00 45.03 2.71
4031 4635 6.494835 GGGCCAATCTAGAATGGATTAAATGT 59.505 38.462 27.86 0.00 45.03 2.71
4032 4636 6.071165 GGGGCCAATCTAGAATGGATTAAATG 60.071 42.308 27.86 2.00 45.03 2.32
4033 4637 6.019108 GGGGCCAATCTAGAATGGATTAAAT 58.981 40.000 27.86 0.00 45.03 1.40
4034 4638 5.103301 TGGGGCCAATCTAGAATGGATTAAA 60.103 40.000 27.86 8.03 45.03 1.52
4035 4639 4.418526 TGGGGCCAATCTAGAATGGATTAA 59.581 41.667 27.86 9.32 45.03 1.40
4036 4640 3.986817 TGGGGCCAATCTAGAATGGATTA 59.013 43.478 27.86 9.60 45.03 1.75
4038 4642 2.108952 GTGGGGCCAATCTAGAATGGAT 59.891 50.000 27.86 0.00 38.25 3.41
4039 4643 1.494721 GTGGGGCCAATCTAGAATGGA 59.505 52.381 27.86 6.45 39.12 3.41
4040 4644 1.496429 AGTGGGGCCAATCTAGAATGG 59.504 52.381 20.83 20.83 39.80 3.16
4041 4645 4.647564 ATAGTGGGGCCAATCTAGAATG 57.352 45.455 4.39 0.00 0.00 2.67
4042 4646 5.852250 AGTAATAGTGGGGCCAATCTAGAAT 59.148 40.000 4.39 0.00 0.00 2.40
4043 4647 5.224441 AGTAATAGTGGGGCCAATCTAGAA 58.776 41.667 4.39 0.00 0.00 2.10
4044 4648 4.827789 AGTAATAGTGGGGCCAATCTAGA 58.172 43.478 4.39 0.00 0.00 2.43
4045 4649 5.568620 AAGTAATAGTGGGGCCAATCTAG 57.431 43.478 4.39 0.00 0.00 2.43
4046 4650 5.987019 AAAGTAATAGTGGGGCCAATCTA 57.013 39.130 4.39 4.92 0.00 1.98
4047 4651 4.881157 AAAGTAATAGTGGGGCCAATCT 57.119 40.909 4.39 2.50 0.00 2.40
4048 4652 5.932619 AAAAAGTAATAGTGGGGCCAATC 57.067 39.130 4.39 0.00 0.00 2.67
4072 4676 9.515226 AGTGATTAAAATTACTAGCAAACAGGA 57.485 29.630 0.00 0.00 33.98 3.86
4102 4706 9.294030 GCACTTGGAAGATAATTAAATGTCAAG 57.706 33.333 14.27 14.27 35.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.