Multiple sequence alignment - TraesCS6D01G297100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G297100 chr6D 100.000 3961 0 0 1 3961 408212336 408216296 0.000000e+00 7315
1 TraesCS6D01G297100 chr6D 80.623 1445 231 33 1087 2501 408183262 408184687 0.000000e+00 1072
2 TraesCS6D01G297100 chr6D 75.670 448 101 8 1957 2400 420560253 420560696 2.400000e-52 217
3 TraesCS6D01G297100 chr6D 75.056 445 103 7 1960 2400 59088119 59087679 2.410000e-47 200
4 TraesCS6D01G297100 chr6B 91.108 3149 200 39 853 3960 612857123 612860232 0.000000e+00 4191
5 TraesCS6D01G297100 chr6B 80.329 1459 249 29 1087 2514 612847990 612849441 0.000000e+00 1070
6 TraesCS6D01G297100 chr6B 83.084 668 75 14 165 816 612856485 612857130 1.230000e-159 573
7 TraesCS6D01G297100 chr6B 76.577 444 98 6 1960 2400 612744209 612743769 5.120000e-59 239
8 TraesCS6D01G297100 chr6A 91.510 2497 138 29 865 3312 554302650 554305121 0.000000e+00 3369
9 TraesCS6D01G297100 chr6A 80.123 1464 240 35 1087 2520 553925990 553927432 0.000000e+00 1044
10 TraesCS6D01G297100 chr6A 88.099 605 51 13 3247 3841 554305113 554305706 0.000000e+00 699
11 TraesCS6D01G297100 chr6A 75.893 448 100 8 1957 2400 563485765 563486208 5.150000e-54 222
12 TraesCS6D01G297100 chr6A 94.574 129 7 0 749 877 553942958 553943086 2.410000e-47 200
13 TraesCS6D01G297100 chr6A 91.667 108 6 1 773 877 554302493 554302600 3.190000e-31 147
14 TraesCS6D01G297100 chr2B 73.370 721 168 24 1703 2411 405263004 405263712 3.060000e-61 246
15 TraesCS6D01G297100 chr7A 86.260 131 18 0 1087 1217 26978370 26978240 4.130000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G297100 chr6D 408212336 408216296 3960 False 7315 7315 100.000000 1 3961 1 chr6D.!!$F2 3960
1 TraesCS6D01G297100 chr6D 408183262 408184687 1425 False 1072 1072 80.623000 1087 2501 1 chr6D.!!$F1 1414
2 TraesCS6D01G297100 chr6B 612856485 612860232 3747 False 2382 4191 87.096000 165 3960 2 chr6B.!!$F2 3795
3 TraesCS6D01G297100 chr6B 612847990 612849441 1451 False 1070 1070 80.329000 1087 2514 1 chr6B.!!$F1 1427
4 TraesCS6D01G297100 chr6A 554302493 554305706 3213 False 1405 3369 90.425333 773 3841 3 chr6A.!!$F4 3068
5 TraesCS6D01G297100 chr6A 553925990 553927432 1442 False 1044 1044 80.123000 1087 2520 1 chr6A.!!$F1 1433
6 TraesCS6D01G297100 chr2B 405263004 405263712 708 False 246 246 73.370000 1703 2411 1 chr2B.!!$F1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 463 0.034896 TCTCTCCTTTGTGCCGGTTC 59.965 55.000 1.90 0.00 0.00 3.62 F
571 577 1.843851 TGCTCCCCACGGATTATCTTT 59.156 47.619 0.00 0.00 37.60 2.52 F
1597 1738 1.066858 CACTACGTGCTCCATGGAGTT 60.067 52.381 36.32 22.74 41.28 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1372 1.000019 TCCGGGATGGTCTCGAACT 60.000 57.895 0.0 0.0 44.60 3.01 R
1649 1804 1.202268 CGAGGTATCCGTTGGTCAGAC 60.202 57.143 0.0 0.0 0.00 3.51 R
3255 3450 0.037877 ACTCATGGCTTTCTGCTGCT 59.962 50.000 0.0 0.0 42.39 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.707242 TGGCGTCAACCATACAATAAAAA 57.293 34.783 0.00 0.00 33.75 1.94
23 24 5.704888 TGGCGTCAACCATACAATAAAAAG 58.295 37.500 0.00 0.00 33.75 2.27
24 25 4.561213 GGCGTCAACCATACAATAAAAAGC 59.439 41.667 0.00 0.00 0.00 3.51
25 26 4.561213 GCGTCAACCATACAATAAAAAGCC 59.439 41.667 0.00 0.00 0.00 4.35
26 27 5.621329 GCGTCAACCATACAATAAAAAGCCT 60.621 40.000 0.00 0.00 0.00 4.58
27 28 6.386654 CGTCAACCATACAATAAAAAGCCTT 58.613 36.000 0.00 0.00 0.00 4.35
28 29 6.307800 CGTCAACCATACAATAAAAAGCCTTG 59.692 38.462 0.00 0.00 0.00 3.61
29 30 6.589907 GTCAACCATACAATAAAAAGCCTTGG 59.410 38.462 0.00 0.00 0.00 3.61
30 31 6.495181 TCAACCATACAATAAAAAGCCTTGGA 59.505 34.615 0.00 0.00 0.00 3.53
31 32 6.530019 ACCATACAATAAAAAGCCTTGGAG 57.470 37.500 0.00 0.00 0.00 3.86
32 33 6.252995 ACCATACAATAAAAAGCCTTGGAGA 58.747 36.000 0.00 0.00 0.00 3.71
33 34 6.723977 ACCATACAATAAAAAGCCTTGGAGAA 59.276 34.615 0.00 0.00 0.00 2.87
34 35 7.093771 ACCATACAATAAAAAGCCTTGGAGAAG 60.094 37.037 0.00 0.00 0.00 2.85
35 36 5.139435 ACAATAAAAAGCCTTGGAGAAGC 57.861 39.130 0.00 0.00 0.00 3.86
36 37 4.588528 ACAATAAAAAGCCTTGGAGAAGCA 59.411 37.500 0.00 0.00 0.00 3.91
37 38 5.070313 ACAATAAAAAGCCTTGGAGAAGCAA 59.930 36.000 0.00 0.00 0.00 3.91
38 39 5.806654 ATAAAAAGCCTTGGAGAAGCAAA 57.193 34.783 0.00 0.00 0.00 3.68
39 40 4.694760 AAAAAGCCTTGGAGAAGCAAAT 57.305 36.364 0.00 0.00 0.00 2.32
40 41 3.672767 AAAGCCTTGGAGAAGCAAATG 57.327 42.857 0.00 0.00 0.00 2.32
41 42 2.299326 AGCCTTGGAGAAGCAAATGT 57.701 45.000 0.00 0.00 0.00 2.71
42 43 3.439857 AGCCTTGGAGAAGCAAATGTA 57.560 42.857 0.00 0.00 0.00 2.29
43 44 3.973425 AGCCTTGGAGAAGCAAATGTAT 58.027 40.909 0.00 0.00 0.00 2.29
44 45 3.698040 AGCCTTGGAGAAGCAAATGTATG 59.302 43.478 0.00 0.00 0.00 2.39
45 46 3.696051 GCCTTGGAGAAGCAAATGTATGA 59.304 43.478 0.00 0.00 0.00 2.15
46 47 4.439289 GCCTTGGAGAAGCAAATGTATGAC 60.439 45.833 0.00 0.00 0.00 3.06
47 48 4.701651 CCTTGGAGAAGCAAATGTATGACA 59.298 41.667 0.00 0.00 0.00 3.58
48 49 5.163683 CCTTGGAGAAGCAAATGTATGACAG 60.164 44.000 0.00 0.00 0.00 3.51
49 50 5.164620 TGGAGAAGCAAATGTATGACAGA 57.835 39.130 0.00 0.00 0.00 3.41
50 51 5.181009 TGGAGAAGCAAATGTATGACAGAG 58.819 41.667 0.00 0.00 0.00 3.35
51 52 4.034975 GGAGAAGCAAATGTATGACAGAGC 59.965 45.833 0.00 0.00 0.00 4.09
52 53 4.841422 AGAAGCAAATGTATGACAGAGCT 58.159 39.130 0.00 0.00 35.77 4.09
53 54 5.982356 AGAAGCAAATGTATGACAGAGCTA 58.018 37.500 0.00 0.00 34.05 3.32
54 55 6.409704 AGAAGCAAATGTATGACAGAGCTAA 58.590 36.000 0.00 0.00 34.05 3.09
55 56 7.052873 AGAAGCAAATGTATGACAGAGCTAAT 58.947 34.615 0.00 0.00 34.05 1.73
56 57 6.857777 AGCAAATGTATGACAGAGCTAATC 57.142 37.500 0.00 0.00 33.62 1.75
57 58 6.351711 AGCAAATGTATGACAGAGCTAATCA 58.648 36.000 0.00 0.00 33.62 2.57
58 59 6.996879 AGCAAATGTATGACAGAGCTAATCAT 59.003 34.615 10.67 10.67 33.62 2.45
59 60 8.152898 AGCAAATGTATGACAGAGCTAATCATA 58.847 33.333 9.07 9.07 33.62 2.15
65 66 5.343307 TGACAGAGCTAATCATACAAGCA 57.657 39.130 0.00 0.00 38.75 3.91
66 67 5.733676 TGACAGAGCTAATCATACAAGCAA 58.266 37.500 0.00 0.00 38.75 3.91
67 68 5.582269 TGACAGAGCTAATCATACAAGCAAC 59.418 40.000 0.00 0.00 38.75 4.17
68 69 5.491070 ACAGAGCTAATCATACAAGCAACA 58.509 37.500 0.00 0.00 38.75 3.33
69 70 5.352569 ACAGAGCTAATCATACAAGCAACAC 59.647 40.000 0.00 0.00 38.75 3.32
70 71 4.878397 AGAGCTAATCATACAAGCAACACC 59.122 41.667 0.00 0.00 38.75 4.16
71 72 4.848357 AGCTAATCATACAAGCAACACCT 58.152 39.130 0.00 0.00 38.75 4.00
72 73 4.878397 AGCTAATCATACAAGCAACACCTC 59.122 41.667 0.00 0.00 38.75 3.85
73 74 4.260375 GCTAATCATACAAGCAACACCTCG 60.260 45.833 0.00 0.00 36.26 4.63
74 75 1.438651 TCATACAAGCAACACCTCGC 58.561 50.000 0.00 0.00 0.00 5.03
75 76 0.447801 CATACAAGCAACACCTCGCC 59.552 55.000 0.00 0.00 0.00 5.54
76 77 0.036164 ATACAAGCAACACCTCGCCA 59.964 50.000 0.00 0.00 0.00 5.69
77 78 0.036164 TACAAGCAACACCTCGCCAT 59.964 50.000 0.00 0.00 0.00 4.40
78 79 0.036164 ACAAGCAACACCTCGCCATA 59.964 50.000 0.00 0.00 0.00 2.74
79 80 0.447801 CAAGCAACACCTCGCCATAC 59.552 55.000 0.00 0.00 0.00 2.39
80 81 0.036164 AAGCAACACCTCGCCATACA 59.964 50.000 0.00 0.00 0.00 2.29
81 82 0.036164 AGCAACACCTCGCCATACAA 59.964 50.000 0.00 0.00 0.00 2.41
82 83 1.094785 GCAACACCTCGCCATACAAT 58.905 50.000 0.00 0.00 0.00 2.71
83 84 1.064060 GCAACACCTCGCCATACAATC 59.936 52.381 0.00 0.00 0.00 2.67
84 85 2.355197 CAACACCTCGCCATACAATCA 58.645 47.619 0.00 0.00 0.00 2.57
85 86 2.746904 CAACACCTCGCCATACAATCAA 59.253 45.455 0.00 0.00 0.00 2.57
86 87 2.632377 ACACCTCGCCATACAATCAAG 58.368 47.619 0.00 0.00 0.00 3.02
87 88 2.027192 ACACCTCGCCATACAATCAAGT 60.027 45.455 0.00 0.00 0.00 3.16
88 89 3.009723 CACCTCGCCATACAATCAAGTT 58.990 45.455 0.00 0.00 0.00 2.66
89 90 3.440173 CACCTCGCCATACAATCAAGTTT 59.560 43.478 0.00 0.00 0.00 2.66
90 91 4.634004 CACCTCGCCATACAATCAAGTTTA 59.366 41.667 0.00 0.00 0.00 2.01
91 92 5.296780 CACCTCGCCATACAATCAAGTTTAT 59.703 40.000 0.00 0.00 0.00 1.40
92 93 6.481976 CACCTCGCCATACAATCAAGTTTATA 59.518 38.462 0.00 0.00 0.00 0.98
93 94 6.482308 ACCTCGCCATACAATCAAGTTTATAC 59.518 38.462 0.00 0.00 0.00 1.47
94 95 6.481976 CCTCGCCATACAATCAAGTTTATACA 59.518 38.462 0.00 0.00 0.00 2.29
95 96 7.241663 TCGCCATACAATCAAGTTTATACAC 57.758 36.000 0.00 0.00 0.00 2.90
96 97 6.019398 TCGCCATACAATCAAGTTTATACACG 60.019 38.462 0.00 0.00 0.00 4.49
97 98 6.427150 GCCATACAATCAAGTTTATACACGG 58.573 40.000 0.00 0.00 0.00 4.94
98 99 6.037830 GCCATACAATCAAGTTTATACACGGT 59.962 38.462 0.00 0.00 0.00 4.83
99 100 7.225145 GCCATACAATCAAGTTTATACACGGTA 59.775 37.037 0.00 0.00 0.00 4.02
100 101 8.545420 CCATACAATCAAGTTTATACACGGTAC 58.455 37.037 0.00 0.00 0.00 3.34
101 102 9.089601 CATACAATCAAGTTTATACACGGTACA 57.910 33.333 0.00 0.00 0.00 2.90
102 103 9.826574 ATACAATCAAGTTTATACACGGTACAT 57.173 29.630 0.00 0.00 0.00 2.29
103 104 8.193250 ACAATCAAGTTTATACACGGTACATC 57.807 34.615 0.00 0.00 0.00 3.06
104 105 7.279313 ACAATCAAGTTTATACACGGTACATCC 59.721 37.037 0.00 0.00 0.00 3.51
105 106 5.663456 TCAAGTTTATACACGGTACATCCC 58.337 41.667 0.00 0.00 0.00 3.85
106 107 5.422970 TCAAGTTTATACACGGTACATCCCT 59.577 40.000 0.00 0.00 0.00 4.20
107 108 5.945144 AGTTTATACACGGTACATCCCTT 57.055 39.130 0.00 0.00 0.00 3.95
108 109 6.303903 AGTTTATACACGGTACATCCCTTT 57.696 37.500 0.00 0.00 0.00 3.11
109 110 6.110707 AGTTTATACACGGTACATCCCTTTG 58.889 40.000 0.00 0.00 0.00 2.77
110 111 5.936187 TTATACACGGTACATCCCTTTGA 57.064 39.130 0.00 0.00 0.00 2.69
111 112 4.829872 ATACACGGTACATCCCTTTGAA 57.170 40.909 0.00 0.00 0.00 2.69
112 113 3.713826 ACACGGTACATCCCTTTGAAT 57.286 42.857 0.00 0.00 0.00 2.57
113 114 3.343617 ACACGGTACATCCCTTTGAATG 58.656 45.455 0.00 0.00 0.00 2.67
114 115 3.244770 ACACGGTACATCCCTTTGAATGT 60.245 43.478 0.00 0.00 0.00 2.71
115 116 3.756434 CACGGTACATCCCTTTGAATGTT 59.244 43.478 0.00 0.00 0.00 2.71
116 117 4.217550 CACGGTACATCCCTTTGAATGTTT 59.782 41.667 0.00 0.00 0.00 2.83
117 118 4.830600 ACGGTACATCCCTTTGAATGTTTT 59.169 37.500 0.00 0.00 0.00 2.43
118 119 5.303333 ACGGTACATCCCTTTGAATGTTTTT 59.697 36.000 0.00 0.00 0.00 1.94
119 120 5.633182 CGGTACATCCCTTTGAATGTTTTTG 59.367 40.000 0.00 0.00 0.00 2.44
120 121 5.408299 GGTACATCCCTTTGAATGTTTTTGC 59.592 40.000 0.00 0.00 0.00 3.68
121 122 5.294734 ACATCCCTTTGAATGTTTTTGCT 57.705 34.783 0.00 0.00 0.00 3.91
122 123 5.683681 ACATCCCTTTGAATGTTTTTGCTT 58.316 33.333 0.00 0.00 0.00 3.91
123 124 5.528320 ACATCCCTTTGAATGTTTTTGCTTG 59.472 36.000 0.00 0.00 0.00 4.01
124 125 5.350504 TCCCTTTGAATGTTTTTGCTTGA 57.649 34.783 0.00 0.00 0.00 3.02
125 126 5.115480 TCCCTTTGAATGTTTTTGCTTGAC 58.885 37.500 0.00 0.00 0.00 3.18
126 127 4.874966 CCCTTTGAATGTTTTTGCTTGACA 59.125 37.500 0.00 0.00 0.00 3.58
127 128 5.528320 CCCTTTGAATGTTTTTGCTTGACAT 59.472 36.000 0.00 0.00 35.65 3.06
128 129 6.038492 CCCTTTGAATGTTTTTGCTTGACATT 59.962 34.615 1.00 1.00 44.25 2.71
132 133 4.961438 ATGTTTTTGCTTGACATTCCCT 57.039 36.364 0.00 0.00 30.22 4.20
133 134 4.320608 TGTTTTTGCTTGACATTCCCTC 57.679 40.909 0.00 0.00 0.00 4.30
134 135 3.960102 TGTTTTTGCTTGACATTCCCTCT 59.040 39.130 0.00 0.00 0.00 3.69
135 136 5.136828 TGTTTTTGCTTGACATTCCCTCTA 58.863 37.500 0.00 0.00 0.00 2.43
136 137 5.596361 TGTTTTTGCTTGACATTCCCTCTAA 59.404 36.000 0.00 0.00 0.00 2.10
137 138 6.097554 TGTTTTTGCTTGACATTCCCTCTAAA 59.902 34.615 0.00 0.00 0.00 1.85
138 139 6.916360 TTTTGCTTGACATTCCCTCTAAAT 57.084 33.333 0.00 0.00 0.00 1.40
139 140 6.916360 TTTGCTTGACATTCCCTCTAAATT 57.084 33.333 0.00 0.00 0.00 1.82
140 141 6.515272 TTGCTTGACATTCCCTCTAAATTC 57.485 37.500 0.00 0.00 0.00 2.17
141 142 5.569355 TGCTTGACATTCCCTCTAAATTCA 58.431 37.500 0.00 0.00 0.00 2.57
142 143 5.415701 TGCTTGACATTCCCTCTAAATTCAC 59.584 40.000 0.00 0.00 0.00 3.18
143 144 5.649831 GCTTGACATTCCCTCTAAATTCACT 59.350 40.000 0.00 0.00 0.00 3.41
144 145 6.823689 GCTTGACATTCCCTCTAAATTCACTA 59.176 38.462 0.00 0.00 0.00 2.74
145 146 7.336931 GCTTGACATTCCCTCTAAATTCACTAA 59.663 37.037 0.00 0.00 0.00 2.24
146 147 9.401058 CTTGACATTCCCTCTAAATTCACTAAT 57.599 33.333 0.00 0.00 0.00 1.73
182 183 7.918562 TGCGGGAAAATTCACTAATAATTAAGC 59.081 33.333 0.00 0.00 0.00 3.09
208 209 7.220300 CGGTGTATAAGACATAGTTTCAGTGAC 59.780 40.741 0.00 0.00 41.14 3.67
210 211 9.587772 GTGTATAAGACATAGTTTCAGTGACAT 57.412 33.333 0.00 0.00 41.14 3.06
230 231 6.044512 ACATTTTTGTACTTCGACTGTGAC 57.955 37.500 0.00 0.00 0.00 3.67
235 236 2.888414 TGTACTTCGACTGTGACCATCA 59.112 45.455 0.00 0.00 0.00 3.07
323 324 7.597288 ATTTTCCAGGGTTTTATGCCTATAC 57.403 36.000 0.00 0.00 0.00 1.47
324 325 5.987019 TTCCAGGGTTTTATGCCTATACT 57.013 39.130 0.00 0.00 0.00 2.12
325 326 7.454553 TTTCCAGGGTTTTATGCCTATACTA 57.545 36.000 0.00 0.00 0.00 1.82
326 327 6.681729 TCCAGGGTTTTATGCCTATACTAG 57.318 41.667 0.00 0.00 0.00 2.57
327 328 6.148186 TCCAGGGTTTTATGCCTATACTAGT 58.852 40.000 0.00 0.00 0.00 2.57
329 330 5.701290 CAGGGTTTTATGCCTATACTAGTGC 59.299 44.000 5.39 0.18 0.00 4.40
331 332 6.044404 AGGGTTTTATGCCTATACTAGTGCAT 59.956 38.462 18.92 18.92 41.87 3.96
333 334 7.230712 GGGTTTTATGCCTATACTAGTGCATTT 59.769 37.037 19.82 4.49 40.58 2.32
334 335 8.630037 GGTTTTATGCCTATACTAGTGCATTTT 58.370 33.333 19.82 3.88 40.58 1.82
335 336 9.665264 GTTTTATGCCTATACTAGTGCATTTTC 57.335 33.333 19.82 8.24 40.58 2.29
357 363 9.507329 TTTTCAGAGTCATTTATCAAAGCTAGT 57.493 29.630 0.00 0.00 0.00 2.57
360 366 8.749354 TCAGAGTCATTTATCAAAGCTAGTACA 58.251 33.333 0.00 0.00 0.00 2.90
362 368 9.757227 AGAGTCATTTATCAAAGCTAGTACATC 57.243 33.333 0.00 0.00 0.00 3.06
363 369 9.757227 GAGTCATTTATCAAAGCTAGTACATCT 57.243 33.333 0.00 0.00 0.00 2.90
404 410 5.063817 GCCCAAAACATGCATCACTTATTTC 59.936 40.000 0.00 0.00 0.00 2.17
410 416 6.199937 ACATGCATCACTTATTTCTGAACC 57.800 37.500 0.00 0.00 0.00 3.62
411 417 5.711506 ACATGCATCACTTATTTCTGAACCA 59.288 36.000 0.00 0.00 0.00 3.67
415 421 5.163713 GCATCACTTATTTCTGAACCAGGAC 60.164 44.000 0.00 0.00 31.51 3.85
423 429 4.411256 TTCTGAACCAGGACGTAACTTT 57.589 40.909 0.00 0.00 31.51 2.66
428 434 3.782656 ACCAGGACGTAACTTTCCATT 57.217 42.857 0.00 0.00 33.92 3.16
429 435 4.895668 ACCAGGACGTAACTTTCCATTA 57.104 40.909 0.00 0.00 33.92 1.90
430 436 5.431179 ACCAGGACGTAACTTTCCATTAT 57.569 39.130 0.00 0.00 33.92 1.28
431 437 5.812286 ACCAGGACGTAACTTTCCATTATT 58.188 37.500 0.00 0.00 33.92 1.40
432 438 6.949715 ACCAGGACGTAACTTTCCATTATTA 58.050 36.000 0.00 0.00 33.92 0.98
433 439 7.571025 ACCAGGACGTAACTTTCCATTATTAT 58.429 34.615 0.00 0.00 33.92 1.28
434 440 8.707449 ACCAGGACGTAACTTTCCATTATTATA 58.293 33.333 0.00 0.00 33.92 0.98
457 463 0.034896 TCTCTCCTTTGTGCCGGTTC 59.965 55.000 1.90 0.00 0.00 3.62
465 471 3.047877 GTGCCGGTTCTTCCCACG 61.048 66.667 1.90 0.00 0.00 4.94
478 484 3.767673 TCTTCCCACGTGTCTAGCTTAAT 59.232 43.478 15.65 0.00 0.00 1.40
479 485 3.520290 TCCCACGTGTCTAGCTTAATG 57.480 47.619 15.65 0.00 0.00 1.90
490 496 8.747666 CGTGTCTAGCTTAATGAGAAGATAAAC 58.252 37.037 0.00 0.00 27.49 2.01
496 502 7.051000 AGCTTAATGAGAAGATAAACCTGGTC 58.949 38.462 0.00 0.00 0.00 4.02
497 503 6.261158 GCTTAATGAGAAGATAAACCTGGTCC 59.739 42.308 0.00 0.00 0.00 4.46
499 505 2.500098 TGAGAAGATAAACCTGGTCCCG 59.500 50.000 0.00 0.00 0.00 5.14
500 506 2.500504 GAGAAGATAAACCTGGTCCCGT 59.499 50.000 0.00 0.00 0.00 5.28
535 541 8.885494 TTTTTGTCAGGAACATAATTGGAAAG 57.115 30.769 0.00 0.00 37.82 2.62
542 548 6.209391 CAGGAACATAATTGGAAAGGTGAGTT 59.791 38.462 0.00 0.00 0.00 3.01
543 549 6.782494 AGGAACATAATTGGAAAGGTGAGTTT 59.218 34.615 0.00 0.00 0.00 2.66
555 561 7.715249 TGGAAAGGTGAGTTTGTATATATGCTC 59.285 37.037 2.37 0.00 0.00 4.26
560 566 5.701290 GTGAGTTTGTATATATGCTCCCCAC 59.299 44.000 2.37 1.65 0.00 4.61
564 570 3.719871 TGTATATATGCTCCCCACGGAT 58.280 45.455 2.37 0.00 37.60 4.18
571 577 1.843851 TGCTCCCCACGGATTATCTTT 59.156 47.619 0.00 0.00 37.60 2.52
576 582 5.681639 CTCCCCACGGATTATCTTTTTAGT 58.318 41.667 0.00 0.00 37.60 2.24
580 586 8.108364 TCCCCACGGATTATCTTTTTAGTTTTA 58.892 33.333 0.00 0.00 31.13 1.52
581 587 8.403236 CCCCACGGATTATCTTTTTAGTTTTAG 58.597 37.037 0.00 0.00 0.00 1.85
607 613 6.071616 TCCAACTTATAAGTTTTCACATGGCC 60.072 38.462 24.99 0.00 46.52 5.36
608 614 6.295011 CCAACTTATAAGTTTTCACATGGCCA 60.295 38.462 24.99 8.56 46.52 5.36
624 630 3.127099 CCAGCAGATGGCATCCATT 57.873 52.632 23.33 6.63 45.26 3.16
625 631 2.281539 CCAGCAGATGGCATCCATTA 57.718 50.000 23.33 0.00 45.26 1.90
626 632 2.803956 CCAGCAGATGGCATCCATTAT 58.196 47.619 23.33 1.86 45.26 1.28
627 633 2.753452 CCAGCAGATGGCATCCATTATC 59.247 50.000 23.33 6.94 45.26 1.75
629 635 3.440522 CAGCAGATGGCATCCATTATCTG 59.559 47.826 23.33 14.82 45.26 2.90
633 639 5.884232 GCAGATGGCATCCATTATCTGAATA 59.116 40.000 23.33 0.00 45.26 1.75
634 640 6.546403 GCAGATGGCATCCATTATCTGAATAT 59.454 38.462 23.33 0.00 45.26 1.28
635 641 7.255173 GCAGATGGCATCCATTATCTGAATATC 60.255 40.741 23.33 0.00 45.26 1.63
657 673 6.912203 TCAAATGAAATTTATGCATGCTGG 57.088 33.333 20.33 0.00 46.64 4.85
663 679 4.612264 AATTTATGCATGCTGGGGAATC 57.388 40.909 20.33 0.00 0.00 2.52
665 681 2.984435 TATGCATGCTGGGGAATCAT 57.016 45.000 20.33 2.82 0.00 2.45
673 689 3.293337 TGCTGGGGAATCATCTGAAATG 58.707 45.455 0.00 0.00 0.00 2.32
684 700 5.101648 TCATCTGAAATGGCAGACACATA 57.898 39.130 0.00 0.00 46.72 2.29
685 701 5.121105 TCATCTGAAATGGCAGACACATAG 58.879 41.667 0.00 0.00 46.72 2.23
686 702 4.824479 TCTGAAATGGCAGACACATAGA 57.176 40.909 0.00 0.00 39.84 1.98
702 718 5.149273 CACATAGACAGCAACAACACAATC 58.851 41.667 0.00 0.00 0.00 2.67
709 725 4.093261 ACAGCAACAACACAATCAAAAAGC 59.907 37.500 0.00 0.00 0.00 3.51
715 731 6.121613 ACAACACAATCAAAAAGCAAATGG 57.878 33.333 0.00 0.00 0.00 3.16
717 733 6.820656 ACAACACAATCAAAAAGCAAATGGTA 59.179 30.769 0.00 0.00 0.00 3.25
719 735 8.344098 CAACACAATCAAAAAGCAAATGGTAAT 58.656 29.630 0.00 0.00 0.00 1.89
721 737 9.553064 ACACAATCAAAAAGCAAATGGTAATTA 57.447 25.926 0.00 0.00 0.00 1.40
723 739 9.777297 ACAATCAAAAAGCAAATGGTAATTAGT 57.223 25.926 0.00 0.00 0.00 2.24
726 742 8.825667 TCAAAAAGCAAATGGTAATTAGTTCC 57.174 30.769 0.00 0.00 0.00 3.62
727 743 8.424918 TCAAAAAGCAAATGGTAATTAGTTCCA 58.575 29.630 0.00 0.00 35.64 3.53
728 744 9.218440 CAAAAAGCAAATGGTAATTAGTTCCAT 57.782 29.630 1.19 1.19 42.82 3.41
729 745 9.435688 AAAAAGCAAATGGTAATTAGTTCCATC 57.564 29.630 6.56 0.00 40.52 3.51
737 753 6.736581 TGGTAATTAGTTCCATCCAATCCAA 58.263 36.000 0.00 0.00 0.00 3.53
746 762 5.449297 TCCATCCAATCCAAGTGACAATA 57.551 39.130 0.00 0.00 0.00 1.90
747 763 5.192927 TCCATCCAATCCAAGTGACAATAC 58.807 41.667 0.00 0.00 0.00 1.89
828 847 5.649557 TGCATTATGCTGAATTAACCACAC 58.350 37.500 18.44 0.00 45.31 3.82
833 852 2.824936 TGCTGAATTAACCACACCCATG 59.175 45.455 0.00 0.00 0.00 3.66
846 865 4.567537 CCACACCCATGTCTTTATCTTCCA 60.568 45.833 0.00 0.00 36.72 3.53
851 870 4.079787 CCCATGTCTTTATCTTCCAAGGGA 60.080 45.833 0.00 0.00 36.40 4.20
867 948 7.256494 TCCAAGGGAATTATGCTTTTCAAAT 57.744 32.000 0.00 0.00 0.00 2.32
869 950 8.162746 TCCAAGGGAATTATGCTTTTCAAATTT 58.837 29.630 0.00 0.00 0.00 1.82
892 973 2.752903 GTTTGATGGGCGTATCAGGTTT 59.247 45.455 3.77 0.00 38.25 3.27
899 982 2.094234 GGGCGTATCAGGTTTGCATTTT 60.094 45.455 0.00 0.00 0.00 1.82
945 1028 5.531659 TCTTCAGTCCTCACGGAATACTATC 59.468 44.000 0.00 0.00 42.08 2.08
981 1072 8.436778 TGGCCAACTTATATGTTGACATATACT 58.563 33.333 25.36 8.28 45.98 2.12
982 1073 8.721478 GGCCAACTTATATGTTGACATATACTG 58.279 37.037 25.36 16.49 45.98 2.74
983 1074 9.273016 GCCAACTTATATGTTGACATATACTGT 57.727 33.333 25.36 16.94 45.98 3.55
1000 1091 4.749245 ACTGTAAAATCAAGAACGGCTG 57.251 40.909 0.00 0.00 0.00 4.85
1055 1149 1.877443 GCCACGACACATAAACCTTGT 59.123 47.619 0.00 0.00 0.00 3.16
1060 1154 3.244284 ACGACACATAAACCTTGTAGCCA 60.244 43.478 0.00 0.00 0.00 4.75
1169 1280 3.640407 GTGCTGCACTCCAGGGGA 61.640 66.667 24.68 0.00 42.03 4.81
1261 1372 3.744719 CGGCCTCGACGACTTCCA 61.745 66.667 0.00 0.00 35.20 3.53
1343 1460 3.044305 GCGCTCTGCACGTCCTTT 61.044 61.111 0.00 0.00 45.45 3.11
1576 1702 1.202770 GCCACTCAAAGGTACCACACT 60.203 52.381 15.94 0.00 0.00 3.55
1578 1704 2.104111 CCACTCAAAGGTACCACACTCA 59.896 50.000 15.94 0.00 0.00 3.41
1597 1738 1.066858 CACTACGTGCTCCATGGAGTT 60.067 52.381 36.32 22.74 41.28 3.01
1604 1753 2.421424 GTGCTCCATGGAGTTTGTGATC 59.579 50.000 36.32 20.74 43.70 2.92
1606 1755 2.283298 CTCCATGGAGTTTGTGATCGG 58.717 52.381 30.55 4.24 37.47 4.18
1623 1778 3.691049 TCGGCTGCAAATTATAACTGC 57.309 42.857 12.44 12.44 36.60 4.40
1683 1838 4.538283 CTCGACACGGCGCTCGAT 62.538 66.667 24.69 11.22 42.43 3.59
2265 2429 1.005630 GCTGTTCCTGACGCACTCT 60.006 57.895 0.00 0.00 0.00 3.24
2498 2662 0.909610 ATGTGGAAGGAGAAGGCCGA 60.910 55.000 0.00 0.00 0.00 5.54
2603 2767 2.844122 AGCTGAAAACGTTGTTGTCC 57.156 45.000 0.00 0.00 0.00 4.02
2677 2841 5.445964 ACAGTATGATGTAACCATTTCCCC 58.554 41.667 0.00 0.00 39.69 4.81
2720 2913 5.698089 CGTCCATATCAACAGTATGCAAGAT 59.302 40.000 0.00 0.00 42.53 2.40
2730 2923 7.770433 TCAACAGTATGCAAGATAAACTATGCT 59.230 33.333 0.00 0.00 42.53 3.79
2736 2929 9.261180 GTATGCAAGATAAACTATGCTTCTACA 57.739 33.333 0.00 0.00 39.49 2.74
2754 2947 3.078594 ACAATGTTGTTTTCTCGGTGC 57.921 42.857 0.00 0.00 38.47 5.01
2763 2958 3.248266 GTTTTCTCGGTGCTGTACGTAT 58.752 45.455 0.00 0.00 0.00 3.06
2771 2966 2.093152 GGTGCTGTACGTATTTTCACCG 59.907 50.000 17.31 0.00 34.08 4.94
2775 2970 3.841643 CTGTACGTATTTTCACCGGTCT 58.158 45.455 2.59 0.00 0.00 3.85
2777 2972 4.630111 TGTACGTATTTTCACCGGTCTTT 58.370 39.130 2.59 0.00 0.00 2.52
2806 3001 8.553459 AAGAACATTTGTCTATCCTGTAACAG 57.447 34.615 0.00 0.00 0.00 3.16
2807 3002 7.680730 AGAACATTTGTCTATCCTGTAACAGT 58.319 34.615 0.00 0.00 0.00 3.55
2808 3003 8.812972 AGAACATTTGTCTATCCTGTAACAGTA 58.187 33.333 0.00 0.00 0.00 2.74
2809 3004 9.431887 GAACATTTGTCTATCCTGTAACAGTAA 57.568 33.333 0.00 0.00 0.00 2.24
2810 3005 9.959721 AACATTTGTCTATCCTGTAACAGTAAT 57.040 29.630 0.00 0.00 0.00 1.89
2825 3020 3.099362 CAGTAATAGTGTCGAGTGTCGC 58.901 50.000 0.00 0.00 40.21 5.19
2835 3030 0.934496 CGAGTGTCGCAGGAACAAAA 59.066 50.000 0.00 0.00 31.14 2.44
2836 3031 1.070577 CGAGTGTCGCAGGAACAAAAG 60.071 52.381 0.00 0.00 31.14 2.27
2839 3034 2.354821 AGTGTCGCAGGAACAAAAGAAC 59.645 45.455 0.00 0.00 0.00 3.01
2841 3036 2.096819 TGTCGCAGGAACAAAAGAACAC 59.903 45.455 0.00 0.00 0.00 3.32
2842 3037 1.673920 TCGCAGGAACAAAAGAACACC 59.326 47.619 0.00 0.00 0.00 4.16
2850 3045 6.863126 CAGGAACAAAAGAACACCATTCATAC 59.137 38.462 0.00 0.00 0.00 2.39
2851 3046 6.777580 AGGAACAAAAGAACACCATTCATACT 59.222 34.615 0.00 0.00 0.00 2.12
2876 3071 5.175491 CGTAGACATAGAGAAGACGACTACC 59.825 48.000 0.00 0.00 0.00 3.18
2882 3077 2.085320 GAGAAGACGACTACCAGCAGA 58.915 52.381 0.00 0.00 0.00 4.26
2883 3078 2.088423 AGAAGACGACTACCAGCAGAG 58.912 52.381 0.00 0.00 0.00 3.35
2884 3079 0.528470 AAGACGACTACCAGCAGAGC 59.472 55.000 0.00 0.00 0.00 4.09
2929 3124 3.365868 CGAATTCCATTTTCTGGCGTGAA 60.366 43.478 0.00 0.00 45.52 3.18
2930 3125 4.555262 GAATTCCATTTTCTGGCGTGAAA 58.445 39.130 0.00 2.10 45.52 2.69
3140 3335 2.140065 TCAGTTCAGCGAGTCAGTTG 57.860 50.000 0.00 0.00 0.00 3.16
3218 3413 0.324943 TGTTTGTAGCCTCAGCCTCC 59.675 55.000 0.00 0.00 41.25 4.30
3220 3415 1.899437 TTTGTAGCCTCAGCCTCCGG 61.899 60.000 0.00 0.00 41.25 5.14
3242 3437 3.185246 ACTGTCTGAGTTGGTTGTGAG 57.815 47.619 0.00 0.00 0.00 3.51
3255 3450 3.278574 GGTTGTGAGCCTGCAACATATA 58.721 45.455 14.09 0.00 44.70 0.86
3256 3451 3.313526 GGTTGTGAGCCTGCAACATATAG 59.686 47.826 14.09 0.00 44.70 1.31
3267 3462 3.065786 TGCAACATATAGCAGCAGAAAGC 59.934 43.478 0.00 0.00 46.19 3.51
3280 3475 4.773323 GCAGAAAGCCATGAGTTTACTT 57.227 40.909 0.00 0.00 37.23 2.24
3288 3483 6.319141 AGCCATGAGTTTACTTCAAAGTTC 57.681 37.500 0.00 0.00 40.37 3.01
3296 3546 8.836413 TGAGTTTACTTCAAAGTTCGATCAAAT 58.164 29.630 0.00 0.00 40.37 2.32
3346 3596 7.970614 TCGACATATGAATAGCATGAGTATGAC 59.029 37.037 10.38 0.00 37.87 3.06
3359 3609 4.797471 TGAGTATGACAACAGCAAAATGC 58.203 39.130 0.00 0.00 45.46 3.56
3495 3746 1.377333 CCTGGAAAGAACCCTCGGC 60.377 63.158 0.00 0.00 0.00 5.54
3639 3890 2.432510 GGCCATACTGCTGAGAGTAGTT 59.567 50.000 0.00 0.00 37.96 2.24
3671 3922 5.991933 TTGATTGTAAAAGGCCTGCATAA 57.008 34.783 5.69 0.00 0.00 1.90
3709 3960 6.486253 TGCATGAATTCAGTCAGTTCTAAC 57.514 37.500 14.54 0.00 0.00 2.34
3844 4103 7.288810 TGAAGATTGCTGGTATTCAAACTTT 57.711 32.000 0.00 0.00 36.09 2.66
3845 4104 7.370383 TGAAGATTGCTGGTATTCAAACTTTC 58.630 34.615 0.00 0.00 36.09 2.62
3864 4123 8.541899 AACTTTCAAAATTAAGGGGTGACTAA 57.458 30.769 0.00 0.00 0.00 2.24
3914 4173 5.589855 CACTCATACAGTGCAATTTCCCATA 59.410 40.000 0.00 0.00 46.30 2.74
3915 4174 5.590259 ACTCATACAGTGCAATTTCCCATAC 59.410 40.000 0.00 0.00 32.26 2.39
3916 4175 5.754782 TCATACAGTGCAATTTCCCATACT 58.245 37.500 0.00 0.00 0.00 2.12
3917 4176 6.186957 TCATACAGTGCAATTTCCCATACTT 58.813 36.000 0.00 0.00 0.00 2.24
3918 4177 6.318648 TCATACAGTGCAATTTCCCATACTTC 59.681 38.462 0.00 0.00 0.00 3.01
3919 4178 4.666512 ACAGTGCAATTTCCCATACTTCT 58.333 39.130 0.00 0.00 0.00 2.85
3920 4179 5.815581 ACAGTGCAATTTCCCATACTTCTA 58.184 37.500 0.00 0.00 0.00 2.10
3921 4180 6.426587 ACAGTGCAATTTCCCATACTTCTAT 58.573 36.000 0.00 0.00 0.00 1.98
3922 4181 7.573710 ACAGTGCAATTTCCCATACTTCTATA 58.426 34.615 0.00 0.00 0.00 1.31
3923 4182 8.220559 ACAGTGCAATTTCCCATACTTCTATAT 58.779 33.333 0.00 0.00 0.00 0.86
3924 4183 9.725019 CAGTGCAATTTCCCATACTTCTATATA 57.275 33.333 0.00 0.00 0.00 0.86
3947 4206 0.609131 GTATGTTGGGCACTGCTGGT 60.609 55.000 0.00 0.00 0.00 4.00
3960 4219 4.156739 GCACTGCTGGTATTTTAAAGAGCT 59.843 41.667 3.29 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.704888 CTTTTTATTGTATGGTTGACGCCA 58.295 37.500 0.00 0.00 43.48 5.69
1 2 4.561213 GCTTTTTATTGTATGGTTGACGCC 59.439 41.667 0.00 0.00 0.00 5.68
2 3 4.561213 GGCTTTTTATTGTATGGTTGACGC 59.439 41.667 0.00 0.00 0.00 5.19
4 5 6.589907 CCAAGGCTTTTTATTGTATGGTTGAC 59.410 38.462 0.00 0.00 0.00 3.18
5 6 6.495181 TCCAAGGCTTTTTATTGTATGGTTGA 59.505 34.615 0.00 0.00 0.00 3.18
6 7 6.696411 TCCAAGGCTTTTTATTGTATGGTTG 58.304 36.000 0.00 0.00 0.00 3.77
7 8 6.723977 TCTCCAAGGCTTTTTATTGTATGGTT 59.276 34.615 0.00 0.00 0.00 3.67
8 9 6.252995 TCTCCAAGGCTTTTTATTGTATGGT 58.747 36.000 0.00 0.00 0.00 3.55
9 10 6.773976 TCTCCAAGGCTTTTTATTGTATGG 57.226 37.500 0.00 0.00 0.00 2.74
10 11 6.753744 GCTTCTCCAAGGCTTTTTATTGTATG 59.246 38.462 0.00 0.00 0.00 2.39
11 12 6.437162 TGCTTCTCCAAGGCTTTTTATTGTAT 59.563 34.615 0.00 0.00 0.00 2.29
12 13 5.772672 TGCTTCTCCAAGGCTTTTTATTGTA 59.227 36.000 0.00 0.00 0.00 2.41
13 14 4.588528 TGCTTCTCCAAGGCTTTTTATTGT 59.411 37.500 0.00 0.00 0.00 2.71
14 15 5.138125 TGCTTCTCCAAGGCTTTTTATTG 57.862 39.130 0.00 0.00 0.00 1.90
15 16 5.806654 TTGCTTCTCCAAGGCTTTTTATT 57.193 34.783 0.00 0.00 0.00 1.40
16 17 5.806654 TTTGCTTCTCCAAGGCTTTTTAT 57.193 34.783 0.00 0.00 0.00 1.40
17 18 5.070313 ACATTTGCTTCTCCAAGGCTTTTTA 59.930 36.000 0.00 0.00 0.00 1.52
18 19 4.141642 ACATTTGCTTCTCCAAGGCTTTTT 60.142 37.500 0.00 0.00 0.00 1.94
19 20 3.389002 ACATTTGCTTCTCCAAGGCTTTT 59.611 39.130 0.00 0.00 0.00 2.27
20 21 2.967887 ACATTTGCTTCTCCAAGGCTTT 59.032 40.909 0.00 0.00 0.00 3.51
21 22 2.601905 ACATTTGCTTCTCCAAGGCTT 58.398 42.857 0.00 0.00 0.00 4.35
22 23 2.299326 ACATTTGCTTCTCCAAGGCT 57.701 45.000 0.00 0.00 0.00 4.58
23 24 3.696051 TCATACATTTGCTTCTCCAAGGC 59.304 43.478 0.00 0.00 0.00 4.35
24 25 4.701651 TGTCATACATTTGCTTCTCCAAGG 59.298 41.667 0.00 0.00 0.00 3.61
25 26 5.645067 TCTGTCATACATTTGCTTCTCCAAG 59.355 40.000 0.00 0.00 0.00 3.61
26 27 5.559770 TCTGTCATACATTTGCTTCTCCAA 58.440 37.500 0.00 0.00 0.00 3.53
27 28 5.164620 TCTGTCATACATTTGCTTCTCCA 57.835 39.130 0.00 0.00 0.00 3.86
28 29 4.034975 GCTCTGTCATACATTTGCTTCTCC 59.965 45.833 0.00 0.00 0.00 3.71
29 30 4.874966 AGCTCTGTCATACATTTGCTTCTC 59.125 41.667 0.00 0.00 28.63 2.87
30 31 4.841422 AGCTCTGTCATACATTTGCTTCT 58.159 39.130 0.00 0.00 28.63 2.85
31 32 6.668541 TTAGCTCTGTCATACATTTGCTTC 57.331 37.500 0.00 0.00 32.85 3.86
32 33 6.825213 TGATTAGCTCTGTCATACATTTGCTT 59.175 34.615 0.00 0.00 32.85 3.91
33 34 6.351711 TGATTAGCTCTGTCATACATTTGCT 58.648 36.000 0.00 0.00 34.23 3.91
34 35 6.609237 TGATTAGCTCTGTCATACATTTGC 57.391 37.500 0.00 0.00 0.00 3.68
41 42 7.054491 TGCTTGTATGATTAGCTCTGTCATA 57.946 36.000 10.07 10.07 35.93 2.15
42 43 5.922053 TGCTTGTATGATTAGCTCTGTCAT 58.078 37.500 11.62 11.62 35.93 3.06
43 44 5.343307 TGCTTGTATGATTAGCTCTGTCA 57.657 39.130 0.00 0.00 35.93 3.58
44 45 5.582269 TGTTGCTTGTATGATTAGCTCTGTC 59.418 40.000 0.00 0.00 35.93 3.51
45 46 5.352569 GTGTTGCTTGTATGATTAGCTCTGT 59.647 40.000 0.00 0.00 35.93 3.41
46 47 5.220739 GGTGTTGCTTGTATGATTAGCTCTG 60.221 44.000 0.00 0.00 35.93 3.35
47 48 4.878397 GGTGTTGCTTGTATGATTAGCTCT 59.122 41.667 0.00 0.00 35.93 4.09
48 49 4.878397 AGGTGTTGCTTGTATGATTAGCTC 59.122 41.667 0.00 0.00 35.93 4.09
49 50 4.848357 AGGTGTTGCTTGTATGATTAGCT 58.152 39.130 0.00 0.00 35.93 3.32
50 51 4.260375 CGAGGTGTTGCTTGTATGATTAGC 60.260 45.833 0.00 0.00 35.50 3.09
51 52 4.260375 GCGAGGTGTTGCTTGTATGATTAG 60.260 45.833 0.00 0.00 0.00 1.73
52 53 3.621268 GCGAGGTGTTGCTTGTATGATTA 59.379 43.478 0.00 0.00 0.00 1.75
53 54 2.420022 GCGAGGTGTTGCTTGTATGATT 59.580 45.455 0.00 0.00 0.00 2.57
54 55 2.009774 GCGAGGTGTTGCTTGTATGAT 58.990 47.619 0.00 0.00 0.00 2.45
55 56 1.438651 GCGAGGTGTTGCTTGTATGA 58.561 50.000 0.00 0.00 0.00 2.15
56 57 0.447801 GGCGAGGTGTTGCTTGTATG 59.552 55.000 0.00 0.00 32.95 2.39
57 58 0.036164 TGGCGAGGTGTTGCTTGTAT 59.964 50.000 0.00 0.00 32.95 2.29
58 59 0.036164 ATGGCGAGGTGTTGCTTGTA 59.964 50.000 0.00 0.00 32.95 2.41
59 60 0.036164 TATGGCGAGGTGTTGCTTGT 59.964 50.000 0.00 0.00 32.95 3.16
60 61 0.447801 GTATGGCGAGGTGTTGCTTG 59.552 55.000 0.00 0.00 32.95 4.01
61 62 0.036164 TGTATGGCGAGGTGTTGCTT 59.964 50.000 0.00 0.00 32.95 3.91
62 63 0.036164 TTGTATGGCGAGGTGTTGCT 59.964 50.000 0.00 0.00 32.95 3.91
63 64 1.064060 GATTGTATGGCGAGGTGTTGC 59.936 52.381 0.00 0.00 0.00 4.17
64 65 2.355197 TGATTGTATGGCGAGGTGTTG 58.645 47.619 0.00 0.00 0.00 3.33
65 66 2.779755 TGATTGTATGGCGAGGTGTT 57.220 45.000 0.00 0.00 0.00 3.32
66 67 2.027192 ACTTGATTGTATGGCGAGGTGT 60.027 45.455 0.00 0.00 0.00 4.16
67 68 2.632377 ACTTGATTGTATGGCGAGGTG 58.368 47.619 0.00 0.00 0.00 4.00
68 69 3.350219 AACTTGATTGTATGGCGAGGT 57.650 42.857 0.00 0.00 0.00 3.85
69 70 6.481976 TGTATAAACTTGATTGTATGGCGAGG 59.518 38.462 0.00 0.00 0.00 4.63
70 71 7.345192 GTGTATAAACTTGATTGTATGGCGAG 58.655 38.462 0.00 0.00 0.00 5.03
71 72 6.019398 CGTGTATAAACTTGATTGTATGGCGA 60.019 38.462 0.00 0.00 0.00 5.54
72 73 6.126741 CGTGTATAAACTTGATTGTATGGCG 58.873 40.000 0.00 0.00 0.00 5.69
73 74 6.037830 ACCGTGTATAAACTTGATTGTATGGC 59.962 38.462 0.00 0.00 0.00 4.40
74 75 7.548196 ACCGTGTATAAACTTGATTGTATGG 57.452 36.000 0.00 0.00 0.00 2.74
75 76 9.089601 TGTACCGTGTATAAACTTGATTGTATG 57.910 33.333 0.00 0.00 0.00 2.39
76 77 9.826574 ATGTACCGTGTATAAACTTGATTGTAT 57.173 29.630 0.00 0.00 0.00 2.29
77 78 9.304731 GATGTACCGTGTATAAACTTGATTGTA 57.695 33.333 0.00 0.00 0.00 2.41
78 79 7.279313 GGATGTACCGTGTATAAACTTGATTGT 59.721 37.037 0.00 0.00 0.00 2.71
79 80 7.254658 GGGATGTACCGTGTATAAACTTGATTG 60.255 40.741 0.00 0.00 40.11 2.67
80 81 6.764560 GGGATGTACCGTGTATAAACTTGATT 59.235 38.462 0.00 0.00 40.11 2.57
81 82 6.099269 AGGGATGTACCGTGTATAAACTTGAT 59.901 38.462 0.00 0.00 40.11 2.57
82 83 5.422970 AGGGATGTACCGTGTATAAACTTGA 59.577 40.000 0.00 0.00 40.11 3.02
83 84 5.667466 AGGGATGTACCGTGTATAAACTTG 58.333 41.667 0.00 0.00 40.11 3.16
84 85 5.945144 AGGGATGTACCGTGTATAAACTT 57.055 39.130 0.00 0.00 40.11 2.66
85 86 5.945144 AAGGGATGTACCGTGTATAAACT 57.055 39.130 0.00 0.00 40.11 2.66
86 87 6.108015 TCAAAGGGATGTACCGTGTATAAAC 58.892 40.000 0.00 0.00 40.11 2.01
87 88 6.297080 TCAAAGGGATGTACCGTGTATAAA 57.703 37.500 0.00 0.00 40.11 1.40
88 89 5.936187 TCAAAGGGATGTACCGTGTATAA 57.064 39.130 0.00 0.00 40.11 0.98
89 90 5.936187 TTCAAAGGGATGTACCGTGTATA 57.064 39.130 0.00 0.00 40.11 1.47
90 91 4.829872 TTCAAAGGGATGTACCGTGTAT 57.170 40.909 0.00 0.00 40.11 2.29
91 92 4.020039 ACATTCAAAGGGATGTACCGTGTA 60.020 41.667 0.00 0.00 40.11 2.90
92 93 3.244770 ACATTCAAAGGGATGTACCGTGT 60.245 43.478 0.00 0.00 40.11 4.49
93 94 3.343617 ACATTCAAAGGGATGTACCGTG 58.656 45.455 0.00 0.00 40.11 4.94
94 95 3.713826 ACATTCAAAGGGATGTACCGT 57.286 42.857 0.00 0.00 40.11 4.83
95 96 5.385509 AAAACATTCAAAGGGATGTACCG 57.614 39.130 0.00 0.00 40.11 4.02
96 97 5.408299 GCAAAAACATTCAAAGGGATGTACC 59.592 40.000 0.00 0.00 38.08 3.34
97 98 6.223120 AGCAAAAACATTCAAAGGGATGTAC 58.777 36.000 0.00 0.00 0.00 2.90
98 99 6.418057 AGCAAAAACATTCAAAGGGATGTA 57.582 33.333 0.00 0.00 0.00 2.29
99 100 5.294734 AGCAAAAACATTCAAAGGGATGT 57.705 34.783 0.00 0.00 0.00 3.06
100 101 5.759273 TCAAGCAAAAACATTCAAAGGGATG 59.241 36.000 0.00 0.00 0.00 3.51
101 102 5.759763 GTCAAGCAAAAACATTCAAAGGGAT 59.240 36.000 0.00 0.00 0.00 3.85
102 103 5.115480 GTCAAGCAAAAACATTCAAAGGGA 58.885 37.500 0.00 0.00 0.00 4.20
103 104 4.874966 TGTCAAGCAAAAACATTCAAAGGG 59.125 37.500 0.00 0.00 0.00 3.95
104 105 6.607735 ATGTCAAGCAAAAACATTCAAAGG 57.392 33.333 0.00 0.00 29.51 3.11
110 111 5.070847 AGAGGGAATGTCAAGCAAAAACATT 59.929 36.000 6.50 6.50 44.14 2.71
111 112 4.590222 AGAGGGAATGTCAAGCAAAAACAT 59.410 37.500 0.00 0.00 35.20 2.71
112 113 3.960102 AGAGGGAATGTCAAGCAAAAACA 59.040 39.130 0.00 0.00 0.00 2.83
113 114 4.590850 AGAGGGAATGTCAAGCAAAAAC 57.409 40.909 0.00 0.00 0.00 2.43
114 115 6.723298 TTTAGAGGGAATGTCAAGCAAAAA 57.277 33.333 0.00 0.00 0.00 1.94
115 116 6.916360 ATTTAGAGGGAATGTCAAGCAAAA 57.084 33.333 0.00 0.00 0.00 2.44
116 117 6.493115 TGAATTTAGAGGGAATGTCAAGCAAA 59.507 34.615 0.00 0.00 0.00 3.68
117 118 6.009589 TGAATTTAGAGGGAATGTCAAGCAA 58.990 36.000 0.00 0.00 0.00 3.91
118 119 5.415701 GTGAATTTAGAGGGAATGTCAAGCA 59.584 40.000 0.00 0.00 0.00 3.91
119 120 5.649831 AGTGAATTTAGAGGGAATGTCAAGC 59.350 40.000 0.00 0.00 0.00 4.01
120 121 8.792830 TTAGTGAATTTAGAGGGAATGTCAAG 57.207 34.615 0.00 0.00 0.00 3.02
152 153 9.495572 AATTATTAGTGAATTTTCCCGCAAAAA 57.504 25.926 0.00 0.00 37.52 1.94
155 156 9.796120 CTTAATTATTAGTGAATTTTCCCGCAA 57.204 29.630 0.00 0.00 0.00 4.85
156 157 7.918562 GCTTAATTATTAGTGAATTTTCCCGCA 59.081 33.333 0.00 0.00 0.00 5.69
157 158 7.112984 CGCTTAATTATTAGTGAATTTTCCCGC 59.887 37.037 0.00 0.00 0.00 6.13
158 159 7.589954 CCGCTTAATTATTAGTGAATTTTCCCG 59.410 37.037 0.23 0.00 0.00 5.14
159 160 8.410912 ACCGCTTAATTATTAGTGAATTTTCCC 58.589 33.333 0.23 0.00 0.00 3.97
160 161 9.233232 CACCGCTTAATTATTAGTGAATTTTCC 57.767 33.333 0.23 0.00 0.00 3.13
161 162 9.783256 ACACCGCTTAATTATTAGTGAATTTTC 57.217 29.630 8.43 0.00 0.00 2.29
177 178 8.252417 TGAAACTATGTCTTATACACCGCTTAA 58.748 33.333 0.00 0.00 42.09 1.85
182 183 7.220300 GTCACTGAAACTATGTCTTATACACCG 59.780 40.741 0.00 0.00 42.09 4.94
194 195 9.950680 AAGTACAAAAATGTCACTGAAACTATG 57.049 29.630 0.00 0.00 0.00 2.23
197 198 7.065324 TCGAAGTACAAAAATGTCACTGAAACT 59.935 33.333 0.00 0.00 0.00 2.66
208 209 5.007234 TGGTCACAGTCGAAGTACAAAAATG 59.993 40.000 0.00 0.00 0.00 2.32
210 211 4.505808 TGGTCACAGTCGAAGTACAAAAA 58.494 39.130 0.00 0.00 0.00 1.94
305 306 5.701290 GCACTAGTATAGGCATAAAACCCTG 59.299 44.000 0.00 0.00 44.97 4.45
323 324 8.886719 TGATAAATGACTCTGAAAATGCACTAG 58.113 33.333 0.00 0.00 0.00 2.57
324 325 8.791327 TGATAAATGACTCTGAAAATGCACTA 57.209 30.769 0.00 0.00 0.00 2.74
325 326 7.692460 TGATAAATGACTCTGAAAATGCACT 57.308 32.000 0.00 0.00 0.00 4.40
326 327 8.746922 TTTGATAAATGACTCTGAAAATGCAC 57.253 30.769 0.00 0.00 0.00 4.57
327 328 7.543172 GCTTTGATAAATGACTCTGAAAATGCA 59.457 33.333 0.00 0.00 0.00 3.96
331 332 9.507329 ACTAGCTTTGATAAATGACTCTGAAAA 57.493 29.630 0.00 0.00 0.00 2.29
333 334 9.587772 GTACTAGCTTTGATAAATGACTCTGAA 57.412 33.333 0.00 0.00 0.00 3.02
334 335 8.749354 TGTACTAGCTTTGATAAATGACTCTGA 58.251 33.333 0.00 0.00 0.00 3.27
335 336 8.932945 TGTACTAGCTTTGATAAATGACTCTG 57.067 34.615 0.00 0.00 0.00 3.35
356 362 7.237173 GCAATGACACAACTCTTAAGATGTAC 58.763 38.462 10.62 9.00 36.47 2.90
357 363 6.371548 GGCAATGACACAACTCTTAAGATGTA 59.628 38.462 10.62 0.00 36.47 2.29
358 364 5.182001 GGCAATGACACAACTCTTAAGATGT 59.818 40.000 5.44 7.39 38.92 3.06
360 366 4.702131 GGGCAATGACACAACTCTTAAGAT 59.298 41.667 5.44 0.00 0.00 2.40
362 368 3.820467 TGGGCAATGACACAACTCTTAAG 59.180 43.478 0.00 0.00 0.00 1.85
363 369 3.826524 TGGGCAATGACACAACTCTTAA 58.173 40.909 0.00 0.00 0.00 1.85
364 370 3.500448 TGGGCAATGACACAACTCTTA 57.500 42.857 0.00 0.00 0.00 2.10
367 373 3.123050 GTTTTGGGCAATGACACAACTC 58.877 45.455 0.00 0.00 0.00 3.01
368 374 2.499289 TGTTTTGGGCAATGACACAACT 59.501 40.909 8.19 0.00 30.74 3.16
369 375 2.898705 TGTTTTGGGCAATGACACAAC 58.101 42.857 0.00 0.00 0.00 3.32
404 410 3.064931 GGAAAGTTACGTCCTGGTTCAG 58.935 50.000 0.00 0.00 0.00 3.02
428 434 8.258007 CCGGCACAAAGGAGAGATTATATAATA 58.742 37.037 7.97 0.00 0.00 0.98
429 435 7.106239 CCGGCACAAAGGAGAGATTATATAAT 58.894 38.462 7.72 7.72 0.00 1.28
430 436 6.042781 ACCGGCACAAAGGAGAGATTATATAA 59.957 38.462 0.00 0.00 0.00 0.98
431 437 5.542635 ACCGGCACAAAGGAGAGATTATATA 59.457 40.000 0.00 0.00 0.00 0.86
432 438 4.348168 ACCGGCACAAAGGAGAGATTATAT 59.652 41.667 0.00 0.00 0.00 0.86
433 439 3.709653 ACCGGCACAAAGGAGAGATTATA 59.290 43.478 0.00 0.00 0.00 0.98
434 440 2.505819 ACCGGCACAAAGGAGAGATTAT 59.494 45.455 0.00 0.00 0.00 1.28
451 457 1.666872 GACACGTGGGAAGAACCGG 60.667 63.158 21.57 0.00 40.11 5.28
452 458 0.599558 TAGACACGTGGGAAGAACCG 59.400 55.000 21.57 0.00 40.11 4.44
457 463 3.587797 TTAAGCTAGACACGTGGGAAG 57.412 47.619 21.57 14.00 0.00 3.46
465 471 9.036671 GGTTTATCTTCTCATTAAGCTAGACAC 57.963 37.037 0.00 0.00 0.00 3.67
478 484 2.500098 CGGGACCAGGTTTATCTTCTCA 59.500 50.000 0.00 0.00 0.00 3.27
479 485 2.500504 ACGGGACCAGGTTTATCTTCTC 59.499 50.000 0.00 0.00 0.00 2.87
511 517 7.070571 ACCTTTCCAATTATGTTCCTGACAAAA 59.929 33.333 0.00 0.00 42.62 2.44
521 527 7.360113 ACAAACTCACCTTTCCAATTATGTT 57.640 32.000 0.00 0.00 0.00 2.71
522 528 6.976934 ACAAACTCACCTTTCCAATTATGT 57.023 33.333 0.00 0.00 0.00 2.29
535 541 5.221843 TGGGGAGCATATATACAAACTCACC 60.222 44.000 13.69 13.69 45.97 4.02
542 548 3.512496 TCCGTGGGGAGCATATATACAA 58.488 45.455 0.00 0.00 37.43 2.41
543 549 3.178412 TCCGTGGGGAGCATATATACA 57.822 47.619 0.00 0.00 37.43 2.29
555 561 6.769134 AAACTAAAAAGATAATCCGTGGGG 57.231 37.500 0.00 0.00 0.00 4.96
593 599 0.963962 CTGCTGGCCATGTGAAAACT 59.036 50.000 5.51 0.00 0.00 2.66
594 600 0.961019 TCTGCTGGCCATGTGAAAAC 59.039 50.000 5.51 0.00 0.00 2.43
607 613 3.440522 CAGATAATGGATGCCATCTGCTG 59.559 47.826 4.41 4.22 44.40 4.41
608 614 3.329814 TCAGATAATGGATGCCATCTGCT 59.670 43.478 4.41 1.55 44.40 4.24
633 639 6.485313 CCCAGCATGCATAAATTTCATTTGAT 59.515 34.615 21.98 0.00 31.56 2.57
634 640 5.818336 CCCAGCATGCATAAATTTCATTTGA 59.182 36.000 21.98 0.00 31.56 2.69
635 641 5.008217 CCCCAGCATGCATAAATTTCATTTG 59.992 40.000 21.98 4.05 31.56 2.32
657 673 3.317430 GTCTGCCATTTCAGATGATTCCC 59.683 47.826 0.00 0.00 44.04 3.97
663 679 5.007430 GTCTATGTGTCTGCCATTTCAGATG 59.993 44.000 0.00 0.00 44.04 2.90
665 681 4.020307 TGTCTATGTGTCTGCCATTTCAGA 60.020 41.667 0.00 0.00 40.50 3.27
673 689 1.734465 GTTGCTGTCTATGTGTCTGCC 59.266 52.381 0.00 0.00 0.00 4.85
684 700 4.717233 TTTGATTGTGTTGTTGCTGTCT 57.283 36.364 0.00 0.00 0.00 3.41
685 701 5.724769 GCTTTTTGATTGTGTTGTTGCTGTC 60.725 40.000 0.00 0.00 0.00 3.51
686 702 4.093261 GCTTTTTGATTGTGTTGTTGCTGT 59.907 37.500 0.00 0.00 0.00 4.40
702 718 8.600449 TGGAACTAATTACCATTTGCTTTTTG 57.400 30.769 0.00 0.00 0.00 2.44
709 725 8.143835 GGATTGGATGGAACTAATTACCATTTG 58.856 37.037 7.35 0.00 43.30 2.32
715 731 7.556275 TCACTTGGATTGGATGGAACTAATTAC 59.444 37.037 0.00 0.00 0.00 1.89
717 733 6.378280 GTCACTTGGATTGGATGGAACTAATT 59.622 38.462 0.00 0.00 0.00 1.40
719 735 5.222027 TGTCACTTGGATTGGATGGAACTAA 60.222 40.000 0.00 0.00 0.00 2.24
721 737 3.074390 TGTCACTTGGATTGGATGGAACT 59.926 43.478 0.00 0.00 0.00 3.01
722 738 3.420893 TGTCACTTGGATTGGATGGAAC 58.579 45.455 0.00 0.00 0.00 3.62
723 739 3.805066 TGTCACTTGGATTGGATGGAA 57.195 42.857 0.00 0.00 0.00 3.53
724 740 3.805066 TTGTCACTTGGATTGGATGGA 57.195 42.857 0.00 0.00 0.00 3.41
725 741 5.066893 CAGTATTGTCACTTGGATTGGATGG 59.933 44.000 0.00 0.00 0.00 3.51
726 742 5.066893 CCAGTATTGTCACTTGGATTGGATG 59.933 44.000 0.00 0.00 0.00 3.51
727 743 5.195940 CCAGTATTGTCACTTGGATTGGAT 58.804 41.667 0.00 0.00 0.00 3.41
728 744 4.588899 CCAGTATTGTCACTTGGATTGGA 58.411 43.478 0.00 0.00 0.00 3.53
729 745 3.129287 GCCAGTATTGTCACTTGGATTGG 59.871 47.826 0.00 0.00 0.00 3.16
737 753 4.844349 ATACCTTGCCAGTATTGTCACT 57.156 40.909 0.00 0.00 0.00 3.41
828 847 4.079787 TCCCTTGGAAGATAAAGACATGGG 60.080 45.833 0.00 0.00 43.90 4.00
833 852 7.503902 AGCATAATTCCCTTGGAAGATAAAGAC 59.496 37.037 1.64 0.00 45.48 3.01
846 865 9.353431 ACAAAATTTGAAAAGCATAATTCCCTT 57.647 25.926 13.19 0.00 0.00 3.95
867 948 3.192422 CCTGATACGCCCATCAAACAAAA 59.808 43.478 0.00 0.00 34.59 2.44
869 950 2.290641 ACCTGATACGCCCATCAAACAA 60.291 45.455 0.00 0.00 34.59 2.83
877 958 0.034574 ATGCAAACCTGATACGCCCA 60.035 50.000 0.00 0.00 0.00 5.36
981 1072 9.772973 ATATATACAGCCGTTCTTGATTTTACA 57.227 29.630 0.00 0.00 0.00 2.41
1000 1091 6.040616 CCGGGACAAGAGGGTGATATATATAC 59.959 46.154 0.00 0.00 0.00 1.47
1169 1280 3.255149 AGTTGACGAAGGTGACGTAGAAT 59.745 43.478 0.00 0.00 43.97 2.40
1261 1372 1.000019 TCCGGGATGGTCTCGAACT 60.000 57.895 0.00 0.00 44.60 3.01
1283 1394 4.873129 TTCTCGATCGGCGGCAGC 62.873 66.667 16.41 0.00 41.33 5.25
1578 1704 1.267121 AACTCCATGGAGCACGTAGT 58.733 50.000 36.78 17.24 45.54 2.73
1597 1738 5.356751 AGTTATAATTTGCAGCCGATCACAA 59.643 36.000 0.00 0.00 0.00 3.33
1604 1753 2.375110 CGCAGTTATAATTTGCAGCCG 58.625 47.619 18.93 5.14 37.69 5.52
1606 1755 2.785477 CAGCGCAGTTATAATTTGCAGC 59.215 45.455 11.47 19.77 37.69 5.25
1623 1778 1.733416 CGTCTACGACATGTGCAGCG 61.733 60.000 1.15 2.53 43.02 5.18
1649 1804 1.202268 CGAGGTATCCGTTGGTCAGAC 60.202 57.143 0.00 0.00 0.00 3.51
1750 1905 1.792949 GAAGTTGAGCATGACGTCGTT 59.207 47.619 7.76 0.00 0.00 3.85
1810 1965 2.607187 GTCGAACGTGTTGAGGATGAT 58.393 47.619 0.00 0.00 0.00 2.45
2265 2429 2.915659 AGCGTCGAGTTCCACCCA 60.916 61.111 0.00 0.00 0.00 4.51
2603 2767 0.329261 TCAGGGGGCTGATTCAACAG 59.671 55.000 0.00 0.00 40.43 3.16
2626 2790 3.486383 CAACCCCATATACCCATCACAC 58.514 50.000 0.00 0.00 0.00 3.82
2677 2841 2.113289 CGCACAACGGTTTTAAACAGG 58.887 47.619 12.09 5.02 38.44 4.00
2730 2923 5.504994 GCACCGAGAAAACAACATTGTAGAA 60.505 40.000 0.00 0.00 41.31 2.10
2736 2929 2.687935 ACAGCACCGAGAAAACAACATT 59.312 40.909 0.00 0.00 0.00 2.71
2741 2934 1.202440 ACGTACAGCACCGAGAAAACA 60.202 47.619 0.00 0.00 0.00 2.83
2754 2947 3.841643 AGACCGGTGAAAATACGTACAG 58.158 45.455 14.63 0.00 0.00 2.74
2763 2958 4.145365 TCTTCAGAAAGACCGGTGAAAA 57.855 40.909 14.63 0.00 36.59 2.29
2771 2966 6.625873 AGACAAATGTTCTTCAGAAAGACC 57.374 37.500 0.00 0.00 41.23 3.85
2775 2970 7.939039 ACAGGATAGACAAATGTTCTTCAGAAA 59.061 33.333 0.00 0.00 35.58 2.52
2777 2972 7.009179 ACAGGATAGACAAATGTTCTTCAGA 57.991 36.000 0.00 0.00 0.00 3.27
2791 2986 8.068977 CGACACTATTACTGTTACAGGATAGAC 58.931 40.741 28.23 20.78 36.34 2.59
2806 3001 3.099362 CTGCGACACTCGACACTATTAC 58.901 50.000 0.00 0.00 43.74 1.89
2807 3002 2.096980 CCTGCGACACTCGACACTATTA 59.903 50.000 0.00 0.00 43.74 0.98
2808 3003 1.135373 CCTGCGACACTCGACACTATT 60.135 52.381 0.00 0.00 43.74 1.73
2809 3004 0.452184 CCTGCGACACTCGACACTAT 59.548 55.000 0.00 0.00 43.74 2.12
2810 3005 0.604511 TCCTGCGACACTCGACACTA 60.605 55.000 0.00 0.00 43.74 2.74
2811 3006 1.452953 TTCCTGCGACACTCGACACT 61.453 55.000 0.00 0.00 43.74 3.55
2812 3007 1.007734 TTCCTGCGACACTCGACAC 60.008 57.895 0.00 0.00 43.74 3.67
2813 3008 1.007734 GTTCCTGCGACACTCGACA 60.008 57.895 0.00 0.00 43.74 4.35
2814 3009 0.596600 TTGTTCCTGCGACACTCGAC 60.597 55.000 0.00 0.00 43.74 4.20
2825 3020 5.261209 TGAATGGTGTTCTTTTGTTCCTG 57.739 39.130 0.00 0.00 0.00 3.86
2835 3030 5.417894 TGTCTACGAGTATGAATGGTGTTCT 59.582 40.000 0.00 0.00 0.00 3.01
2836 3031 5.647589 TGTCTACGAGTATGAATGGTGTTC 58.352 41.667 0.00 0.00 0.00 3.18
2839 3034 7.173390 TCTCTATGTCTACGAGTATGAATGGTG 59.827 40.741 0.00 0.00 0.00 4.17
2841 3036 7.674471 TCTCTATGTCTACGAGTATGAATGG 57.326 40.000 0.00 0.00 0.00 3.16
2842 3037 8.994170 TCTTCTCTATGTCTACGAGTATGAATG 58.006 37.037 0.00 0.00 0.00 2.67
2850 3045 5.045215 AGTCGTCTTCTCTATGTCTACGAG 58.955 45.833 0.00 0.00 38.41 4.18
2851 3046 5.008619 AGTCGTCTTCTCTATGTCTACGA 57.991 43.478 0.00 0.00 35.73 3.43
2929 3124 4.082787 CCCATTGTACTGCGAAACTGAATT 60.083 41.667 0.00 0.00 0.00 2.17
2930 3125 3.440173 CCCATTGTACTGCGAAACTGAAT 59.560 43.478 0.00 0.00 0.00 2.57
3033 3228 5.334879 CCAAAATACTCGTTTCTTGACTGGG 60.335 44.000 0.00 0.00 0.00 4.45
3218 3413 2.223971 ACAACCAACTCAGACAGTACCG 60.224 50.000 0.00 0.00 32.30 4.02
3220 3415 4.051922 CTCACAACCAACTCAGACAGTAC 58.948 47.826 0.00 0.00 32.30 2.73
3255 3450 0.037877 ACTCATGGCTTTCTGCTGCT 59.962 50.000 0.00 0.00 42.39 4.24
3256 3451 0.886563 AACTCATGGCTTTCTGCTGC 59.113 50.000 0.00 0.00 42.39 5.25
3267 3462 6.539649 TCGAACTTTGAAGTAAACTCATGG 57.460 37.500 0.00 0.00 38.57 3.66
3280 3475 7.109501 TCCCATCTTATTTGATCGAACTTTGA 58.890 34.615 0.00 0.00 0.00 2.69
3288 3483 7.148738 CGACTATGTTCCCATCTTATTTGATCG 60.149 40.741 0.00 0.00 32.29 3.69
3296 3546 6.665992 ATAAGCGACTATGTTCCCATCTTA 57.334 37.500 0.00 0.00 32.29 2.10
3334 3584 4.424061 TTTGCTGTTGTCATACTCATGC 57.576 40.909 0.00 0.00 31.73 4.06
3359 3609 9.981114 AGTTTTCAGACCACCAAAATAAATAAG 57.019 29.630 0.00 0.00 0.00 1.73
3495 3746 2.680913 CCGTTCTTTCAGCAGCCGG 61.681 63.158 0.00 0.00 0.00 6.13
3639 3890 5.049543 GCCTTTTACAATCAAATGCAGCAAA 60.050 36.000 0.00 0.00 0.00 3.68
3671 3922 9.058174 TGAATTCATGCAATGTCTGAAATTTTT 57.942 25.926 3.38 0.00 46.80 1.94
3675 3926 6.931838 ACTGAATTCATGCAATGTCTGAAAT 58.068 32.000 8.96 0.00 46.80 2.17
3691 3942 8.660373 CCACTTATGTTAGAACTGACTGAATTC 58.340 37.037 0.00 0.00 0.00 2.17
3692 3943 7.607991 CCCACTTATGTTAGAACTGACTGAATT 59.392 37.037 0.00 0.00 0.00 2.17
3693 3944 7.106239 CCCACTTATGTTAGAACTGACTGAAT 58.894 38.462 0.00 0.00 0.00 2.57
3709 3960 4.517285 AGCACAATACAGACCCACTTATG 58.483 43.478 0.00 0.00 0.00 1.90
3917 4176 8.204160 GCAGTGCCCAACATACATATATATAGA 58.796 37.037 2.85 0.00 0.00 1.98
3918 4177 8.206867 AGCAGTGCCCAACATACATATATATAG 58.793 37.037 12.58 0.00 0.00 1.31
3919 4178 7.986889 CAGCAGTGCCCAACATACATATATATA 59.013 37.037 12.58 0.00 0.00 0.86
3920 4179 6.825213 CAGCAGTGCCCAACATACATATATAT 59.175 38.462 12.58 0.00 0.00 0.86
3921 4180 6.172630 CAGCAGTGCCCAACATACATATATA 58.827 40.000 12.58 0.00 0.00 0.86
3922 4181 5.005740 CAGCAGTGCCCAACATACATATAT 58.994 41.667 12.58 0.00 0.00 0.86
3923 4182 4.388485 CAGCAGTGCCCAACATACATATA 58.612 43.478 12.58 0.00 0.00 0.86
3924 4183 3.216800 CAGCAGTGCCCAACATACATAT 58.783 45.455 12.58 0.00 0.00 1.78
3925 4184 2.642427 CAGCAGTGCCCAACATACATA 58.358 47.619 12.58 0.00 0.00 2.29
3926 4185 1.466856 CAGCAGTGCCCAACATACAT 58.533 50.000 12.58 0.00 0.00 2.29
3927 4186 0.608856 CCAGCAGTGCCCAACATACA 60.609 55.000 12.58 0.00 0.00 2.29
3928 4187 0.609131 ACCAGCAGTGCCCAACATAC 60.609 55.000 12.58 0.00 0.00 2.39
3938 4197 5.886960 AGCTCTTTAAAATACCAGCAGTG 57.113 39.130 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.