Multiple sequence alignment - TraesCS6D01G296800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G296800 chr6D 100.000 2960 0 0 1 2960 408153175 408156134 0.000000e+00 5467.0
1 TraesCS6D01G296800 chr6D 92.130 737 58 0 2222 2958 59087413 59088149 0.000000e+00 1040.0
2 TraesCS6D01G296800 chr6D 90.405 740 63 3 2222 2960 420567457 420568189 0.000000e+00 966.0
3 TraesCS6D01G296800 chr6D 90.257 739 65 1 2222 2960 420560955 420560224 0.000000e+00 959.0
4 TraesCS6D01G296800 chr6A 94.941 1107 55 1 978 2083 553758168 553759274 0.000000e+00 1733.0
5 TraesCS6D01G296800 chr6A 86.223 1292 139 17 802 2067 554103471 554104749 0.000000e+00 1363.0
6 TraesCS6D01G296800 chr6A 93.911 739 45 0 2222 2960 553911628 553912366 0.000000e+00 1116.0
7 TraesCS6D01G296800 chr6A 93.939 693 42 0 2267 2959 553765338 553766030 0.000000e+00 1048.0
8 TraesCS6D01G296800 chr6A 90.591 744 59 6 2222 2960 563486473 563485736 0.000000e+00 976.0
9 TraesCS6D01G296800 chr6A 91.463 82 4 1 2081 2159 553759308 553759389 3.120000e-20 110.0
10 TraesCS6D01G296800 chr6B 90.909 1111 68 6 939 2024 612218558 612219660 0.000000e+00 1461.0
11 TraesCS6D01G296800 chr6B 93.369 739 49 0 2222 2960 612269796 612270534 0.000000e+00 1094.0
12 TraesCS6D01G296800 chr6B 92.287 752 45 6 2222 2960 612743490 612744241 0.000000e+00 1055.0
13 TraesCS6D01G296800 chr6B 89.281 737 73 1 2222 2958 633732371 633731641 0.000000e+00 918.0
14 TraesCS6D01G296800 chr6B 86.310 168 16 3 698 858 612218339 612218506 3.030000e-40 176.0
15 TraesCS6D01G296800 chr4A 76.580 269 57 6 1634 1899 499953660 499953395 3.080000e-30 143.0
16 TraesCS6D01G296800 chr4A 94.444 36 0 2 324 359 157572685 157572652 1.000000e-03 54.7
17 TraesCS6D01G296800 chr4B 88.889 45 4 1 322 365 5919974 5920018 1.000000e-03 54.7
18 TraesCS6D01G296800 chr7D 100.000 28 0 0 337 364 389328181 389328154 5.000000e-03 52.8
19 TraesCS6D01G296800 chr3A 100.000 28 0 0 337 364 167309501 167309528 5.000000e-03 52.8
20 TraesCS6D01G296800 chr1A 100.000 28 0 0 338 365 339175986 339176013 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G296800 chr6D 408153175 408156134 2959 False 5467.0 5467 100.0000 1 2960 1 chr6D.!!$F2 2959
1 TraesCS6D01G296800 chr6D 59087413 59088149 736 False 1040.0 1040 92.1300 2222 2958 1 chr6D.!!$F1 736
2 TraesCS6D01G296800 chr6D 420567457 420568189 732 False 966.0 966 90.4050 2222 2960 1 chr6D.!!$F3 738
3 TraesCS6D01G296800 chr6D 420560224 420560955 731 True 959.0 959 90.2570 2222 2960 1 chr6D.!!$R1 738
4 TraesCS6D01G296800 chr6A 554103471 554104749 1278 False 1363.0 1363 86.2230 802 2067 1 chr6A.!!$F3 1265
5 TraesCS6D01G296800 chr6A 553911628 553912366 738 False 1116.0 1116 93.9110 2222 2960 1 chr6A.!!$F2 738
6 TraesCS6D01G296800 chr6A 553765338 553766030 692 False 1048.0 1048 93.9390 2267 2959 1 chr6A.!!$F1 692
7 TraesCS6D01G296800 chr6A 563485736 563486473 737 True 976.0 976 90.5910 2222 2960 1 chr6A.!!$R1 738
8 TraesCS6D01G296800 chr6A 553758168 553759389 1221 False 921.5 1733 93.2020 978 2159 2 chr6A.!!$F4 1181
9 TraesCS6D01G296800 chr6B 612269796 612270534 738 False 1094.0 1094 93.3690 2222 2960 1 chr6B.!!$F1 738
10 TraesCS6D01G296800 chr6B 612743490 612744241 751 False 1055.0 1055 92.2870 2222 2960 1 chr6B.!!$F2 738
11 TraesCS6D01G296800 chr6B 633731641 633732371 730 True 918.0 918 89.2810 2222 2958 1 chr6B.!!$R1 736
12 TraesCS6D01G296800 chr6B 612218339 612219660 1321 False 818.5 1461 88.6095 698 2024 2 chr6B.!!$F3 1326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 647 0.032952 ACAGAAAACCGTGCTAGCGA 59.967 50.0 10.77 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2322 0.101399 CCTTCCGAGAGTGATGTCCG 59.899 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.621197 ATTGAGTGCGTAGTAAATTGCAA 57.379 34.783 0.00 0.00 39.34 4.08
24 25 5.621197 TTGAGTGCGTAGTAAATTGCAAT 57.379 34.783 5.99 5.99 39.34 3.56
25 26 4.968626 TGAGTGCGTAGTAAATTGCAATG 58.031 39.130 13.82 0.00 39.34 2.82
26 27 4.454161 TGAGTGCGTAGTAAATTGCAATGT 59.546 37.500 13.82 10.46 39.34 2.71
27 28 5.639931 TGAGTGCGTAGTAAATTGCAATGTA 59.360 36.000 13.82 9.24 39.34 2.29
28 29 5.864986 AGTGCGTAGTAAATTGCAATGTAC 58.135 37.500 26.14 26.14 39.34 2.90
29 30 5.025826 GTGCGTAGTAAATTGCAATGTACC 58.974 41.667 28.57 17.41 39.34 3.34
30 31 4.201734 TGCGTAGTAAATTGCAATGTACCG 60.202 41.667 28.57 25.72 33.80 4.02
31 32 4.201744 GCGTAGTAAATTGCAATGTACCGT 60.202 41.667 28.57 17.68 30.82 4.83
32 33 5.252583 CGTAGTAAATTGCAATGTACCGTG 58.747 41.667 28.57 17.79 30.82 4.94
33 34 4.695217 AGTAAATTGCAATGTACCGTGG 57.305 40.909 28.57 0.00 30.82 4.94
34 35 4.328536 AGTAAATTGCAATGTACCGTGGA 58.671 39.130 28.57 0.00 30.82 4.02
35 36 3.569250 AAATTGCAATGTACCGTGGAC 57.431 42.857 13.82 0.00 0.00 4.02
36 37 2.489938 ATTGCAATGTACCGTGGACT 57.510 45.000 12.09 0.00 0.00 3.85
37 38 1.518325 TTGCAATGTACCGTGGACTG 58.482 50.000 0.00 0.00 0.00 3.51
38 39 0.321210 TGCAATGTACCGTGGACTGG 60.321 55.000 0.00 0.00 0.00 4.00
39 40 1.024579 GCAATGTACCGTGGACTGGG 61.025 60.000 0.00 0.00 0.00 4.45
40 41 0.323629 CAATGTACCGTGGACTGGGT 59.676 55.000 0.00 0.00 40.35 4.51
41 42 1.551430 CAATGTACCGTGGACTGGGTA 59.449 52.381 0.00 0.00 37.75 3.69
42 43 2.169769 CAATGTACCGTGGACTGGGTAT 59.830 50.000 0.00 0.00 40.66 2.73
43 44 1.941377 TGTACCGTGGACTGGGTATT 58.059 50.000 0.00 0.00 40.66 1.89
44 45 2.259012 TGTACCGTGGACTGGGTATTT 58.741 47.619 0.00 0.00 40.66 1.40
45 46 2.638855 TGTACCGTGGACTGGGTATTTT 59.361 45.455 0.00 0.00 40.66 1.82
46 47 2.194201 ACCGTGGACTGGGTATTTTG 57.806 50.000 0.00 0.00 33.95 2.44
47 48 1.700739 ACCGTGGACTGGGTATTTTGA 59.299 47.619 0.00 0.00 33.95 2.69
48 49 2.106857 ACCGTGGACTGGGTATTTTGAA 59.893 45.455 0.00 0.00 33.95 2.69
49 50 2.747446 CCGTGGACTGGGTATTTTGAAG 59.253 50.000 0.00 0.00 0.00 3.02
50 51 3.408634 CGTGGACTGGGTATTTTGAAGT 58.591 45.455 0.00 0.00 0.00 3.01
51 52 3.435671 CGTGGACTGGGTATTTTGAAGTC 59.564 47.826 0.00 0.00 37.20 3.01
52 53 3.435671 GTGGACTGGGTATTTTGAAGTCG 59.564 47.826 0.00 0.00 38.50 4.18
53 54 3.071892 TGGACTGGGTATTTTGAAGTCGT 59.928 43.478 0.00 0.00 38.50 4.34
54 55 4.070009 GGACTGGGTATTTTGAAGTCGTT 58.930 43.478 0.00 0.00 38.50 3.85
55 56 4.083484 GGACTGGGTATTTTGAAGTCGTTG 60.083 45.833 0.00 0.00 38.50 4.10
56 57 3.252458 ACTGGGTATTTTGAAGTCGTTGC 59.748 43.478 0.00 0.00 0.00 4.17
57 58 2.554893 TGGGTATTTTGAAGTCGTTGCC 59.445 45.455 0.00 0.00 0.00 4.52
58 59 2.554893 GGGTATTTTGAAGTCGTTGCCA 59.445 45.455 0.00 0.00 0.00 4.92
59 60 3.365969 GGGTATTTTGAAGTCGTTGCCAG 60.366 47.826 0.00 0.00 0.00 4.85
60 61 3.252458 GGTATTTTGAAGTCGTTGCCAGT 59.748 43.478 0.00 0.00 0.00 4.00
61 62 4.261447 GGTATTTTGAAGTCGTTGCCAGTT 60.261 41.667 0.00 0.00 0.00 3.16
62 63 5.049267 GGTATTTTGAAGTCGTTGCCAGTTA 60.049 40.000 0.00 0.00 0.00 2.24
63 64 5.705609 ATTTTGAAGTCGTTGCCAGTTAT 57.294 34.783 0.00 0.00 0.00 1.89
64 65 4.481930 TTTGAAGTCGTTGCCAGTTATG 57.518 40.909 0.00 0.00 0.00 1.90
65 66 3.394674 TGAAGTCGTTGCCAGTTATGA 57.605 42.857 0.00 0.00 0.00 2.15
66 67 3.064207 TGAAGTCGTTGCCAGTTATGAC 58.936 45.455 0.00 0.00 0.00 3.06
67 68 2.831685 AGTCGTTGCCAGTTATGACA 57.168 45.000 0.00 0.00 33.68 3.58
68 69 2.413837 AGTCGTTGCCAGTTATGACAC 58.586 47.619 0.00 0.00 33.68 3.67
69 70 2.037251 AGTCGTTGCCAGTTATGACACT 59.963 45.455 0.00 0.00 33.68 3.55
70 71 2.806244 GTCGTTGCCAGTTATGACACTT 59.194 45.455 0.00 0.00 31.98 3.16
71 72 3.250040 GTCGTTGCCAGTTATGACACTTT 59.750 43.478 0.00 0.00 31.98 2.66
72 73 4.449743 GTCGTTGCCAGTTATGACACTTTA 59.550 41.667 0.00 0.00 31.98 1.85
73 74 5.121768 GTCGTTGCCAGTTATGACACTTTAT 59.878 40.000 0.00 0.00 31.98 1.40
74 75 5.703592 TCGTTGCCAGTTATGACACTTTATT 59.296 36.000 0.00 0.00 0.00 1.40
75 76 6.205853 TCGTTGCCAGTTATGACACTTTATTT 59.794 34.615 0.00 0.00 0.00 1.40
76 77 7.388224 TCGTTGCCAGTTATGACACTTTATTTA 59.612 33.333 0.00 0.00 0.00 1.40
77 78 7.480542 CGTTGCCAGTTATGACACTTTATTTAC 59.519 37.037 0.00 0.00 0.00 2.01
78 79 8.512138 GTTGCCAGTTATGACACTTTATTTACT 58.488 33.333 0.00 0.00 0.00 2.24
79 80 8.630054 TGCCAGTTATGACACTTTATTTACTT 57.370 30.769 0.00 0.00 0.00 2.24
80 81 9.073475 TGCCAGTTATGACACTTTATTTACTTT 57.927 29.630 0.00 0.00 0.00 2.66
81 82 9.908152 GCCAGTTATGACACTTTATTTACTTTT 57.092 29.630 0.00 0.00 0.00 2.27
88 89 8.500837 TGACACTTTATTTACTTTTGAATGCG 57.499 30.769 0.00 0.00 0.00 4.73
89 90 7.114247 TGACACTTTATTTACTTTTGAATGCGC 59.886 33.333 0.00 0.00 0.00 6.09
90 91 6.920758 ACACTTTATTTACTTTTGAATGCGCA 59.079 30.769 14.96 14.96 0.00 6.09
91 92 7.114811 ACACTTTATTTACTTTTGAATGCGCAG 59.885 33.333 18.32 1.98 0.00 5.18
92 93 7.325821 CACTTTATTTACTTTTGAATGCGCAGA 59.674 33.333 18.32 0.00 0.00 4.26
93 94 8.028938 ACTTTATTTACTTTTGAATGCGCAGAT 58.971 29.630 18.32 7.32 0.00 2.90
94 95 7.739022 TTATTTACTTTTGAATGCGCAGATG 57.261 32.000 18.32 4.06 0.00 2.90
95 96 5.369685 TTTACTTTTGAATGCGCAGATGA 57.630 34.783 18.32 0.00 0.00 2.92
96 97 3.207474 ACTTTTGAATGCGCAGATGAC 57.793 42.857 18.32 5.70 0.00 3.06
97 98 2.816087 ACTTTTGAATGCGCAGATGACT 59.184 40.909 18.32 0.00 0.00 3.41
98 99 3.254166 ACTTTTGAATGCGCAGATGACTT 59.746 39.130 18.32 3.24 0.00 3.01
99 100 3.921119 TTTGAATGCGCAGATGACTTT 57.079 38.095 18.32 2.34 0.00 2.66
100 101 2.905959 TGAATGCGCAGATGACTTTG 57.094 45.000 18.32 0.00 0.00 2.77
101 102 2.153645 TGAATGCGCAGATGACTTTGT 58.846 42.857 18.32 0.00 0.00 2.83
102 103 2.553602 TGAATGCGCAGATGACTTTGTT 59.446 40.909 18.32 0.00 0.00 2.83
103 104 2.624316 ATGCGCAGATGACTTTGTTG 57.376 45.000 18.32 0.00 0.00 3.33
104 105 1.592064 TGCGCAGATGACTTTGTTGA 58.408 45.000 5.66 0.00 0.00 3.18
105 106 1.264020 TGCGCAGATGACTTTGTTGAC 59.736 47.619 5.66 0.00 0.00 3.18
106 107 1.532868 GCGCAGATGACTTTGTTGACT 59.467 47.619 0.30 0.00 0.00 3.41
107 108 2.031682 GCGCAGATGACTTTGTTGACTT 60.032 45.455 0.30 0.00 0.00 3.01
108 109 3.548818 GCGCAGATGACTTTGTTGACTTT 60.549 43.478 0.30 0.00 0.00 2.66
109 110 3.970610 CGCAGATGACTTTGTTGACTTTG 59.029 43.478 0.00 0.00 0.00 2.77
110 111 4.293415 GCAGATGACTTTGTTGACTTTGG 58.707 43.478 0.00 0.00 0.00 3.28
111 112 4.036734 GCAGATGACTTTGTTGACTTTGGA 59.963 41.667 0.00 0.00 0.00 3.53
112 113 5.450412 GCAGATGACTTTGTTGACTTTGGAA 60.450 40.000 0.00 0.00 0.00 3.53
113 114 6.736794 GCAGATGACTTTGTTGACTTTGGAAT 60.737 38.462 0.00 0.00 0.00 3.01
114 115 6.639686 CAGATGACTTTGTTGACTTTGGAATG 59.360 38.462 0.00 0.00 0.00 2.67
115 116 4.681744 TGACTTTGTTGACTTTGGAATGC 58.318 39.130 0.00 0.00 0.00 3.56
116 117 3.705604 ACTTTGTTGACTTTGGAATGCG 58.294 40.909 0.00 0.00 0.00 4.73
117 118 2.132740 TTGTTGACTTTGGAATGCGC 57.867 45.000 0.00 0.00 0.00 6.09
118 119 1.028130 TGTTGACTTTGGAATGCGCA 58.972 45.000 14.96 14.96 0.00 6.09
119 120 1.001487 TGTTGACTTTGGAATGCGCAG 60.001 47.619 18.32 1.98 0.00 5.18
120 121 1.266718 GTTGACTTTGGAATGCGCAGA 59.733 47.619 18.32 0.00 0.00 4.26
121 122 1.825090 TGACTTTGGAATGCGCAGAT 58.175 45.000 18.32 7.32 0.00 2.90
122 123 1.469703 TGACTTTGGAATGCGCAGATG 59.530 47.619 18.32 4.06 0.00 2.90
123 124 1.739466 GACTTTGGAATGCGCAGATGA 59.261 47.619 18.32 0.00 0.00 2.92
124 125 2.357009 GACTTTGGAATGCGCAGATGAT 59.643 45.455 18.32 0.00 0.00 2.45
125 126 2.357009 ACTTTGGAATGCGCAGATGATC 59.643 45.455 18.32 8.72 0.00 2.92
126 127 2.336945 TTGGAATGCGCAGATGATCT 57.663 45.000 18.32 0.00 0.00 2.75
127 128 1.589803 TGGAATGCGCAGATGATCTG 58.410 50.000 18.32 17.83 46.90 2.90
139 140 5.375417 CAGATGATCTGCTACGATCTTCT 57.625 43.478 9.82 16.42 46.92 2.85
140 141 5.771469 CAGATGATCTGCTACGATCTTCTT 58.229 41.667 9.82 8.52 45.26 2.52
141 142 6.215121 CAGATGATCTGCTACGATCTTCTTT 58.785 40.000 9.82 5.63 45.26 2.52
142 143 6.700960 CAGATGATCTGCTACGATCTTCTTTT 59.299 38.462 9.82 5.18 45.26 2.27
143 144 6.700960 AGATGATCTGCTACGATCTTCTTTTG 59.299 38.462 16.42 0.00 45.26 2.44
144 145 5.111989 TGATCTGCTACGATCTTCTTTTGG 58.888 41.667 10.87 0.00 40.32 3.28
145 146 3.861840 TCTGCTACGATCTTCTTTTGGG 58.138 45.455 0.00 0.00 0.00 4.12
146 147 3.260884 TCTGCTACGATCTTCTTTTGGGT 59.739 43.478 0.00 0.00 0.00 4.51
147 148 4.003648 CTGCTACGATCTTCTTTTGGGTT 58.996 43.478 0.00 0.00 0.00 4.11
148 149 5.046878 TCTGCTACGATCTTCTTTTGGGTTA 60.047 40.000 0.00 0.00 0.00 2.85
149 150 4.933400 TGCTACGATCTTCTTTTGGGTTAC 59.067 41.667 0.00 0.00 0.00 2.50
150 151 4.331992 GCTACGATCTTCTTTTGGGTTACC 59.668 45.833 0.00 0.00 37.24 2.85
164 165 5.878406 TGGGTTACCAACATGTTTTTCAT 57.122 34.783 8.77 0.00 45.87 2.57
166 167 5.848406 GGGTTACCAACATGTTTTTCATGA 58.152 37.500 8.77 0.00 45.24 3.07
167 168 6.284459 GGGTTACCAACATGTTTTTCATGAA 58.716 36.000 8.77 3.38 45.24 2.57
168 169 6.201997 GGGTTACCAACATGTTTTTCATGAAC 59.798 38.462 8.77 6.54 45.24 3.18
169 170 7.900440 GGGTTACCAACATGTTTTTCATGAACT 60.900 37.037 8.77 0.00 45.24 3.01
179 180 8.647143 ATGTTTTTCATGAACTGTTTCGAATT 57.353 26.923 7.89 0.00 35.19 2.17
180 181 8.114359 TGTTTTTCATGAACTGTTTCGAATTC 57.886 30.769 7.89 0.00 34.04 2.17
181 182 7.757173 TGTTTTTCATGAACTGTTTCGAATTCA 59.243 29.630 7.89 12.82 35.64 2.57
182 183 8.755018 GTTTTTCATGAACTGTTTCGAATTCAT 58.245 29.630 15.61 15.61 41.37 2.57
187 188 6.370433 TGAACTGTTTCGAATTCATGAACA 57.630 33.333 11.07 11.17 34.04 3.18
188 189 6.969366 TGAACTGTTTCGAATTCATGAACAT 58.031 32.000 11.07 2.44 34.04 2.71
189 190 7.424803 TGAACTGTTTCGAATTCATGAACATT 58.575 30.769 11.07 1.63 34.04 2.71
190 191 7.920151 TGAACTGTTTCGAATTCATGAACATTT 59.080 29.630 11.07 14.87 34.04 2.32
191 192 8.647143 AACTGTTTCGAATTCATGAACATTTT 57.353 26.923 11.07 0.39 0.00 1.82
192 193 8.647143 ACTGTTTCGAATTCATGAACATTTTT 57.353 26.923 11.07 0.00 0.00 1.94
217 218 9.965748 TTTGAATTGACGAAAATTTTCAAACTC 57.034 25.926 26.20 17.34 37.01 3.01
218 219 8.694975 TGAATTGACGAAAATTTTCAAACTCA 57.305 26.923 26.20 19.16 37.01 3.41
219 220 8.591312 TGAATTGACGAAAATTTTCAAACTCAC 58.409 29.630 26.20 14.42 37.01 3.51
220 221 8.472683 AATTGACGAAAATTTTCAAACTCACA 57.527 26.923 26.20 13.56 37.01 3.58
221 222 7.875316 TTGACGAAAATTTTCAAACTCACAA 57.125 28.000 26.20 17.26 37.01 3.33
222 223 7.875316 TGACGAAAATTTTCAAACTCACAAA 57.125 28.000 26.20 1.85 37.01 2.83
223 224 7.725142 TGACGAAAATTTTCAAACTCACAAAC 58.275 30.769 26.20 0.46 37.01 2.93
224 225 7.382488 TGACGAAAATTTTCAAACTCACAAACA 59.618 29.630 26.20 9.22 37.01 2.83
225 226 8.250538 ACGAAAATTTTCAAACTCACAAACAT 57.749 26.923 26.20 0.00 37.01 2.71
226 227 8.716909 ACGAAAATTTTCAAACTCACAAACATT 58.283 25.926 26.20 0.00 37.01 2.71
227 228 9.540431 CGAAAATTTTCAAACTCACAAACATTT 57.460 25.926 26.20 0.00 37.01 2.32
267 268 8.600449 TTTTTGCCGATTCAGAACATATTTTT 57.400 26.923 0.00 0.00 0.00 1.94
268 269 9.698309 TTTTTGCCGATTCAGAACATATTTTTA 57.302 25.926 0.00 0.00 0.00 1.52
269 270 9.698309 TTTTGCCGATTCAGAACATATTTTTAA 57.302 25.926 0.00 0.00 0.00 1.52
270 271 9.698309 TTTGCCGATTCAGAACATATTTTTAAA 57.302 25.926 0.00 0.00 0.00 1.52
271 272 9.868277 TTGCCGATTCAGAACATATTTTTAAAT 57.132 25.926 0.00 0.00 0.00 1.40
272 273 9.868277 TGCCGATTCAGAACATATTTTTAAATT 57.132 25.926 0.00 0.00 0.00 1.82
329 330 9.935241 TGATTGAATTATTTTTCCCGAAATTCA 57.065 25.926 5.03 5.03 42.01 2.57
332 333 9.935241 TTGAATTATTTTTCCCGAAATTCATGA 57.065 25.926 8.98 0.00 42.75 3.07
333 334 9.935241 TGAATTATTTTTCCCGAAATTCATGAA 57.065 25.926 11.26 11.26 40.04 2.57
335 336 9.942850 AATTATTTTTCCCGAAATTCATGAACT 57.057 25.926 11.07 0.00 31.96 3.01
339 340 9.942850 ATTTTTCCCGAAATTCATGAACTATTT 57.057 25.926 11.07 7.76 0.00 1.40
340 341 9.771534 TTTTTCCCGAAATTCATGAACTATTTT 57.228 25.926 11.07 7.38 0.00 1.82
341 342 8.755696 TTTCCCGAAATTCATGAACTATTTTG 57.244 30.769 11.07 11.11 0.00 2.44
342 343 7.695480 TCCCGAAATTCATGAACTATTTTGA 57.305 32.000 11.07 4.07 0.00 2.69
343 344 8.116651 TCCCGAAATTCATGAACTATTTTGAA 57.883 30.769 11.07 1.74 33.06 2.69
344 345 8.748412 TCCCGAAATTCATGAACTATTTTGAAT 58.252 29.630 11.07 0.00 39.76 2.57
345 346 9.369904 CCCGAAATTCATGAACTATTTTGAATT 57.630 29.630 11.07 4.39 45.74 2.17
383 384 9.541143 TTCAAATCCTTAACTTTTGGAATTGAC 57.459 29.630 10.20 0.00 44.51 3.18
384 385 7.865385 TCAAATCCTTAACTTTTGGAATTGACG 59.135 33.333 7.42 0.00 41.83 4.35
385 386 7.519032 AATCCTTAACTTTTGGAATTGACGA 57.481 32.000 0.00 0.00 33.20 4.20
386 387 6.554334 TCCTTAACTTTTGGAATTGACGAG 57.446 37.500 0.00 0.00 0.00 4.18
387 388 5.048991 TCCTTAACTTTTGGAATTGACGAGC 60.049 40.000 0.00 0.00 0.00 5.03
388 389 5.278266 CCTTAACTTTTGGAATTGACGAGCA 60.278 40.000 0.00 0.00 0.00 4.26
389 390 4.853924 AACTTTTGGAATTGACGAGCAT 57.146 36.364 0.00 0.00 0.00 3.79
390 391 4.853924 ACTTTTGGAATTGACGAGCATT 57.146 36.364 0.00 0.00 0.00 3.56
391 392 5.200368 ACTTTTGGAATTGACGAGCATTT 57.800 34.783 0.00 0.00 0.00 2.32
392 393 5.600696 ACTTTTGGAATTGACGAGCATTTT 58.399 33.333 0.00 0.00 0.00 1.82
393 394 5.463061 ACTTTTGGAATTGACGAGCATTTTG 59.537 36.000 0.00 0.00 0.00 2.44
394 395 4.844998 TTGGAATTGACGAGCATTTTGA 57.155 36.364 0.00 0.00 0.00 2.69
395 396 4.844998 TGGAATTGACGAGCATTTTGAA 57.155 36.364 0.00 0.00 0.00 2.69
396 397 5.193663 TGGAATTGACGAGCATTTTGAAA 57.806 34.783 0.00 0.00 0.00 2.69
397 398 4.981674 TGGAATTGACGAGCATTTTGAAAC 59.018 37.500 0.00 0.00 0.00 2.78
398 399 5.221224 TGGAATTGACGAGCATTTTGAAACT 60.221 36.000 0.00 0.00 0.00 2.66
399 400 5.343325 GGAATTGACGAGCATTTTGAAACTC 59.657 40.000 0.00 0.00 0.00 3.01
402 403 1.241744 CGAGCATTTTGAAACTCGCG 58.758 50.000 0.00 0.00 44.56 5.87
403 404 1.136363 CGAGCATTTTGAAACTCGCGA 60.136 47.619 9.26 9.26 44.56 5.87
404 405 2.661709 CGAGCATTTTGAAACTCGCGAA 60.662 45.455 11.33 0.00 44.56 4.70
405 406 3.492313 GAGCATTTTGAAACTCGCGAAT 58.508 40.909 11.33 0.00 0.00 3.34
406 407 4.647964 GAGCATTTTGAAACTCGCGAATA 58.352 39.130 11.33 0.00 0.00 1.75
407 408 5.235305 AGCATTTTGAAACTCGCGAATAT 57.765 34.783 11.33 0.00 0.00 1.28
408 409 5.640732 AGCATTTTGAAACTCGCGAATATT 58.359 33.333 11.33 5.24 0.00 1.28
409 410 6.092748 AGCATTTTGAAACTCGCGAATATTT 58.907 32.000 11.33 11.28 0.00 1.40
410 411 6.586082 AGCATTTTGAAACTCGCGAATATTTT 59.414 30.769 11.33 7.31 0.00 1.82
411 412 7.116233 AGCATTTTGAAACTCGCGAATATTTTT 59.884 29.630 11.33 4.68 0.00 1.94
429 430 3.320673 TTTTGGGTTTGCGAACTTTGT 57.679 38.095 16.37 0.00 36.03 2.83
430 431 2.570442 TTGGGTTTGCGAACTTTGTC 57.430 45.000 16.37 0.00 36.03 3.18
431 432 1.757682 TGGGTTTGCGAACTTTGTCT 58.242 45.000 16.37 0.00 36.03 3.41
432 433 1.403679 TGGGTTTGCGAACTTTGTCTG 59.596 47.619 16.37 0.00 36.03 3.51
433 434 1.673920 GGGTTTGCGAACTTTGTCTGA 59.326 47.619 16.37 0.00 36.03 3.27
434 435 2.293399 GGGTTTGCGAACTTTGTCTGAT 59.707 45.455 16.37 0.00 36.03 2.90
435 436 3.243401 GGGTTTGCGAACTTTGTCTGATT 60.243 43.478 16.37 0.00 36.03 2.57
436 437 3.975035 GGTTTGCGAACTTTGTCTGATTC 59.025 43.478 16.37 0.00 36.03 2.52
437 438 4.497340 GGTTTGCGAACTTTGTCTGATTCA 60.497 41.667 16.37 0.00 36.03 2.57
438 439 5.215160 GTTTGCGAACTTTGTCTGATTCAT 58.785 37.500 9.73 0.00 32.91 2.57
439 440 4.408993 TGCGAACTTTGTCTGATTCATG 57.591 40.909 0.00 0.00 0.00 3.07
440 441 4.064388 TGCGAACTTTGTCTGATTCATGA 58.936 39.130 0.00 0.00 0.00 3.07
441 442 4.514816 TGCGAACTTTGTCTGATTCATGAA 59.485 37.500 11.26 11.26 0.00 2.57
442 443 4.848299 GCGAACTTTGTCTGATTCATGAAC 59.152 41.667 11.07 5.73 0.00 3.18
443 444 5.560760 GCGAACTTTGTCTGATTCATGAACA 60.561 40.000 11.07 10.02 0.00 3.18
444 445 6.605849 CGAACTTTGTCTGATTCATGAACAT 58.394 36.000 11.07 0.00 0.00 2.71
445 446 7.080099 CGAACTTTGTCTGATTCATGAACATT 58.920 34.615 11.07 0.00 0.00 2.71
446 447 7.592533 CGAACTTTGTCTGATTCATGAACATTT 59.407 33.333 11.07 0.00 0.00 2.32
447 448 9.252962 GAACTTTGTCTGATTCATGAACATTTT 57.747 29.630 11.07 0.00 0.00 1.82
448 449 9.603921 AACTTTGTCTGATTCATGAACATTTTT 57.396 25.926 11.07 0.00 0.00 1.94
475 476 8.647256 AAAATGGCCAAATATTTTCAAATCCA 57.353 26.923 10.96 0.96 32.63 3.41
476 477 8.826293 AAATGGCCAAATATTTTCAAATCCAT 57.174 26.923 10.96 3.10 30.99 3.41
477 478 8.826293 AATGGCCAAATATTTTCAAATCCATT 57.174 26.923 10.96 8.25 33.89 3.16
478 479 8.826293 ATGGCCAAATATTTTCAAATCCATTT 57.174 26.923 10.96 0.00 27.38 2.32
479 480 9.917887 ATGGCCAAATATTTTCAAATCCATTTA 57.082 25.926 10.96 0.00 27.38 1.40
480 481 9.171877 TGGCCAAATATTTTCAAATCCATTTAC 57.828 29.630 0.61 0.00 0.00 2.01
481 482 9.171877 GGCCAAATATTTTCAAATCCATTTACA 57.828 29.630 0.00 0.00 0.00 2.41
545 546 7.993821 TCAATGTAAAATGAAAGAAAACGCA 57.006 28.000 0.00 0.00 0.00 5.24
546 547 8.412608 TCAATGTAAAATGAAAGAAAACGCAA 57.587 26.923 0.00 0.00 0.00 4.85
547 548 8.324567 TCAATGTAAAATGAAAGAAAACGCAAC 58.675 29.630 0.00 0.00 0.00 4.17
548 549 7.763172 ATGTAAAATGAAAGAAAACGCAACA 57.237 28.000 0.00 0.00 0.00 3.33
549 550 7.763172 TGTAAAATGAAAGAAAACGCAACAT 57.237 28.000 0.00 0.00 0.00 2.71
550 551 8.858003 TGTAAAATGAAAGAAAACGCAACATA 57.142 26.923 0.00 0.00 0.00 2.29
551 552 9.302345 TGTAAAATGAAAGAAAACGCAACATAA 57.698 25.926 0.00 0.00 0.00 1.90
644 645 3.349488 AAAACAGAAAACCGTGCTAGC 57.651 42.857 8.10 8.10 0.00 3.42
645 646 0.865769 AACAGAAAACCGTGCTAGCG 59.134 50.000 10.77 0.00 0.00 4.26
646 647 0.032952 ACAGAAAACCGTGCTAGCGA 59.967 50.000 10.77 0.00 0.00 4.93
647 648 1.337823 ACAGAAAACCGTGCTAGCGAT 60.338 47.619 10.77 0.00 0.00 4.58
648 649 1.324736 CAGAAAACCGTGCTAGCGATC 59.675 52.381 10.77 2.30 0.00 3.69
649 650 0.297820 GAAAACCGTGCTAGCGATCG 59.702 55.000 11.69 11.69 0.00 3.69
650 651 1.082117 AAAACCGTGCTAGCGATCGG 61.082 55.000 30.17 30.17 46.98 4.18
651 652 1.940883 AAACCGTGCTAGCGATCGGA 61.941 55.000 34.94 9.10 44.86 4.55
652 653 2.353607 CCGTGCTAGCGATCGGAC 60.354 66.667 29.06 13.55 44.86 4.79
653 654 2.722548 CGTGCTAGCGATCGGACG 60.723 66.667 18.30 4.70 38.52 4.79
654 655 2.408022 GTGCTAGCGATCGGACGT 59.592 61.111 18.30 0.00 35.59 4.34
655 656 1.939785 GTGCTAGCGATCGGACGTG 60.940 63.158 18.30 0.98 35.59 4.49
656 657 3.025176 GCTAGCGATCGGACGTGC 61.025 66.667 18.30 0.00 35.59 5.34
657 658 2.353607 CTAGCGATCGGACGTGCC 60.354 66.667 18.30 0.00 35.59 5.01
658 659 3.120979 CTAGCGATCGGACGTGCCA 62.121 63.158 18.30 0.00 35.94 4.92
659 660 2.607668 CTAGCGATCGGACGTGCCAA 62.608 60.000 18.30 0.00 35.94 4.52
660 661 2.011741 TAGCGATCGGACGTGCCAAT 62.012 55.000 18.30 0.00 35.94 3.16
661 662 3.005898 CGATCGGACGTGCCAATG 58.994 61.111 7.38 0.00 35.94 2.82
662 663 2.525248 CGATCGGACGTGCCAATGG 61.525 63.158 7.38 0.00 35.94 3.16
663 664 2.124736 ATCGGACGTGCCAATGGG 60.125 61.111 0.00 0.00 35.94 4.00
687 688 4.069232 CAACCCAGGAGCGCGAGA 62.069 66.667 12.10 0.00 0.00 4.04
688 689 4.070552 AACCCAGGAGCGCGAGAC 62.071 66.667 12.10 0.00 0.00 3.36
700 701 4.966005 CGAGACGCTCTCACCAAA 57.034 55.556 13.14 0.00 43.55 3.28
701 702 3.195041 CGAGACGCTCTCACCAAAA 57.805 52.632 13.14 0.00 43.55 2.44
702 703 1.497991 CGAGACGCTCTCACCAAAAA 58.502 50.000 13.14 0.00 43.55 1.94
762 763 1.694169 AGCACCTCCCGATCCCATT 60.694 57.895 0.00 0.00 0.00 3.16
763 764 1.227973 GCACCTCCCGATCCCATTC 60.228 63.158 0.00 0.00 0.00 2.67
772 773 1.609061 CCGATCCCATTCCCAATCTCG 60.609 57.143 0.00 0.00 0.00 4.04
773 774 1.528129 GATCCCATTCCCAATCTCGC 58.472 55.000 0.00 0.00 0.00 5.03
774 775 1.072965 GATCCCATTCCCAATCTCGCT 59.927 52.381 0.00 0.00 0.00 4.93
780 782 1.267574 TTCCCAATCTCGCTCTGCCT 61.268 55.000 0.00 0.00 0.00 4.75
781 783 1.222936 CCCAATCTCGCTCTGCCTT 59.777 57.895 0.00 0.00 0.00 4.35
800 802 3.181471 CCTTGGTGCTATCTCCAGTACAG 60.181 52.174 0.00 0.00 37.20 2.74
823 832 2.198287 GCCGCCCGTGGATCTACTA 61.198 63.158 7.68 0.00 0.00 1.82
846 855 0.249868 CATCTTCGCCCGGCTTGATA 60.250 55.000 8.05 0.00 0.00 2.15
893 906 6.325596 TCTCTGTACGATGAGTTGAATTCTG 58.674 40.000 7.05 0.00 0.00 3.02
938 958 9.997482 TCTGATTTCTGTTAAATTTATTACCGC 57.003 29.630 0.00 0.00 0.00 5.68
945 965 7.279313 TCTGTTAAATTTATTACCGCTCAGGAC 59.721 37.037 0.00 0.00 45.00 3.85
948 968 6.377327 AAATTTATTACCGCTCAGGACATG 57.623 37.500 0.00 0.00 45.00 3.21
949 969 2.526304 TATTACCGCTCAGGACATGC 57.474 50.000 0.00 0.00 45.00 4.06
1029 1049 1.535462 CGGCGGTTTCTGAATCTGTTT 59.465 47.619 0.00 0.00 0.00 2.83
1037 1057 0.095935 CTGAATCTGTTTGCGGCGAG 59.904 55.000 12.98 0.00 0.00 5.03
1060 1080 2.184322 CGGGCTGCATGTACTCGT 59.816 61.111 0.50 0.00 0.00 4.18
1116 1136 0.249322 ACACGACACCGGAAGAAGTG 60.249 55.000 9.46 16.74 40.78 3.16
1117 1137 0.031585 CACGACACCGGAAGAAGTGA 59.968 55.000 9.46 0.00 40.78 3.41
1448 1474 3.998672 GGCCGTCTCCGTTCCACA 61.999 66.667 0.00 0.00 0.00 4.17
1551 1577 0.676466 CCGGCCAGCACTACAATGAA 60.676 55.000 2.24 0.00 0.00 2.57
1584 1610 1.004440 GACCTGGCAGTGTGAGGAC 60.004 63.158 14.43 6.47 0.00 3.85
1780 1820 1.275291 CCGAGCTCAACCTCTGGTTTA 59.725 52.381 15.40 0.00 44.33 2.01
1839 1879 1.754226 GATCTCTCACCTGTCCTCACC 59.246 57.143 0.00 0.00 0.00 4.02
1883 1923 2.096248 GATTTGGGCGGACAATTACCA 58.904 47.619 0.00 0.00 0.00 3.25
2056 2121 0.038166 TGTTAGCTGGGAAGGGCAAG 59.962 55.000 0.00 0.00 0.00 4.01
2136 2241 5.834742 ACTCTGAAGTCTCTATGCATCATCT 59.165 40.000 0.19 0.00 0.00 2.90
2177 2282 6.383415 CGCAGGAAGAGTATTATAAGAGACC 58.617 44.000 0.00 0.00 0.00 3.85
2178 2283 6.570764 CGCAGGAAGAGTATTATAAGAGACCC 60.571 46.154 0.00 0.00 0.00 4.46
2179 2284 6.267928 GCAGGAAGAGTATTATAAGAGACCCA 59.732 42.308 0.00 0.00 0.00 4.51
2180 2285 7.038658 GCAGGAAGAGTATTATAAGAGACCCAT 60.039 40.741 0.00 0.00 0.00 4.00
2181 2286 8.875168 CAGGAAGAGTATTATAAGAGACCCATT 58.125 37.037 0.00 0.00 0.00 3.16
2182 2287 8.875168 AGGAAGAGTATTATAAGAGACCCATTG 58.125 37.037 0.00 0.00 0.00 2.82
2183 2288 7.604545 GGAAGAGTATTATAAGAGACCCATTGC 59.395 40.741 0.00 0.00 0.00 3.56
2184 2289 7.618019 AGAGTATTATAAGAGACCCATTGCA 57.382 36.000 0.00 0.00 0.00 4.08
2185 2290 8.212259 AGAGTATTATAAGAGACCCATTGCAT 57.788 34.615 0.00 0.00 0.00 3.96
2186 2291 8.317679 AGAGTATTATAAGAGACCCATTGCATC 58.682 37.037 0.00 0.00 0.00 3.91
2187 2292 8.212259 AGTATTATAAGAGACCCATTGCATCT 57.788 34.615 0.00 0.00 0.00 2.90
2188 2293 8.664079 AGTATTATAAGAGACCCATTGCATCTT 58.336 33.333 2.36 2.36 34.71 2.40
2189 2294 9.944376 GTATTATAAGAGACCCATTGCATCTTA 57.056 33.333 6.23 6.23 37.01 2.10
2191 2296 8.908786 TTATAAGAGACCCATTGCATCTTAAG 57.091 34.615 7.55 0.00 36.40 1.85
2192 2297 5.441718 AAGAGACCCATTGCATCTTAAGA 57.558 39.130 7.82 7.82 0.00 2.10
2193 2298 4.775236 AGAGACCCATTGCATCTTAAGAC 58.225 43.478 7.48 0.00 0.00 3.01
2194 2299 4.225942 AGAGACCCATTGCATCTTAAGACA 59.774 41.667 7.48 0.00 0.00 3.41
2195 2300 4.922206 AGACCCATTGCATCTTAAGACAA 58.078 39.130 7.48 9.05 0.00 3.18
2196 2301 4.702131 AGACCCATTGCATCTTAAGACAAC 59.298 41.667 7.48 0.76 0.00 3.32
2197 2302 4.666512 ACCCATTGCATCTTAAGACAACT 58.333 39.130 7.48 0.00 0.00 3.16
2198 2303 5.079643 ACCCATTGCATCTTAAGACAACTT 58.920 37.500 7.48 0.00 39.81 2.66
2199 2304 5.183904 ACCCATTGCATCTTAAGACAACTTC 59.816 40.000 7.48 0.00 37.53 3.01
2200 2305 5.183713 CCCATTGCATCTTAAGACAACTTCA 59.816 40.000 7.48 0.00 37.53 3.02
2201 2306 6.127535 CCCATTGCATCTTAAGACAACTTCAT 60.128 38.462 7.48 0.00 37.53 2.57
2202 2307 6.971184 CCATTGCATCTTAAGACAACTTCATC 59.029 38.462 7.48 0.00 37.53 2.92
2203 2308 7.148120 CCATTGCATCTTAAGACAACTTCATCT 60.148 37.037 7.48 0.00 37.53 2.90
2204 2309 7.750229 TTGCATCTTAAGACAACTTCATCTT 57.250 32.000 7.48 0.00 38.67 2.40
2205 2310 7.750229 TGCATCTTAAGACAACTTCATCTTT 57.250 32.000 7.48 0.00 36.56 2.52
2206 2311 7.587629 TGCATCTTAAGACAACTTCATCTTTG 58.412 34.615 7.48 0.00 36.56 2.77
2207 2312 7.229306 TGCATCTTAAGACAACTTCATCTTTGT 59.771 33.333 7.48 0.00 38.67 2.83
2208 2313 8.721478 GCATCTTAAGACAACTTCATCTTTGTA 58.279 33.333 7.48 0.00 36.06 2.41
2210 2315 9.778741 ATCTTAAGACAACTTCATCTTTGTACA 57.221 29.630 7.48 0.00 36.06 2.90
2211 2316 9.778741 TCTTAAGACAACTTCATCTTTGTACAT 57.221 29.630 0.00 0.00 36.06 2.29
2213 2318 9.554395 TTAAGACAACTTCATCTTTGTACATCA 57.446 29.630 0.00 0.00 36.06 3.07
2214 2319 8.450578 AAGACAACTTCATCTTTGTACATCAA 57.549 30.769 0.00 0.00 36.06 2.57
2215 2320 8.450578 AGACAACTTCATCTTTGTACATCAAA 57.549 30.769 0.00 0.00 42.79 2.69
2216 2321 8.902806 AGACAACTTCATCTTTGTACATCAAAA 58.097 29.630 0.00 0.00 44.08 2.44
2217 2322 8.856490 ACAACTTCATCTTTGTACATCAAAAC 57.144 30.769 0.00 0.00 44.08 2.43
2218 2323 7.643764 ACAACTTCATCTTTGTACATCAAAACG 59.356 33.333 0.00 0.00 44.08 3.60
2219 2324 6.668323 ACTTCATCTTTGTACATCAAAACGG 58.332 36.000 0.00 0.00 44.08 4.44
2220 2325 6.485313 ACTTCATCTTTGTACATCAAAACGGA 59.515 34.615 0.00 0.00 44.08 4.69
2246 2351 2.030096 ACTCTCGGAAGGAACGAACTTC 60.030 50.000 9.06 9.06 42.73 3.01
2795 2924 1.004440 GAACTGCTTCCCGCTCTGT 60.004 57.895 0.00 0.00 40.11 3.41
2807 2936 3.160585 CTCTGTGCCAGTCCCCAA 58.839 61.111 2.68 0.00 32.61 4.12
2825 2954 0.687354 AAGCGAACTCCACCATCTGT 59.313 50.000 0.00 0.00 0.00 3.41
2943 3072 3.512516 GGCTGAGGTTGATGGCGC 61.513 66.667 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.729391 TTGCAATTTACTACGCACTCAATA 57.271 33.333 0.00 0.00 33.29 1.90
2 3 5.049060 ACATTGCAATTTACTACGCACTCAA 60.049 36.000 9.83 0.00 33.29 3.02
3 4 4.454161 ACATTGCAATTTACTACGCACTCA 59.546 37.500 9.83 0.00 33.29 3.41
4 5 4.969816 ACATTGCAATTTACTACGCACTC 58.030 39.130 9.83 0.00 33.29 3.51
6 7 5.025826 GGTACATTGCAATTTACTACGCAC 58.974 41.667 26.63 11.69 33.29 5.34
7 8 4.201734 CGGTACATTGCAATTTACTACGCA 60.202 41.667 26.63 0.00 0.00 5.24
8 9 4.201744 ACGGTACATTGCAATTTACTACGC 60.202 41.667 26.63 14.29 0.00 4.42
9 10 5.252583 CACGGTACATTGCAATTTACTACG 58.747 41.667 26.63 24.16 0.00 3.51
10 11 5.352016 TCCACGGTACATTGCAATTTACTAC 59.648 40.000 26.63 15.11 0.00 2.73
11 12 5.352016 GTCCACGGTACATTGCAATTTACTA 59.648 40.000 26.63 11.17 0.00 1.82
12 13 4.155280 GTCCACGGTACATTGCAATTTACT 59.845 41.667 26.63 11.94 0.00 2.24
13 14 4.155280 AGTCCACGGTACATTGCAATTTAC 59.845 41.667 22.14 22.14 0.00 2.01
14 15 4.155099 CAGTCCACGGTACATTGCAATTTA 59.845 41.667 9.83 5.03 0.00 1.40
15 16 3.057596 CAGTCCACGGTACATTGCAATTT 60.058 43.478 9.83 6.22 0.00 1.82
16 17 2.487762 CAGTCCACGGTACATTGCAATT 59.512 45.455 9.83 4.36 0.00 2.32
17 18 2.083774 CAGTCCACGGTACATTGCAAT 58.916 47.619 5.99 5.99 0.00 3.56
18 19 1.518325 CAGTCCACGGTACATTGCAA 58.482 50.000 0.00 0.00 0.00 4.08
19 20 0.321210 CCAGTCCACGGTACATTGCA 60.321 55.000 0.00 0.00 0.00 4.08
20 21 1.024579 CCCAGTCCACGGTACATTGC 61.025 60.000 0.00 0.00 0.00 3.56
21 22 0.323629 ACCCAGTCCACGGTACATTG 59.676 55.000 0.00 0.00 0.00 2.82
22 23 1.941377 TACCCAGTCCACGGTACATT 58.059 50.000 0.00 0.00 33.36 2.71
23 24 2.170012 ATACCCAGTCCACGGTACAT 57.830 50.000 0.00 0.00 37.44 2.29
24 25 1.941377 AATACCCAGTCCACGGTACA 58.059 50.000 0.00 0.00 37.44 2.90
25 26 3.004862 CAAAATACCCAGTCCACGGTAC 58.995 50.000 0.00 0.00 37.44 3.34
26 27 2.905085 TCAAAATACCCAGTCCACGGTA 59.095 45.455 0.00 0.00 38.94 4.02
27 28 1.700739 TCAAAATACCCAGTCCACGGT 59.299 47.619 0.00 0.00 36.08 4.83
28 29 2.483014 TCAAAATACCCAGTCCACGG 57.517 50.000 0.00 0.00 0.00 4.94
29 30 3.408634 ACTTCAAAATACCCAGTCCACG 58.591 45.455 0.00 0.00 0.00 4.94
30 31 3.435671 CGACTTCAAAATACCCAGTCCAC 59.564 47.826 0.00 0.00 31.83 4.02
31 32 3.071892 ACGACTTCAAAATACCCAGTCCA 59.928 43.478 0.00 0.00 31.83 4.02
32 33 3.671716 ACGACTTCAAAATACCCAGTCC 58.328 45.455 0.00 0.00 31.83 3.85
33 34 4.612939 GCAACGACTTCAAAATACCCAGTC 60.613 45.833 0.00 0.00 0.00 3.51
34 35 3.252458 GCAACGACTTCAAAATACCCAGT 59.748 43.478 0.00 0.00 0.00 4.00
35 36 3.365969 GGCAACGACTTCAAAATACCCAG 60.366 47.826 0.00 0.00 0.00 4.45
36 37 2.554893 GGCAACGACTTCAAAATACCCA 59.445 45.455 0.00 0.00 0.00 4.51
37 38 2.554893 TGGCAACGACTTCAAAATACCC 59.445 45.455 0.00 0.00 42.51 3.69
38 39 3.252458 ACTGGCAACGACTTCAAAATACC 59.748 43.478 0.00 0.00 42.51 2.73
39 40 4.483476 ACTGGCAACGACTTCAAAATAC 57.517 40.909 0.00 0.00 42.51 1.89
40 41 6.428465 TCATAACTGGCAACGACTTCAAAATA 59.572 34.615 0.00 0.00 42.51 1.40
41 42 5.240623 TCATAACTGGCAACGACTTCAAAAT 59.759 36.000 0.00 0.00 42.51 1.82
42 43 4.576873 TCATAACTGGCAACGACTTCAAAA 59.423 37.500 0.00 0.00 42.51 2.44
43 44 4.024387 GTCATAACTGGCAACGACTTCAAA 60.024 41.667 0.00 0.00 42.51 2.69
44 45 3.496884 GTCATAACTGGCAACGACTTCAA 59.503 43.478 0.00 0.00 42.51 2.69
45 46 3.064207 GTCATAACTGGCAACGACTTCA 58.936 45.455 0.00 0.00 42.51 3.02
46 47 3.064207 TGTCATAACTGGCAACGACTTC 58.936 45.455 0.00 0.00 33.02 3.01
47 48 2.806244 GTGTCATAACTGGCAACGACTT 59.194 45.455 0.00 0.00 39.07 3.01
48 49 2.037251 AGTGTCATAACTGGCAACGACT 59.963 45.455 0.00 0.00 39.07 4.18
49 50 2.413837 AGTGTCATAACTGGCAACGAC 58.586 47.619 0.00 0.00 39.07 4.34
50 51 2.831685 AGTGTCATAACTGGCAACGA 57.168 45.000 0.00 0.00 39.07 3.85
51 52 3.896648 AAAGTGTCATAACTGGCAACG 57.103 42.857 0.00 0.00 39.07 4.10
52 53 8.512138 AGTAAATAAAGTGTCATAACTGGCAAC 58.488 33.333 0.00 0.00 39.07 4.17
53 54 8.630054 AGTAAATAAAGTGTCATAACTGGCAA 57.370 30.769 0.00 0.00 39.07 4.52
54 55 8.630054 AAGTAAATAAAGTGTCATAACTGGCA 57.370 30.769 0.00 0.00 33.71 4.92
55 56 9.908152 AAAAGTAAATAAAGTGTCATAACTGGC 57.092 29.630 0.00 0.00 0.00 4.85
62 63 9.128107 CGCATTCAAAAGTAAATAAAGTGTCAT 57.872 29.630 0.00 0.00 0.00 3.06
63 64 7.114247 GCGCATTCAAAAGTAAATAAAGTGTCA 59.886 33.333 0.30 0.00 0.00 3.58
64 65 7.114247 TGCGCATTCAAAAGTAAATAAAGTGTC 59.886 33.333 5.66 0.00 0.00 3.67
65 66 6.920758 TGCGCATTCAAAAGTAAATAAAGTGT 59.079 30.769 5.66 0.00 0.00 3.55
66 67 7.325821 TCTGCGCATTCAAAAGTAAATAAAGTG 59.674 33.333 12.24 0.00 0.00 3.16
67 68 7.367285 TCTGCGCATTCAAAAGTAAATAAAGT 58.633 30.769 12.24 0.00 0.00 2.66
68 69 7.795431 TCTGCGCATTCAAAAGTAAATAAAG 57.205 32.000 12.24 0.00 0.00 1.85
69 70 8.026026 TCATCTGCGCATTCAAAAGTAAATAAA 58.974 29.630 12.24 0.00 0.00 1.40
70 71 7.484641 GTCATCTGCGCATTCAAAAGTAAATAA 59.515 33.333 12.24 0.00 0.00 1.40
71 72 6.966632 GTCATCTGCGCATTCAAAAGTAAATA 59.033 34.615 12.24 0.00 0.00 1.40
72 73 5.801947 GTCATCTGCGCATTCAAAAGTAAAT 59.198 36.000 12.24 0.00 0.00 1.40
73 74 5.048782 AGTCATCTGCGCATTCAAAAGTAAA 60.049 36.000 12.24 0.00 0.00 2.01
74 75 4.455533 AGTCATCTGCGCATTCAAAAGTAA 59.544 37.500 12.24 0.00 0.00 2.24
75 76 4.002982 AGTCATCTGCGCATTCAAAAGTA 58.997 39.130 12.24 0.00 0.00 2.24
76 77 2.816087 AGTCATCTGCGCATTCAAAAGT 59.184 40.909 12.24 0.00 0.00 2.66
77 78 3.482722 AGTCATCTGCGCATTCAAAAG 57.517 42.857 12.24 0.00 0.00 2.27
78 79 3.921119 AAGTCATCTGCGCATTCAAAA 57.079 38.095 12.24 0.00 0.00 2.44
79 80 3.004629 ACAAAGTCATCTGCGCATTCAAA 59.995 39.130 12.24 0.00 0.00 2.69
80 81 2.553602 ACAAAGTCATCTGCGCATTCAA 59.446 40.909 12.24 0.00 0.00 2.69
81 82 2.153645 ACAAAGTCATCTGCGCATTCA 58.846 42.857 12.24 0.00 0.00 2.57
82 83 2.907910 ACAAAGTCATCTGCGCATTC 57.092 45.000 12.24 0.00 0.00 2.67
83 84 2.553602 TCAACAAAGTCATCTGCGCATT 59.446 40.909 12.24 0.00 0.00 3.56
84 85 2.095567 GTCAACAAAGTCATCTGCGCAT 60.096 45.455 12.24 0.00 0.00 4.73
85 86 1.264020 GTCAACAAAGTCATCTGCGCA 59.736 47.619 10.98 10.98 0.00 6.09
86 87 1.532868 AGTCAACAAAGTCATCTGCGC 59.467 47.619 0.00 0.00 0.00 6.09
87 88 3.885484 AAGTCAACAAAGTCATCTGCG 57.115 42.857 0.00 0.00 0.00 5.18
88 89 4.036734 TCCAAAGTCAACAAAGTCATCTGC 59.963 41.667 0.00 0.00 0.00 4.26
89 90 5.756195 TCCAAAGTCAACAAAGTCATCTG 57.244 39.130 0.00 0.00 0.00 2.90
90 91 6.736794 GCATTCCAAAGTCAACAAAGTCATCT 60.737 38.462 0.00 0.00 0.00 2.90
91 92 5.403466 GCATTCCAAAGTCAACAAAGTCATC 59.597 40.000 0.00 0.00 0.00 2.92
92 93 5.291971 GCATTCCAAAGTCAACAAAGTCAT 58.708 37.500 0.00 0.00 0.00 3.06
93 94 4.681744 GCATTCCAAAGTCAACAAAGTCA 58.318 39.130 0.00 0.00 0.00 3.41
94 95 3.730715 CGCATTCCAAAGTCAACAAAGTC 59.269 43.478 0.00 0.00 0.00 3.01
95 96 3.705604 CGCATTCCAAAGTCAACAAAGT 58.294 40.909 0.00 0.00 0.00 2.66
96 97 2.472488 GCGCATTCCAAAGTCAACAAAG 59.528 45.455 0.30 0.00 0.00 2.77
97 98 2.159184 TGCGCATTCCAAAGTCAACAAA 60.159 40.909 5.66 0.00 0.00 2.83
98 99 1.406898 TGCGCATTCCAAAGTCAACAA 59.593 42.857 5.66 0.00 0.00 2.83
99 100 1.001487 CTGCGCATTCCAAAGTCAACA 60.001 47.619 12.24 0.00 0.00 3.33
100 101 1.266718 TCTGCGCATTCCAAAGTCAAC 59.733 47.619 12.24 0.00 0.00 3.18
101 102 1.603456 TCTGCGCATTCCAAAGTCAA 58.397 45.000 12.24 0.00 0.00 3.18
102 103 1.469703 CATCTGCGCATTCCAAAGTCA 59.530 47.619 12.24 0.00 0.00 3.41
103 104 1.739466 TCATCTGCGCATTCCAAAGTC 59.261 47.619 12.24 0.00 0.00 3.01
104 105 1.825090 TCATCTGCGCATTCCAAAGT 58.175 45.000 12.24 0.00 0.00 2.66
105 106 2.617308 AGATCATCTGCGCATTCCAAAG 59.383 45.455 12.24 0.00 0.00 2.77
106 107 2.356695 CAGATCATCTGCGCATTCCAAA 59.643 45.455 12.24 0.00 37.72 3.28
107 108 1.944709 CAGATCATCTGCGCATTCCAA 59.055 47.619 12.24 0.00 37.72 3.53
108 109 1.589803 CAGATCATCTGCGCATTCCA 58.410 50.000 12.24 0.00 37.72 3.53
122 123 4.509600 CCCAAAAGAAGATCGTAGCAGATC 59.490 45.833 8.28 8.28 45.45 2.75
123 124 4.080863 ACCCAAAAGAAGATCGTAGCAGAT 60.081 41.667 0.00 0.00 0.00 2.90
124 125 3.260884 ACCCAAAAGAAGATCGTAGCAGA 59.739 43.478 0.00 0.00 0.00 4.26
125 126 3.600388 ACCCAAAAGAAGATCGTAGCAG 58.400 45.455 0.00 0.00 0.00 4.24
126 127 3.695830 ACCCAAAAGAAGATCGTAGCA 57.304 42.857 0.00 0.00 0.00 3.49
127 128 4.331992 GGTAACCCAAAAGAAGATCGTAGC 59.668 45.833 0.00 0.00 0.00 3.58
128 129 5.484715 TGGTAACCCAAAAGAAGATCGTAG 58.515 41.667 0.00 0.00 37.98 3.51
129 130 5.486735 TGGTAACCCAAAAGAAGATCGTA 57.513 39.130 0.00 0.00 37.98 3.43
130 131 4.360951 TGGTAACCCAAAAGAAGATCGT 57.639 40.909 0.00 0.00 37.98 3.73
139 140 7.066284 CATGAAAAACATGTTGGTAACCCAAAA 59.934 33.333 12.82 0.00 45.54 2.44
140 141 6.540189 CATGAAAAACATGTTGGTAACCCAAA 59.460 34.615 12.82 0.00 45.54 3.28
141 142 6.240549 ATGAAAAACATGTTGGTAACCCAA 57.759 33.333 12.82 0.00 42.02 4.12
142 143 5.878406 ATGAAAAACATGTTGGTAACCCA 57.122 34.783 12.82 4.45 37.87 4.51
154 155 8.647143 AATTCGAAACAGTTCATGAAAAACAT 57.353 26.923 10.35 0.00 40.17 2.71
155 156 7.757173 TGAATTCGAAACAGTTCATGAAAAACA 59.243 29.630 10.35 1.50 32.89 2.83
156 157 8.114359 TGAATTCGAAACAGTTCATGAAAAAC 57.886 30.769 10.35 0.00 32.89 2.43
157 158 8.870160 ATGAATTCGAAACAGTTCATGAAAAA 57.130 26.923 19.01 0.00 39.20 1.94
163 164 6.969366 TGTTCATGAATTCGAAACAGTTCAT 58.031 32.000 12.12 15.61 40.78 2.57
164 165 6.370433 TGTTCATGAATTCGAAACAGTTCA 57.630 33.333 12.12 12.82 35.33 3.18
165 166 7.858052 AATGTTCATGAATTCGAAACAGTTC 57.142 32.000 12.12 1.77 0.00 3.01
166 167 8.647143 AAAATGTTCATGAATTCGAAACAGTT 57.353 26.923 18.91 18.91 0.00 3.16
167 168 8.647143 AAAAATGTTCATGAATTCGAAACAGT 57.353 26.923 12.12 15.49 0.00 3.55
191 192 9.965748 GAGTTTGAAAATTTTCGTCAATTCAAA 57.034 25.926 22.51 14.07 41.68 2.69
192 193 9.144747 TGAGTTTGAAAATTTTCGTCAATTCAA 57.855 25.926 22.51 9.41 40.01 2.69
193 194 8.591312 GTGAGTTTGAAAATTTTCGTCAATTCA 58.409 29.630 22.51 21.05 40.01 2.57
194 195 8.591312 TGTGAGTTTGAAAATTTTCGTCAATTC 58.409 29.630 22.51 19.35 40.01 2.17
195 196 8.472683 TGTGAGTTTGAAAATTTTCGTCAATT 57.527 26.923 22.51 13.34 40.01 2.32
196 197 8.472683 TTGTGAGTTTGAAAATTTTCGTCAAT 57.527 26.923 22.51 10.49 40.01 2.57
197 198 7.875316 TTGTGAGTTTGAAAATTTTCGTCAA 57.125 28.000 22.51 11.99 40.01 3.18
198 199 7.382488 TGTTTGTGAGTTTGAAAATTTTCGTCA 59.618 29.630 22.51 18.59 40.01 4.35
199 200 7.725142 TGTTTGTGAGTTTGAAAATTTTCGTC 58.275 30.769 22.51 16.73 40.01 4.20
200 201 7.644986 TGTTTGTGAGTTTGAAAATTTTCGT 57.355 28.000 22.51 9.77 40.01 3.85
201 202 9.540431 AAATGTTTGTGAGTTTGAAAATTTTCG 57.460 25.926 22.51 0.00 40.01 3.46
242 243 8.600449 AAAAATATGTTCTGAATCGGCAAAAA 57.400 26.923 0.00 0.00 0.00 1.94
243 244 9.698309 TTAAAAATATGTTCTGAATCGGCAAAA 57.302 25.926 0.00 0.00 0.00 2.44
244 245 9.698309 TTTAAAAATATGTTCTGAATCGGCAAA 57.302 25.926 0.00 0.00 0.00 3.68
245 246 9.868277 ATTTAAAAATATGTTCTGAATCGGCAA 57.132 25.926 0.00 0.00 0.00 4.52
246 247 9.868277 AATTTAAAAATATGTTCTGAATCGGCA 57.132 25.926 0.00 0.00 0.00 5.69
303 304 9.935241 TGAATTTCGGGAAAAATAATTCAATCA 57.065 25.926 0.00 0.00 40.35 2.57
306 307 9.935241 TCATGAATTTCGGGAAAAATAATTCAA 57.065 25.926 11.21 0.00 43.97 2.69
307 308 9.935241 TTCATGAATTTCGGGAAAAATAATTCA 57.065 25.926 3.38 9.99 44.51 2.57
309 310 9.942850 AGTTCATGAATTTCGGGAAAAATAATT 57.057 25.926 12.12 0.00 33.56 1.40
313 314 9.942850 AAATAGTTCATGAATTTCGGGAAAAAT 57.057 25.926 12.12 0.00 33.56 1.82
314 315 9.771534 AAAATAGTTCATGAATTTCGGGAAAAA 57.228 25.926 12.12 0.00 33.56 1.94
315 316 9.202273 CAAAATAGTTCATGAATTTCGGGAAAA 57.798 29.630 12.12 0.00 33.56 2.29
316 317 8.580720 TCAAAATAGTTCATGAATTTCGGGAAA 58.419 29.630 12.12 0.00 34.46 3.13
317 318 8.116651 TCAAAATAGTTCATGAATTTCGGGAA 57.883 30.769 12.12 0.00 0.00 3.97
318 319 7.695480 TCAAAATAGTTCATGAATTTCGGGA 57.305 32.000 12.12 5.03 0.00 5.14
319 320 8.931385 ATTCAAAATAGTTCATGAATTTCGGG 57.069 30.769 12.12 2.98 38.92 5.14
357 358 9.541143 GTCAATTCCAAAAGTTAAGGATTTGAA 57.459 29.630 22.40 12.36 45.59 2.69
358 359 7.865385 CGTCAATTCCAAAAGTTAAGGATTTGA 59.135 33.333 19.56 19.56 43.72 2.69
359 360 7.865385 TCGTCAATTCCAAAAGTTAAGGATTTG 59.135 33.333 17.05 17.05 41.04 2.32
360 361 7.947282 TCGTCAATTCCAAAAGTTAAGGATTT 58.053 30.769 0.00 0.00 0.00 2.17
361 362 7.519032 TCGTCAATTCCAAAAGTTAAGGATT 57.481 32.000 0.00 0.00 0.00 3.01
362 363 6.349363 GCTCGTCAATTCCAAAAGTTAAGGAT 60.349 38.462 0.00 0.00 0.00 3.24
363 364 5.048991 GCTCGTCAATTCCAAAAGTTAAGGA 60.049 40.000 0.00 0.00 0.00 3.36
364 365 5.154222 GCTCGTCAATTCCAAAAGTTAAGG 58.846 41.667 0.00 0.00 0.00 2.69
365 366 5.757886 TGCTCGTCAATTCCAAAAGTTAAG 58.242 37.500 0.00 0.00 0.00 1.85
366 367 5.759506 TGCTCGTCAATTCCAAAAGTTAA 57.240 34.783 0.00 0.00 0.00 2.01
367 368 5.957842 ATGCTCGTCAATTCCAAAAGTTA 57.042 34.783 0.00 0.00 0.00 2.24
368 369 4.853924 ATGCTCGTCAATTCCAAAAGTT 57.146 36.364 0.00 0.00 0.00 2.66
369 370 4.853924 AATGCTCGTCAATTCCAAAAGT 57.146 36.364 0.00 0.00 0.00 2.66
370 371 5.691305 TCAAAATGCTCGTCAATTCCAAAAG 59.309 36.000 0.00 0.00 0.00 2.27
371 372 5.595885 TCAAAATGCTCGTCAATTCCAAAA 58.404 33.333 0.00 0.00 0.00 2.44
372 373 5.193663 TCAAAATGCTCGTCAATTCCAAA 57.806 34.783 0.00 0.00 0.00 3.28
373 374 4.844998 TCAAAATGCTCGTCAATTCCAA 57.155 36.364 0.00 0.00 0.00 3.53
374 375 4.844998 TTCAAAATGCTCGTCAATTCCA 57.155 36.364 0.00 0.00 0.00 3.53
375 376 5.222631 AGTTTCAAAATGCTCGTCAATTCC 58.777 37.500 0.00 0.00 0.00 3.01
376 377 5.058492 CGAGTTTCAAAATGCTCGTCAATTC 59.942 40.000 0.00 0.00 43.79 2.17
377 378 4.911610 CGAGTTTCAAAATGCTCGTCAATT 59.088 37.500 0.00 0.00 43.79 2.32
378 379 4.466828 CGAGTTTCAAAATGCTCGTCAAT 58.533 39.130 0.00 0.00 43.79 2.57
379 380 3.872354 CGAGTTTCAAAATGCTCGTCAA 58.128 40.909 0.00 0.00 43.79 3.18
380 381 3.519908 CGAGTTTCAAAATGCTCGTCA 57.480 42.857 0.00 0.00 43.79 4.35
384 385 2.594529 TCGCGAGTTTCAAAATGCTC 57.405 45.000 3.71 0.00 0.00 4.26
385 386 3.559238 ATTCGCGAGTTTCAAAATGCT 57.441 38.095 9.59 0.00 0.00 3.79
386 387 5.932021 AATATTCGCGAGTTTCAAAATGC 57.068 34.783 10.12 0.00 0.00 3.56
408 409 3.665190 ACAAAGTTCGCAAACCCAAAAA 58.335 36.364 0.00 0.00 35.92 1.94
409 410 3.056465 AGACAAAGTTCGCAAACCCAAAA 60.056 39.130 0.00 0.00 35.92 2.44
410 411 2.494073 AGACAAAGTTCGCAAACCCAAA 59.506 40.909 0.00 0.00 35.92 3.28
411 412 2.096248 AGACAAAGTTCGCAAACCCAA 58.904 42.857 0.00 0.00 35.92 4.12
412 413 1.403679 CAGACAAAGTTCGCAAACCCA 59.596 47.619 0.00 0.00 35.92 4.51
413 414 1.673920 TCAGACAAAGTTCGCAAACCC 59.326 47.619 0.00 0.00 35.92 4.11
414 415 3.626028 ATCAGACAAAGTTCGCAAACC 57.374 42.857 0.00 0.00 35.92 3.27
415 416 4.597079 TGAATCAGACAAAGTTCGCAAAC 58.403 39.130 0.00 0.00 35.50 2.93
416 417 4.891627 TGAATCAGACAAAGTTCGCAAA 57.108 36.364 0.00 0.00 0.00 3.68
417 418 4.514816 TCATGAATCAGACAAAGTTCGCAA 59.485 37.500 0.00 0.00 0.00 4.85
418 419 4.064388 TCATGAATCAGACAAAGTTCGCA 58.936 39.130 0.00 0.00 0.00 5.10
419 420 4.668576 TCATGAATCAGACAAAGTTCGC 57.331 40.909 0.00 0.00 0.00 4.70
420 421 5.989249 TGTTCATGAATCAGACAAAGTTCG 58.011 37.500 12.12 0.00 0.00 3.95
421 422 8.807667 AAATGTTCATGAATCAGACAAAGTTC 57.192 30.769 12.12 0.00 0.00 3.01
422 423 9.603921 AAAAATGTTCATGAATCAGACAAAGTT 57.396 25.926 12.12 0.00 0.00 2.66
449 450 9.745018 TGGATTTGAAAATATTTGGCCATTTTA 57.255 25.926 6.09 0.00 35.14 1.52
450 451 8.647256 TGGATTTGAAAATATTTGGCCATTTT 57.353 26.923 6.09 10.75 37.12 1.82
451 452 8.826293 ATGGATTTGAAAATATTTGGCCATTT 57.174 26.923 6.09 2.94 27.38 2.32
452 453 8.826293 AATGGATTTGAAAATATTTGGCCATT 57.174 26.923 6.09 15.89 33.89 3.16
453 454 8.826293 AAATGGATTTGAAAATATTTGGCCAT 57.174 26.923 6.09 0.00 30.99 4.40
454 455 9.171877 GTAAATGGATTTGAAAATATTTGGCCA 57.828 29.630 0.00 0.00 0.00 5.36
455 456 9.171877 TGTAAATGGATTTGAAAATATTTGGCC 57.828 29.630 0.39 0.00 0.00 5.36
519 520 9.684448 TGCGTTTTCTTTCATTTTACATTGATA 57.316 25.926 0.00 0.00 0.00 2.15
520 521 8.586570 TGCGTTTTCTTTCATTTTACATTGAT 57.413 26.923 0.00 0.00 0.00 2.57
521 522 7.993821 TGCGTTTTCTTTCATTTTACATTGA 57.006 28.000 0.00 0.00 0.00 2.57
522 523 8.113062 TGTTGCGTTTTCTTTCATTTTACATTG 58.887 29.630 0.00 0.00 0.00 2.82
523 524 8.190888 TGTTGCGTTTTCTTTCATTTTACATT 57.809 26.923 0.00 0.00 0.00 2.71
524 525 7.763172 TGTTGCGTTTTCTTTCATTTTACAT 57.237 28.000 0.00 0.00 0.00 2.29
525 526 7.763172 ATGTTGCGTTTTCTTTCATTTTACA 57.237 28.000 0.00 0.00 0.00 2.41
623 624 3.702330 GCTAGCACGGTTTTCTGTTTTT 58.298 40.909 10.63 0.00 37.30 1.94
624 625 2.286772 CGCTAGCACGGTTTTCTGTTTT 60.287 45.455 16.45 0.00 37.30 2.43
625 626 1.263217 CGCTAGCACGGTTTTCTGTTT 59.737 47.619 16.45 0.00 37.30 2.83
626 627 0.865769 CGCTAGCACGGTTTTCTGTT 59.134 50.000 16.45 0.00 37.30 3.16
627 628 0.032952 TCGCTAGCACGGTTTTCTGT 59.967 50.000 16.45 0.00 40.48 3.41
628 629 1.324736 GATCGCTAGCACGGTTTTCTG 59.675 52.381 16.45 0.00 0.00 3.02
629 630 1.641577 GATCGCTAGCACGGTTTTCT 58.358 50.000 16.45 0.00 0.00 2.52
630 631 0.297820 CGATCGCTAGCACGGTTTTC 59.702 55.000 16.45 0.00 0.00 2.29
631 632 1.082117 CCGATCGCTAGCACGGTTTT 61.082 55.000 26.12 1.85 40.42 2.43
632 633 1.518572 CCGATCGCTAGCACGGTTT 60.519 57.895 26.12 3.08 40.42 3.27
633 634 2.104331 CCGATCGCTAGCACGGTT 59.896 61.111 26.12 4.55 40.42 4.44
634 635 2.827190 TCCGATCGCTAGCACGGT 60.827 61.111 29.93 9.50 44.72 4.83
635 636 2.353607 GTCCGATCGCTAGCACGG 60.354 66.667 27.55 27.55 45.61 4.94
636 637 2.722548 CGTCCGATCGCTAGCACG 60.723 66.667 16.45 15.96 0.00 5.34
637 638 1.939785 CACGTCCGATCGCTAGCAC 60.940 63.158 16.45 2.88 0.00 4.40
638 639 2.407616 CACGTCCGATCGCTAGCA 59.592 61.111 16.45 2.17 0.00 3.49
639 640 3.025176 GCACGTCCGATCGCTAGC 61.025 66.667 10.32 4.06 0.00 3.42
640 641 2.353607 GGCACGTCCGATCGCTAG 60.354 66.667 10.32 4.99 0.00 3.42
641 642 2.011741 ATTGGCACGTCCGATCGCTA 62.012 55.000 10.32 0.00 33.48 4.26
642 643 3.371097 ATTGGCACGTCCGATCGCT 62.371 57.895 10.32 0.00 33.48 4.93
643 644 2.890474 ATTGGCACGTCCGATCGC 60.890 61.111 10.32 0.00 33.48 4.58
644 645 2.525248 CCATTGGCACGTCCGATCG 61.525 63.158 8.51 8.51 36.80 3.69
645 646 2.180204 CCCATTGGCACGTCCGATC 61.180 63.158 0.00 0.00 36.80 3.69
646 647 2.124736 CCCATTGGCACGTCCGAT 60.125 61.111 0.00 0.00 39.65 4.18
670 671 4.069232 TCTCGCGCTCCTGGGTTG 62.069 66.667 5.56 0.00 0.00 3.77
671 672 4.070552 GTCTCGCGCTCCTGGGTT 62.071 66.667 5.56 0.00 0.00 4.11
683 684 1.497991 TTTTTGGTGAGAGCGTCTCG 58.502 50.000 9.46 0.00 46.25 4.04
699 700 0.727398 GCTCGCATCGCTAGGTTTTT 59.273 50.000 0.00 0.00 0.00 1.94
700 701 1.421410 CGCTCGCATCGCTAGGTTTT 61.421 55.000 0.00 0.00 0.00 2.43
701 702 1.878522 CGCTCGCATCGCTAGGTTT 60.879 57.895 0.00 0.00 0.00 3.27
702 703 2.278857 CGCTCGCATCGCTAGGTT 60.279 61.111 0.00 0.00 0.00 3.50
703 704 3.518998 ACGCTCGCATCGCTAGGT 61.519 61.111 0.00 0.00 0.00 3.08
737 738 2.567615 GGATCGGGAGGTGCTGTATATT 59.432 50.000 0.00 0.00 0.00 1.28
738 739 2.180276 GGATCGGGAGGTGCTGTATAT 58.820 52.381 0.00 0.00 0.00 0.86
741 742 1.760875 GGGATCGGGAGGTGCTGTA 60.761 63.158 0.00 0.00 0.00 2.74
762 763 1.267574 AAGGCAGAGCGAGATTGGGA 61.268 55.000 0.00 0.00 0.00 4.37
763 764 1.094073 CAAGGCAGAGCGAGATTGGG 61.094 60.000 0.00 0.00 0.00 4.12
772 773 0.179936 AGATAGCACCAAGGCAGAGC 59.820 55.000 0.00 0.00 35.83 4.09
773 774 1.202627 GGAGATAGCACCAAGGCAGAG 60.203 57.143 0.00 0.00 35.83 3.35
774 775 0.833287 GGAGATAGCACCAAGGCAGA 59.167 55.000 0.00 0.00 35.83 4.26
780 782 2.168521 GCTGTACTGGAGATAGCACCAA 59.831 50.000 0.00 0.00 34.24 3.67
781 783 1.757118 GCTGTACTGGAGATAGCACCA 59.243 52.381 0.00 0.00 34.64 4.17
820 829 0.460311 CCGGGCGAAGATGAAGTAGT 59.540 55.000 0.00 0.00 0.00 2.73
823 832 2.125106 GCCGGGCGAAGATGAAGT 60.125 61.111 1.81 0.00 0.00 3.01
846 855 6.551227 AGAAAAGAAATAGTGGTTGCCTTTCT 59.449 34.615 0.00 0.00 37.67 2.52
922 942 7.311364 TGTCCTGAGCGGTAATAAATTTAAC 57.689 36.000 1.21 0.00 0.00 2.01
923 943 7.468084 GCATGTCCTGAGCGGTAATAAATTTAA 60.468 37.037 1.21 0.00 0.00 1.52
926 946 4.275936 GCATGTCCTGAGCGGTAATAAATT 59.724 41.667 0.00 0.00 0.00 1.82
938 958 2.202987 GGAGGCGCATGTCCTGAG 60.203 66.667 10.83 0.00 33.24 3.35
945 965 1.608055 TGGATTAATGGAGGCGCATG 58.392 50.000 10.83 0.00 0.00 4.06
948 968 0.798776 CGATGGATTAATGGAGGCGC 59.201 55.000 0.00 0.00 0.00 6.53
949 969 1.442769 CCGATGGATTAATGGAGGCG 58.557 55.000 0.00 0.00 0.00 5.52
1060 1080 3.188100 CAGATCGAAGCGGCGCAA 61.188 61.111 35.02 16.47 0.00 4.85
1116 1136 1.078848 AACTCGCCCATGCAGAGTC 60.079 57.895 13.70 0.00 44.62 3.36
1117 1137 1.078848 GAACTCGCCCATGCAGAGT 60.079 57.895 9.27 9.27 46.10 3.24
1144 1164 9.049523 TGAATATGATGCAGAATCTCTTTGTAC 57.950 33.333 0.00 0.00 36.15 2.90
1281 1307 0.664466 TTCTGAGCTCGTCGCACTTG 60.664 55.000 9.64 0.00 42.61 3.16
1945 2010 6.627087 ATCTGAGTTTCAAGGAACCTGATA 57.373 37.500 0.00 0.00 0.00 2.15
2056 2121 1.384222 CCGTTTATCTGCCCTTGCCC 61.384 60.000 0.00 0.00 36.33 5.36
2151 2256 6.016108 GTCTCTTATAATACTCTTCCTGCGGT 60.016 42.308 0.00 0.00 0.00 5.68
2159 2264 8.034313 TGCAATGGGTCTCTTATAATACTCTT 57.966 34.615 0.00 0.00 0.00 2.85
2160 2265 7.618019 TGCAATGGGTCTCTTATAATACTCT 57.382 36.000 0.00 0.00 0.00 3.24
2161 2266 8.317679 AGATGCAATGGGTCTCTTATAATACTC 58.682 37.037 0.00 0.00 0.00 2.59
2162 2267 8.212259 AGATGCAATGGGTCTCTTATAATACT 57.788 34.615 0.00 0.00 0.00 2.12
2163 2268 8.854614 AAGATGCAATGGGTCTCTTATAATAC 57.145 34.615 0.00 0.00 0.00 1.89
2165 2270 9.512588 CTTAAGATGCAATGGGTCTCTTATAAT 57.487 33.333 0.00 0.00 30.78 1.28
2166 2271 8.713971 TCTTAAGATGCAATGGGTCTCTTATAA 58.286 33.333 0.00 0.00 30.78 0.98
2167 2272 8.150945 GTCTTAAGATGCAATGGGTCTCTTATA 58.849 37.037 8.75 0.00 30.78 0.98
2168 2273 6.995091 GTCTTAAGATGCAATGGGTCTCTTAT 59.005 38.462 8.75 0.00 30.78 1.73
2169 2274 6.070251 TGTCTTAAGATGCAATGGGTCTCTTA 60.070 38.462 8.75 0.00 0.00 2.10
2170 2275 5.189180 GTCTTAAGATGCAATGGGTCTCTT 58.811 41.667 8.75 0.00 0.00 2.85
2171 2276 4.225942 TGTCTTAAGATGCAATGGGTCTCT 59.774 41.667 8.75 0.00 0.00 3.10
2172 2277 4.517285 TGTCTTAAGATGCAATGGGTCTC 58.483 43.478 8.75 0.00 0.00 3.36
2173 2278 4.574674 TGTCTTAAGATGCAATGGGTCT 57.425 40.909 8.75 0.00 0.00 3.85
2174 2279 4.702131 AGTTGTCTTAAGATGCAATGGGTC 59.298 41.667 8.75 0.00 0.00 4.46
2175 2280 4.666512 AGTTGTCTTAAGATGCAATGGGT 58.333 39.130 8.75 0.00 0.00 4.51
2176 2281 5.183713 TGAAGTTGTCTTAAGATGCAATGGG 59.816 40.000 8.75 0.00 33.64 4.00
2177 2282 6.258230 TGAAGTTGTCTTAAGATGCAATGG 57.742 37.500 8.75 0.00 33.64 3.16
2178 2283 7.759465 AGATGAAGTTGTCTTAAGATGCAATG 58.241 34.615 8.75 0.00 33.64 2.82
2179 2284 7.934855 AGATGAAGTTGTCTTAAGATGCAAT 57.065 32.000 8.75 0.00 33.64 3.56
2180 2285 7.750229 AAGATGAAGTTGTCTTAAGATGCAA 57.250 32.000 8.75 6.44 33.15 4.08
2181 2286 7.229306 ACAAAGATGAAGTTGTCTTAAGATGCA 59.771 33.333 8.75 0.00 32.52 3.96
2182 2287 7.588512 ACAAAGATGAAGTTGTCTTAAGATGC 58.411 34.615 8.75 2.39 32.52 3.91
2184 2289 9.778741 TGTACAAAGATGAAGTTGTCTTAAGAT 57.221 29.630 8.75 0.00 38.80 2.40
2185 2290 9.778741 ATGTACAAAGATGAAGTTGTCTTAAGA 57.221 29.630 0.00 0.00 38.80 2.10
2187 2292 9.554395 TGATGTACAAAGATGAAGTTGTCTTAA 57.446 29.630 0.00 0.00 38.80 1.85
2188 2293 9.554395 TTGATGTACAAAGATGAAGTTGTCTTA 57.446 29.630 0.00 0.00 38.80 2.10
2189 2294 8.450578 TTGATGTACAAAGATGAAGTTGTCTT 57.549 30.769 0.00 0.00 38.80 3.01
2190 2295 8.450578 TTTGATGTACAAAGATGAAGTTGTCT 57.549 30.769 0.00 0.00 42.57 3.41
2191 2296 8.958043 GTTTTGATGTACAAAGATGAAGTTGTC 58.042 33.333 0.00 0.00 46.93 3.18
2192 2297 7.643764 CGTTTTGATGTACAAAGATGAAGTTGT 59.356 33.333 0.00 0.00 46.93 3.32
2193 2298 7.113404 CCGTTTTGATGTACAAAGATGAAGTTG 59.887 37.037 0.00 0.00 46.93 3.16
2194 2299 7.012894 TCCGTTTTGATGTACAAAGATGAAGTT 59.987 33.333 0.00 0.00 46.93 2.66
2195 2300 6.485313 TCCGTTTTGATGTACAAAGATGAAGT 59.515 34.615 0.00 0.00 46.93 3.01
2196 2301 6.797033 GTCCGTTTTGATGTACAAAGATGAAG 59.203 38.462 0.00 0.00 46.93 3.02
2197 2302 6.261158 TGTCCGTTTTGATGTACAAAGATGAA 59.739 34.615 0.00 0.00 46.93 2.57
2198 2303 5.760743 TGTCCGTTTTGATGTACAAAGATGA 59.239 36.000 0.00 0.00 46.93 2.92
2199 2304 5.996219 TGTCCGTTTTGATGTACAAAGATG 58.004 37.500 0.00 0.00 46.93 2.90
2200 2305 6.429692 TGATGTCCGTTTTGATGTACAAAGAT 59.570 34.615 0.00 0.00 46.93 2.40
2201 2306 5.760743 TGATGTCCGTTTTGATGTACAAAGA 59.239 36.000 0.00 0.00 46.93 2.52
2202 2307 5.851177 GTGATGTCCGTTTTGATGTACAAAG 59.149 40.000 0.00 0.00 46.93 2.77
2203 2308 5.529430 AGTGATGTCCGTTTTGATGTACAAA 59.471 36.000 0.00 0.00 45.22 2.83
2204 2309 5.060506 AGTGATGTCCGTTTTGATGTACAA 58.939 37.500 0.00 0.00 36.65 2.41
2205 2310 4.637276 AGTGATGTCCGTTTTGATGTACA 58.363 39.130 0.00 0.00 0.00 2.90
2206 2311 4.929808 AGAGTGATGTCCGTTTTGATGTAC 59.070 41.667 0.00 0.00 0.00 2.90
2207 2312 5.147330 AGAGTGATGTCCGTTTTGATGTA 57.853 39.130 0.00 0.00 0.00 2.29
2208 2313 3.997021 GAGAGTGATGTCCGTTTTGATGT 59.003 43.478 0.00 0.00 0.00 3.06
2209 2314 3.061295 CGAGAGTGATGTCCGTTTTGATG 59.939 47.826 0.00 0.00 0.00 3.07
2210 2315 3.254060 CGAGAGTGATGTCCGTTTTGAT 58.746 45.455 0.00 0.00 0.00 2.57
2211 2316 2.609491 CCGAGAGTGATGTCCGTTTTGA 60.609 50.000 0.00 0.00 0.00 2.69
2212 2317 1.726791 CCGAGAGTGATGTCCGTTTTG 59.273 52.381 0.00 0.00 0.00 2.44
2213 2318 1.616865 TCCGAGAGTGATGTCCGTTTT 59.383 47.619 0.00 0.00 0.00 2.43
2214 2319 1.254026 TCCGAGAGTGATGTCCGTTT 58.746 50.000 0.00 0.00 0.00 3.60
2215 2320 1.202582 CTTCCGAGAGTGATGTCCGTT 59.797 52.381 0.00 0.00 0.00 4.44
2216 2321 0.811915 CTTCCGAGAGTGATGTCCGT 59.188 55.000 0.00 0.00 0.00 4.69
2217 2322 0.101399 CCTTCCGAGAGTGATGTCCG 59.899 60.000 0.00 0.00 0.00 4.79
2218 2323 1.475403 TCCTTCCGAGAGTGATGTCC 58.525 55.000 0.00 0.00 0.00 4.02
2219 2324 2.732597 CGTTCCTTCCGAGAGTGATGTC 60.733 54.545 0.00 0.00 0.00 3.06
2220 2325 1.202582 CGTTCCTTCCGAGAGTGATGT 59.797 52.381 0.00 0.00 0.00 3.06
2308 2437 0.905357 GCTCCTGCCCAAGAACTAGA 59.095 55.000 0.00 0.00 0.00 2.43
2330 2459 4.415332 GACGAGCTGGTCCGCGAA 62.415 66.667 17.35 0.00 34.40 4.70
2390 2519 2.650116 GGAGTGGAAGGAGAGCGCA 61.650 63.158 11.47 0.00 0.00 6.09
2486 2615 0.317160 TGGAGATCGACAGCAACGTT 59.683 50.000 0.00 0.00 0.00 3.99
2642 2771 2.358737 CTGAACCACCCTGCCGTC 60.359 66.667 0.00 0.00 0.00 4.79
2713 2842 4.968553 TCCCCGAGGAGTTCTTGT 57.031 55.556 0.00 0.00 37.19 3.16
2795 2924 3.565214 TTCGCTTGGGGACTGGCA 61.565 61.111 0.00 0.00 0.00 4.92
2807 2936 0.036952 CACAGATGGTGGAGTTCGCT 60.037 55.000 0.00 0.00 44.04 4.93
2825 2954 4.002506 ACCGTCATGACCAGCGCA 62.003 61.111 20.03 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.