Multiple sequence alignment - TraesCS6D01G296400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G296400 chr6D 100.000 3239 0 0 1 3239 407578480 407581718 0.000000e+00 5982.0
1 TraesCS6D01G296400 chr6D 78.694 873 159 21 1213 2071 407522837 407523696 1.020000e-154 556.0
2 TraesCS6D01G296400 chr6A 93.713 1670 68 11 575 2233 553099722 553101365 0.000000e+00 2468.0
3 TraesCS6D01G296400 chr6A 78.833 874 150 29 1213 2071 553054971 553055824 1.020000e-154 556.0
4 TraesCS6D01G296400 chr6B 92.331 1669 104 18 961 2626 611698221 611699868 0.000000e+00 2351.0
5 TraesCS6D01G296400 chr6B 96.941 425 7 3 483 902 611697782 611698205 0.000000e+00 708.0
6 TraesCS6D01G296400 chr6B 79.402 869 145 27 1217 2071 611500148 611500996 1.670000e-162 582.0
7 TraesCS6D01G296400 chr6B 84.710 569 62 15 2677 3235 611700096 611700649 2.200000e-151 545.0
8 TraesCS6D01G296400 chr6B 84.262 305 41 6 2247 2547 68111808 68112109 1.140000e-74 291.0
9 TraesCS6D01G296400 chr2A 84.868 304 42 4 2247 2547 653037689 653037387 1.460000e-78 303.0
10 TraesCS6D01G296400 chr2A 83.548 310 43 7 2243 2547 497695906 497695600 1.900000e-72 283.0
11 TraesCS6D01G296400 chr2B 86.081 273 34 4 2275 2546 546231596 546231865 1.140000e-74 291.0
12 TraesCS6D01G296400 chr2B 83.062 307 44 7 2246 2547 58998387 58998084 4.120000e-69 272.0
13 TraesCS6D01G296400 chr2B 77.011 435 72 18 2641 3050 56052982 56053413 1.170000e-54 224.0
14 TraesCS6D01G296400 chr5D 83.828 303 44 5 2247 2547 535008577 535008278 1.900000e-72 283.0
15 TraesCS6D01G296400 chr3B 83.389 301 45 5 2249 2547 542514500 542514203 1.140000e-69 274.0
16 TraesCS6D01G296400 chr4D 83.113 302 48 2 2247 2547 499311935 499312234 4.120000e-69 272.0
17 TraesCS6D01G296400 chr7B 80.055 361 48 10 2898 3235 703714246 703713887 2.500000e-61 246.0
18 TraesCS6D01G296400 chr7D 76.350 537 78 28 2641 3167 617084255 617083758 3.230000e-60 243.0
19 TraesCS6D01G296400 chr4B 81.985 272 34 10 2981 3239 183489043 183489312 1.960000e-52 217.0
20 TraesCS6D01G296400 chr7A 76.190 441 51 26 2741 3166 709814311 709813910 1.980000e-42 183.0
21 TraesCS6D01G296400 chr5A 81.356 118 14 5 1212 1324 502545044 502544930 4.450000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G296400 chr6D 407578480 407581718 3238 False 5982.000000 5982 100.000000 1 3239 1 chr6D.!!$F2 3238
1 TraesCS6D01G296400 chr6D 407522837 407523696 859 False 556.000000 556 78.694000 1213 2071 1 chr6D.!!$F1 858
2 TraesCS6D01G296400 chr6A 553099722 553101365 1643 False 2468.000000 2468 93.713000 575 2233 1 chr6A.!!$F2 1658
3 TraesCS6D01G296400 chr6A 553054971 553055824 853 False 556.000000 556 78.833000 1213 2071 1 chr6A.!!$F1 858
4 TraesCS6D01G296400 chr6B 611697782 611700649 2867 False 1201.333333 2351 91.327333 483 3235 3 chr6B.!!$F3 2752
5 TraesCS6D01G296400 chr6B 611500148 611500996 848 False 582.000000 582 79.402000 1217 2071 1 chr6B.!!$F2 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 929 0.105039 CCTTGCCCGGATCAGACTAC 59.895 60.0 0.73 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2675 2716 0.032952 TGGCCACTTGTCTGTACGTC 59.967 55.0 0.0 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.771153 TTTACCCAAACTTCCCTTAAACG 57.229 39.130 0.00 0.00 0.00 3.60
45 46 3.581265 ACCCAAACTTCCCTTAAACGA 57.419 42.857 0.00 0.00 0.00 3.85
46 47 4.108501 ACCCAAACTTCCCTTAAACGAT 57.891 40.909 0.00 0.00 0.00 3.73
47 48 4.476297 ACCCAAACTTCCCTTAAACGATT 58.524 39.130 0.00 0.00 0.00 3.34
48 49 4.279922 ACCCAAACTTCCCTTAAACGATTG 59.720 41.667 0.00 0.00 0.00 2.67
49 50 4.279922 CCCAAACTTCCCTTAAACGATTGT 59.720 41.667 0.00 0.00 0.00 2.71
50 51 5.219633 CCAAACTTCCCTTAAACGATTGTG 58.780 41.667 0.00 0.00 0.00 3.33
51 52 5.009210 CCAAACTTCCCTTAAACGATTGTGA 59.991 40.000 0.00 0.00 0.00 3.58
52 53 6.294508 CCAAACTTCCCTTAAACGATTGTGAT 60.295 38.462 0.00 0.00 0.00 3.06
53 54 6.894339 AACTTCCCTTAAACGATTGTGATT 57.106 33.333 0.00 0.00 0.00 2.57
54 55 6.894339 ACTTCCCTTAAACGATTGTGATTT 57.106 33.333 0.00 0.00 0.00 2.17
55 56 7.989416 ACTTCCCTTAAACGATTGTGATTTA 57.011 32.000 0.00 0.00 0.00 1.40
56 57 7.813645 ACTTCCCTTAAACGATTGTGATTTAC 58.186 34.615 0.00 0.00 0.00 2.01
57 58 7.446013 ACTTCCCTTAAACGATTGTGATTTACA 59.554 33.333 0.00 0.00 37.56 2.41
58 59 7.931578 TCCCTTAAACGATTGTGATTTACAT 57.068 32.000 0.00 0.00 39.48 2.29
59 60 9.451002 TTCCCTTAAACGATTGTGATTTACATA 57.549 29.630 0.00 0.00 39.48 2.29
60 61 9.451002 TCCCTTAAACGATTGTGATTTACATAA 57.549 29.630 0.00 0.00 39.48 1.90
67 68 9.787532 AACGATTGTGATTTACATAAATTGAGG 57.212 29.630 0.00 0.00 39.48 3.86
68 69 8.405531 ACGATTGTGATTTACATAAATTGAGGG 58.594 33.333 0.00 0.00 39.48 4.30
69 70 8.620416 CGATTGTGATTTACATAAATTGAGGGA 58.380 33.333 0.00 0.00 39.48 4.20
70 71 9.956720 GATTGTGATTTACATAAATTGAGGGAG 57.043 33.333 0.00 0.00 39.48 4.30
71 72 7.880160 TGTGATTTACATAAATTGAGGGAGG 57.120 36.000 0.00 0.00 36.13 4.30
72 73 6.833416 TGTGATTTACATAAATTGAGGGAGGG 59.167 38.462 0.00 0.00 36.13 4.30
73 74 6.265422 GTGATTTACATAAATTGAGGGAGGGG 59.735 42.308 0.00 0.00 36.13 4.79
74 75 4.806952 TTACATAAATTGAGGGAGGGGG 57.193 45.455 0.00 0.00 0.00 5.40
75 76 2.584773 ACATAAATTGAGGGAGGGGGT 58.415 47.619 0.00 0.00 0.00 4.95
76 77 2.244769 ACATAAATTGAGGGAGGGGGTG 59.755 50.000 0.00 0.00 0.00 4.61
77 78 1.304891 TAAATTGAGGGAGGGGGTGG 58.695 55.000 0.00 0.00 0.00 4.61
78 79 1.518431 AAATTGAGGGAGGGGGTGGG 61.518 60.000 0.00 0.00 0.00 4.61
79 80 3.990141 ATTGAGGGAGGGGGTGGGG 62.990 68.421 0.00 0.00 0.00 4.96
94 95 2.940124 GGGGGTGGGGTTGAGTTT 59.060 61.111 0.00 0.00 0.00 2.66
95 96 1.533033 GGGGGTGGGGTTGAGTTTG 60.533 63.158 0.00 0.00 0.00 2.93
96 97 1.231928 GGGGTGGGGTTGAGTTTGT 59.768 57.895 0.00 0.00 0.00 2.83
97 98 0.397957 GGGGTGGGGTTGAGTTTGTT 60.398 55.000 0.00 0.00 0.00 2.83
98 99 1.133419 GGGGTGGGGTTGAGTTTGTTA 60.133 52.381 0.00 0.00 0.00 2.41
99 100 2.235891 GGGTGGGGTTGAGTTTGTTAG 58.764 52.381 0.00 0.00 0.00 2.34
100 101 2.235891 GGTGGGGTTGAGTTTGTTAGG 58.764 52.381 0.00 0.00 0.00 2.69
101 102 2.158579 GGTGGGGTTGAGTTTGTTAGGA 60.159 50.000 0.00 0.00 0.00 2.94
102 103 2.882761 GTGGGGTTGAGTTTGTTAGGAC 59.117 50.000 0.00 0.00 0.00 3.85
103 104 2.510382 TGGGGTTGAGTTTGTTAGGACA 59.490 45.455 0.00 0.00 0.00 4.02
104 105 3.139397 TGGGGTTGAGTTTGTTAGGACAT 59.861 43.478 0.00 0.00 35.29 3.06
105 106 4.149598 GGGGTTGAGTTTGTTAGGACATT 58.850 43.478 0.00 0.00 35.29 2.71
106 107 4.587262 GGGGTTGAGTTTGTTAGGACATTT 59.413 41.667 0.00 0.00 35.29 2.32
107 108 5.771165 GGGGTTGAGTTTGTTAGGACATTTA 59.229 40.000 0.00 0.00 35.29 1.40
108 109 6.294342 GGGGTTGAGTTTGTTAGGACATTTAC 60.294 42.308 0.00 0.00 35.29 2.01
109 110 6.368213 GGTTGAGTTTGTTAGGACATTTACG 58.632 40.000 0.00 0.00 35.29 3.18
110 111 6.017687 GGTTGAGTTTGTTAGGACATTTACGT 60.018 38.462 0.00 0.00 35.29 3.57
111 112 7.171337 GGTTGAGTTTGTTAGGACATTTACGTA 59.829 37.037 0.00 0.00 35.29 3.57
112 113 8.550376 GTTGAGTTTGTTAGGACATTTACGTAA 58.450 33.333 3.29 3.29 35.29 3.18
113 114 8.659925 TGAGTTTGTTAGGACATTTACGTAAA 57.340 30.769 22.12 22.12 35.29 2.01
114 115 9.107177 TGAGTTTGTTAGGACATTTACGTAAAA 57.893 29.630 23.49 8.50 35.29 1.52
127 128 8.595781 CATTTACGTAAAATGTTCGTAGCATT 57.404 30.769 23.49 0.34 46.31 3.56
128 129 9.691795 CATTTACGTAAAATGTTCGTAGCATTA 57.308 29.630 23.49 0.00 46.31 1.90
129 130 9.693157 ATTTACGTAAAATGTTCGTAGCATTAC 57.307 29.630 23.49 0.00 40.26 1.89
130 131 6.709145 ACGTAAAATGTTCGTAGCATTACA 57.291 33.333 0.00 0.00 35.73 2.41
131 132 6.527957 ACGTAAAATGTTCGTAGCATTACAC 58.472 36.000 0.00 0.00 35.73 2.90
132 133 5.665185 CGTAAAATGTTCGTAGCATTACACG 59.335 40.000 14.15 14.15 37.33 4.49
133 134 4.593597 AAATGTTCGTAGCATTACACGG 57.406 40.909 0.00 0.00 38.66 4.94
134 135 3.513680 ATGTTCGTAGCATTACACGGA 57.486 42.857 0.00 0.00 38.66 4.69
135 136 2.598589 TGTTCGTAGCATTACACGGAC 58.401 47.619 0.00 0.00 45.03 4.79
136 137 1.580704 GTTCGTAGCATTACACGGACG 59.419 52.381 0.00 0.00 36.96 4.79
137 138 0.804364 TCGTAGCATTACACGGACGT 59.196 50.000 0.00 0.00 38.66 4.34
138 139 2.006169 TCGTAGCATTACACGGACGTA 58.994 47.619 0.00 0.00 38.66 3.57
139 140 2.030823 TCGTAGCATTACACGGACGTAG 59.969 50.000 0.00 0.00 38.66 3.51
140 141 2.724349 GTAGCATTACACGGACGTAGG 58.276 52.381 0.00 0.00 0.00 3.18
141 142 1.466856 AGCATTACACGGACGTAGGA 58.533 50.000 0.00 0.00 0.00 2.94
142 143 2.029623 AGCATTACACGGACGTAGGAT 58.970 47.619 0.00 0.00 0.00 3.24
143 144 2.429610 AGCATTACACGGACGTAGGATT 59.570 45.455 0.00 0.00 0.00 3.01
144 145 3.118884 AGCATTACACGGACGTAGGATTT 60.119 43.478 0.00 0.00 0.00 2.17
145 146 3.619929 GCATTACACGGACGTAGGATTTT 59.380 43.478 0.00 0.00 0.00 1.82
146 147 4.093850 GCATTACACGGACGTAGGATTTTT 59.906 41.667 0.00 0.00 0.00 1.94
176 177 4.615588 TTTTGGGTTCAAAAGGCCTATG 57.384 40.909 5.16 9.18 44.91 2.23
177 178 3.534357 TTGGGTTCAAAAGGCCTATGA 57.466 42.857 5.16 11.82 0.00 2.15
178 179 3.534357 TGGGTTCAAAAGGCCTATGAA 57.466 42.857 23.31 23.31 0.00 2.57
179 180 3.850752 TGGGTTCAAAAGGCCTATGAAA 58.149 40.909 26.85 14.58 35.07 2.69
180 181 3.576550 TGGGTTCAAAAGGCCTATGAAAC 59.423 43.478 28.78 28.78 39.48 2.78
181 182 3.366985 GGGTTCAAAAGGCCTATGAAACG 60.367 47.826 29.09 8.82 40.77 3.60
182 183 3.366985 GGTTCAAAAGGCCTATGAAACGG 60.367 47.826 26.85 5.39 35.07 4.44
183 184 3.149005 TCAAAAGGCCTATGAAACGGT 57.851 42.857 16.64 0.00 0.00 4.83
184 185 3.492337 TCAAAAGGCCTATGAAACGGTT 58.508 40.909 16.64 0.00 0.00 4.44
185 186 4.653868 TCAAAAGGCCTATGAAACGGTTA 58.346 39.130 16.64 0.00 0.00 2.85
186 187 4.698304 TCAAAAGGCCTATGAAACGGTTAG 59.302 41.667 16.64 0.00 0.00 2.34
187 188 4.563140 AAAGGCCTATGAAACGGTTAGA 57.437 40.909 5.16 0.00 0.00 2.10
188 189 3.538634 AGGCCTATGAAACGGTTAGAC 57.461 47.619 1.29 0.00 0.00 2.59
189 190 2.169978 AGGCCTATGAAACGGTTAGACC 59.830 50.000 1.29 0.00 34.05 3.85
190 191 2.558378 GCCTATGAAACGGTTAGACCC 58.442 52.381 0.00 0.00 33.75 4.46
191 192 2.169978 GCCTATGAAACGGTTAGACCCT 59.830 50.000 0.00 0.00 33.75 4.34
192 193 3.385755 GCCTATGAAACGGTTAGACCCTA 59.614 47.826 0.00 0.00 33.75 3.53
193 194 4.141869 GCCTATGAAACGGTTAGACCCTAA 60.142 45.833 0.00 0.00 33.75 2.69
194 195 5.627503 GCCTATGAAACGGTTAGACCCTAAA 60.628 44.000 0.00 0.00 33.75 1.85
195 196 6.408869 CCTATGAAACGGTTAGACCCTAAAA 58.591 40.000 0.00 0.00 33.75 1.52
196 197 7.052248 CCTATGAAACGGTTAGACCCTAAAAT 58.948 38.462 0.00 0.00 33.75 1.82
197 198 8.206189 CCTATGAAACGGTTAGACCCTAAAATA 58.794 37.037 0.00 0.00 33.75 1.40
198 199 9.257651 CTATGAAACGGTTAGACCCTAAAATAG 57.742 37.037 0.00 0.00 33.75 1.73
199 200 6.408869 TGAAACGGTTAGACCCTAAAATAGG 58.591 40.000 0.00 0.00 45.81 2.57
210 211 3.869065 CCTAAAATAGGGTCGCTGTTGA 58.131 45.455 0.00 0.00 42.42 3.18
211 212 4.258543 CCTAAAATAGGGTCGCTGTTGAA 58.741 43.478 0.00 0.00 42.42 2.69
212 213 4.881850 CCTAAAATAGGGTCGCTGTTGAAT 59.118 41.667 0.00 0.00 42.42 2.57
213 214 6.053005 CCTAAAATAGGGTCGCTGTTGAATA 58.947 40.000 0.00 0.00 42.42 1.75
214 215 6.710744 CCTAAAATAGGGTCGCTGTTGAATAT 59.289 38.462 0.00 0.00 42.42 1.28
215 216 6.377327 AAAATAGGGTCGCTGTTGAATATG 57.623 37.500 0.00 0.00 0.00 1.78
216 217 1.668419 AGGGTCGCTGTTGAATATGC 58.332 50.000 0.00 0.00 0.00 3.14
217 218 1.210478 AGGGTCGCTGTTGAATATGCT 59.790 47.619 0.00 0.00 0.00 3.79
218 219 1.599542 GGGTCGCTGTTGAATATGCTC 59.400 52.381 0.00 0.00 0.00 4.26
219 220 1.599542 GGTCGCTGTTGAATATGCTCC 59.400 52.381 0.00 0.00 0.00 4.70
220 221 1.258982 GTCGCTGTTGAATATGCTCCG 59.741 52.381 0.00 0.00 0.00 4.63
221 222 1.136110 TCGCTGTTGAATATGCTCCGA 59.864 47.619 0.00 0.00 0.00 4.55
222 223 1.524355 CGCTGTTGAATATGCTCCGAG 59.476 52.381 0.00 0.00 0.00 4.63
223 224 1.869767 GCTGTTGAATATGCTCCGAGG 59.130 52.381 0.00 0.00 0.00 4.63
224 225 2.483714 GCTGTTGAATATGCTCCGAGGA 60.484 50.000 0.00 0.00 0.00 3.71
225 226 3.797039 CTGTTGAATATGCTCCGAGGAA 58.203 45.455 0.00 0.00 0.00 3.36
226 227 3.797039 TGTTGAATATGCTCCGAGGAAG 58.203 45.455 0.00 0.00 0.00 3.46
227 228 3.450817 TGTTGAATATGCTCCGAGGAAGA 59.549 43.478 0.00 0.00 0.00 2.87
228 229 4.081142 TGTTGAATATGCTCCGAGGAAGAA 60.081 41.667 0.00 0.00 0.00 2.52
229 230 4.060038 TGAATATGCTCCGAGGAAGAAC 57.940 45.455 0.00 0.00 0.00 3.01
230 231 3.450817 TGAATATGCTCCGAGGAAGAACA 59.549 43.478 0.00 0.00 0.00 3.18
231 232 4.101585 TGAATATGCTCCGAGGAAGAACAT 59.898 41.667 0.00 0.00 0.00 2.71
232 233 2.322355 ATGCTCCGAGGAAGAACATG 57.678 50.000 0.00 0.00 0.00 3.21
233 234 0.391661 TGCTCCGAGGAAGAACATGC 60.392 55.000 0.00 0.00 0.00 4.06
234 235 1.424493 GCTCCGAGGAAGAACATGCG 61.424 60.000 0.00 0.00 0.00 4.73
235 236 0.807667 CTCCGAGGAAGAACATGCGG 60.808 60.000 0.00 0.00 40.06 5.69
236 237 1.815421 CCGAGGAAGAACATGCGGG 60.815 63.158 0.00 0.00 35.42 6.13
237 238 1.218047 CGAGGAAGAACATGCGGGA 59.782 57.895 0.00 0.00 0.00 5.14
238 239 0.807667 CGAGGAAGAACATGCGGGAG 60.808 60.000 0.00 0.00 0.00 4.30
254 255 4.243007 CGGGAGCCATTGGATTTAAATC 57.757 45.455 18.22 18.22 34.66 2.17
255 256 3.891366 CGGGAGCCATTGGATTTAAATCT 59.109 43.478 23.85 5.95 35.73 2.40
256 257 4.261741 CGGGAGCCATTGGATTTAAATCTG 60.262 45.833 23.85 15.73 35.73 2.90
257 258 4.895297 GGGAGCCATTGGATTTAAATCTGA 59.105 41.667 23.85 14.76 35.73 3.27
258 259 5.541484 GGGAGCCATTGGATTTAAATCTGAT 59.459 40.000 23.85 16.06 35.73 2.90
259 260 6.453092 GGAGCCATTGGATTTAAATCTGATG 58.547 40.000 23.85 23.43 35.73 3.07
260 261 5.850614 AGCCATTGGATTTAAATCTGATGC 58.149 37.500 23.85 19.18 35.73 3.91
261 262 5.601313 AGCCATTGGATTTAAATCTGATGCT 59.399 36.000 23.85 20.61 35.73 3.79
262 263 5.924825 GCCATTGGATTTAAATCTGATGCTC 59.075 40.000 23.85 16.89 35.73 4.26
263 264 6.461927 GCCATTGGATTTAAATCTGATGCTCA 60.462 38.462 23.85 11.31 35.73 4.26
264 265 7.494211 CCATTGGATTTAAATCTGATGCTCAA 58.506 34.615 23.85 17.81 35.73 3.02
265 266 7.982919 CCATTGGATTTAAATCTGATGCTCAAA 59.017 33.333 23.85 1.47 35.73 2.69
266 267 9.373603 CATTGGATTTAAATCTGATGCTCAAAA 57.626 29.630 23.85 2.75 35.73 2.44
267 268 9.947433 ATTGGATTTAAATCTGATGCTCAAAAA 57.053 25.926 23.85 2.17 35.73 1.94
307 308 5.856126 TTTTTCACGCAACTCACCTATAG 57.144 39.130 0.00 0.00 0.00 1.31
308 309 4.530710 TTTCACGCAACTCACCTATAGT 57.469 40.909 0.00 0.00 0.00 2.12
309 310 3.777465 TCACGCAACTCACCTATAGTC 57.223 47.619 0.00 0.00 0.00 2.59
310 311 2.096980 TCACGCAACTCACCTATAGTCG 59.903 50.000 0.00 0.00 0.00 4.18
311 312 1.404391 ACGCAACTCACCTATAGTCGG 59.596 52.381 0.00 0.00 0.00 4.79
312 313 1.404391 CGCAACTCACCTATAGTCGGT 59.596 52.381 0.00 0.00 34.38 4.69
313 314 2.541178 CGCAACTCACCTATAGTCGGTC 60.541 54.545 0.00 0.00 30.82 4.79
314 315 2.223758 GCAACTCACCTATAGTCGGTCC 60.224 54.545 0.00 0.00 30.82 4.46
315 316 3.021695 CAACTCACCTATAGTCGGTCCA 58.978 50.000 0.00 0.00 30.82 4.02
316 317 2.652590 ACTCACCTATAGTCGGTCCAC 58.347 52.381 0.00 0.00 30.82 4.02
317 318 2.025605 ACTCACCTATAGTCGGTCCACA 60.026 50.000 0.00 0.00 30.82 4.17
318 319 3.223435 CTCACCTATAGTCGGTCCACAT 58.777 50.000 0.00 0.00 30.82 3.21
319 320 3.637229 CTCACCTATAGTCGGTCCACATT 59.363 47.826 0.00 0.00 30.82 2.71
320 321 4.795469 TCACCTATAGTCGGTCCACATTA 58.205 43.478 0.00 0.00 30.82 1.90
321 322 5.202765 TCACCTATAGTCGGTCCACATTAA 58.797 41.667 0.00 0.00 30.82 1.40
322 323 5.068198 TCACCTATAGTCGGTCCACATTAAC 59.932 44.000 0.00 0.00 30.82 2.01
323 324 4.343239 ACCTATAGTCGGTCCACATTAACC 59.657 45.833 0.00 0.00 0.00 2.85
324 325 4.342951 CCTATAGTCGGTCCACATTAACCA 59.657 45.833 0.00 0.00 35.13 3.67
325 326 2.467566 AGTCGGTCCACATTAACCAC 57.532 50.000 0.00 0.00 35.13 4.16
326 327 1.695242 AGTCGGTCCACATTAACCACA 59.305 47.619 0.00 0.00 35.13 4.17
327 328 2.073816 GTCGGTCCACATTAACCACAG 58.926 52.381 0.00 0.00 35.13 3.66
328 329 1.695242 TCGGTCCACATTAACCACAGT 59.305 47.619 0.00 0.00 35.13 3.55
329 330 1.804151 CGGTCCACATTAACCACAGTG 59.196 52.381 0.00 0.00 35.13 3.66
332 333 0.521291 CCACATTAACCACAGTGGCG 59.479 55.000 20.48 5.81 44.25 5.69
333 334 1.234821 CACATTAACCACAGTGGCGT 58.765 50.000 20.48 10.51 42.67 5.68
334 335 1.069296 CACATTAACCACAGTGGCGTG 60.069 52.381 20.48 14.43 42.67 5.34
335 336 1.234821 CATTAACCACAGTGGCGTGT 58.765 50.000 20.48 5.25 42.67 4.49
336 337 1.069296 CATTAACCACAGTGGCGTGTG 60.069 52.381 20.48 10.05 46.32 3.82
341 342 2.828868 ACAGTGGCGTGTGACCAT 59.171 55.556 0.00 0.00 39.95 3.55
342 343 1.148273 ACAGTGGCGTGTGACCATT 59.852 52.632 0.00 0.00 39.95 3.16
343 344 1.575922 CAGTGGCGTGTGACCATTG 59.424 57.895 0.00 0.00 39.95 2.82
344 345 0.884259 CAGTGGCGTGTGACCATTGA 60.884 55.000 0.00 0.00 45.16 2.57
345 346 0.179032 AGTGGCGTGTGACCATTGAA 60.179 50.000 0.00 0.00 39.95 2.69
346 347 0.665835 GTGGCGTGTGACCATTGAAA 59.334 50.000 0.00 0.00 39.95 2.69
347 348 1.269448 GTGGCGTGTGACCATTGAAAT 59.731 47.619 0.00 0.00 39.95 2.17
348 349 2.486203 GTGGCGTGTGACCATTGAAATA 59.514 45.455 0.00 0.00 39.95 1.40
349 350 2.486203 TGGCGTGTGACCATTGAAATAC 59.514 45.455 0.00 0.00 30.29 1.89
350 351 2.747446 GGCGTGTGACCATTGAAATACT 59.253 45.455 0.00 0.00 0.00 2.12
351 352 3.190535 GGCGTGTGACCATTGAAATACTT 59.809 43.478 0.00 0.00 0.00 2.24
352 353 4.320935 GGCGTGTGACCATTGAAATACTTT 60.321 41.667 0.00 0.00 0.00 2.66
353 354 4.616802 GCGTGTGACCATTGAAATACTTTG 59.383 41.667 0.00 0.00 0.00 2.77
354 355 5.757886 CGTGTGACCATTGAAATACTTTGT 58.242 37.500 0.00 0.00 0.00 2.83
355 356 5.624900 CGTGTGACCATTGAAATACTTTGTG 59.375 40.000 0.00 0.00 0.00 3.33
356 357 5.402270 GTGTGACCATTGAAATACTTTGTGC 59.598 40.000 0.00 0.00 0.00 4.57
357 358 4.616802 GTGACCATTGAAATACTTTGTGCG 59.383 41.667 0.00 0.00 0.00 5.34
358 359 4.517075 TGACCATTGAAATACTTTGTGCGA 59.483 37.500 0.00 0.00 0.00 5.10
359 360 5.009110 TGACCATTGAAATACTTTGTGCGAA 59.991 36.000 0.00 0.00 0.00 4.70
360 361 5.837437 ACCATTGAAATACTTTGTGCGAAA 58.163 33.333 0.00 0.00 0.00 3.46
361 362 6.276847 ACCATTGAAATACTTTGTGCGAAAA 58.723 32.000 0.00 0.00 0.00 2.29
362 363 6.928492 ACCATTGAAATACTTTGTGCGAAAAT 59.072 30.769 0.00 0.00 0.00 1.82
363 364 7.440856 ACCATTGAAATACTTTGTGCGAAAATT 59.559 29.630 0.00 0.00 0.00 1.82
364 365 7.951565 CCATTGAAATACTTTGTGCGAAAATTC 59.048 33.333 0.00 0.00 0.00 2.17
365 366 7.993821 TTGAAATACTTTGTGCGAAAATTCA 57.006 28.000 0.00 0.00 0.00 2.57
366 367 7.993821 TGAAATACTTTGTGCGAAAATTCAA 57.006 28.000 0.00 0.00 0.00 2.69
367 368 8.412608 TGAAATACTTTGTGCGAAAATTCAAA 57.587 26.923 0.00 0.00 0.00 2.69
368 369 8.873830 TGAAATACTTTGTGCGAAAATTCAAAA 58.126 25.926 0.00 0.00 31.07 2.44
369 370 9.695884 GAAATACTTTGTGCGAAAATTCAAAAA 57.304 25.926 0.00 0.00 31.07 1.94
370 371 9.701355 AAATACTTTGTGCGAAAATTCAAAAAG 57.299 25.926 6.15 6.15 31.07 2.27
371 372 6.959671 ACTTTGTGCGAAAATTCAAAAAGA 57.040 29.167 12.25 0.00 31.07 2.52
372 373 7.357951 ACTTTGTGCGAAAATTCAAAAAGAA 57.642 28.000 12.25 0.00 41.28 2.52
373 374 7.455447 ACTTTGTGCGAAAATTCAAAAAGAAG 58.545 30.769 12.25 0.55 40.15 2.85
374 375 7.330700 ACTTTGTGCGAAAATTCAAAAAGAAGA 59.669 29.630 12.25 0.00 40.15 2.87
375 376 7.588143 TTGTGCGAAAATTCAAAAAGAAGAA 57.412 28.000 0.00 0.00 40.15 2.52
376 377 7.588143 TGTGCGAAAATTCAAAAAGAAGAAA 57.412 28.000 0.00 0.00 40.15 2.52
377 378 8.023050 TGTGCGAAAATTCAAAAAGAAGAAAA 57.977 26.923 0.00 0.00 40.15 2.29
378 379 7.954786 TGTGCGAAAATTCAAAAAGAAGAAAAC 59.045 29.630 0.00 0.00 40.15 2.43
379 380 7.954786 GTGCGAAAATTCAAAAAGAAGAAAACA 59.045 29.630 0.00 0.00 40.15 2.83
380 381 7.954786 TGCGAAAATTCAAAAAGAAGAAAACAC 59.045 29.630 0.00 0.00 40.15 3.32
381 382 7.425309 GCGAAAATTCAAAAAGAAGAAAACACC 59.575 33.333 0.00 0.00 40.15 4.16
382 383 8.655970 CGAAAATTCAAAAAGAAGAAAACACCT 58.344 29.630 0.00 0.00 40.15 4.00
385 386 8.846943 AATTCAAAAAGAAGAAAACACCTTGT 57.153 26.923 0.00 0.00 40.15 3.16
386 387 7.650834 TTCAAAAAGAAGAAAACACCTTGTG 57.349 32.000 0.00 0.00 39.75 3.33
387 388 5.637387 TCAAAAAGAAGAAAACACCTTGTGC 59.363 36.000 0.00 0.00 36.98 4.57
388 389 4.799564 AAAGAAGAAAACACCTTGTGCA 57.200 36.364 0.00 0.00 36.98 4.57
389 390 4.799564 AAGAAGAAAACACCTTGTGCAA 57.200 36.364 0.00 0.00 36.98 4.08
390 391 4.799564 AGAAGAAAACACCTTGTGCAAA 57.200 36.364 0.00 0.00 36.98 3.68
391 392 5.343307 AGAAGAAAACACCTTGTGCAAAT 57.657 34.783 0.00 0.00 36.98 2.32
392 393 5.733676 AGAAGAAAACACCTTGTGCAAATT 58.266 33.333 0.00 0.00 36.98 1.82
393 394 6.872920 AGAAGAAAACACCTTGTGCAAATTA 58.127 32.000 0.00 0.00 36.98 1.40
394 395 6.756542 AGAAGAAAACACCTTGTGCAAATTAC 59.243 34.615 0.00 0.00 36.98 1.89
395 396 5.971763 AGAAAACACCTTGTGCAAATTACA 58.028 33.333 0.00 0.00 36.98 2.41
396 397 6.042143 AGAAAACACCTTGTGCAAATTACAG 58.958 36.000 0.00 0.00 36.98 2.74
397 398 5.337578 AAACACCTTGTGCAAATTACAGT 57.662 34.783 0.00 0.00 36.98 3.55
398 399 6.458232 AAACACCTTGTGCAAATTACAGTA 57.542 33.333 0.00 0.00 36.98 2.74
399 400 5.689383 ACACCTTGTGCAAATTACAGTAG 57.311 39.130 0.00 0.00 36.98 2.57
400 401 5.130350 ACACCTTGTGCAAATTACAGTAGT 58.870 37.500 0.00 0.00 36.98 2.73
401 402 5.238650 ACACCTTGTGCAAATTACAGTAGTC 59.761 40.000 0.00 0.00 36.98 2.59
402 403 4.760204 ACCTTGTGCAAATTACAGTAGTCC 59.240 41.667 0.00 0.00 0.00 3.85
403 404 4.156008 CCTTGTGCAAATTACAGTAGTCCC 59.844 45.833 0.00 0.00 0.00 4.46
404 405 3.331150 TGTGCAAATTACAGTAGTCCCG 58.669 45.455 0.00 0.00 0.00 5.14
405 406 3.244284 TGTGCAAATTACAGTAGTCCCGT 60.244 43.478 0.00 0.00 0.00 5.28
406 407 4.021280 TGTGCAAATTACAGTAGTCCCGTA 60.021 41.667 0.00 0.00 0.00 4.02
407 408 4.931002 GTGCAAATTACAGTAGTCCCGTAA 59.069 41.667 0.00 0.00 0.00 3.18
408 409 4.931002 TGCAAATTACAGTAGTCCCGTAAC 59.069 41.667 0.00 0.00 0.00 2.50
409 410 4.330894 GCAAATTACAGTAGTCCCGTAACC 59.669 45.833 0.00 0.00 0.00 2.85
410 411 4.743057 AATTACAGTAGTCCCGTAACCC 57.257 45.455 0.00 0.00 0.00 4.11
411 412 1.750193 TACAGTAGTCCCGTAACCCG 58.250 55.000 0.00 0.00 0.00 5.28
412 413 0.251341 ACAGTAGTCCCGTAACCCGT 60.251 55.000 0.00 0.00 33.66 5.28
413 414 0.890683 CAGTAGTCCCGTAACCCGTT 59.109 55.000 0.00 0.00 33.66 4.44
414 415 1.273327 CAGTAGTCCCGTAACCCGTTT 59.727 52.381 0.00 0.00 33.66 3.60
415 416 2.491693 CAGTAGTCCCGTAACCCGTTTA 59.508 50.000 0.00 0.00 33.66 2.01
416 417 2.492088 AGTAGTCCCGTAACCCGTTTAC 59.508 50.000 0.00 0.00 37.33 2.01
417 418 0.608130 AGTCCCGTAACCCGTTTACC 59.392 55.000 0.01 0.00 37.38 2.85
418 419 0.320050 GTCCCGTAACCCGTTTACCA 59.680 55.000 0.01 0.00 37.38 3.25
419 420 0.320050 TCCCGTAACCCGTTTACCAC 59.680 55.000 0.01 0.00 37.38 4.16
427 428 2.735478 CGTTTACCACGGCGAGCA 60.735 61.111 16.62 0.00 45.89 4.26
428 429 2.311701 CGTTTACCACGGCGAGCAA 61.312 57.895 16.62 0.00 45.89 3.91
429 430 1.833434 CGTTTACCACGGCGAGCAAA 61.833 55.000 16.62 6.06 45.89 3.68
430 431 0.519961 GTTTACCACGGCGAGCAAAT 59.480 50.000 16.62 0.00 0.00 2.32
431 432 0.800012 TTTACCACGGCGAGCAAATC 59.200 50.000 16.62 0.00 0.00 2.17
432 433 0.320858 TTACCACGGCGAGCAAATCA 60.321 50.000 16.62 0.00 0.00 2.57
433 434 1.017177 TACCACGGCGAGCAAATCAC 61.017 55.000 16.62 0.00 0.00 3.06
434 435 2.034879 CCACGGCGAGCAAATCACT 61.035 57.895 16.62 0.00 0.00 3.41
435 436 1.421485 CACGGCGAGCAAATCACTC 59.579 57.895 16.62 0.00 0.00 3.51
436 437 1.741770 ACGGCGAGCAAATCACTCC 60.742 57.895 16.62 0.00 0.00 3.85
437 438 2.802667 CGGCGAGCAAATCACTCCG 61.803 63.158 0.00 0.00 0.00 4.63
438 439 1.741770 GGCGAGCAAATCACTCCGT 60.742 57.895 0.00 0.00 0.00 4.69
439 440 1.696832 GGCGAGCAAATCACTCCGTC 61.697 60.000 0.00 0.00 0.00 4.79
440 441 0.737715 GCGAGCAAATCACTCCGTCT 60.738 55.000 0.00 0.00 0.00 4.18
441 442 1.469251 GCGAGCAAATCACTCCGTCTA 60.469 52.381 0.00 0.00 0.00 2.59
442 443 2.186076 CGAGCAAATCACTCCGTCTAC 58.814 52.381 0.00 0.00 0.00 2.59
443 444 2.159366 CGAGCAAATCACTCCGTCTACT 60.159 50.000 0.00 0.00 0.00 2.57
444 445 3.182967 GAGCAAATCACTCCGTCTACTG 58.817 50.000 0.00 0.00 0.00 2.74
445 446 2.826128 AGCAAATCACTCCGTCTACTGA 59.174 45.455 0.00 0.00 0.00 3.41
446 447 2.924290 GCAAATCACTCCGTCTACTGAC 59.076 50.000 0.00 0.00 39.70 3.51
447 448 3.512680 CAAATCACTCCGTCTACTGACC 58.487 50.000 0.00 0.00 39.94 4.02
448 449 2.509166 ATCACTCCGTCTACTGACCA 57.491 50.000 0.00 0.00 39.94 4.02
449 450 1.822506 TCACTCCGTCTACTGACCAG 58.177 55.000 0.00 0.00 39.94 4.00
450 451 0.171455 CACTCCGTCTACTGACCAGC 59.829 60.000 0.00 0.00 39.94 4.85
451 452 0.966370 ACTCCGTCTACTGACCAGCC 60.966 60.000 0.00 0.00 39.94 4.85
452 453 0.965866 CTCCGTCTACTGACCAGCCA 60.966 60.000 0.00 0.00 39.94 4.75
453 454 0.541063 TCCGTCTACTGACCAGCCAA 60.541 55.000 0.00 0.00 39.94 4.52
454 455 0.389948 CCGTCTACTGACCAGCCAAC 60.390 60.000 0.00 0.00 39.94 3.77
455 456 0.317160 CGTCTACTGACCAGCCAACA 59.683 55.000 0.00 0.00 39.94 3.33
456 457 1.797025 GTCTACTGACCAGCCAACAC 58.203 55.000 0.00 0.00 37.24 3.32
457 458 1.070134 GTCTACTGACCAGCCAACACA 59.930 52.381 0.00 0.00 37.24 3.72
458 459 1.765904 TCTACTGACCAGCCAACACAA 59.234 47.619 0.00 0.00 0.00 3.33
459 460 1.873591 CTACTGACCAGCCAACACAAC 59.126 52.381 0.00 0.00 0.00 3.32
460 461 1.095228 ACTGACCAGCCAACACAACG 61.095 55.000 0.00 0.00 0.00 4.10
461 462 1.785041 CTGACCAGCCAACACAACGG 61.785 60.000 0.00 0.00 0.00 4.44
462 463 1.525077 GACCAGCCAACACAACGGA 60.525 57.895 0.00 0.00 0.00 4.69
463 464 0.889186 GACCAGCCAACACAACGGAT 60.889 55.000 0.00 0.00 0.00 4.18
464 465 0.398696 ACCAGCCAACACAACGGATA 59.601 50.000 0.00 0.00 0.00 2.59
465 466 0.802494 CCAGCCAACACAACGGATAC 59.198 55.000 0.00 0.00 0.00 2.24
466 467 1.518325 CAGCCAACACAACGGATACA 58.482 50.000 0.00 0.00 0.00 2.29
467 468 1.196808 CAGCCAACACAACGGATACAC 59.803 52.381 0.00 0.00 0.00 2.90
468 469 1.071699 AGCCAACACAACGGATACACT 59.928 47.619 0.00 0.00 0.00 3.55
469 470 2.300723 AGCCAACACAACGGATACACTA 59.699 45.455 0.00 0.00 0.00 2.74
470 471 2.671396 GCCAACACAACGGATACACTAG 59.329 50.000 0.00 0.00 0.00 2.57
471 472 3.863400 GCCAACACAACGGATACACTAGT 60.863 47.826 0.00 0.00 0.00 2.57
472 473 4.312443 CCAACACAACGGATACACTAGTT 58.688 43.478 0.00 0.00 0.00 2.24
473 474 5.472148 CCAACACAACGGATACACTAGTTA 58.528 41.667 0.00 0.00 0.00 2.24
474 475 5.346822 CCAACACAACGGATACACTAGTTAC 59.653 44.000 0.00 0.00 0.00 2.50
475 476 5.710513 ACACAACGGATACACTAGTTACA 57.289 39.130 0.00 0.00 0.00 2.41
476 477 6.276832 ACACAACGGATACACTAGTTACAT 57.723 37.500 0.00 0.00 0.00 2.29
477 478 6.694447 ACACAACGGATACACTAGTTACATT 58.306 36.000 0.00 0.00 0.00 2.71
478 479 6.810182 ACACAACGGATACACTAGTTACATTC 59.190 38.462 0.00 0.00 0.00 2.67
479 480 7.033791 CACAACGGATACACTAGTTACATTCT 58.966 38.462 0.00 0.00 0.00 2.40
480 481 7.220300 CACAACGGATACACTAGTTACATTCTC 59.780 40.741 0.00 0.00 0.00 2.87
481 482 6.388435 ACGGATACACTAGTTACATTCTCC 57.612 41.667 0.00 0.00 0.00 3.71
508 509 3.142393 CCGGCCATGACTAGGGAG 58.858 66.667 2.24 0.00 0.00 4.30
631 636 1.676967 CCAAAGCTGACCCTCTGCC 60.677 63.158 0.00 0.00 41.50 4.85
897 903 4.483243 CCACGCCATACCGCCCTT 62.483 66.667 0.00 0.00 0.00 3.95
898 904 3.202001 CACGCCATACCGCCCTTG 61.202 66.667 0.00 0.00 0.00 3.61
911 927 2.370445 CCCTTGCCCGGATCAGACT 61.370 63.158 0.73 0.00 0.00 3.24
912 928 1.048724 CCCTTGCCCGGATCAGACTA 61.049 60.000 0.73 0.00 0.00 2.59
913 929 0.105039 CCTTGCCCGGATCAGACTAC 59.895 60.000 0.73 0.00 0.00 2.73
924 940 2.509336 AGACTACATGCCGCACGC 60.509 61.111 0.00 0.00 38.31 5.34
939 955 4.143333 CGCAGGACGGTAGGGGTG 62.143 72.222 0.00 0.00 38.44 4.61
940 956 3.001406 GCAGGACGGTAGGGGTGT 61.001 66.667 0.00 0.00 0.00 4.16
946 962 1.997928 GACGGTAGGGGTGTACGAGC 61.998 65.000 0.00 0.00 0.00 5.03
1029 1045 3.818787 GCCATGAGCGGGTGCAAG 61.819 66.667 0.00 0.00 46.23 4.01
1050 1066 0.107017 CCACTCATCCCATCACCACC 60.107 60.000 0.00 0.00 0.00 4.61
1069 1085 0.317269 CGCACCAAGTCACAAGCAAG 60.317 55.000 0.00 0.00 0.00 4.01
1120 1136 2.247637 TCGTAGATCGCAAGTGTTTCG 58.752 47.619 0.00 0.00 39.67 3.46
1127 1143 1.062880 TCGCAAGTGTTTCGTTTCCAC 59.937 47.619 0.00 0.00 39.48 4.02
1169 1186 1.600957 CAATGGCTACGATTGCTCTGG 59.399 52.381 0.00 0.00 0.00 3.86
1170 1187 0.833287 ATGGCTACGATTGCTCTGGT 59.167 50.000 0.00 0.00 0.00 4.00
1171 1188 1.480789 TGGCTACGATTGCTCTGGTA 58.519 50.000 0.00 0.00 0.00 3.25
1172 1189 1.409064 TGGCTACGATTGCTCTGGTAG 59.591 52.381 0.00 4.64 36.35 3.18
1381 1398 1.154093 CGTCTCGCTAAACTCCGCA 60.154 57.895 0.00 0.00 0.00 5.69
1384 1401 1.215647 CTCGCTAAACTCCGCACCT 59.784 57.895 0.00 0.00 0.00 4.00
1385 1402 1.078759 CTCGCTAAACTCCGCACCTG 61.079 60.000 0.00 0.00 0.00 4.00
2113 2133 3.829044 TCCATCCGGGCACGTACG 61.829 66.667 15.01 15.01 38.78 3.67
2169 2189 5.120399 AGTGTAACGTGTTGGAAGAAATGA 58.880 37.500 0.00 0.00 45.86 2.57
2198 2218 5.524281 TGCTTCGTTCGTTTATATTGGCATA 59.476 36.000 0.00 0.00 0.00 3.14
2199 2219 6.037281 TGCTTCGTTCGTTTATATTGGCATAA 59.963 34.615 0.00 0.00 0.00 1.90
2221 2242 0.177141 TCCGGCCCATAAGAACTTCG 59.823 55.000 0.00 0.00 0.00 3.79
2271 2292 3.302365 CCAATGTGTGGTTTGATGGTC 57.698 47.619 0.00 0.00 43.20 4.02
2274 2295 1.979855 TGTGTGGTTTGATGGTCAGG 58.020 50.000 0.00 0.00 0.00 3.86
2290 2311 2.509964 GTCAGGGGGACATTGTTATCCT 59.490 50.000 0.00 0.00 46.19 3.24
2294 2315 3.138468 AGGGGGACATTGTTATCCTTAGC 59.862 47.826 0.00 0.00 35.15 3.09
2295 2316 3.487372 GGGGACATTGTTATCCTTAGCC 58.513 50.000 0.00 0.00 35.15 3.93
2301 2322 4.079212 ACATTGTTATCCTTAGCCCACCAT 60.079 41.667 0.00 0.00 0.00 3.55
2303 2324 5.718801 TTGTTATCCTTAGCCCACCATTA 57.281 39.130 0.00 0.00 0.00 1.90
2306 2327 6.678547 TGTTATCCTTAGCCCACCATTATTT 58.321 36.000 0.00 0.00 0.00 1.40
2312 2333 6.069323 TCCTTAGCCCACCATTATTTAAGTCA 60.069 38.462 0.00 0.00 0.00 3.41
2315 2336 4.895297 AGCCCACCATTATTTAAGTCATGG 59.105 41.667 9.08 9.08 41.85 3.66
2323 2344 2.177394 TTTAAGTCATGGTGCTCGCA 57.823 45.000 0.00 0.00 0.00 5.10
2330 2351 3.696051 AGTCATGGTGCTCGCATTATTTT 59.304 39.130 0.00 0.00 0.00 1.82
2333 2354 4.157472 TCATGGTGCTCGCATTATTTTTGA 59.843 37.500 0.00 0.00 0.00 2.69
2360 2381 2.031258 TTAGGATTTTCGGCGATGCA 57.969 45.000 11.76 0.00 0.00 3.96
2361 2382 1.295792 TAGGATTTTCGGCGATGCAC 58.704 50.000 11.76 3.20 0.00 4.57
2378 2399 1.280421 GCACTTTCAGTGGGAGGAGAT 59.720 52.381 6.05 0.00 46.01 2.75
2379 2400 2.938756 GCACTTTCAGTGGGAGGAGATG 60.939 54.545 6.05 0.00 46.01 2.90
2380 2401 2.304180 CACTTTCAGTGGGAGGAGATGT 59.696 50.000 0.00 0.00 42.35 3.06
2382 2403 3.008485 ACTTTCAGTGGGAGGAGATGTTC 59.992 47.826 0.00 0.00 0.00 3.18
2385 2406 2.568956 TCAGTGGGAGGAGATGTTCTTG 59.431 50.000 0.00 0.00 0.00 3.02
2386 2407 2.304180 CAGTGGGAGGAGATGTTCTTGT 59.696 50.000 0.00 0.00 0.00 3.16
2387 2408 2.569404 AGTGGGAGGAGATGTTCTTGTC 59.431 50.000 0.00 0.00 0.00 3.18
2388 2409 1.550524 TGGGAGGAGATGTTCTTGTCG 59.449 52.381 0.00 0.00 0.00 4.35
2389 2410 1.825474 GGGAGGAGATGTTCTTGTCGA 59.175 52.381 0.00 0.00 0.00 4.20
2390 2411 2.432510 GGGAGGAGATGTTCTTGTCGAT 59.567 50.000 0.00 0.00 0.00 3.59
2391 2412 3.452474 GGAGGAGATGTTCTTGTCGATG 58.548 50.000 0.00 0.00 0.00 3.84
2406 2427 2.827190 ATGACGAGGCGCCTACGA 60.827 61.111 37.37 24.57 43.93 3.43
2413 2434 0.595310 GAGGCGCCTACGATGACTTC 60.595 60.000 32.97 9.38 43.93 3.01
2431 2452 9.994432 GATGACTTCGTAAATCTCAAAATGATT 57.006 29.630 0.00 0.00 35.88 2.57
2444 2465 2.418368 AATGATTTGCCGGCTCAGTA 57.582 45.000 29.70 11.90 0.00 2.74
2445 2466 2.645838 ATGATTTGCCGGCTCAGTAT 57.354 45.000 29.70 13.76 0.00 2.12
2462 2483 6.404623 GCTCAGTATCTCGAAGATGCTCATAT 60.405 42.308 10.77 0.00 42.80 1.78
2463 2484 7.459795 TCAGTATCTCGAAGATGCTCATATT 57.540 36.000 10.77 0.00 42.80 1.28
2466 2488 8.239998 CAGTATCTCGAAGATGCTCATATTGTA 58.760 37.037 10.77 0.00 42.80 2.41
2476 2498 1.867233 CTCATATTGTAGGGTGTGCGC 59.133 52.381 0.00 0.00 0.00 6.09
2481 2503 3.110178 GTAGGGTGTGCGCGTGTC 61.110 66.667 8.43 0.00 0.00 3.67
2486 2508 2.248431 GTGTGCGCGTGTCCTTTC 59.752 61.111 8.43 0.00 0.00 2.62
2488 2510 1.596752 TGTGCGCGTGTCCTTTCAT 60.597 52.632 8.43 0.00 0.00 2.57
2490 2512 0.370273 GTGCGCGTGTCCTTTCATAG 59.630 55.000 8.43 0.00 0.00 2.23
2494 2516 1.802880 CGCGTGTCCTTTCATAGAGGG 60.803 57.143 0.00 0.00 34.93 4.30
2517 2539 5.107104 GGTGAATGTATGCACGTATGTATGG 60.107 44.000 0.00 0.00 35.91 2.74
2521 2543 0.105964 ATGCACGTATGTATGGGCGT 59.894 50.000 0.00 0.00 44.44 5.68
2526 2548 0.042535 CGTATGTATGGGCGTTTGCG 60.043 55.000 0.00 0.00 44.10 4.85
2591 2613 2.333581 CTTTTCGGGCGCGGTTTT 59.666 55.556 23.74 0.00 0.00 2.43
2615 2637 1.581934 TTGAGCGAATATTCAGGGCG 58.418 50.000 15.57 2.90 0.00 6.13
2619 2641 1.300620 CGAATATTCAGGGCGCGGA 60.301 57.895 15.57 0.00 0.00 5.54
2626 2648 6.360370 AATATTCAGGGCGCGGATATATAT 57.640 37.500 8.83 3.00 0.00 0.86
2627 2649 7.476540 AATATTCAGGGCGCGGATATATATA 57.523 36.000 8.83 0.00 0.00 0.86
2629 2651 4.783764 TCAGGGCGCGGATATATATATG 57.216 45.455 8.83 0.00 0.00 1.78
2630 2652 4.149598 TCAGGGCGCGGATATATATATGT 58.850 43.478 8.83 0.00 0.00 2.29
2632 2654 3.190744 AGGGCGCGGATATATATATGTCG 59.809 47.826 8.83 13.35 0.00 4.35
2634 2656 4.543692 GGCGCGGATATATATATGTCGTT 58.456 43.478 8.83 0.00 0.00 3.85
2635 2657 5.335113 GGGCGCGGATATATATATGTCGTTA 60.335 44.000 8.83 0.00 0.00 3.18
2646 2687 1.705873 ATGTCGTTAGGCCCTCCTAG 58.294 55.000 0.00 0.00 45.21 3.02
2655 2696 3.554342 CCCTCCTAGCTGCCGCAT 61.554 66.667 2.05 0.00 39.10 4.73
2656 2697 2.507944 CCTCCTAGCTGCCGCATT 59.492 61.111 2.05 0.00 39.10 3.56
2657 2698 1.153086 CCTCCTAGCTGCCGCATTT 60.153 57.895 2.05 0.00 39.10 2.32
2658 2699 1.442526 CCTCCTAGCTGCCGCATTTG 61.443 60.000 2.05 0.00 39.10 2.32
2659 2700 2.056481 CTCCTAGCTGCCGCATTTGC 62.056 60.000 2.05 0.00 39.10 3.68
2671 2712 1.843992 GCATTTGCGGCAAATAGGAG 58.156 50.000 33.23 23.74 41.40 3.69
2672 2713 1.843992 CATTTGCGGCAAATAGGAGC 58.156 50.000 33.23 0.00 41.40 4.70
2673 2714 0.746659 ATTTGCGGCAAATAGGAGCC 59.253 50.000 32.97 0.00 41.50 4.70
2679 2878 1.153429 GCAAATAGGAGCCGGACGT 60.153 57.895 5.05 2.14 0.00 4.34
2683 2882 1.030457 AATAGGAGCCGGACGTACAG 58.970 55.000 5.05 0.00 0.00 2.74
2684 2883 0.182061 ATAGGAGCCGGACGTACAGA 59.818 55.000 5.05 0.00 0.00 3.41
2688 2887 0.456312 GAGCCGGACGTACAGACAAG 60.456 60.000 5.05 0.00 0.00 3.16
2720 2919 4.643387 GGCCCAACAGCAGACCGT 62.643 66.667 0.00 0.00 0.00 4.83
2721 2920 3.357079 GCCCAACAGCAGACCGTG 61.357 66.667 0.00 0.00 0.00 4.94
2722 2921 2.669569 CCCAACAGCAGACCGTGG 60.670 66.667 0.00 0.00 0.00 4.94
2723 2922 2.111043 CCAACAGCAGACCGTGGT 59.889 61.111 0.00 0.00 37.36 4.16
2726 2926 1.610624 CCAACAGCAGACCGTGGTATT 60.611 52.381 0.00 0.00 34.15 1.89
2738 2938 5.048294 AGACCGTGGTATTCAAAATTCCAAC 60.048 40.000 0.00 0.00 0.00 3.77
2739 2939 4.830600 ACCGTGGTATTCAAAATTCCAACT 59.169 37.500 0.31 0.00 0.00 3.16
2756 2956 4.225042 TCCAACTATTAGTGATGTGGCTGT 59.775 41.667 7.22 0.00 0.00 4.40
2760 2962 3.988976 ATTAGTGATGTGGCTGTGTCT 57.011 42.857 0.00 0.00 0.00 3.41
2763 2965 3.045601 AGTGATGTGGCTGTGTCTAAC 57.954 47.619 0.00 0.00 0.00 2.34
2786 2988 5.050490 CACAATACCTAATTCCCTCAGACG 58.950 45.833 0.00 0.00 0.00 4.18
2789 2991 1.906574 ACCTAATTCCCTCAGACGCAA 59.093 47.619 0.00 0.00 0.00 4.85
2801 3003 1.019278 AGACGCAACGGCATACCAAG 61.019 55.000 0.00 0.00 37.34 3.61
2819 3021 1.080569 GGCACCAACCAAGCATTCG 60.081 57.895 0.00 0.00 0.00 3.34
2821 3023 0.664166 GCACCAACCAAGCATTCGTG 60.664 55.000 0.00 0.00 0.00 4.35
2823 3025 1.336440 CACCAACCAAGCATTCGTGAA 59.664 47.619 0.00 0.00 0.00 3.18
2827 3029 4.082787 ACCAACCAAGCATTCGTGAATAAG 60.083 41.667 0.00 0.00 0.00 1.73
2830 3032 4.331968 ACCAAGCATTCGTGAATAAGGAA 58.668 39.130 0.00 0.00 37.10 3.36
2831 3033 4.764823 ACCAAGCATTCGTGAATAAGGAAA 59.235 37.500 0.00 0.00 36.33 3.13
2833 3035 5.801947 CCAAGCATTCGTGAATAAGGAAAAG 59.198 40.000 0.00 0.00 36.33 2.27
2834 3036 4.986622 AGCATTCGTGAATAAGGAAAAGC 58.013 39.130 0.00 0.00 36.33 3.51
2835 3037 4.702131 AGCATTCGTGAATAAGGAAAAGCT 59.298 37.500 0.00 0.00 40.37 3.74
2837 3039 5.391950 GCATTCGTGAATAAGGAAAAGCTCA 60.392 40.000 0.00 0.00 36.33 4.26
2849 3051 7.971183 AAGGAAAAGCTCAGTACTTTAAGAG 57.029 36.000 0.00 0.00 36.35 2.85
2928 3132 5.576447 AAACTGAACACTTTTTGGATCGT 57.424 34.783 0.00 0.00 0.00 3.73
2941 3145 7.710475 ACTTTTTGGATCGTGAACATTTTTCAT 59.290 29.630 0.00 0.00 0.00 2.57
2952 3156 6.421501 GTGAACATTTTTCATCATTGTGAGCA 59.578 34.615 0.00 0.00 0.00 4.26
2965 3169 6.717413 TCATTGTGAGCAAAATTTTGAAAGC 58.283 32.000 30.40 17.02 40.55 3.51
2999 3203 7.551035 TCCTGAAAAATTGGAACACATTTTG 57.449 32.000 0.00 0.00 39.29 2.44
3013 3217 7.226325 GGAACACATTTTGAAATCATGGACAAA 59.774 33.333 0.00 0.00 0.00 2.83
3050 3254 9.284594 CTGAACTTTCAAGAAAATACGAACAAA 57.715 29.630 0.00 0.00 36.64 2.83
3051 3255 9.796120 TGAACTTTCAAGAAAATACGAACAAAT 57.204 25.926 0.00 0.00 33.55 2.32
3077 3281 3.786657 AATTTGCGAACAATTTTCGGC 57.213 38.095 18.04 13.01 41.76 5.54
3086 3290 4.208047 CGAACAATTTTCGGCAAACATGAA 59.792 37.500 0.00 0.00 38.19 2.57
3089 3295 6.616774 ACAATTTTCGGCAAACATGAATTT 57.383 29.167 0.00 0.00 0.00 1.82
3159 3365 8.783833 TTTGAATTCTTTGGAAAATGTGAACA 57.216 26.923 7.05 0.00 34.90 3.18
3160 3366 8.783833 TTGAATTCTTTGGAAAATGTGAACAA 57.216 26.923 7.05 0.00 34.90 2.83
3162 3368 9.393512 TGAATTCTTTGGAAAATGTGAACAATT 57.606 25.926 7.05 0.00 34.90 2.32
3166 3372 9.837525 TTCTTTGGAAAATGTGAACAATTTTTG 57.162 25.926 0.00 0.00 29.87 2.44
3167 3373 8.457261 TCTTTGGAAAATGTGAACAATTTTTGG 58.543 29.630 0.00 0.00 29.87 3.28
3168 3374 7.928307 TTGGAAAATGTGAACAATTTTTGGA 57.072 28.000 0.00 0.00 29.87 3.53
3169 3375 7.928307 TGGAAAATGTGAACAATTTTTGGAA 57.072 28.000 0.00 0.00 29.87 3.53
3210 3416 6.202937 ACACGCGAACAATTTTTGAGAAATA 58.797 32.000 15.93 0.00 0.00 1.40
3216 3422 7.939386 GCGAACAATTTTTGAGAAATAAGAACG 59.061 33.333 0.00 0.00 0.00 3.95
3236 3442 9.849166 AAGAACGAAAAACTAAGAACATTTTGA 57.151 25.926 0.00 0.00 0.00 2.69
3237 3443 9.849166 AGAACGAAAAACTAAGAACATTTTGAA 57.151 25.926 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.379417 TCGTTTAAGGGAAGTTTGGGTAAAAA 59.621 34.615 0.00 0.00 0.00 1.94
21 22 5.890419 TCGTTTAAGGGAAGTTTGGGTAAAA 59.110 36.000 0.00 0.00 0.00 1.52
22 23 5.444176 TCGTTTAAGGGAAGTTTGGGTAAA 58.556 37.500 0.00 0.00 0.00 2.01
23 24 5.046288 TCGTTTAAGGGAAGTTTGGGTAA 57.954 39.130 0.00 0.00 0.00 2.85
24 25 4.703379 TCGTTTAAGGGAAGTTTGGGTA 57.297 40.909 0.00 0.00 0.00 3.69
25 26 3.581265 TCGTTTAAGGGAAGTTTGGGT 57.419 42.857 0.00 0.00 0.00 4.51
26 27 4.279922 ACAATCGTTTAAGGGAAGTTTGGG 59.720 41.667 0.00 0.00 0.00 4.12
27 28 5.009210 TCACAATCGTTTAAGGGAAGTTTGG 59.991 40.000 0.00 0.00 0.00 3.28
28 29 6.067263 TCACAATCGTTTAAGGGAAGTTTG 57.933 37.500 0.00 0.00 0.00 2.93
29 30 6.894339 ATCACAATCGTTTAAGGGAAGTTT 57.106 33.333 0.00 0.00 0.00 2.66
30 31 6.894339 AATCACAATCGTTTAAGGGAAGTT 57.106 33.333 0.00 0.00 0.00 2.66
31 32 6.894339 AAATCACAATCGTTTAAGGGAAGT 57.106 33.333 0.00 0.00 0.00 3.01
32 33 7.812648 TGTAAATCACAATCGTTTAAGGGAAG 58.187 34.615 0.00 0.00 32.95 3.46
33 34 7.747155 TGTAAATCACAATCGTTTAAGGGAA 57.253 32.000 0.00 0.00 32.95 3.97
34 35 7.931578 ATGTAAATCACAATCGTTTAAGGGA 57.068 32.000 0.00 0.00 41.55 4.20
41 42 9.787532 CCTCAATTTATGTAAATCACAATCGTT 57.212 29.630 0.00 0.00 41.55 3.85
42 43 8.405531 CCCTCAATTTATGTAAATCACAATCGT 58.594 33.333 0.00 0.00 41.55 3.73
43 44 8.620416 TCCCTCAATTTATGTAAATCACAATCG 58.380 33.333 0.00 0.00 41.55 3.34
44 45 9.956720 CTCCCTCAATTTATGTAAATCACAATC 57.043 33.333 0.00 0.00 41.55 2.67
45 46 8.917088 CCTCCCTCAATTTATGTAAATCACAAT 58.083 33.333 0.00 0.00 41.55 2.71
46 47 7.341769 CCCTCCCTCAATTTATGTAAATCACAA 59.658 37.037 0.00 0.00 41.55 3.33
47 48 6.833416 CCCTCCCTCAATTTATGTAAATCACA 59.167 38.462 0.00 0.00 42.69 3.58
48 49 6.265422 CCCCTCCCTCAATTTATGTAAATCAC 59.735 42.308 0.00 0.00 35.00 3.06
49 50 6.372931 CCCCTCCCTCAATTTATGTAAATCA 58.627 40.000 0.00 0.00 35.00 2.57
50 51 5.775195 CCCCCTCCCTCAATTTATGTAAATC 59.225 44.000 0.00 0.00 35.00 2.17
51 52 5.197806 ACCCCCTCCCTCAATTTATGTAAAT 59.802 40.000 0.00 0.00 37.49 1.40
52 53 4.546605 ACCCCCTCCCTCAATTTATGTAAA 59.453 41.667 0.00 0.00 0.00 2.01
53 54 4.079443 CACCCCCTCCCTCAATTTATGTAA 60.079 45.833 0.00 0.00 0.00 2.41
54 55 3.461831 CACCCCCTCCCTCAATTTATGTA 59.538 47.826 0.00 0.00 0.00 2.29
55 56 2.244769 CACCCCCTCCCTCAATTTATGT 59.755 50.000 0.00 0.00 0.00 2.29
56 57 2.424812 CCACCCCCTCCCTCAATTTATG 60.425 54.545 0.00 0.00 0.00 1.90
57 58 1.859574 CCACCCCCTCCCTCAATTTAT 59.140 52.381 0.00 0.00 0.00 1.40
58 59 1.304891 CCACCCCCTCCCTCAATTTA 58.695 55.000 0.00 0.00 0.00 1.40
59 60 1.518431 CCCACCCCCTCCCTCAATTT 61.518 60.000 0.00 0.00 0.00 1.82
60 61 1.935931 CCCACCCCCTCCCTCAATT 60.936 63.158 0.00 0.00 0.00 2.32
61 62 2.287194 CCCACCCCCTCCCTCAAT 60.287 66.667 0.00 0.00 0.00 2.57
62 63 4.693915 CCCCACCCCCTCCCTCAA 62.694 72.222 0.00 0.00 0.00 3.02
77 78 1.533033 CAAACTCAACCCCACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
78 79 0.397957 AACAAACTCAACCCCACCCC 60.398 55.000 0.00 0.00 0.00 4.95
79 80 2.235891 CTAACAAACTCAACCCCACCC 58.764 52.381 0.00 0.00 0.00 4.61
80 81 2.158579 TCCTAACAAACTCAACCCCACC 60.159 50.000 0.00 0.00 0.00 4.61
81 82 2.882761 GTCCTAACAAACTCAACCCCAC 59.117 50.000 0.00 0.00 0.00 4.61
82 83 2.510382 TGTCCTAACAAACTCAACCCCA 59.490 45.455 0.00 0.00 30.70 4.96
83 84 3.217681 TGTCCTAACAAACTCAACCCC 57.782 47.619 0.00 0.00 30.70 4.95
84 85 5.784578 AAATGTCCTAACAAACTCAACCC 57.215 39.130 0.00 0.00 39.30 4.11
85 86 6.017687 ACGTAAATGTCCTAACAAACTCAACC 60.018 38.462 0.00 0.00 39.30 3.77
86 87 6.951643 ACGTAAATGTCCTAACAAACTCAAC 58.048 36.000 0.00 0.00 39.30 3.18
87 88 8.659925 TTACGTAAATGTCCTAACAAACTCAA 57.340 30.769 5.31 0.00 39.30 3.02
88 89 8.659925 TTTACGTAAATGTCCTAACAAACTCA 57.340 30.769 16.59 0.00 39.30 3.41
90 91 9.887406 CATTTTACGTAAATGTCCTAACAAACT 57.113 29.630 20.72 0.00 45.25 2.66
103 104 9.693157 GTAATGCTACGAACATTTTACGTAAAT 57.307 29.630 20.72 6.59 40.88 1.40
104 105 8.706936 TGTAATGCTACGAACATTTTACGTAAA 58.293 29.630 16.59 16.59 40.88 2.01
105 106 8.161610 GTGTAATGCTACGAACATTTTACGTAA 58.838 33.333 3.29 3.29 40.88 3.18
106 107 7.461286 CGTGTAATGCTACGAACATTTTACGTA 60.461 37.037 18.20 0.00 42.54 3.57
107 108 6.527957 GTGTAATGCTACGAACATTTTACGT 58.472 36.000 0.00 0.00 38.62 3.57
108 109 5.665185 CGTGTAATGCTACGAACATTTTACG 59.335 40.000 15.65 15.65 42.54 3.18
109 110 5.955496 CCGTGTAATGCTACGAACATTTTAC 59.045 40.000 7.42 6.76 42.54 2.01
110 111 5.868258 TCCGTGTAATGCTACGAACATTTTA 59.132 36.000 7.42 0.00 42.54 1.52
111 112 4.691685 TCCGTGTAATGCTACGAACATTTT 59.308 37.500 7.42 0.00 42.54 1.82
112 113 4.092383 GTCCGTGTAATGCTACGAACATTT 59.908 41.667 7.42 0.00 42.54 2.32
113 114 3.615496 GTCCGTGTAATGCTACGAACATT 59.385 43.478 0.00 0.00 42.54 2.71
114 115 3.184541 GTCCGTGTAATGCTACGAACAT 58.815 45.455 0.00 0.00 42.54 2.71
115 116 2.598589 GTCCGTGTAATGCTACGAACA 58.401 47.619 0.00 0.00 42.54 3.18
116 117 1.580704 CGTCCGTGTAATGCTACGAAC 59.419 52.381 0.00 0.00 42.54 3.95
117 118 1.199789 ACGTCCGTGTAATGCTACGAA 59.800 47.619 0.00 0.00 42.54 3.85
118 119 0.804364 ACGTCCGTGTAATGCTACGA 59.196 50.000 0.00 0.00 42.54 3.43
119 120 2.369600 CTACGTCCGTGTAATGCTACG 58.630 52.381 1.98 0.00 39.83 3.51
120 121 2.355756 TCCTACGTCCGTGTAATGCTAC 59.644 50.000 1.98 0.00 0.00 3.58
121 122 2.642427 TCCTACGTCCGTGTAATGCTA 58.358 47.619 1.98 0.00 0.00 3.49
122 123 1.466856 TCCTACGTCCGTGTAATGCT 58.533 50.000 1.98 0.00 0.00 3.79
123 124 2.503920 ATCCTACGTCCGTGTAATGC 57.496 50.000 1.98 0.00 0.00 3.56
124 125 5.789710 AAAAATCCTACGTCCGTGTAATG 57.210 39.130 1.98 0.00 0.00 1.90
155 156 4.227197 TCATAGGCCTTTTGAACCCAAAA 58.773 39.130 12.58 0.00 46.55 2.44
156 157 3.850752 TCATAGGCCTTTTGAACCCAAA 58.149 40.909 12.58 0.00 40.24 3.28
157 158 3.534357 TCATAGGCCTTTTGAACCCAA 57.466 42.857 12.58 0.00 0.00 4.12
158 159 3.534357 TTCATAGGCCTTTTGAACCCA 57.466 42.857 20.98 5.41 0.00 4.51
159 160 3.366985 CGTTTCATAGGCCTTTTGAACCC 60.367 47.826 23.37 17.39 0.00 4.11
160 161 3.366985 CCGTTTCATAGGCCTTTTGAACC 60.367 47.826 23.37 18.03 0.00 3.62
161 162 3.254903 ACCGTTTCATAGGCCTTTTGAAC 59.745 43.478 23.37 16.74 0.00 3.18
162 163 3.492337 ACCGTTTCATAGGCCTTTTGAA 58.508 40.909 20.98 20.98 0.00 2.69
163 164 3.149005 ACCGTTTCATAGGCCTTTTGA 57.851 42.857 12.58 12.67 0.00 2.69
164 165 3.934457 AACCGTTTCATAGGCCTTTTG 57.066 42.857 12.58 10.12 0.00 2.44
165 166 4.698780 GTCTAACCGTTTCATAGGCCTTTT 59.301 41.667 12.58 0.00 0.00 2.27
166 167 4.259356 GTCTAACCGTTTCATAGGCCTTT 58.741 43.478 12.58 0.00 0.00 3.11
167 168 3.370209 GGTCTAACCGTTTCATAGGCCTT 60.370 47.826 12.58 0.00 38.20 4.35
168 169 2.169978 GGTCTAACCGTTTCATAGGCCT 59.830 50.000 11.78 11.78 38.20 5.19
169 170 2.558378 GGTCTAACCGTTTCATAGGCC 58.442 52.381 0.00 0.00 34.55 5.19
170 171 2.169978 AGGGTCTAACCGTTTCATAGGC 59.830 50.000 0.00 0.00 39.83 3.93
171 172 5.603170 TTAGGGTCTAACCGTTTCATAGG 57.397 43.478 0.00 0.00 39.83 2.57
172 173 9.257651 CTATTTTAGGGTCTAACCGTTTCATAG 57.742 37.037 0.00 0.00 39.83 2.23
173 174 8.206189 CCTATTTTAGGGTCTAACCGTTTCATA 58.794 37.037 0.00 0.00 42.42 2.15
174 175 7.052248 CCTATTTTAGGGTCTAACCGTTTCAT 58.948 38.462 0.00 0.00 42.42 2.57
175 176 6.408869 CCTATTTTAGGGTCTAACCGTTTCA 58.591 40.000 0.00 0.00 42.42 2.69
176 177 6.915544 CCTATTTTAGGGTCTAACCGTTTC 57.084 41.667 0.00 0.00 42.42 2.78
189 190 3.869065 TCAACAGCGACCCTATTTTAGG 58.131 45.455 0.00 0.00 45.81 2.69
190 191 7.576236 CATATTCAACAGCGACCCTATTTTAG 58.424 38.462 0.00 0.00 0.00 1.85
191 192 6.017440 GCATATTCAACAGCGACCCTATTTTA 60.017 38.462 0.00 0.00 0.00 1.52
192 193 5.221048 GCATATTCAACAGCGACCCTATTTT 60.221 40.000 0.00 0.00 0.00 1.82
193 194 4.275936 GCATATTCAACAGCGACCCTATTT 59.724 41.667 0.00 0.00 0.00 1.40
194 195 3.815401 GCATATTCAACAGCGACCCTATT 59.185 43.478 0.00 0.00 0.00 1.73
195 196 3.071602 AGCATATTCAACAGCGACCCTAT 59.928 43.478 0.00 0.00 0.00 2.57
196 197 2.434336 AGCATATTCAACAGCGACCCTA 59.566 45.455 0.00 0.00 0.00 3.53
197 198 1.210478 AGCATATTCAACAGCGACCCT 59.790 47.619 0.00 0.00 0.00 4.34
198 199 1.599542 GAGCATATTCAACAGCGACCC 59.400 52.381 0.00 0.00 0.00 4.46
199 200 1.599542 GGAGCATATTCAACAGCGACC 59.400 52.381 0.00 0.00 0.00 4.79
200 201 1.258982 CGGAGCATATTCAACAGCGAC 59.741 52.381 0.00 0.00 0.00 5.19
201 202 1.136110 TCGGAGCATATTCAACAGCGA 59.864 47.619 0.00 0.00 0.00 4.93
202 203 1.524355 CTCGGAGCATATTCAACAGCG 59.476 52.381 0.00 0.00 0.00 5.18
203 204 1.869767 CCTCGGAGCATATTCAACAGC 59.130 52.381 0.00 0.00 0.00 4.40
204 205 3.459232 TCCTCGGAGCATATTCAACAG 57.541 47.619 0.00 0.00 0.00 3.16
205 206 3.450817 TCTTCCTCGGAGCATATTCAACA 59.549 43.478 0.00 0.00 0.00 3.33
206 207 4.060038 TCTTCCTCGGAGCATATTCAAC 57.940 45.455 0.00 0.00 0.00 3.18
207 208 4.081142 TGTTCTTCCTCGGAGCATATTCAA 60.081 41.667 0.00 0.00 0.00 2.69
208 209 3.450817 TGTTCTTCCTCGGAGCATATTCA 59.549 43.478 0.00 0.00 0.00 2.57
209 210 4.060038 TGTTCTTCCTCGGAGCATATTC 57.940 45.455 0.00 0.00 0.00 1.75
210 211 4.384056 CATGTTCTTCCTCGGAGCATATT 58.616 43.478 0.00 0.00 33.95 1.28
211 212 3.805108 GCATGTTCTTCCTCGGAGCATAT 60.805 47.826 0.00 0.00 33.95 1.78
212 213 2.483714 GCATGTTCTTCCTCGGAGCATA 60.484 50.000 0.00 0.00 33.95 3.14
213 214 1.745141 GCATGTTCTTCCTCGGAGCAT 60.745 52.381 0.00 0.00 35.57 3.79
214 215 0.391661 GCATGTTCTTCCTCGGAGCA 60.392 55.000 0.00 0.00 0.00 4.26
215 216 1.424493 CGCATGTTCTTCCTCGGAGC 61.424 60.000 0.00 0.00 0.00 4.70
216 217 0.807667 CCGCATGTTCTTCCTCGGAG 60.808 60.000 0.00 0.00 39.23 4.63
217 218 1.218047 CCGCATGTTCTTCCTCGGA 59.782 57.895 0.00 0.00 39.23 4.55
218 219 1.815421 CCCGCATGTTCTTCCTCGG 60.815 63.158 0.00 0.00 36.90 4.63
219 220 0.807667 CTCCCGCATGTTCTTCCTCG 60.808 60.000 0.00 0.00 0.00 4.63
220 221 1.092345 GCTCCCGCATGTTCTTCCTC 61.092 60.000 0.00 0.00 35.78 3.71
221 222 1.078143 GCTCCCGCATGTTCTTCCT 60.078 57.895 0.00 0.00 35.78 3.36
222 223 2.115291 GGCTCCCGCATGTTCTTCC 61.115 63.158 0.00 0.00 38.10 3.46
223 224 0.749454 ATGGCTCCCGCATGTTCTTC 60.749 55.000 0.00 0.00 38.10 2.87
224 225 0.323725 AATGGCTCCCGCATGTTCTT 60.324 50.000 0.00 0.00 38.10 2.52
225 226 1.033746 CAATGGCTCCCGCATGTTCT 61.034 55.000 0.00 0.00 38.10 3.01
226 227 1.434696 CAATGGCTCCCGCATGTTC 59.565 57.895 0.00 0.00 38.10 3.18
227 228 2.053865 CCAATGGCTCCCGCATGTT 61.054 57.895 0.00 0.00 38.10 2.71
228 229 2.288642 ATCCAATGGCTCCCGCATGT 62.289 55.000 0.00 0.00 38.10 3.21
229 230 1.111116 AATCCAATGGCTCCCGCATG 61.111 55.000 0.00 0.00 38.10 4.06
230 231 0.397535 AAATCCAATGGCTCCCGCAT 60.398 50.000 0.00 0.00 38.10 4.73
231 232 0.257328 TAAATCCAATGGCTCCCGCA 59.743 50.000 0.00 0.00 38.10 5.69
232 233 1.398692 TTAAATCCAATGGCTCCCGC 58.601 50.000 0.00 0.00 0.00 6.13
233 234 3.891366 AGATTTAAATCCAATGGCTCCCG 59.109 43.478 21.86 0.00 36.04 5.14
234 235 4.895297 TCAGATTTAAATCCAATGGCTCCC 59.105 41.667 21.86 0.00 36.04 4.30
235 236 6.453092 CATCAGATTTAAATCCAATGGCTCC 58.547 40.000 21.86 0.00 36.04 4.70
236 237 5.924825 GCATCAGATTTAAATCCAATGGCTC 59.075 40.000 26.19 15.09 36.04 4.70
237 238 5.601313 AGCATCAGATTTAAATCCAATGGCT 59.399 36.000 26.19 22.54 36.04 4.75
238 239 5.850614 AGCATCAGATTTAAATCCAATGGC 58.149 37.500 26.19 21.33 36.04 4.40
239 240 7.046292 TGAGCATCAGATTTAAATCCAATGG 57.954 36.000 26.19 15.63 42.56 3.16
285 286 5.302360 ACTATAGGTGAGTTGCGTGAAAAA 58.698 37.500 4.43 0.00 0.00 1.94
286 287 4.890088 ACTATAGGTGAGTTGCGTGAAAA 58.110 39.130 4.43 0.00 0.00 2.29
287 288 4.491676 GACTATAGGTGAGTTGCGTGAAA 58.508 43.478 4.43 0.00 0.00 2.69
288 289 3.427098 CGACTATAGGTGAGTTGCGTGAA 60.427 47.826 4.43 0.00 0.00 3.18
289 290 2.096980 CGACTATAGGTGAGTTGCGTGA 59.903 50.000 4.43 0.00 0.00 4.35
290 291 2.451132 CGACTATAGGTGAGTTGCGTG 58.549 52.381 4.43 0.00 0.00 5.34
291 292 1.404391 CCGACTATAGGTGAGTTGCGT 59.596 52.381 4.43 0.00 0.00 5.24
292 293 1.404391 ACCGACTATAGGTGAGTTGCG 59.596 52.381 4.43 0.00 41.10 4.85
293 294 2.223758 GGACCGACTATAGGTGAGTTGC 60.224 54.545 4.43 0.00 43.01 4.17
294 295 3.021695 TGGACCGACTATAGGTGAGTTG 58.978 50.000 4.43 0.00 43.01 3.16
295 296 3.022406 GTGGACCGACTATAGGTGAGTT 58.978 50.000 4.43 0.00 43.01 3.01
296 297 2.025605 TGTGGACCGACTATAGGTGAGT 60.026 50.000 4.43 0.00 43.01 3.41
297 298 2.651455 TGTGGACCGACTATAGGTGAG 58.349 52.381 4.43 0.00 43.01 3.51
298 299 2.812836 TGTGGACCGACTATAGGTGA 57.187 50.000 4.43 0.00 43.01 4.02
299 300 5.287226 GTTAATGTGGACCGACTATAGGTG 58.713 45.833 4.43 0.00 43.01 4.00
300 301 4.343239 GGTTAATGTGGACCGACTATAGGT 59.657 45.833 4.43 0.00 46.16 3.08
301 302 4.342951 TGGTTAATGTGGACCGACTATAGG 59.657 45.833 4.43 0.00 38.81 2.57
302 303 5.163488 TGTGGTTAATGTGGACCGACTATAG 60.163 44.000 0.00 0.00 38.81 1.31
303 304 4.710865 TGTGGTTAATGTGGACCGACTATA 59.289 41.667 0.00 0.00 38.81 1.31
304 305 3.516300 TGTGGTTAATGTGGACCGACTAT 59.484 43.478 0.00 0.00 38.81 2.12
305 306 2.898612 TGTGGTTAATGTGGACCGACTA 59.101 45.455 0.00 0.00 38.81 2.59
306 307 1.695242 TGTGGTTAATGTGGACCGACT 59.305 47.619 0.00 0.00 38.81 4.18
307 308 2.073816 CTGTGGTTAATGTGGACCGAC 58.926 52.381 0.00 0.00 38.81 4.79
308 309 1.695242 ACTGTGGTTAATGTGGACCGA 59.305 47.619 0.00 0.00 38.81 4.69
309 310 1.804151 CACTGTGGTTAATGTGGACCG 59.196 52.381 0.00 0.00 38.81 4.79
314 315 1.069296 CACGCCACTGTGGTTAATGTG 60.069 52.381 26.48 20.89 40.46 3.21
315 316 1.234821 CACGCCACTGTGGTTAATGT 58.765 50.000 26.48 14.79 40.46 2.71
316 317 1.069296 CACACGCCACTGTGGTTAATG 60.069 52.381 26.48 20.09 44.21 1.90
317 318 1.202710 TCACACGCCACTGTGGTTAAT 60.203 47.619 26.48 9.04 44.21 1.40
318 319 0.178301 TCACACGCCACTGTGGTTAA 59.822 50.000 26.48 5.67 44.21 2.01
319 320 0.531090 GTCACACGCCACTGTGGTTA 60.531 55.000 26.48 4.99 44.21 2.85
320 321 1.817941 GTCACACGCCACTGTGGTT 60.818 57.895 26.48 12.44 44.21 3.67
321 322 2.203015 GTCACACGCCACTGTGGT 60.203 61.111 26.48 6.41 44.21 4.16
322 323 2.972505 GGTCACACGCCACTGTGG 60.973 66.667 22.46 22.46 44.21 4.17
323 324 1.165907 AATGGTCACACGCCACTGTG 61.166 55.000 0.00 0.00 45.41 3.66
324 325 1.148273 AATGGTCACACGCCACTGT 59.852 52.632 0.00 0.00 39.03 3.55
325 326 0.884259 TCAATGGTCACACGCCACTG 60.884 55.000 0.00 0.00 39.03 3.66
326 327 0.179032 TTCAATGGTCACACGCCACT 60.179 50.000 0.00 0.00 39.03 4.00
327 328 0.665835 TTTCAATGGTCACACGCCAC 59.334 50.000 0.00 0.00 39.03 5.01
328 329 1.614996 ATTTCAATGGTCACACGCCA 58.385 45.000 0.00 0.00 40.68 5.69
329 330 2.747446 AGTATTTCAATGGTCACACGCC 59.253 45.455 0.00 0.00 0.00 5.68
330 331 4.419522 AAGTATTTCAATGGTCACACGC 57.580 40.909 0.00 0.00 0.00 5.34
331 332 5.624900 CACAAAGTATTTCAATGGTCACACG 59.375 40.000 0.00 0.00 35.03 4.49
332 333 5.402270 GCACAAAGTATTTCAATGGTCACAC 59.598 40.000 0.00 0.00 35.03 3.82
333 334 5.527951 GCACAAAGTATTTCAATGGTCACA 58.472 37.500 0.00 0.00 35.03 3.58
334 335 4.616802 CGCACAAAGTATTTCAATGGTCAC 59.383 41.667 0.00 0.00 35.03 3.67
335 336 4.517075 TCGCACAAAGTATTTCAATGGTCA 59.483 37.500 0.00 0.00 35.03 4.02
336 337 5.041951 TCGCACAAAGTATTTCAATGGTC 57.958 39.130 0.00 0.00 35.03 4.02
337 338 5.446143 TTCGCACAAAGTATTTCAATGGT 57.554 34.783 0.00 0.00 35.03 3.55
338 339 6.761731 TTTTCGCACAAAGTATTTCAATGG 57.238 33.333 0.00 0.00 35.03 3.16
339 340 8.486383 TGAATTTTCGCACAAAGTATTTCAATG 58.514 29.630 0.00 0.00 35.03 2.82
340 341 8.586570 TGAATTTTCGCACAAAGTATTTCAAT 57.413 26.923 0.00 0.00 35.03 2.57
341 342 7.993821 TGAATTTTCGCACAAAGTATTTCAA 57.006 28.000 0.00 0.00 35.03 2.69
342 343 7.993821 TTGAATTTTCGCACAAAGTATTTCA 57.006 28.000 0.00 0.00 35.03 2.69
343 344 9.695884 TTTTTGAATTTTCGCACAAAGTATTTC 57.304 25.926 0.00 0.00 35.03 2.17
344 345 9.701355 CTTTTTGAATTTTCGCACAAAGTATTT 57.299 25.926 0.00 0.00 40.26 1.40
345 346 9.092876 TCTTTTTGAATTTTCGCACAAAGTATT 57.907 25.926 0.00 0.00 34.54 1.89
346 347 8.641499 TCTTTTTGAATTTTCGCACAAAGTAT 57.359 26.923 0.00 0.00 34.54 2.12
347 348 8.467402 TTCTTTTTGAATTTTCGCACAAAGTA 57.533 26.923 0.00 0.00 34.54 2.24
348 349 6.959671 TCTTTTTGAATTTTCGCACAAAGT 57.040 29.167 0.00 0.00 34.54 2.66
349 350 7.674564 TCTTCTTTTTGAATTTTCGCACAAAG 58.325 30.769 0.00 0.00 34.54 2.77
350 351 7.588143 TCTTCTTTTTGAATTTTCGCACAAA 57.412 28.000 0.00 0.00 33.71 2.83
351 352 7.588143 TTCTTCTTTTTGAATTTTCGCACAA 57.412 28.000 0.00 0.00 33.71 3.33
352 353 7.588143 TTTCTTCTTTTTGAATTTTCGCACA 57.412 28.000 0.00 0.00 33.71 4.57
353 354 7.954786 TGTTTTCTTCTTTTTGAATTTTCGCAC 59.045 29.630 0.00 0.00 33.71 5.34
354 355 7.954786 GTGTTTTCTTCTTTTTGAATTTTCGCA 59.045 29.630 0.00 0.00 33.71 5.10
355 356 7.425309 GGTGTTTTCTTCTTTTTGAATTTTCGC 59.575 33.333 0.00 0.00 33.71 4.70
356 357 8.655970 AGGTGTTTTCTTCTTTTTGAATTTTCG 58.344 29.630 0.00 0.00 33.71 3.46
359 360 9.283768 ACAAGGTGTTTTCTTCTTTTTGAATTT 57.716 25.926 0.00 0.00 33.71 1.82
360 361 8.720562 CACAAGGTGTTTTCTTCTTTTTGAATT 58.279 29.630 0.00 0.00 33.71 2.17
361 362 7.148423 GCACAAGGTGTTTTCTTCTTTTTGAAT 60.148 33.333 0.00 0.00 35.75 2.57
362 363 6.147000 GCACAAGGTGTTTTCTTCTTTTTGAA 59.853 34.615 0.00 0.00 35.75 2.69
363 364 5.637387 GCACAAGGTGTTTTCTTCTTTTTGA 59.363 36.000 0.00 0.00 35.75 2.69
364 365 5.407995 TGCACAAGGTGTTTTCTTCTTTTTG 59.592 36.000 0.00 0.00 35.75 2.44
365 366 5.546526 TGCACAAGGTGTTTTCTTCTTTTT 58.453 33.333 0.00 0.00 35.75 1.94
366 367 5.146010 TGCACAAGGTGTTTTCTTCTTTT 57.854 34.783 0.00 0.00 35.75 2.27
367 368 4.799564 TGCACAAGGTGTTTTCTTCTTT 57.200 36.364 0.00 0.00 35.75 2.52
368 369 4.799564 TTGCACAAGGTGTTTTCTTCTT 57.200 36.364 0.00 0.00 35.75 2.52
369 370 4.799564 TTTGCACAAGGTGTTTTCTTCT 57.200 36.364 0.00 0.00 35.75 2.85
370 371 6.533367 TGTAATTTGCACAAGGTGTTTTCTTC 59.467 34.615 0.00 0.00 35.75 2.87
371 372 6.402222 TGTAATTTGCACAAGGTGTTTTCTT 58.598 32.000 0.00 0.00 35.75 2.52
372 373 5.971763 TGTAATTTGCACAAGGTGTTTTCT 58.028 33.333 0.00 0.00 35.75 2.52
373 374 5.810074 ACTGTAATTTGCACAAGGTGTTTTC 59.190 36.000 0.00 0.00 35.75 2.29
374 375 5.729510 ACTGTAATTTGCACAAGGTGTTTT 58.270 33.333 0.00 0.00 35.75 2.43
375 376 5.337578 ACTGTAATTTGCACAAGGTGTTT 57.662 34.783 0.00 0.00 35.75 2.83
376 377 5.592688 ACTACTGTAATTTGCACAAGGTGTT 59.407 36.000 0.00 0.00 35.75 3.32
377 378 5.130350 ACTACTGTAATTTGCACAAGGTGT 58.870 37.500 0.00 0.00 35.75 4.16
378 379 5.334879 GGACTACTGTAATTTGCACAAGGTG 60.335 44.000 0.00 0.00 36.51 4.00
379 380 4.760204 GGACTACTGTAATTTGCACAAGGT 59.240 41.667 0.00 0.00 0.00 3.50
380 381 4.156008 GGGACTACTGTAATTTGCACAAGG 59.844 45.833 0.00 0.00 0.00 3.61
381 382 4.142902 CGGGACTACTGTAATTTGCACAAG 60.143 45.833 0.00 0.00 0.00 3.16
382 383 3.749088 CGGGACTACTGTAATTTGCACAA 59.251 43.478 0.00 0.00 0.00 3.33
383 384 3.244284 ACGGGACTACTGTAATTTGCACA 60.244 43.478 0.00 0.00 36.76 4.57
384 385 3.332034 ACGGGACTACTGTAATTTGCAC 58.668 45.455 0.00 0.00 36.76 4.57
385 386 3.688694 ACGGGACTACTGTAATTTGCA 57.311 42.857 0.00 0.00 36.76 4.08
391 392 2.091541 CGGGTTACGGGACTACTGTAA 58.908 52.381 0.00 0.00 46.11 2.41
392 393 1.750193 CGGGTTACGGGACTACTGTA 58.250 55.000 0.00 0.00 39.94 2.74
393 394 2.571548 CGGGTTACGGGACTACTGT 58.428 57.895 0.00 0.00 42.62 3.55
411 412 0.519961 ATTTGCTCGCCGTGGTAAAC 59.480 50.000 0.00 0.00 0.00 2.01
412 413 0.800012 GATTTGCTCGCCGTGGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
413 414 0.320858 TGATTTGCTCGCCGTGGTAA 60.321 50.000 0.00 0.00 0.00 2.85
414 415 1.017177 GTGATTTGCTCGCCGTGGTA 61.017 55.000 0.00 0.00 0.00 3.25
415 416 2.031919 TGATTTGCTCGCCGTGGT 59.968 55.556 0.00 0.00 0.00 4.16
416 417 1.970917 GAGTGATTTGCTCGCCGTGG 61.971 60.000 0.00 0.00 34.78 4.94
417 418 1.421485 GAGTGATTTGCTCGCCGTG 59.579 57.895 0.00 0.00 34.78 4.94
418 419 1.741770 GGAGTGATTTGCTCGCCGT 60.742 57.895 0.00 0.00 34.78 5.68
419 420 2.802667 CGGAGTGATTTGCTCGCCG 61.803 63.158 0.00 0.00 44.51 6.46
420 421 1.741770 ACGGAGTGATTTGCTCGCC 60.742 57.895 0.00 0.00 42.51 5.54
421 422 3.876300 ACGGAGTGATTTGCTCGC 58.124 55.556 0.00 0.00 42.51 5.03
433 434 0.965866 TGGCTGGTCAGTAGACGGAG 60.966 60.000 0.00 0.00 45.92 4.63
434 435 0.541063 TTGGCTGGTCAGTAGACGGA 60.541 55.000 0.00 0.00 45.92 4.69
435 436 0.389948 GTTGGCTGGTCAGTAGACGG 60.390 60.000 0.00 0.00 45.92 4.79
436 437 0.317160 TGTTGGCTGGTCAGTAGACG 59.683 55.000 0.00 0.00 45.92 4.18
437 438 1.070134 TGTGTTGGCTGGTCAGTAGAC 59.930 52.381 0.00 0.00 44.21 2.59
438 439 1.419381 TGTGTTGGCTGGTCAGTAGA 58.581 50.000 0.00 0.00 0.00 2.59
439 440 1.873591 GTTGTGTTGGCTGGTCAGTAG 59.126 52.381 0.00 0.00 0.00 2.57
440 441 1.808512 CGTTGTGTTGGCTGGTCAGTA 60.809 52.381 0.00 0.00 0.00 2.74
441 442 1.095228 CGTTGTGTTGGCTGGTCAGT 61.095 55.000 0.00 0.00 0.00 3.41
442 443 1.648720 CGTTGTGTTGGCTGGTCAG 59.351 57.895 0.00 0.00 0.00 3.51
443 444 1.821759 CCGTTGTGTTGGCTGGTCA 60.822 57.895 0.00 0.00 0.00 4.02
444 445 0.889186 ATCCGTTGTGTTGGCTGGTC 60.889 55.000 0.00 0.00 0.00 4.02
445 446 0.398696 TATCCGTTGTGTTGGCTGGT 59.601 50.000 0.00 0.00 0.00 4.00
446 447 0.802494 GTATCCGTTGTGTTGGCTGG 59.198 55.000 0.00 0.00 0.00 4.85
447 448 1.196808 GTGTATCCGTTGTGTTGGCTG 59.803 52.381 0.00 0.00 0.00 4.85
448 449 1.071699 AGTGTATCCGTTGTGTTGGCT 59.928 47.619 0.00 0.00 0.00 4.75
449 450 1.519408 AGTGTATCCGTTGTGTTGGC 58.481 50.000 0.00 0.00 0.00 4.52
450 451 3.921677 ACTAGTGTATCCGTTGTGTTGG 58.078 45.455 0.00 0.00 0.00 3.77
451 452 5.921976 TGTAACTAGTGTATCCGTTGTGTTG 59.078 40.000 0.00 0.00 0.00 3.33
452 453 6.088016 TGTAACTAGTGTATCCGTTGTGTT 57.912 37.500 0.00 0.00 0.00 3.32
453 454 5.710513 TGTAACTAGTGTATCCGTTGTGT 57.289 39.130 0.00 0.00 0.00 3.72
454 455 7.033791 AGAATGTAACTAGTGTATCCGTTGTG 58.966 38.462 0.00 0.00 0.00 3.33
455 456 7.166691 AGAATGTAACTAGTGTATCCGTTGT 57.833 36.000 0.00 0.00 0.00 3.32
456 457 6.696148 GGAGAATGTAACTAGTGTATCCGTTG 59.304 42.308 0.00 0.00 0.00 4.10
457 458 6.183360 GGGAGAATGTAACTAGTGTATCCGTT 60.183 42.308 0.00 0.00 0.00 4.44
458 459 5.301298 GGGAGAATGTAACTAGTGTATCCGT 59.699 44.000 0.00 0.00 0.00 4.69
459 460 5.278858 GGGGAGAATGTAACTAGTGTATCCG 60.279 48.000 0.00 0.00 0.00 4.18
460 461 5.278858 CGGGGAGAATGTAACTAGTGTATCC 60.279 48.000 0.00 0.00 0.00 2.59
461 462 5.770417 CGGGGAGAATGTAACTAGTGTATC 58.230 45.833 0.00 0.00 0.00 2.24
462 463 4.038883 GCGGGGAGAATGTAACTAGTGTAT 59.961 45.833 0.00 0.00 0.00 2.29
463 464 3.382546 GCGGGGAGAATGTAACTAGTGTA 59.617 47.826 0.00 0.00 0.00 2.90
464 465 2.167900 GCGGGGAGAATGTAACTAGTGT 59.832 50.000 0.00 0.00 0.00 3.55
465 466 2.483188 GGCGGGGAGAATGTAACTAGTG 60.483 54.545 0.00 0.00 0.00 2.74
466 467 1.761198 GGCGGGGAGAATGTAACTAGT 59.239 52.381 0.00 0.00 0.00 2.57
467 468 1.269621 CGGCGGGGAGAATGTAACTAG 60.270 57.143 0.00 0.00 0.00 2.57
468 469 0.748450 CGGCGGGGAGAATGTAACTA 59.252 55.000 0.00 0.00 0.00 2.24
469 470 1.520666 CGGCGGGGAGAATGTAACT 59.479 57.895 0.00 0.00 0.00 2.24
470 471 1.523032 CCGGCGGGGAGAATGTAAC 60.523 63.158 20.56 0.00 38.47 2.50
471 472 2.904905 CCGGCGGGGAGAATGTAA 59.095 61.111 20.56 0.00 38.47 2.41
472 473 3.857038 GCCGGCGGGGAGAATGTA 61.857 66.667 29.48 0.00 38.47 2.29
560 561 3.982475 TCGATGAGCTTCCATGTATGAC 58.018 45.455 0.00 0.00 0.00 3.06
631 636 2.746277 CGCGGAAGGTTCCCAAGG 60.746 66.667 0.00 0.00 44.67 3.61
679 684 1.136147 GCTTGGCTGTGCAGATTCG 59.864 57.895 3.02 0.00 0.00 3.34
897 903 0.752658 CATGTAGTCTGATCCGGGCA 59.247 55.000 0.00 0.00 0.00 5.36
898 904 0.601311 GCATGTAGTCTGATCCGGGC 60.601 60.000 0.00 0.00 0.00 6.13
924 940 1.660560 CGTACACCCCTACCGTCCTG 61.661 65.000 0.00 0.00 0.00 3.86
939 955 2.075338 CCTATCCTACTCCGCTCGTAC 58.925 57.143 0.00 0.00 0.00 3.67
940 956 1.973515 TCCTATCCTACTCCGCTCGTA 59.026 52.381 0.00 0.00 0.00 3.43
946 962 2.488545 CGATGGTTCCTATCCTACTCCG 59.511 54.545 0.00 0.00 0.00 4.63
1029 1045 0.911769 TGGTGATGGGATGAGTGGAC 59.088 55.000 0.00 0.00 0.00 4.02
1050 1066 0.317269 CTTGCTTGTGACTTGGTGCG 60.317 55.000 0.00 0.00 0.00 5.34
1069 1085 0.589223 CGGTGATCGAGCTCCTACTC 59.411 60.000 18.58 0.44 42.43 2.59
1102 1118 4.383679 GAAACGAAACACTTGCGATCTAC 58.616 43.478 0.00 0.00 0.00 2.59
1103 1119 3.430895 GGAAACGAAACACTTGCGATCTA 59.569 43.478 0.00 0.00 0.00 1.98
1106 1122 1.944024 TGGAAACGAAACACTTGCGAT 59.056 42.857 0.00 0.00 0.00 4.58
1120 1136 0.736053 TGAAACTGCACCGTGGAAAC 59.264 50.000 0.00 0.00 0.00 2.78
1127 1143 0.040958 GACTTGCTGAAACTGCACCG 60.041 55.000 0.00 0.00 37.99 4.94
1169 1186 0.541863 AGCACCATGGCCACTACTAC 59.458 55.000 8.16 0.00 0.00 2.73
1170 1187 0.830648 GAGCACCATGGCCACTACTA 59.169 55.000 8.16 0.00 0.00 1.82
1171 1188 1.200760 TGAGCACCATGGCCACTACT 61.201 55.000 8.16 0.42 0.00 2.57
1172 1189 0.745845 CTGAGCACCATGGCCACTAC 60.746 60.000 8.16 0.00 0.00 2.73
1360 1377 0.167470 CGGAGTTTAGCGAGACGACA 59.833 55.000 0.00 0.00 0.00 4.35
1680 1700 1.080501 CAGATGTGCGTGGAGTCGT 60.081 57.895 0.00 0.00 0.00 4.34
2044 2064 2.266689 GTGGCGGGGTCGTACAAT 59.733 61.111 0.00 0.00 38.89 2.71
2113 2133 1.001633 TCAAGCGTACAGGGAAAGTCC 59.998 52.381 0.00 0.00 35.23 3.85
2169 2189 7.201401 GCCAATATAAACGAACGAAGCAATTTT 60.201 33.333 0.14 0.00 0.00 1.82
2198 2218 1.633945 AGTTCTTATGGGCCGGAACTT 59.366 47.619 20.35 0.00 43.65 2.66
2199 2219 1.286248 AGTTCTTATGGGCCGGAACT 58.714 50.000 20.35 20.35 42.07 3.01
2240 2261 3.906998 CCACACATTGGTTCGCATTTTA 58.093 40.909 0.00 0.00 41.10 1.52
2255 2276 1.478471 CCCTGACCATCAAACCACACA 60.478 52.381 0.00 0.00 0.00 3.72
2256 2277 1.247567 CCCTGACCATCAAACCACAC 58.752 55.000 0.00 0.00 0.00 3.82
2265 2286 0.625849 ACAATGTCCCCCTGACCATC 59.374 55.000 0.00 0.00 43.78 3.51
2266 2287 1.084018 AACAATGTCCCCCTGACCAT 58.916 50.000 0.00 0.00 43.78 3.55
2267 2288 1.748732 TAACAATGTCCCCCTGACCA 58.251 50.000 0.00 0.00 43.78 4.02
2268 2289 2.422945 GGATAACAATGTCCCCCTGACC 60.423 54.545 0.00 0.00 43.78 4.02
2269 2290 2.509964 AGGATAACAATGTCCCCCTGAC 59.490 50.000 0.00 0.00 44.72 3.51
2270 2291 2.858644 AGGATAACAATGTCCCCCTGA 58.141 47.619 0.00 0.00 37.55 3.86
2271 2292 3.669939 AAGGATAACAATGTCCCCCTG 57.330 47.619 2.11 0.00 37.55 4.45
2274 2295 3.487372 GGCTAAGGATAACAATGTCCCC 58.513 50.000 0.00 0.00 37.55 4.81
2281 2302 4.601406 AATGGTGGGCTAAGGATAACAA 57.399 40.909 0.00 0.00 0.00 2.83
2284 2305 8.507761 ACTTAAATAATGGTGGGCTAAGGATAA 58.492 33.333 0.00 0.00 0.00 1.75
2288 2309 6.126409 TGACTTAAATAATGGTGGGCTAAGG 58.874 40.000 0.00 0.00 0.00 2.69
2290 2311 6.549364 CCATGACTTAAATAATGGTGGGCTAA 59.451 38.462 0.00 0.00 35.78 3.09
2301 2322 4.257731 TGCGAGCACCATGACTTAAATAA 58.742 39.130 0.00 0.00 0.00 1.40
2303 2324 2.710377 TGCGAGCACCATGACTTAAAT 58.290 42.857 0.00 0.00 0.00 1.40
2306 2327 2.401583 AATGCGAGCACCATGACTTA 57.598 45.000 0.00 0.00 0.00 2.24
2312 2333 4.717233 TCAAAAATAATGCGAGCACCAT 57.283 36.364 0.00 0.00 0.00 3.55
2315 2336 9.971744 AAATAAATTCAAAAATAATGCGAGCAC 57.028 25.926 0.00 0.00 0.00 4.40
2330 2351 8.244802 TCGCCGAAAATCCTAAAATAAATTCAA 58.755 29.630 0.00 0.00 0.00 2.69
2333 2354 7.169140 GCATCGCCGAAAATCCTAAAATAAATT 59.831 33.333 0.00 0.00 0.00 1.82
2342 2363 1.134521 AGTGCATCGCCGAAAATCCTA 60.135 47.619 0.00 0.00 0.00 2.94
2344 2365 0.451783 AAGTGCATCGCCGAAAATCC 59.548 50.000 0.00 0.00 0.00 3.01
2350 2371 3.874873 CTGAAAGTGCATCGCCGA 58.125 55.556 0.00 0.00 0.00 5.54
2361 2382 3.262915 AGAACATCTCCTCCCACTGAAAG 59.737 47.826 0.00 0.00 42.29 2.62
2378 2399 1.668919 GCCTCGTCATCGACAAGAACA 60.669 52.381 0.00 0.00 41.35 3.18
2379 2400 0.992802 GCCTCGTCATCGACAAGAAC 59.007 55.000 0.00 0.00 41.35 3.01
2380 2401 0.456142 CGCCTCGTCATCGACAAGAA 60.456 55.000 0.00 0.00 41.35 2.52
2382 2403 2.508891 GCGCCTCGTCATCGACAAG 61.509 63.158 0.00 0.00 41.35 3.16
2385 2406 2.831366 TAGGCGCCTCGTCATCGAC 61.831 63.158 36.73 0.00 41.35 4.20
2386 2407 2.515290 TAGGCGCCTCGTCATCGA 60.515 61.111 36.73 10.36 44.12 3.59
2387 2408 2.353607 GTAGGCGCCTCGTCATCG 60.354 66.667 36.73 0.00 32.13 3.84
2388 2409 2.131294 ATCGTAGGCGCCTCGTCATC 62.131 60.000 36.73 15.88 38.14 2.92
2389 2410 2.194212 ATCGTAGGCGCCTCGTCAT 61.194 57.895 36.73 21.46 38.14 3.06
2390 2411 2.827190 ATCGTAGGCGCCTCGTCA 60.827 61.111 36.73 20.23 38.14 4.35
2391 2412 2.353607 CATCGTAGGCGCCTCGTC 60.354 66.667 36.73 22.80 38.14 4.20
2413 2434 5.229887 CCGGCAAATCATTTTGAGATTTACG 59.770 40.000 13.29 13.29 44.11 3.18
2414 2435 5.005682 GCCGGCAAATCATTTTGAGATTTAC 59.994 40.000 24.80 0.00 44.11 2.01
2425 2446 2.418368 TACTGAGCCGGCAAATCATT 57.582 45.000 31.54 19.57 0.00 2.57
2431 2452 1.035385 TCGAGATACTGAGCCGGCAA 61.035 55.000 31.54 16.00 0.00 4.52
2432 2453 1.035385 TTCGAGATACTGAGCCGGCA 61.035 55.000 31.54 7.75 0.00 5.69
2444 2465 6.350864 CCCTACAATATGAGCATCTTCGAGAT 60.351 42.308 0.00 0.00 34.74 2.75
2445 2466 5.047731 CCCTACAATATGAGCATCTTCGAGA 60.048 44.000 0.00 0.00 34.92 4.04
2462 2483 2.663520 CACGCGCACACCCTACAA 60.664 61.111 5.73 0.00 0.00 2.41
2463 2484 3.851845 GACACGCGCACACCCTACA 62.852 63.158 5.73 0.00 0.00 2.74
2476 2498 2.496070 TCACCCTCTATGAAAGGACACG 59.504 50.000 0.00 0.00 35.83 4.49
2481 2503 5.471456 GCATACATTCACCCTCTATGAAAGG 59.529 44.000 0.00 0.00 39.43 3.11
2483 2505 5.822519 GTGCATACATTCACCCTCTATGAAA 59.177 40.000 0.00 0.00 39.43 2.69
2486 2508 3.742882 CGTGCATACATTCACCCTCTATG 59.257 47.826 0.00 0.00 0.00 2.23
2488 2510 2.764010 ACGTGCATACATTCACCCTCTA 59.236 45.455 0.00 0.00 0.00 2.43
2490 2512 2.024176 ACGTGCATACATTCACCCTC 57.976 50.000 0.00 0.00 0.00 4.30
2494 2516 5.107104 CCCATACATACGTGCATACATTCAC 60.107 44.000 0.00 0.00 0.00 3.18
2517 2539 1.219522 ACAGTACAGACGCAAACGCC 61.220 55.000 0.00 0.00 45.53 5.68
2521 2543 5.798015 TTTTAACACAGTACAGACGCAAA 57.202 34.783 0.00 0.00 0.00 3.68
2602 2624 2.380084 TATCCGCGCCCTGAATATTC 57.620 50.000 8.60 8.60 0.00 1.75
2612 2634 4.156664 ACGACATATATATATCCGCGCC 57.843 45.455 17.41 0.00 0.00 6.53
2615 2637 6.091437 GGCCTAACGACATATATATATCCGC 58.909 44.000 17.41 5.48 0.00 5.54
2619 2641 7.536625 AGGAGGGCCTAACGACATATATATAT 58.463 38.462 5.73 0.00 44.74 0.86
2626 2648 2.872732 CTAGGAGGGCCTAACGACATA 58.127 52.381 5.73 0.00 45.93 2.29
2627 2649 1.705873 CTAGGAGGGCCTAACGACAT 58.294 55.000 5.73 0.00 45.93 3.06
2629 2651 0.756070 AGCTAGGAGGGCCTAACGAC 60.756 60.000 5.73 0.00 45.93 4.34
2630 2652 0.755698 CAGCTAGGAGGGCCTAACGA 60.756 60.000 5.73 0.00 45.93 3.85
2632 2654 1.448069 GCAGCTAGGAGGGCCTAAC 59.552 63.158 5.73 2.01 45.93 2.34
2634 2656 2.122813 GGCAGCTAGGAGGGCCTA 60.123 66.667 5.73 0.00 44.74 3.93
2654 2695 0.746659 GGCTCCTATTTGCCGCAAAT 59.253 50.000 29.16 29.16 44.74 2.32
2655 2696 2.188912 GGCTCCTATTTGCCGCAAA 58.811 52.632 20.38 20.38 39.71 3.68
2656 2697 3.918544 GGCTCCTATTTGCCGCAA 58.081 55.556 0.38 0.38 39.71 4.85
2660 2701 1.887707 CGTCCGGCTCCTATTTGCC 60.888 63.158 0.00 0.00 45.25 4.52
2661 2702 0.103572 TACGTCCGGCTCCTATTTGC 59.896 55.000 0.00 0.00 0.00 3.68
2663 2704 1.407979 CTGTACGTCCGGCTCCTATTT 59.592 52.381 0.00 0.00 0.00 1.40
2666 2707 0.745845 GTCTGTACGTCCGGCTCCTA 60.746 60.000 0.00 0.00 0.00 2.94
2668 2709 1.870055 TTGTCTGTACGTCCGGCTCC 61.870 60.000 0.00 0.00 0.00 4.70
2669 2710 0.456312 CTTGTCTGTACGTCCGGCTC 60.456 60.000 0.00 0.00 0.00 4.70
2671 2712 1.007336 CACTTGTCTGTACGTCCGGC 61.007 60.000 0.00 0.00 0.00 6.13
2672 2713 0.388134 CCACTTGTCTGTACGTCCGG 60.388 60.000 0.00 0.00 0.00 5.14
2673 2714 1.007336 GCCACTTGTCTGTACGTCCG 61.007 60.000 0.00 0.00 0.00 4.79
2674 2715 0.669625 GGCCACTTGTCTGTACGTCC 60.670 60.000 0.00 0.00 0.00 4.79
2675 2716 0.032952 TGGCCACTTGTCTGTACGTC 59.967 55.000 0.00 0.00 0.00 4.34
2679 2878 1.271325 CCATGTGGCCACTTGTCTGTA 60.271 52.381 36.25 18.45 35.46 2.74
2683 2882 3.685435 CCCATGTGGCCACTTGTC 58.315 61.111 36.25 15.77 35.46 3.18
2703 2902 4.643387 ACGGTCTGCTGTTGGGCC 62.643 66.667 0.00 0.00 0.00 5.80
2716 2915 4.830600 AGTTGGAATTTTGAATACCACGGT 59.169 37.500 0.00 0.00 0.00 4.83
2717 2916 5.385509 AGTTGGAATTTTGAATACCACGG 57.614 39.130 0.00 0.00 0.00 4.94
2726 2926 8.739039 CCACATCACTAATAGTTGGAATTTTGA 58.261 33.333 3.38 0.00 0.00 2.69
2738 2938 5.016051 AGACACAGCCACATCACTAATAG 57.984 43.478 0.00 0.00 0.00 1.73
2739 2939 6.071051 TGTTAGACACAGCCACATCACTAATA 60.071 38.462 0.00 0.00 0.00 0.98
2756 2956 7.181305 TGAGGGAATTAGGTATTGTGTTAGACA 59.819 37.037 0.00 0.00 0.00 3.41
2760 2962 7.562135 GTCTGAGGGAATTAGGTATTGTGTTA 58.438 38.462 0.00 0.00 0.00 2.41
2763 2965 5.050490 CGTCTGAGGGAATTAGGTATTGTG 58.950 45.833 0.00 0.00 0.00 3.33
2786 2988 2.339556 TGCCTTGGTATGCCGTTGC 61.340 57.895 0.00 0.00 37.67 4.17
2789 2991 2.045340 GGTGCCTTGGTATGCCGT 60.045 61.111 0.00 0.00 37.67 5.68
2801 3003 1.080569 CGAATGCTTGGTTGGTGCC 60.081 57.895 0.00 0.00 0.00 5.01
2819 3021 7.674471 AAGTACTGAGCTTTTCCTTATTCAC 57.326 36.000 0.00 0.00 0.00 3.18
2823 3025 9.660180 CTCTTAAAGTACTGAGCTTTTCCTTAT 57.340 33.333 0.00 0.00 37.37 1.73
2827 3029 6.171932 GCTCTTAAAGTACTGAGCTTTTCC 57.828 41.667 20.22 0.00 45.78 3.13
2905 3109 5.804979 CACGATCCAAAAAGTGTTCAGTTTT 59.195 36.000 11.18 11.18 0.00 2.43
2909 3113 4.811555 TCACGATCCAAAAAGTGTTCAG 57.188 40.909 0.00 0.00 36.16 3.02
2910 3114 4.396478 TGTTCACGATCCAAAAAGTGTTCA 59.604 37.500 0.00 0.00 36.16 3.18
2911 3115 4.915704 TGTTCACGATCCAAAAAGTGTTC 58.084 39.130 0.00 0.00 36.16 3.18
2912 3116 4.974368 TGTTCACGATCCAAAAAGTGTT 57.026 36.364 0.00 0.00 36.16 3.32
2914 3118 6.826893 AAAATGTTCACGATCCAAAAAGTG 57.173 33.333 0.00 0.00 36.06 3.16
2915 3119 7.038659 TGAAAAATGTTCACGATCCAAAAAGT 58.961 30.769 0.00 0.00 0.00 2.66
2916 3120 7.462109 TGAAAAATGTTCACGATCCAAAAAG 57.538 32.000 0.00 0.00 0.00 2.27
2917 3121 7.708322 TGATGAAAAATGTTCACGATCCAAAAA 59.292 29.630 0.00 0.00 0.00 1.94
2918 3122 7.205992 TGATGAAAAATGTTCACGATCCAAAA 58.794 30.769 0.00 0.00 0.00 2.44
2919 3123 6.743110 TGATGAAAAATGTTCACGATCCAAA 58.257 32.000 0.00 0.00 0.00 3.28
2920 3124 6.324561 TGATGAAAAATGTTCACGATCCAA 57.675 33.333 0.00 0.00 0.00 3.53
2921 3125 5.956068 TGATGAAAAATGTTCACGATCCA 57.044 34.783 0.00 0.00 0.00 3.41
2922 3126 6.808212 ACAATGATGAAAAATGTTCACGATCC 59.192 34.615 0.00 0.00 0.00 3.36
2923 3127 7.538334 TCACAATGATGAAAAATGTTCACGATC 59.462 33.333 0.00 0.00 0.00 3.69
2928 3132 6.514063 TGCTCACAATGATGAAAAATGTTCA 58.486 32.000 0.00 0.00 0.00 3.18
2941 3145 6.315642 TGCTTTCAAAATTTTGCTCACAATGA 59.684 30.769 23.36 2.95 38.05 2.57
2952 3156 8.905850 AGGATTGTTTCATGCTTTCAAAATTTT 58.094 25.926 0.00 0.00 0.00 1.82
2965 3169 7.966246 TCCAATTTTTCAGGATTGTTTCATG 57.034 32.000 0.00 0.00 37.48 3.07
2999 3203 9.264719 AGAGTTTCAAAATTTGTCCATGATTTC 57.735 29.630 5.56 0.00 0.00 2.17
3050 3254 9.965748 CCGAAAATTGTTCGCAAATTTTATAAT 57.034 25.926 3.34 0.00 39.50 1.28
3051 3255 7.952637 GCCGAAAATTGTTCGCAAATTTTATAA 59.047 29.630 3.34 0.00 39.50 0.98
3135 3341 8.783833 TTGTTCACATTTTCCAAAGAATTCAA 57.216 26.923 8.44 0.00 0.00 2.69
3145 3351 7.928307 TTCCAAAAATTGTTCACATTTTCCA 57.072 28.000 1.37 0.00 31.45 3.53
3153 3359 7.227992 TGTTCGAATTCCAAAAATTGTTCAC 57.772 32.000 0.00 0.00 0.00 3.18
3155 3361 9.715123 AAAATGTTCGAATTCCAAAAATTGTTC 57.285 25.926 0.00 0.00 0.00 3.18
3210 3416 9.849166 TCAAAATGTTCTTAGTTTTTCGTTCTT 57.151 25.926 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.