Multiple sequence alignment - TraesCS6D01G296100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G296100 chr6D 100.000 3172 0 0 1 3172 407472044 407468873 0.000000e+00 5858.0
1 TraesCS6D01G296100 chr6D 78.501 507 96 11 1503 2007 407523216 407523711 1.420000e-83 320.0
2 TraesCS6D01G296100 chr6B 90.994 2143 95 46 458 2547 611462084 611459987 0.000000e+00 2798.0
3 TraesCS6D01G296100 chr6B 90.335 269 13 6 135 397 611462361 611462100 1.090000e-89 340.0
4 TraesCS6D01G296100 chr6B 90.058 171 15 2 2803 2973 611459864 611459696 1.480000e-53 220.0
5 TraesCS6D01G296100 chr6B 90.909 55 5 0 2601 2655 611459973 611459919 1.220000e-09 75.0
6 TraesCS6D01G296100 chr6A 89.825 2054 106 40 139 2171 553005248 553003277 0.000000e+00 2540.0
7 TraesCS6D01G296100 chr6A 84.906 371 27 20 2203 2559 553003147 553002792 6.510000e-92 348.0
8 TraesCS6D01G296100 chr6A 78.107 507 98 8 1503 2007 553055344 553055839 3.070000e-80 309.0
9 TraesCS6D01G296100 chr6A 100.000 37 0 0 2170 2206 553003195 553003159 5.680000e-08 69.4
10 TraesCS6D01G296100 chr7B 79.400 500 87 12 1515 2009 95045945 95045457 3.920000e-89 339.0
11 TraesCS6D01G296100 chr7B 78.600 500 91 12 1515 2009 94810448 94809960 1.840000e-82 316.0
12 TraesCS6D01G296100 chr7B 94.872 195 7 3 2981 3172 412314947 412315141 5.140000e-78 302.0
13 TraesCS6D01G296100 chr7A 79.084 502 87 14 1503 1998 132619506 132619995 2.360000e-86 329.0
14 TraesCS6D01G296100 chr7A 90.909 110 8 2 2874 2982 429740872 429740764 2.550000e-31 147.0
15 TraesCS6D01G296100 chr7D 78.835 515 87 18 1503 2009 133827706 133828206 8.480000e-86 327.0
16 TraesCS6D01G296100 chr7D 95.385 195 6 3 2981 3172 231557720 231557526 1.110000e-79 307.0
17 TraesCS6D01G296100 chr7D 91.892 111 6 3 2874 2982 382122500 382122391 5.480000e-33 152.0
18 TraesCS6D01G296100 chr5B 96.410 195 4 3 2981 3172 413611387 413611581 5.110000e-83 318.0
19 TraesCS6D01G296100 chr5B 95.897 195 5 3 2981 3172 429040582 429040776 2.380000e-81 313.0
20 TraesCS6D01G296100 chr5A 95.897 195 5 3 2981 3172 482025437 482025243 2.380000e-81 313.0
21 TraesCS6D01G296100 chr5A 93.204 103 5 2 2875 2977 395077836 395077936 1.970000e-32 150.0
22 TraesCS6D01G296100 chrUn 78.168 513 94 14 1503 2009 429907082 429906582 8.540000e-81 311.0
23 TraesCS6D01G296100 chr2D 95.385 195 6 3 2981 3172 33937784 33937978 1.110000e-79 307.0
24 TraesCS6D01G296100 chr2D 95.385 195 6 3 2981 3172 630274257 630274451 1.110000e-79 307.0
25 TraesCS6D01G296100 chr2D 94.286 105 2 4 2874 2975 567048074 567047971 1.180000e-34 158.0
26 TraesCS6D01G296100 chr1D 95.385 195 6 3 2981 3172 254420698 254420892 1.110000e-79 307.0
27 TraesCS6D01G296100 chr1D 95.385 195 6 3 2981 3172 459909862 459909668 1.110000e-79 307.0
28 TraesCS6D01G296100 chr5D 94.231 104 4 2 2874 2977 302870302 302870201 1.180000e-34 158.0
29 TraesCS6D01G296100 chr2B 94.175 103 4 2 2875 2975 680045952 680045850 4.240000e-34 156.0
30 TraesCS6D01G296100 chr2A 94.231 104 2 4 2875 2975 706893960 706893858 4.240000e-34 156.0
31 TraesCS6D01G296100 chr3B 94.118 102 5 1 2866 2967 683521133 683521233 1.520000e-33 154.0
32 TraesCS6D01G296100 chr4A 90.991 111 7 3 2876 2983 17386979 17386869 2.550000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G296100 chr6D 407468873 407472044 3171 True 5858.00 5858 100.000 1 3172 1 chr6D.!!$R1 3171
1 TraesCS6D01G296100 chr6B 611459696 611462361 2665 True 858.25 2798 90.574 135 2973 4 chr6B.!!$R1 2838
2 TraesCS6D01G296100 chr6A 553002792 553005248 2456 True 985.80 2540 91.577 139 2559 3 chr6A.!!$R1 2420
3 TraesCS6D01G296100 chr7D 133827706 133828206 500 False 327.00 327 78.835 1503 2009 1 chr7D.!!$F1 506
4 TraesCS6D01G296100 chrUn 429906582 429907082 500 True 311.00 311 78.168 1503 2009 1 chrUn.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 391 0.038166 TACCGAAGTACTCCCCGTGT 59.962 55.0 0.0 4.24 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2321 0.888619 AATCTCTCAACGAGCACCGA 59.111 50.0 5.53 0.0 41.76 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.344359 GGATCATCTCCTCTAAACCCAC 57.656 50.000 0.00 0.00 41.29 4.61
22 23 3.071747 GGATCATCTCCTCTAAACCCACC 59.928 52.174 0.00 0.00 41.29 4.61
23 24 2.478292 TCATCTCCTCTAAACCCACCC 58.522 52.381 0.00 0.00 0.00 4.61
24 25 1.490910 CATCTCCTCTAAACCCACCCC 59.509 57.143 0.00 0.00 0.00 4.95
25 26 0.797579 TCTCCTCTAAACCCACCCCT 59.202 55.000 0.00 0.00 0.00 4.79
26 27 1.205055 CTCCTCTAAACCCACCCCTC 58.795 60.000 0.00 0.00 0.00 4.30
27 28 0.494551 TCCTCTAAACCCACCCCTCA 59.505 55.000 0.00 0.00 0.00 3.86
28 29 1.132332 TCCTCTAAACCCACCCCTCAA 60.132 52.381 0.00 0.00 0.00 3.02
29 30 1.708551 CCTCTAAACCCACCCCTCAAA 59.291 52.381 0.00 0.00 0.00 2.69
30 31 2.109304 CCTCTAAACCCACCCCTCAAAA 59.891 50.000 0.00 0.00 0.00 2.44
31 32 3.437344 CCTCTAAACCCACCCCTCAAAAA 60.437 47.826 0.00 0.00 0.00 1.94
57 58 6.893020 AAAAATCTCCTCTACACCCACTAT 57.107 37.500 0.00 0.00 0.00 2.12
58 59 6.893020 AAAATCTCCTCTACACCCACTATT 57.107 37.500 0.00 0.00 0.00 1.73
59 60 6.893020 AAATCTCCTCTACACCCACTATTT 57.107 37.500 0.00 0.00 0.00 1.40
60 61 5.878406 ATCTCCTCTACACCCACTATTTG 57.122 43.478 0.00 0.00 0.00 2.32
61 62 3.451178 TCTCCTCTACACCCACTATTTGC 59.549 47.826 0.00 0.00 0.00 3.68
62 63 3.450904 TCCTCTACACCCACTATTTGCT 58.549 45.455 0.00 0.00 0.00 3.91
63 64 3.197766 TCCTCTACACCCACTATTTGCTG 59.802 47.826 0.00 0.00 0.00 4.41
64 65 3.055094 CCTCTACACCCACTATTTGCTGT 60.055 47.826 0.00 0.00 0.00 4.40
65 66 4.184629 CTCTACACCCACTATTTGCTGTC 58.815 47.826 0.00 0.00 0.00 3.51
66 67 2.949177 ACACCCACTATTTGCTGTCA 57.051 45.000 0.00 0.00 0.00 3.58
67 68 3.439857 ACACCCACTATTTGCTGTCAT 57.560 42.857 0.00 0.00 0.00 3.06
68 69 3.347216 ACACCCACTATTTGCTGTCATC 58.653 45.455 0.00 0.00 0.00 2.92
69 70 3.009473 ACACCCACTATTTGCTGTCATCT 59.991 43.478 0.00 0.00 0.00 2.90
70 71 4.225042 ACACCCACTATTTGCTGTCATCTA 59.775 41.667 0.00 0.00 0.00 1.98
71 72 4.813161 CACCCACTATTTGCTGTCATCTAG 59.187 45.833 0.00 0.00 0.00 2.43
72 73 4.471386 ACCCACTATTTGCTGTCATCTAGT 59.529 41.667 0.00 0.00 0.00 2.57
73 74 5.661312 ACCCACTATTTGCTGTCATCTAGTA 59.339 40.000 0.00 0.00 0.00 1.82
74 75 6.183360 ACCCACTATTTGCTGTCATCTAGTAG 60.183 42.308 0.00 0.00 0.00 2.57
75 76 6.219473 CCACTATTTGCTGTCATCTAGTAGG 58.781 44.000 0.00 0.00 0.00 3.18
76 77 6.219473 CACTATTTGCTGTCATCTAGTAGGG 58.781 44.000 0.00 0.00 0.00 3.53
77 78 3.543680 TTTGCTGTCATCTAGTAGGGC 57.456 47.619 0.00 0.00 0.00 5.19
78 79 1.414158 TGCTGTCATCTAGTAGGGCC 58.586 55.000 0.00 0.00 0.00 5.80
79 80 1.062886 TGCTGTCATCTAGTAGGGCCT 60.063 52.381 12.58 12.58 0.00 5.19
80 81 1.342819 GCTGTCATCTAGTAGGGCCTG 59.657 57.143 18.53 0.00 0.00 4.85
81 82 2.950781 CTGTCATCTAGTAGGGCCTGA 58.049 52.381 18.53 4.78 0.00 3.86
82 83 3.300388 CTGTCATCTAGTAGGGCCTGAA 58.700 50.000 18.53 0.00 0.00 3.02
83 84 3.706594 CTGTCATCTAGTAGGGCCTGAAA 59.293 47.826 18.53 0.00 0.00 2.69
84 85 4.101114 TGTCATCTAGTAGGGCCTGAAAA 58.899 43.478 18.53 0.00 0.00 2.29
85 86 4.081087 TGTCATCTAGTAGGGCCTGAAAAC 60.081 45.833 18.53 6.13 0.00 2.43
86 87 4.162509 GTCATCTAGTAGGGCCTGAAAACT 59.837 45.833 18.53 14.30 0.00 2.66
87 88 4.162320 TCATCTAGTAGGGCCTGAAAACTG 59.838 45.833 18.53 7.43 0.00 3.16
88 89 3.786553 TCTAGTAGGGCCTGAAAACTGA 58.213 45.455 18.53 8.94 0.00 3.41
89 90 4.164981 TCTAGTAGGGCCTGAAAACTGAA 58.835 43.478 18.53 1.36 0.00 3.02
90 91 3.876309 AGTAGGGCCTGAAAACTGAAA 57.124 42.857 18.53 0.00 0.00 2.69
91 92 4.178956 AGTAGGGCCTGAAAACTGAAAA 57.821 40.909 18.53 0.00 0.00 2.29
92 93 4.145052 AGTAGGGCCTGAAAACTGAAAAG 58.855 43.478 18.53 0.00 0.00 2.27
93 94 3.032265 AGGGCCTGAAAACTGAAAAGT 57.968 42.857 4.50 0.00 0.00 2.66
94 95 2.959030 AGGGCCTGAAAACTGAAAAGTC 59.041 45.455 4.50 0.00 0.00 3.01
95 96 2.035961 GGGCCTGAAAACTGAAAAGTCC 59.964 50.000 0.84 0.00 0.00 3.85
96 97 2.693074 GGCCTGAAAACTGAAAAGTCCA 59.307 45.455 0.00 0.00 0.00 4.02
97 98 3.132111 GGCCTGAAAACTGAAAAGTCCAA 59.868 43.478 0.00 0.00 0.00 3.53
98 99 4.202253 GGCCTGAAAACTGAAAAGTCCAAT 60.202 41.667 0.00 0.00 0.00 3.16
99 100 5.359756 GCCTGAAAACTGAAAAGTCCAATT 58.640 37.500 0.00 0.00 0.00 2.32
100 101 6.462347 GGCCTGAAAACTGAAAAGTCCAATTA 60.462 38.462 0.00 0.00 0.00 1.40
101 102 6.420903 GCCTGAAAACTGAAAAGTCCAATTAC 59.579 38.462 0.00 0.00 0.00 1.89
102 103 6.636850 CCTGAAAACTGAAAAGTCCAATTACG 59.363 38.462 0.00 0.00 0.00 3.18
103 104 7.090953 TGAAAACTGAAAAGTCCAATTACGT 57.909 32.000 0.00 0.00 0.00 3.57
104 105 8.211116 TGAAAACTGAAAAGTCCAATTACGTA 57.789 30.769 0.00 0.00 0.00 3.57
105 106 8.124199 TGAAAACTGAAAAGTCCAATTACGTAC 58.876 33.333 0.00 0.00 0.00 3.67
106 107 5.834239 ACTGAAAAGTCCAATTACGTACG 57.166 39.130 15.01 15.01 0.00 3.67
107 108 4.687483 ACTGAAAAGTCCAATTACGTACGG 59.313 41.667 21.06 0.37 0.00 4.02
108 109 4.630111 TGAAAAGTCCAATTACGTACGGT 58.370 39.130 21.06 7.87 0.00 4.83
109 110 5.777802 TGAAAAGTCCAATTACGTACGGTA 58.222 37.500 21.06 7.15 0.00 4.02
110 111 5.863397 TGAAAAGTCCAATTACGTACGGTAG 59.137 40.000 21.06 4.45 31.46 3.18
111 112 5.643379 AAAGTCCAATTACGTACGGTAGA 57.357 39.130 21.06 4.50 31.46 2.59
112 113 5.643379 AAGTCCAATTACGTACGGTAGAA 57.357 39.130 21.06 8.32 31.46 2.10
113 114 5.240713 AGTCCAATTACGTACGGTAGAAG 57.759 43.478 21.06 4.26 31.46 2.85
114 115 4.943705 AGTCCAATTACGTACGGTAGAAGA 59.056 41.667 21.06 6.69 31.46 2.87
115 116 5.591877 AGTCCAATTACGTACGGTAGAAGAT 59.408 40.000 21.06 0.00 31.46 2.40
116 117 5.684626 GTCCAATTACGTACGGTAGAAGATG 59.315 44.000 21.06 10.43 31.46 2.90
117 118 5.589855 TCCAATTACGTACGGTAGAAGATGA 59.410 40.000 21.06 2.12 31.46 2.92
118 119 5.684626 CCAATTACGTACGGTAGAAGATGAC 59.315 44.000 21.06 0.00 31.46 3.06
119 120 6.260377 CAATTACGTACGGTAGAAGATGACA 58.740 40.000 21.06 0.00 31.46 3.58
120 121 3.754188 ACGTACGGTAGAAGATGACAC 57.246 47.619 21.06 0.00 0.00 3.67
121 122 2.094894 ACGTACGGTAGAAGATGACACG 59.905 50.000 21.06 0.00 0.00 4.49
122 123 2.349580 CGTACGGTAGAAGATGACACGA 59.650 50.000 7.57 0.00 0.00 4.35
123 124 3.002042 CGTACGGTAGAAGATGACACGAT 59.998 47.826 7.57 0.00 0.00 3.73
124 125 4.209911 CGTACGGTAGAAGATGACACGATA 59.790 45.833 7.57 0.00 0.00 2.92
125 126 4.815040 ACGGTAGAAGATGACACGATAG 57.185 45.455 0.00 0.00 46.19 2.08
126 127 4.449131 ACGGTAGAAGATGACACGATAGA 58.551 43.478 0.00 0.00 41.38 1.98
127 128 5.064558 ACGGTAGAAGATGACACGATAGAT 58.935 41.667 0.00 0.00 41.38 1.98
128 129 5.049336 ACGGTAGAAGATGACACGATAGATG 60.049 44.000 0.00 0.00 41.38 2.90
129 130 5.157781 GGTAGAAGATGACACGATAGATGC 58.842 45.833 0.00 0.00 41.38 3.91
130 131 5.048364 GGTAGAAGATGACACGATAGATGCT 60.048 44.000 0.00 0.00 41.38 3.79
131 132 5.528043 AGAAGATGACACGATAGATGCTT 57.472 39.130 0.00 0.00 41.38 3.91
132 133 5.911752 AGAAGATGACACGATAGATGCTTT 58.088 37.500 0.00 0.00 41.38 3.51
133 134 6.344500 AGAAGATGACACGATAGATGCTTTT 58.656 36.000 0.00 0.00 41.38 2.27
134 135 6.820656 AGAAGATGACACGATAGATGCTTTTT 59.179 34.615 0.00 0.00 41.38 1.94
135 136 6.595772 AGATGACACGATAGATGCTTTTTC 57.404 37.500 0.00 0.00 41.38 2.29
136 137 6.344500 AGATGACACGATAGATGCTTTTTCT 58.656 36.000 0.00 0.00 41.38 2.52
137 138 6.820656 AGATGACACGATAGATGCTTTTTCTT 59.179 34.615 0.00 0.00 41.38 2.52
138 139 7.981789 AGATGACACGATAGATGCTTTTTCTTA 59.018 33.333 0.00 0.00 41.38 2.10
150 151 3.977579 GCTTTTTCTTAAGTGCTGTGAGC 59.022 43.478 1.63 0.00 42.82 4.26
156 157 2.786539 TAAGTGCTGTGAGCCCTGCG 62.787 60.000 0.00 0.00 41.51 5.18
229 233 1.783284 TTCGCGTAGATGATCATGGC 58.217 50.000 14.30 9.89 0.00 4.40
239 243 7.622256 GCGTAGATGATCATGGCTTAACATAAC 60.622 40.741 14.30 0.00 0.00 1.89
258 262 2.110213 TGCACTGTTCCACGGTCC 59.890 61.111 0.00 0.00 35.04 4.46
383 391 0.038166 TACCGAAGTACTCCCCGTGT 59.962 55.000 0.00 4.24 0.00 4.49
392 400 2.524640 TCCCCGTGTACTGTGCCA 60.525 61.111 0.00 0.00 0.00 4.92
393 401 1.899437 CTCCCCGTGTACTGTGCCAT 61.899 60.000 0.00 0.00 0.00 4.40
394 402 0.615261 TCCCCGTGTACTGTGCCATA 60.615 55.000 0.00 0.00 0.00 2.74
396 404 0.248012 CCCGTGTACTGTGCCATACA 59.752 55.000 0.00 0.00 37.78 2.29
399 407 2.611971 CCGTGTACTGTGCCATACAACT 60.612 50.000 0.00 0.00 39.20 3.16
400 408 2.411748 CGTGTACTGTGCCATACAACTG 59.588 50.000 0.00 0.00 39.20 3.16
401 409 3.399330 GTGTACTGTGCCATACAACTGT 58.601 45.455 0.00 0.00 39.20 3.55
402 410 3.813166 GTGTACTGTGCCATACAACTGTT 59.187 43.478 0.00 0.00 39.20 3.16
403 411 4.062293 TGTACTGTGCCATACAACTGTTC 58.938 43.478 0.00 0.00 39.20 3.18
404 412 2.143122 ACTGTGCCATACAACTGTTCG 58.857 47.619 0.00 0.00 39.20 3.95
405 413 0.871722 TGTGCCATACAACTGTTCGC 59.128 50.000 0.00 0.00 36.06 4.70
407 415 0.250510 TGCCATACAACTGTTCGCCA 60.251 50.000 0.00 0.00 0.00 5.69
408 416 1.094785 GCCATACAACTGTTCGCCAT 58.905 50.000 0.00 0.00 0.00 4.40
409 417 2.285083 GCCATACAACTGTTCGCCATA 58.715 47.619 0.00 0.00 0.00 2.74
410 418 2.031683 GCCATACAACTGTTCGCCATAC 59.968 50.000 0.00 0.00 0.00 2.39
411 419 3.531538 CCATACAACTGTTCGCCATACT 58.468 45.455 0.00 0.00 0.00 2.12
412 420 3.555956 CCATACAACTGTTCGCCATACTC 59.444 47.826 0.00 0.00 0.00 2.59
413 421 2.831685 ACAACTGTTCGCCATACTCA 57.168 45.000 0.00 0.00 0.00 3.41
414 422 2.413837 ACAACTGTTCGCCATACTCAC 58.586 47.619 0.00 0.00 0.00 3.51
415 423 1.732259 CAACTGTTCGCCATACTCACC 59.268 52.381 0.00 0.00 0.00 4.02
416 424 0.108804 ACTGTTCGCCATACTCACCG 60.109 55.000 0.00 0.00 0.00 4.94
417 425 0.806102 CTGTTCGCCATACTCACCGG 60.806 60.000 0.00 0.00 0.00 5.28
418 426 1.252215 TGTTCGCCATACTCACCGGA 61.252 55.000 9.46 0.00 0.00 5.14
419 427 0.104304 GTTCGCCATACTCACCGGAT 59.896 55.000 9.46 0.00 0.00 4.18
422 430 0.318441 CGCCATACTCACCGGATCAT 59.682 55.000 9.46 0.00 0.00 2.45
435 443 2.517875 ATCATGAAGCAGCCCGCC 60.518 61.111 0.00 0.00 44.04 6.13
440 448 4.704833 GAAGCAGCCCGCCAGTGA 62.705 66.667 0.00 0.00 44.04 3.41
514 532 1.176527 ACGTTCGTATTCCTTCCCGA 58.823 50.000 0.00 0.00 0.00 5.14
515 533 1.753073 ACGTTCGTATTCCTTCCCGAT 59.247 47.619 0.00 0.00 0.00 4.18
516 534 2.167075 ACGTTCGTATTCCTTCCCGATT 59.833 45.455 0.00 0.00 0.00 3.34
517 535 2.793232 CGTTCGTATTCCTTCCCGATTC 59.207 50.000 0.00 0.00 0.00 2.52
518 536 3.129109 GTTCGTATTCCTTCCCGATTCC 58.871 50.000 0.00 0.00 0.00 3.01
519 537 1.690352 TCGTATTCCTTCCCGATTCCC 59.310 52.381 0.00 0.00 0.00 3.97
520 538 1.604693 CGTATTCCTTCCCGATTCCCG 60.605 57.143 0.00 0.00 38.18 5.14
532 550 3.622060 ATTCCCGTTCCCGTGCTGG 62.622 63.158 0.00 0.00 37.55 4.85
725 744 1.897133 GACGGGGCAAAAGGGTAATTT 59.103 47.619 0.00 0.00 0.00 1.82
726 745 3.090790 GACGGGGCAAAAGGGTAATTTA 58.909 45.455 0.00 0.00 0.00 1.40
727 746 2.827322 ACGGGGCAAAAGGGTAATTTAC 59.173 45.455 0.00 0.00 0.00 2.01
745 764 1.682684 CCCTCCCGACTACAGCTGT 60.683 63.158 25.12 25.12 0.00 4.40
747 766 1.513158 CTCCCGACTACAGCTGTGG 59.487 63.158 29.57 28.12 0.00 4.17
793 812 2.048503 GTCAGTGACCGTTCGGGG 60.049 66.667 12.54 0.00 41.60 5.73
852 872 1.686355 TGGCCGCAGAAAGAAAGAAA 58.314 45.000 0.00 0.00 0.00 2.52
853 873 1.608590 TGGCCGCAGAAAGAAAGAAAG 59.391 47.619 0.00 0.00 0.00 2.62
854 874 1.880027 GGCCGCAGAAAGAAAGAAAGA 59.120 47.619 0.00 0.00 0.00 2.52
855 875 2.293399 GGCCGCAGAAAGAAAGAAAGAA 59.707 45.455 0.00 0.00 0.00 2.52
856 876 3.243401 GGCCGCAGAAAGAAAGAAAGAAA 60.243 43.478 0.00 0.00 0.00 2.52
857 877 4.359706 GCCGCAGAAAGAAAGAAAGAAAA 58.640 39.130 0.00 0.00 0.00 2.29
909 930 4.832608 GCGGTGGATGTCCCGTCC 62.833 72.222 0.00 0.00 45.91 4.79
910 931 4.157120 CGGTGGATGTCCCGTCCC 62.157 72.222 0.00 0.00 38.69 4.46
924 945 2.064581 GTCCCTCGGTACCATGCCT 61.065 63.158 13.54 0.00 0.00 4.75
954 975 1.594310 GGTGCTCCACTGTCTCTCC 59.406 63.158 0.00 0.00 34.40 3.71
955 976 1.594310 GTGCTCCACTGTCTCTCCC 59.406 63.158 0.00 0.00 0.00 4.30
956 977 0.902516 GTGCTCCACTGTCTCTCCCT 60.903 60.000 0.00 0.00 0.00 4.20
957 978 0.178921 TGCTCCACTGTCTCTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
958 979 0.534873 GCTCCACTGTCTCTCCCTTC 59.465 60.000 0.00 0.00 0.00 3.46
959 980 1.190643 CTCCACTGTCTCTCCCTTCC 58.809 60.000 0.00 0.00 0.00 3.46
1050 1071 2.621556 AGGCAAGAAGAGGAGAGACT 57.378 50.000 0.00 0.00 0.00 3.24
1058 1079 0.040499 AGAGGAGAGACTCACCACCC 59.960 60.000 19.58 9.14 39.97 4.61
1089 1110 0.673644 CAATGGCGTCCTTCGGTTCT 60.674 55.000 0.00 0.00 40.26 3.01
1092 1113 0.458669 TGGCGTCCTTCGGTTCTATC 59.541 55.000 0.00 0.00 40.26 2.08
1200 1221 2.039746 CACCATGAAGTACCACAAGGGA 59.960 50.000 13.16 0.00 41.15 4.20
1290 1311 1.154263 CGTCACCGACTTCGTCTCC 60.154 63.158 0.00 0.00 37.74 3.71
1296 1317 1.061253 CGACTTCGTCTCCTCGCTC 59.939 63.158 0.00 0.00 34.11 5.03
1297 1318 1.061253 GACTTCGTCTCCTCGCTCG 59.939 63.158 0.00 0.00 0.00 5.03
1298 1319 2.277628 CTTCGTCTCCTCGCTCGC 60.278 66.667 0.00 0.00 0.00 5.03
1299 1320 3.743091 CTTCGTCTCCTCGCTCGCC 62.743 68.421 0.00 0.00 0.00 5.54
1300 1321 4.779966 TCGTCTCCTCGCTCGCCT 62.780 66.667 0.00 0.00 0.00 5.52
1301 1322 4.244802 CGTCTCCTCGCTCGCCTC 62.245 72.222 0.00 0.00 0.00 4.70
1479 1506 2.126307 CGTGACCTCGTCAGGCTG 60.126 66.667 8.58 8.58 43.57 4.85
1694 1721 4.530857 GCAGTACGGCCCGCAGAT 62.531 66.667 1.23 0.00 0.00 2.90
2013 2040 3.400054 ACCTTGGGGTAGGCTCGC 61.400 66.667 0.00 0.00 45.32 5.03
2014 2041 3.083997 CCTTGGGGTAGGCTCGCT 61.084 66.667 0.00 0.00 0.00 4.93
2018 2045 2.517875 GGGGTAGGCTCGCTCGTA 60.518 66.667 0.00 0.00 0.00 3.43
2019 2046 2.553727 GGGGTAGGCTCGCTCGTAG 61.554 68.421 0.00 0.00 0.00 3.51
2020 2047 2.553727 GGGTAGGCTCGCTCGTAGG 61.554 68.421 0.00 0.00 0.00 3.18
2021 2048 2.332159 GTAGGCTCGCTCGTAGGC 59.668 66.667 0.00 7.01 39.70 3.93
2206 2321 6.016276 AGAGCATTGTTCGGAAACTAACATTT 60.016 34.615 0.00 0.00 44.33 2.32
2207 2322 6.149633 AGCATTGTTCGGAAACTAACATTTC 58.850 36.000 0.00 0.00 44.33 2.17
2208 2323 5.059221 GCATTGTTCGGAAACTAACATTTCG 59.941 40.000 0.00 0.00 44.33 3.46
2209 2324 4.735662 TGTTCGGAAACTAACATTTCGG 57.264 40.909 0.00 0.00 40.64 4.30
2210 2325 4.128643 TGTTCGGAAACTAACATTTCGGT 58.871 39.130 0.00 0.00 40.64 4.69
2211 2326 4.024725 TGTTCGGAAACTAACATTTCGGTG 60.025 41.667 0.00 0.00 40.64 4.94
2212 2327 2.481185 TCGGAAACTAACATTTCGGTGC 59.519 45.455 5.92 0.00 39.13 5.01
2213 2328 2.482721 CGGAAACTAACATTTCGGTGCT 59.517 45.455 0.00 0.00 39.13 4.40
2214 2329 3.424433 CGGAAACTAACATTTCGGTGCTC 60.424 47.826 0.00 0.00 39.13 4.26
2215 2330 3.424433 GGAAACTAACATTTCGGTGCTCG 60.424 47.826 0.00 0.00 39.13 5.03
2217 2332 2.762745 ACTAACATTTCGGTGCTCGTT 58.237 42.857 0.54 0.00 40.32 3.85
2218 2333 2.478894 ACTAACATTTCGGTGCTCGTTG 59.521 45.455 0.54 1.25 40.32 4.10
2219 2334 1.588674 AACATTTCGGTGCTCGTTGA 58.411 45.000 0.54 0.00 40.32 3.18
2220 2335 1.148310 ACATTTCGGTGCTCGTTGAG 58.852 50.000 0.54 0.00 40.32 3.02
2221 2336 1.270094 ACATTTCGGTGCTCGTTGAGA 60.270 47.619 0.00 0.00 40.32 3.27
2265 2403 5.303333 AGCATCCATCAAAATGACATGCATA 59.697 36.000 17.31 0.00 44.00 3.14
2266 2404 5.633601 GCATCCATCAAAATGACATGCATAG 59.366 40.000 0.00 0.00 42.64 2.23
2271 2409 7.227314 TCCATCAAAATGACATGCATAGAGTAC 59.773 37.037 0.00 0.00 35.78 2.73
2273 2411 7.543947 TCAAAATGACATGCATAGAGTACTG 57.456 36.000 0.00 0.00 35.78 2.74
2305 2443 1.920610 ACCGAGGGAAGGGATATACG 58.079 55.000 0.00 0.00 0.00 3.06
2306 2444 1.146566 ACCGAGGGAAGGGATATACGT 59.853 52.381 0.00 0.00 0.00 3.57
2307 2445 2.376518 ACCGAGGGAAGGGATATACGTA 59.623 50.000 0.00 0.00 0.00 3.57
2361 2531 4.290093 ACAGATGACCTCCAGCTAACATA 58.710 43.478 0.00 0.00 39.96 2.29
2364 2534 6.115446 CAGATGACCTCCAGCTAACATAAAA 58.885 40.000 0.00 0.00 39.96 1.52
2365 2535 6.769822 CAGATGACCTCCAGCTAACATAAAAT 59.230 38.462 0.00 0.00 39.96 1.82
2369 2539 7.630082 TGACCTCCAGCTAACATAAAATAACT 58.370 34.615 0.00 0.00 0.00 2.24
2372 2542 9.561069 ACCTCCAGCTAACATAAAATAACTATG 57.439 33.333 0.00 0.00 33.71 2.23
2373 2543 9.561069 CCTCCAGCTAACATAAAATAACTATGT 57.439 33.333 0.00 0.00 40.84 2.29
2466 2636 0.867746 TGTCATGTGCGAGCAGAAAC 59.132 50.000 0.00 1.34 0.00 2.78
2547 2718 8.908903 ACGAAGATGTAGAGATTCAGAACTAAT 58.091 33.333 0.00 0.00 0.00 1.73
2548 2719 9.179552 CGAAGATGTAGAGATTCAGAACTAATG 57.820 37.037 0.00 0.00 0.00 1.90
2559 2730 6.545504 TTCAGAACTAATGAAACTGCAGTC 57.454 37.500 21.95 9.40 33.85 3.51
2560 2731 4.686091 TCAGAACTAATGAAACTGCAGTCG 59.314 41.667 21.95 5.46 0.00 4.18
2561 2732 3.433615 AGAACTAATGAAACTGCAGTCGC 59.566 43.478 21.95 15.47 39.24 5.19
2562 2733 2.076863 ACTAATGAAACTGCAGTCGCC 58.923 47.619 21.95 12.57 37.32 5.54
2563 2734 2.289694 ACTAATGAAACTGCAGTCGCCT 60.290 45.455 21.95 0.24 37.32 5.52
2564 2735 0.877071 AATGAAACTGCAGTCGCCTG 59.123 50.000 21.95 0.00 41.91 4.85
2572 2743 2.551270 CAGTCGCCTGCACGAAAC 59.449 61.111 0.48 0.00 44.93 2.78
2573 2744 2.665185 AGTCGCCTGCACGAAACC 60.665 61.111 0.48 0.00 44.93 3.27
2574 2745 4.072088 GTCGCCTGCACGAAACCG 62.072 66.667 0.48 0.00 44.93 4.44
2578 2749 4.323477 CCTGCACGAAACCGGGGA 62.323 66.667 6.32 0.00 0.00 4.81
2579 2750 2.742372 CTGCACGAAACCGGGGAG 60.742 66.667 6.32 0.00 42.18 4.30
2580 2751 3.235481 TGCACGAAACCGGGGAGA 61.235 61.111 6.32 0.00 0.00 3.71
2581 2752 2.741211 GCACGAAACCGGGGAGAC 60.741 66.667 6.32 0.00 0.00 3.36
2582 2753 2.431942 CACGAAACCGGGGAGACG 60.432 66.667 6.32 6.82 0.00 4.18
2583 2754 4.368543 ACGAAACCGGGGAGACGC 62.369 66.667 6.32 0.00 40.49 5.19
2585 2756 3.703127 GAAACCGGGGAGACGCCT 61.703 66.667 6.32 0.00 40.89 5.52
2586 2757 3.952628 GAAACCGGGGAGACGCCTG 62.953 68.421 6.32 0.00 40.89 4.85
2609 2780 2.202797 CCTGGACGGACTGCATCG 60.203 66.667 0.00 0.00 33.16 3.84
2619 2790 1.406069 GGACTGCATCGTCTTCATGGT 60.406 52.381 6.11 0.00 34.38 3.55
2623 2794 3.055819 ACTGCATCGTCTTCATGGTACTT 60.056 43.478 0.00 0.00 0.00 2.24
2655 2826 6.687105 GCATGGTTAGCGTTGAAATAAACTAG 59.313 38.462 0.00 0.00 0.00 2.57
2657 2828 7.355332 TGGTTAGCGTTGAAATAAACTAGTC 57.645 36.000 0.00 0.00 0.00 2.59
2658 2829 7.156673 TGGTTAGCGTTGAAATAAACTAGTCT 58.843 34.615 0.00 0.00 0.00 3.24
2659 2830 7.330208 TGGTTAGCGTTGAAATAAACTAGTCTC 59.670 37.037 0.00 0.00 0.00 3.36
2660 2831 7.381839 GTTAGCGTTGAAATAAACTAGTCTCG 58.618 38.462 0.00 0.00 0.00 4.04
2661 2832 4.326548 AGCGTTGAAATAAACTAGTCTCGC 59.673 41.667 0.00 4.29 35.78 5.03
2662 2833 4.775083 GCGTTGAAATAAACTAGTCTCGCG 60.775 45.833 0.00 0.00 0.00 5.87
2663 2834 4.322804 CGTTGAAATAAACTAGTCTCGCGT 59.677 41.667 5.77 0.00 0.00 6.01
2664 2835 5.496657 CGTTGAAATAAACTAGTCTCGCGTC 60.497 44.000 5.77 0.00 0.00 5.19
2666 2837 3.433513 AATAAACTAGTCTCGCGTCCC 57.566 47.619 5.77 0.00 0.00 4.46
2667 2838 0.729116 TAAACTAGTCTCGCGTCCCG 59.271 55.000 5.77 0.00 38.61 5.14
2677 2848 4.508128 GCGTCCCGGCGATGAGAA 62.508 66.667 9.30 0.00 0.00 2.87
2678 2849 2.183300 CGTCCCGGCGATGAGAAA 59.817 61.111 9.30 0.00 0.00 2.52
2679 2850 2.165301 CGTCCCGGCGATGAGAAAC 61.165 63.158 9.30 0.00 0.00 2.78
2681 2852 2.183300 CCCGGCGATGAGAAACGA 59.817 61.111 9.30 0.00 0.00 3.85
2682 2853 1.447140 CCCGGCGATGAGAAACGAA 60.447 57.895 9.30 0.00 0.00 3.85
2683 2854 1.017177 CCCGGCGATGAGAAACGAAA 61.017 55.000 9.30 0.00 0.00 3.46
2684 2855 0.094730 CCGGCGATGAGAAACGAAAC 59.905 55.000 9.30 0.00 0.00 2.78
2685 2856 1.068474 CGGCGATGAGAAACGAAACT 58.932 50.000 0.00 0.00 0.00 2.66
2686 2857 1.201812 CGGCGATGAGAAACGAAACTG 60.202 52.381 0.00 0.00 0.00 3.16
2687 2858 1.464189 GGCGATGAGAAACGAAACTGC 60.464 52.381 0.00 0.00 0.00 4.40
2688 2859 1.461127 GCGATGAGAAACGAAACTGCT 59.539 47.619 0.00 0.00 0.00 4.24
2689 2860 2.473049 GCGATGAGAAACGAAACTGCTC 60.473 50.000 0.00 0.00 0.00 4.26
2690 2861 2.989840 CGATGAGAAACGAAACTGCTCT 59.010 45.455 0.00 0.00 0.00 4.09
2691 2862 3.181536 CGATGAGAAACGAAACTGCTCTG 60.182 47.826 0.00 0.00 0.00 3.35
2692 2863 3.179443 TGAGAAACGAAACTGCTCTGT 57.821 42.857 0.00 0.00 0.00 3.41
2693 2864 2.866156 TGAGAAACGAAACTGCTCTGTG 59.134 45.455 0.00 0.00 0.00 3.66
2694 2865 2.213499 AGAAACGAAACTGCTCTGTGG 58.787 47.619 0.00 0.00 0.00 4.17
2695 2866 1.264288 GAAACGAAACTGCTCTGTGGG 59.736 52.381 0.00 0.00 0.00 4.61
2696 2867 1.166531 AACGAAACTGCTCTGTGGGC 61.167 55.000 0.00 0.00 0.00 5.36
2697 2868 2.671177 CGAAACTGCTCTGTGGGCG 61.671 63.158 0.00 0.00 0.00 6.13
2698 2869 1.301716 GAAACTGCTCTGTGGGCGA 60.302 57.895 0.00 0.00 0.00 5.54
2699 2870 1.294659 GAAACTGCTCTGTGGGCGAG 61.295 60.000 0.00 0.00 0.00 5.03
2700 2871 2.044806 AAACTGCTCTGTGGGCGAGT 62.045 55.000 0.00 0.00 0.00 4.18
2701 2872 2.044806 AACTGCTCTGTGGGCGAGTT 62.045 55.000 0.00 0.00 0.00 3.01
2702 2873 2.031012 TGCTCTGTGGGCGAGTTG 59.969 61.111 0.00 0.00 0.00 3.16
2703 2874 2.343758 GCTCTGTGGGCGAGTTGA 59.656 61.111 0.00 0.00 0.00 3.18
2704 2875 1.078848 GCTCTGTGGGCGAGTTGAT 60.079 57.895 0.00 0.00 0.00 2.57
2705 2876 1.086634 GCTCTGTGGGCGAGTTGATC 61.087 60.000 0.00 0.00 0.00 2.92
2706 2877 0.460987 CTCTGTGGGCGAGTTGATCC 60.461 60.000 0.00 0.00 0.00 3.36
2707 2878 1.191489 TCTGTGGGCGAGTTGATCCA 61.191 55.000 0.00 0.00 0.00 3.41
2708 2879 3.890674 GTGGGCGAGTTGATCCAC 58.109 61.111 7.35 7.35 42.11 4.02
2709 2880 2.100631 GTGGGCGAGTTGATCCACG 61.101 63.158 7.35 0.00 39.97 4.94
2712 2883 3.084579 GCGAGTTGATCCACGCTG 58.915 61.111 12.92 3.15 46.06 5.18
2713 2884 1.738099 GCGAGTTGATCCACGCTGT 60.738 57.895 12.92 0.00 46.06 4.40
2714 2885 1.687494 GCGAGTTGATCCACGCTGTC 61.687 60.000 12.92 0.00 46.06 3.51
2715 2886 1.406219 CGAGTTGATCCACGCTGTCG 61.406 60.000 0.00 0.00 42.43 4.35
2725 2896 4.422506 CGCTGTCGTGCACAAATC 57.577 55.556 18.64 4.23 33.31 2.17
2726 2897 1.507713 CGCTGTCGTGCACAAATCG 60.508 57.895 18.64 9.20 33.31 3.34
2727 2898 1.569493 GCTGTCGTGCACAAATCGT 59.431 52.632 18.64 0.00 33.31 3.73
2728 2899 0.451135 GCTGTCGTGCACAAATCGTC 60.451 55.000 18.64 0.62 33.31 4.20
2729 2900 0.163788 CTGTCGTGCACAAATCGTCC 59.836 55.000 18.64 0.00 33.31 4.79
2730 2901 0.530870 TGTCGTGCACAAATCGTCCA 60.531 50.000 18.64 1.57 29.30 4.02
2731 2902 0.110823 GTCGTGCACAAATCGTCCAC 60.111 55.000 18.64 0.00 0.00 4.02
2732 2903 0.530870 TCGTGCACAAATCGTCCACA 60.531 50.000 18.64 0.00 0.00 4.17
2733 2904 0.384230 CGTGCACAAATCGTCCACAC 60.384 55.000 18.64 0.00 0.00 3.82
2734 2905 0.660488 GTGCACAAATCGTCCACACA 59.340 50.000 13.17 0.00 0.00 3.72
2735 2906 1.064803 GTGCACAAATCGTCCACACAA 59.935 47.619 13.17 0.00 0.00 3.33
2736 2907 1.064803 TGCACAAATCGTCCACACAAC 59.935 47.619 0.00 0.00 0.00 3.32
2737 2908 1.064803 GCACAAATCGTCCACACAACA 59.935 47.619 0.00 0.00 0.00 3.33
2738 2909 2.287547 GCACAAATCGTCCACACAACAT 60.288 45.455 0.00 0.00 0.00 2.71
2739 2910 3.554524 CACAAATCGTCCACACAACATC 58.445 45.455 0.00 0.00 0.00 3.06
2740 2911 2.223144 ACAAATCGTCCACACAACATCG 59.777 45.455 0.00 0.00 0.00 3.84
2741 2912 2.163818 AATCGTCCACACAACATCGT 57.836 45.000 0.00 0.00 0.00 3.73
2742 2913 1.428448 ATCGTCCACACAACATCGTG 58.572 50.000 0.00 0.00 42.81 4.35
2743 2914 1.204062 CGTCCACACAACATCGTGC 59.796 57.895 0.00 0.00 40.73 5.34
2744 2915 1.204062 GTCCACACAACATCGTGCG 59.796 57.895 0.00 0.00 40.73 5.34
2745 2916 2.127270 CCACACAACATCGTGCGC 60.127 61.111 0.00 0.00 40.73 6.09
2746 2917 2.630872 CACACAACATCGTGCGCA 59.369 55.556 5.66 5.66 40.73 6.09
2747 2918 1.207339 CACACAACATCGTGCGCAT 59.793 52.632 15.91 0.00 40.73 4.73
2748 2919 0.441921 CACACAACATCGTGCGCATA 59.558 50.000 15.91 5.42 40.73 3.14
2749 2920 0.721154 ACACAACATCGTGCGCATAG 59.279 50.000 15.91 11.86 40.73 2.23
2773 2944 2.093467 GTGCTCGATGAGAAAAGTCTGC 59.907 50.000 0.00 0.00 32.80 4.26
2776 2947 1.002366 CGATGAGAAAAGTCTGCGGG 58.998 55.000 0.00 0.00 32.80 6.13
2783 2954 0.106918 AAAAGTCTGCGGGGTCACAA 60.107 50.000 0.00 0.00 0.00 3.33
2793 2964 1.135315 CGGGGTCACAATGAAATGCAG 60.135 52.381 0.00 0.00 0.00 4.41
2794 2965 2.170166 GGGGTCACAATGAAATGCAGA 58.830 47.619 0.00 0.00 0.00 4.26
2795 2966 2.562298 GGGGTCACAATGAAATGCAGAA 59.438 45.455 0.00 0.00 0.00 3.02
2797 2968 4.322953 GGGGTCACAATGAAATGCAGAAAT 60.323 41.667 0.00 0.00 0.00 2.17
2798 2969 5.105392 GGGGTCACAATGAAATGCAGAAATA 60.105 40.000 0.00 0.00 0.00 1.40
2799 2970 6.397272 GGGTCACAATGAAATGCAGAAATAA 58.603 36.000 0.00 0.00 0.00 1.40
2800 2971 6.532657 GGGTCACAATGAAATGCAGAAATAAG 59.467 38.462 0.00 0.00 0.00 1.73
2801 2972 6.532657 GGTCACAATGAAATGCAGAAATAAGG 59.467 38.462 0.00 0.00 0.00 2.69
2802 2973 6.532657 GTCACAATGAAATGCAGAAATAAGGG 59.467 38.462 0.00 0.00 0.00 3.95
2803 2974 6.436847 TCACAATGAAATGCAGAAATAAGGGA 59.563 34.615 0.00 0.00 0.00 4.20
2804 2975 7.039152 TCACAATGAAATGCAGAAATAAGGGAA 60.039 33.333 0.00 0.00 0.00 3.97
2805 2976 7.603404 CACAATGAAATGCAGAAATAAGGGAAA 59.397 33.333 0.00 0.00 0.00 3.13
2806 2977 8.323567 ACAATGAAATGCAGAAATAAGGGAAAT 58.676 29.630 0.00 0.00 0.00 2.17
2807 2978 8.609176 CAATGAAATGCAGAAATAAGGGAAATG 58.391 33.333 0.00 0.00 0.00 2.32
2808 2979 6.108015 TGAAATGCAGAAATAAGGGAAATGC 58.892 36.000 0.00 0.00 0.00 3.56
2809 2980 5.680594 AATGCAGAAATAAGGGAAATGCA 57.319 34.783 0.00 0.00 45.22 3.96
2810 2981 5.881923 ATGCAGAAATAAGGGAAATGCAT 57.118 34.783 4.05 4.05 45.00 3.96
2812 2983 6.395426 TGCAGAAATAAGGGAAATGCATAG 57.605 37.500 0.00 0.00 37.28 2.23
2813 2984 5.302568 TGCAGAAATAAGGGAAATGCATAGG 59.697 40.000 0.00 0.00 37.28 2.57
2814 2985 5.536161 GCAGAAATAAGGGAAATGCATAGGA 59.464 40.000 0.00 0.00 32.58 2.94
2815 2986 6.210185 GCAGAAATAAGGGAAATGCATAGGAT 59.790 38.462 0.00 0.00 32.58 3.24
2839 3010 4.604976 CTGATTGGAAATTGAGGCGATTC 58.395 43.478 0.00 0.00 0.00 2.52
2849 3020 5.567138 ATTGAGGCGATTCCAAAGTTAAG 57.433 39.130 0.00 0.00 37.29 1.85
2853 3024 5.642063 TGAGGCGATTCCAAAGTTAAGTAAG 59.358 40.000 0.00 0.00 37.29 2.34
2854 3025 5.557866 AGGCGATTCCAAAGTTAAGTAAGT 58.442 37.500 0.00 0.00 37.29 2.24
2855 3026 6.002082 AGGCGATTCCAAAGTTAAGTAAGTT 58.998 36.000 0.00 0.00 37.29 2.66
2856 3027 6.489022 AGGCGATTCCAAAGTTAAGTAAGTTT 59.511 34.615 0.00 0.00 38.87 2.66
2919 3090 0.328592 AGAGCGGAGGACTGTAGTCA 59.671 55.000 13.51 0.00 46.47 3.41
2940 3111 7.349598 AGTCATTGCAGATAAATCCTTAGGTT 58.650 34.615 0.00 0.00 0.00 3.50
2994 3165 8.894409 TTTTGTTCATTATAGAATGCGTCTTG 57.106 30.769 5.17 0.00 42.01 3.02
2995 3166 7.609760 TTGTTCATTATAGAATGCGTCTTGT 57.390 32.000 5.17 0.00 42.01 3.16
2996 3167 7.609760 TGTTCATTATAGAATGCGTCTTGTT 57.390 32.000 5.17 0.00 42.01 2.83
2997 3168 8.039603 TGTTCATTATAGAATGCGTCTTGTTT 57.960 30.769 5.17 0.00 42.01 2.83
2998 3169 9.157104 TGTTCATTATAGAATGCGTCTTGTTTA 57.843 29.630 5.17 0.00 42.01 2.01
3001 3172 9.764363 TCATTATAGAATGCGTCTTGTTTATCT 57.236 29.630 5.17 0.00 42.01 1.98
3003 3174 6.755461 ATAGAATGCGTCTTGTTTATCTCG 57.245 37.500 0.00 0.00 37.84 4.04
3004 3175 4.744570 AGAATGCGTCTTGTTTATCTCGA 58.255 39.130 0.00 0.00 29.66 4.04
3005 3176 5.168569 AGAATGCGTCTTGTTTATCTCGAA 58.831 37.500 0.00 0.00 29.66 3.71
3006 3177 5.289675 AGAATGCGTCTTGTTTATCTCGAAG 59.710 40.000 0.00 0.00 29.66 3.79
3007 3178 4.168922 TGCGTCTTGTTTATCTCGAAGA 57.831 40.909 0.00 0.00 0.00 2.87
3008 3179 4.552355 TGCGTCTTGTTTATCTCGAAGAA 58.448 39.130 0.00 0.00 34.09 2.52
3009 3180 4.384846 TGCGTCTTGTTTATCTCGAAGAAC 59.615 41.667 0.00 0.00 34.09 3.01
3010 3181 4.621886 GCGTCTTGTTTATCTCGAAGAACT 59.378 41.667 0.00 0.00 34.09 3.01
3011 3182 5.443431 GCGTCTTGTTTATCTCGAAGAACTG 60.443 44.000 0.00 0.00 34.09 3.16
3012 3183 5.061064 CGTCTTGTTTATCTCGAAGAACTGG 59.939 44.000 0.00 0.00 34.09 4.00
3013 3184 5.348997 GTCTTGTTTATCTCGAAGAACTGGG 59.651 44.000 0.00 0.00 34.09 4.45
3014 3185 4.202245 TGTTTATCTCGAAGAACTGGGG 57.798 45.455 0.00 0.00 34.09 4.96
3015 3186 3.055385 TGTTTATCTCGAAGAACTGGGGG 60.055 47.826 0.00 0.00 34.09 5.40
3016 3187 2.840640 TATCTCGAAGAACTGGGGGA 57.159 50.000 0.00 0.00 34.09 4.81
3017 3188 1.952621 ATCTCGAAGAACTGGGGGAA 58.047 50.000 0.00 0.00 34.09 3.97
3018 3189 1.952621 TCTCGAAGAACTGGGGGAAT 58.047 50.000 0.00 0.00 34.09 3.01
3019 3190 3.110293 TCTCGAAGAACTGGGGGAATA 57.890 47.619 0.00 0.00 34.09 1.75
3020 3191 3.654273 TCTCGAAGAACTGGGGGAATAT 58.346 45.455 0.00 0.00 34.09 1.28
3021 3192 3.641906 TCTCGAAGAACTGGGGGAATATC 59.358 47.826 0.00 0.00 34.09 1.63
3022 3193 3.643792 CTCGAAGAACTGGGGGAATATCT 59.356 47.826 0.00 0.00 34.09 1.98
3023 3194 4.811498 TCGAAGAACTGGGGGAATATCTA 58.189 43.478 0.00 0.00 0.00 1.98
3024 3195 5.403512 TCGAAGAACTGGGGGAATATCTAT 58.596 41.667 0.00 0.00 0.00 1.98
3025 3196 5.480772 TCGAAGAACTGGGGGAATATCTATC 59.519 44.000 0.00 0.00 0.00 2.08
3026 3197 5.337652 CGAAGAACTGGGGGAATATCTATCC 60.338 48.000 0.00 0.00 36.16 2.59
3039 3210 8.829373 GGAATATCTATCCCAATGCCTAATTT 57.171 34.615 0.00 0.00 0.00 1.82
3040 3211 9.259832 GGAATATCTATCCCAATGCCTAATTTT 57.740 33.333 0.00 0.00 0.00 1.82
3067 3238 9.906660 TTTACATGTTTAGTAGCTTTTCAATGG 57.093 29.630 2.30 0.00 0.00 3.16
3068 3239 6.389906 ACATGTTTAGTAGCTTTTCAATGGC 58.610 36.000 0.00 0.00 0.00 4.40
3069 3240 6.209391 ACATGTTTAGTAGCTTTTCAATGGCT 59.791 34.615 0.00 0.00 39.74 4.75
3070 3241 6.648879 TGTTTAGTAGCTTTTCAATGGCTT 57.351 33.333 0.00 0.00 37.50 4.35
3071 3242 6.677913 TGTTTAGTAGCTTTTCAATGGCTTC 58.322 36.000 0.00 0.00 37.50 3.86
3072 3243 6.490040 TGTTTAGTAGCTTTTCAATGGCTTCT 59.510 34.615 0.00 0.00 37.45 2.85
3073 3244 6.743575 TTAGTAGCTTTTCAATGGCTTCTC 57.256 37.500 0.00 0.00 35.80 2.87
3074 3245 4.916183 AGTAGCTTTTCAATGGCTTCTCT 58.084 39.130 0.00 0.00 37.50 3.10
3075 3246 5.320277 AGTAGCTTTTCAATGGCTTCTCTT 58.680 37.500 0.00 0.00 37.50 2.85
3076 3247 4.516365 AGCTTTTCAATGGCTTCTCTTG 57.484 40.909 0.00 0.00 31.81 3.02
3077 3248 2.991866 GCTTTTCAATGGCTTCTCTTGC 59.008 45.455 0.00 0.00 0.00 4.01
3084 3255 3.957288 GGCTTCTCTTGCCTTACCA 57.043 52.632 0.00 0.00 46.38 3.25
3085 3256 1.743996 GGCTTCTCTTGCCTTACCAG 58.256 55.000 0.00 0.00 46.38 4.00
3086 3257 1.680249 GGCTTCTCTTGCCTTACCAGG 60.680 57.143 0.00 0.00 46.38 4.45
3087 3258 1.279271 GCTTCTCTTGCCTTACCAGGA 59.721 52.381 0.00 0.00 44.19 3.86
3088 3259 2.290323 GCTTCTCTTGCCTTACCAGGAA 60.290 50.000 0.00 0.00 44.19 3.36
3089 3260 3.623453 GCTTCTCTTGCCTTACCAGGAAT 60.623 47.826 0.00 0.00 44.19 3.01
3090 3261 3.634397 TCTCTTGCCTTACCAGGAATG 57.366 47.619 0.00 0.00 44.19 2.67
3091 3262 3.181329 TCTCTTGCCTTACCAGGAATGA 58.819 45.455 0.00 0.00 44.19 2.57
3092 3263 3.198635 TCTCTTGCCTTACCAGGAATGAG 59.801 47.826 0.00 5.98 45.91 2.90
3093 3264 2.912956 TCTTGCCTTACCAGGAATGAGT 59.087 45.455 0.00 0.00 44.19 3.41
3094 3265 2.787473 TGCCTTACCAGGAATGAGTG 57.213 50.000 0.00 0.00 44.19 3.51
3095 3266 1.281867 TGCCTTACCAGGAATGAGTGG 59.718 52.381 0.00 0.00 44.19 4.00
3097 3268 2.290960 GCCTTACCAGGAATGAGTGGTT 60.291 50.000 0.00 0.00 45.17 3.67
3098 3269 3.814316 GCCTTACCAGGAATGAGTGGTTT 60.814 47.826 0.00 0.00 45.17 3.27
3099 3270 4.407365 CCTTACCAGGAATGAGTGGTTTT 58.593 43.478 0.00 0.00 45.17 2.43
3100 3271 4.218417 CCTTACCAGGAATGAGTGGTTTTG 59.782 45.833 0.00 0.00 45.17 2.44
3101 3272 3.312736 ACCAGGAATGAGTGGTTTTGT 57.687 42.857 0.00 0.00 45.17 2.83
3102 3273 3.222603 ACCAGGAATGAGTGGTTTTGTC 58.777 45.455 0.00 0.00 45.17 3.18
3103 3274 2.226437 CCAGGAATGAGTGGTTTTGTCG 59.774 50.000 0.00 0.00 0.00 4.35
3104 3275 2.878406 CAGGAATGAGTGGTTTTGTCGT 59.122 45.455 0.00 0.00 0.00 4.34
3105 3276 4.062293 CAGGAATGAGTGGTTTTGTCGTA 58.938 43.478 0.00 0.00 0.00 3.43
3106 3277 4.152402 CAGGAATGAGTGGTTTTGTCGTAG 59.848 45.833 0.00 0.00 0.00 3.51
3107 3278 4.039973 AGGAATGAGTGGTTTTGTCGTAGA 59.960 41.667 0.00 0.00 0.00 2.59
3108 3279 4.753107 GGAATGAGTGGTTTTGTCGTAGAA 59.247 41.667 0.00 0.00 39.69 2.10
3109 3280 5.411669 GGAATGAGTGGTTTTGTCGTAGAAT 59.588 40.000 0.00 0.00 39.69 2.40
3110 3281 6.072673 GGAATGAGTGGTTTTGTCGTAGAATT 60.073 38.462 0.00 0.00 39.69 2.17
3111 3282 7.118680 GGAATGAGTGGTTTTGTCGTAGAATTA 59.881 37.037 0.00 0.00 39.69 1.40
3112 3283 7.596749 ATGAGTGGTTTTGTCGTAGAATTAG 57.403 36.000 0.00 0.00 39.69 1.73
3113 3284 6.518493 TGAGTGGTTTTGTCGTAGAATTAGT 58.482 36.000 0.00 0.00 39.69 2.24
3114 3285 7.660112 TGAGTGGTTTTGTCGTAGAATTAGTA 58.340 34.615 0.00 0.00 39.69 1.82
3115 3286 7.811236 TGAGTGGTTTTGTCGTAGAATTAGTAG 59.189 37.037 0.00 0.00 39.69 2.57
3116 3287 7.664758 AGTGGTTTTGTCGTAGAATTAGTAGT 58.335 34.615 0.00 0.00 39.69 2.73
3117 3288 8.796475 AGTGGTTTTGTCGTAGAATTAGTAGTA 58.204 33.333 0.00 0.00 39.69 1.82
3118 3289 9.578439 GTGGTTTTGTCGTAGAATTAGTAGTAT 57.422 33.333 0.00 0.00 39.69 2.12
3158 3329 8.637986 ACTAGTTCAAAATTTCTGTTAATGCCA 58.362 29.630 0.00 0.00 0.00 4.92
3159 3330 9.474920 CTAGTTCAAAATTTCTGTTAATGCCAA 57.525 29.630 0.00 0.00 0.00 4.52
3160 3331 8.729805 AGTTCAAAATTTCTGTTAATGCCAAA 57.270 26.923 0.00 0.00 0.00 3.28
3161 3332 9.171877 AGTTCAAAATTTCTGTTAATGCCAAAA 57.828 25.926 0.00 0.00 0.00 2.44
3162 3333 9.780413 GTTCAAAATTTCTGTTAATGCCAAAAA 57.220 25.926 0.00 0.00 0.00 1.94
3163 3334 9.780413 TTCAAAATTTCTGTTAATGCCAAAAAC 57.220 25.926 0.00 0.00 0.00 2.43
3164 3335 8.950210 TCAAAATTTCTGTTAATGCCAAAAACA 58.050 25.926 0.00 0.00 0.00 2.83
3165 3336 9.008289 CAAAATTTCTGTTAATGCCAAAAACAC 57.992 29.630 0.00 0.00 0.00 3.32
3166 3337 8.504812 AAATTTCTGTTAATGCCAAAAACACT 57.495 26.923 0.00 0.00 0.00 3.55
3167 3338 9.606631 AAATTTCTGTTAATGCCAAAAACACTA 57.393 25.926 0.00 0.00 0.00 2.74
3168 3339 9.606631 AATTTCTGTTAATGCCAAAAACACTAA 57.393 25.926 0.00 0.00 0.00 2.24
3169 3340 9.777297 ATTTCTGTTAATGCCAAAAACACTAAT 57.223 25.926 0.00 0.00 0.00 1.73
3170 3341 9.606631 TTTCTGTTAATGCCAAAAACACTAATT 57.393 25.926 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.071747 GGGTGGGTTTAGAGGAGATGATC 59.928 52.174 0.00 0.00 0.00 2.92
2 3 3.049344 GGGTGGGTTTAGAGGAGATGAT 58.951 50.000 0.00 0.00 0.00 2.45
4 5 1.490910 GGGGTGGGTTTAGAGGAGATG 59.509 57.143 0.00 0.00 0.00 2.90
6 7 0.797579 AGGGGTGGGTTTAGAGGAGA 59.202 55.000 0.00 0.00 0.00 3.71
7 8 1.205055 GAGGGGTGGGTTTAGAGGAG 58.795 60.000 0.00 0.00 0.00 3.69
8 9 0.494551 TGAGGGGTGGGTTTAGAGGA 59.505 55.000 0.00 0.00 0.00 3.71
9 10 1.368374 TTGAGGGGTGGGTTTAGAGG 58.632 55.000 0.00 0.00 0.00 3.69
10 11 3.518992 TTTTGAGGGGTGGGTTTAGAG 57.481 47.619 0.00 0.00 0.00 2.43
11 12 3.975479 TTTTTGAGGGGTGGGTTTAGA 57.025 42.857 0.00 0.00 0.00 2.10
34 35 6.893020 ATAGTGGGTGTAGAGGAGATTTTT 57.107 37.500 0.00 0.00 0.00 1.94
35 36 6.893020 AATAGTGGGTGTAGAGGAGATTTT 57.107 37.500 0.00 0.00 0.00 1.82
36 37 6.653989 CAAATAGTGGGTGTAGAGGAGATTT 58.346 40.000 0.00 0.00 0.00 2.17
37 38 5.396884 GCAAATAGTGGGTGTAGAGGAGATT 60.397 44.000 0.00 0.00 0.00 2.40
38 39 4.101741 GCAAATAGTGGGTGTAGAGGAGAT 59.898 45.833 0.00 0.00 0.00 2.75
39 40 3.451178 GCAAATAGTGGGTGTAGAGGAGA 59.549 47.826 0.00 0.00 0.00 3.71
40 41 3.452627 AGCAAATAGTGGGTGTAGAGGAG 59.547 47.826 0.00 0.00 0.00 3.69
41 42 3.197766 CAGCAAATAGTGGGTGTAGAGGA 59.802 47.826 0.00 0.00 0.00 3.71
42 43 3.055094 ACAGCAAATAGTGGGTGTAGAGG 60.055 47.826 0.00 0.00 43.26 3.69
43 44 4.184629 GACAGCAAATAGTGGGTGTAGAG 58.815 47.826 1.76 0.00 44.88 2.43
44 45 3.580895 TGACAGCAAATAGTGGGTGTAGA 59.419 43.478 1.76 0.00 44.88 2.59
45 46 3.937814 TGACAGCAAATAGTGGGTGTAG 58.062 45.455 1.76 0.00 44.88 2.74
46 47 4.225042 AGATGACAGCAAATAGTGGGTGTA 59.775 41.667 1.76 0.00 44.88 2.90
48 49 3.614092 AGATGACAGCAAATAGTGGGTG 58.386 45.455 0.00 0.00 38.42 4.61
49 50 4.471386 ACTAGATGACAGCAAATAGTGGGT 59.529 41.667 0.00 0.00 31.79 4.51
50 51 5.028549 ACTAGATGACAGCAAATAGTGGG 57.971 43.478 0.00 0.00 31.79 4.61
51 52 6.219473 CCTACTAGATGACAGCAAATAGTGG 58.781 44.000 0.00 0.00 33.76 4.00
52 53 6.219473 CCCTACTAGATGACAGCAAATAGTG 58.781 44.000 0.00 0.00 33.76 2.74
53 54 5.221541 GCCCTACTAGATGACAGCAAATAGT 60.222 44.000 0.00 0.00 35.12 2.12
54 55 5.233988 GCCCTACTAGATGACAGCAAATAG 58.766 45.833 0.00 0.00 0.00 1.73
55 56 4.040461 GGCCCTACTAGATGACAGCAAATA 59.960 45.833 0.00 0.00 0.00 1.40
56 57 3.181450 GGCCCTACTAGATGACAGCAAAT 60.181 47.826 0.00 0.00 0.00 2.32
57 58 2.170607 GGCCCTACTAGATGACAGCAAA 59.829 50.000 0.00 0.00 0.00 3.68
58 59 1.762957 GGCCCTACTAGATGACAGCAA 59.237 52.381 0.00 0.00 0.00 3.91
59 60 1.062886 AGGCCCTACTAGATGACAGCA 60.063 52.381 0.00 0.00 0.00 4.41
60 61 1.342819 CAGGCCCTACTAGATGACAGC 59.657 57.143 0.00 0.00 0.00 4.40
61 62 2.950781 TCAGGCCCTACTAGATGACAG 58.049 52.381 0.00 0.00 0.00 3.51
62 63 3.398318 TTCAGGCCCTACTAGATGACA 57.602 47.619 0.00 0.00 0.00 3.58
63 64 4.162509 AGTTTTCAGGCCCTACTAGATGAC 59.837 45.833 0.00 0.00 0.00 3.06
64 65 4.162320 CAGTTTTCAGGCCCTACTAGATGA 59.838 45.833 0.00 0.00 0.00 2.92
65 66 4.162320 TCAGTTTTCAGGCCCTACTAGATG 59.838 45.833 0.00 0.00 0.00 2.90
66 67 4.362677 TCAGTTTTCAGGCCCTACTAGAT 58.637 43.478 0.00 0.00 0.00 1.98
67 68 3.786553 TCAGTTTTCAGGCCCTACTAGA 58.213 45.455 0.00 0.00 0.00 2.43
68 69 4.553330 TTCAGTTTTCAGGCCCTACTAG 57.447 45.455 0.00 0.00 0.00 2.57
69 70 4.986054 TTTCAGTTTTCAGGCCCTACTA 57.014 40.909 0.00 0.00 0.00 1.82
70 71 3.876309 TTTCAGTTTTCAGGCCCTACT 57.124 42.857 0.00 0.00 0.00 2.57
71 72 3.889538 ACTTTTCAGTTTTCAGGCCCTAC 59.110 43.478 0.00 0.00 0.00 3.18
72 73 4.142038 GACTTTTCAGTTTTCAGGCCCTA 58.858 43.478 0.00 0.00 31.22 3.53
73 74 2.959030 GACTTTTCAGTTTTCAGGCCCT 59.041 45.455 0.00 0.00 31.22 5.19
74 75 2.035961 GGACTTTTCAGTTTTCAGGCCC 59.964 50.000 0.00 0.00 31.22 5.80
75 76 2.693074 TGGACTTTTCAGTTTTCAGGCC 59.307 45.455 0.00 0.00 31.22 5.19
76 77 4.385358 TTGGACTTTTCAGTTTTCAGGC 57.615 40.909 0.00 0.00 31.22 4.85
77 78 6.636850 CGTAATTGGACTTTTCAGTTTTCAGG 59.363 38.462 0.00 0.00 31.22 3.86
78 79 7.193595 ACGTAATTGGACTTTTCAGTTTTCAG 58.806 34.615 0.00 0.00 31.22 3.02
79 80 7.090953 ACGTAATTGGACTTTTCAGTTTTCA 57.909 32.000 0.00 0.00 31.22 2.69
80 81 7.319615 CGTACGTAATTGGACTTTTCAGTTTTC 59.680 37.037 7.22 0.00 31.22 2.29
81 82 7.127686 CGTACGTAATTGGACTTTTCAGTTTT 58.872 34.615 7.22 0.00 31.22 2.43
82 83 6.293027 CCGTACGTAATTGGACTTTTCAGTTT 60.293 38.462 15.21 0.00 31.22 2.66
83 84 5.178067 CCGTACGTAATTGGACTTTTCAGTT 59.822 40.000 15.21 0.00 31.22 3.16
84 85 4.687483 CCGTACGTAATTGGACTTTTCAGT 59.313 41.667 15.21 0.00 35.17 3.41
85 86 4.687483 ACCGTACGTAATTGGACTTTTCAG 59.313 41.667 15.21 0.00 0.00 3.02
86 87 4.630111 ACCGTACGTAATTGGACTTTTCA 58.370 39.130 15.21 0.00 0.00 2.69
87 88 6.092748 TCTACCGTACGTAATTGGACTTTTC 58.907 40.000 15.21 0.00 0.00 2.29
88 89 6.024552 TCTACCGTACGTAATTGGACTTTT 57.975 37.500 15.21 0.00 0.00 2.27
89 90 5.643379 TCTACCGTACGTAATTGGACTTT 57.357 39.130 15.21 0.00 0.00 2.66
90 91 5.415701 TCTTCTACCGTACGTAATTGGACTT 59.584 40.000 15.21 0.00 0.00 3.01
91 92 4.943705 TCTTCTACCGTACGTAATTGGACT 59.056 41.667 15.21 0.00 0.00 3.85
92 93 5.235305 TCTTCTACCGTACGTAATTGGAC 57.765 43.478 15.21 0.00 0.00 4.02
93 94 5.589855 TCATCTTCTACCGTACGTAATTGGA 59.410 40.000 15.21 6.13 0.00 3.53
94 95 5.684626 GTCATCTTCTACCGTACGTAATTGG 59.315 44.000 15.21 2.29 0.00 3.16
95 96 6.195983 GTGTCATCTTCTACCGTACGTAATTG 59.804 42.308 15.21 0.29 0.00 2.32
96 97 6.261118 GTGTCATCTTCTACCGTACGTAATT 58.739 40.000 15.21 0.00 0.00 1.40
97 98 5.503031 CGTGTCATCTTCTACCGTACGTAAT 60.503 44.000 15.21 1.72 0.00 1.89
98 99 4.201714 CGTGTCATCTTCTACCGTACGTAA 60.202 45.833 15.21 0.24 0.00 3.18
99 100 3.306973 CGTGTCATCTTCTACCGTACGTA 59.693 47.826 15.21 6.01 0.00 3.57
100 101 2.094894 CGTGTCATCTTCTACCGTACGT 59.905 50.000 15.21 5.08 0.00 3.57
101 102 2.349580 TCGTGTCATCTTCTACCGTACG 59.650 50.000 8.69 8.69 0.00 3.67
102 103 4.548991 ATCGTGTCATCTTCTACCGTAC 57.451 45.455 0.00 0.00 0.00 3.67
103 104 5.604565 TCTATCGTGTCATCTTCTACCGTA 58.395 41.667 0.00 0.00 0.00 4.02
104 105 4.449131 TCTATCGTGTCATCTTCTACCGT 58.551 43.478 0.00 0.00 0.00 4.83
105 106 5.386447 CATCTATCGTGTCATCTTCTACCG 58.614 45.833 0.00 0.00 0.00 4.02
106 107 5.048364 AGCATCTATCGTGTCATCTTCTACC 60.048 44.000 0.00 0.00 0.00 3.18
107 108 6.007936 AGCATCTATCGTGTCATCTTCTAC 57.992 41.667 0.00 0.00 0.00 2.59
108 109 6.641169 AAGCATCTATCGTGTCATCTTCTA 57.359 37.500 0.00 0.00 0.00 2.10
109 110 5.528043 AAGCATCTATCGTGTCATCTTCT 57.472 39.130 0.00 0.00 0.00 2.85
110 111 6.595772 AAAAGCATCTATCGTGTCATCTTC 57.404 37.500 0.00 0.00 0.00 2.87
111 112 6.820656 AGAAAAAGCATCTATCGTGTCATCTT 59.179 34.615 0.00 0.00 0.00 2.40
112 113 6.344500 AGAAAAAGCATCTATCGTGTCATCT 58.656 36.000 0.00 0.00 0.00 2.90
113 114 6.595772 AGAAAAAGCATCTATCGTGTCATC 57.404 37.500 0.00 0.00 0.00 2.92
114 115 6.992063 AAGAAAAAGCATCTATCGTGTCAT 57.008 33.333 0.00 0.00 0.00 3.06
115 116 7.602644 ACTTAAGAAAAAGCATCTATCGTGTCA 59.397 33.333 10.09 0.00 0.00 3.58
116 117 7.900352 CACTTAAGAAAAAGCATCTATCGTGTC 59.100 37.037 10.09 0.00 0.00 3.67
117 118 7.624344 GCACTTAAGAAAAAGCATCTATCGTGT 60.624 37.037 10.09 0.00 0.00 4.49
118 119 6.684555 GCACTTAAGAAAAAGCATCTATCGTG 59.315 38.462 10.09 0.00 0.00 4.35
119 120 6.595716 AGCACTTAAGAAAAAGCATCTATCGT 59.404 34.615 10.09 0.00 0.00 3.73
120 121 6.904011 CAGCACTTAAGAAAAAGCATCTATCG 59.096 38.462 10.09 0.00 0.00 2.92
121 122 7.695618 CACAGCACTTAAGAAAAAGCATCTATC 59.304 37.037 10.09 0.00 0.00 2.08
122 123 7.391554 TCACAGCACTTAAGAAAAAGCATCTAT 59.608 33.333 10.09 0.00 0.00 1.98
123 124 6.710295 TCACAGCACTTAAGAAAAAGCATCTA 59.290 34.615 10.09 0.00 0.00 1.98
124 125 5.532406 TCACAGCACTTAAGAAAAAGCATCT 59.468 36.000 10.09 0.00 0.00 2.90
125 126 5.762045 TCACAGCACTTAAGAAAAAGCATC 58.238 37.500 10.09 0.00 0.00 3.91
126 127 5.766222 CTCACAGCACTTAAGAAAAAGCAT 58.234 37.500 10.09 0.00 0.00 3.79
127 128 4.498009 GCTCACAGCACTTAAGAAAAAGCA 60.498 41.667 10.09 0.00 41.89 3.91
128 129 3.977579 GCTCACAGCACTTAAGAAAAAGC 59.022 43.478 10.09 5.15 41.89 3.51
129 130 4.540824 GGCTCACAGCACTTAAGAAAAAG 58.459 43.478 10.09 0.00 44.75 2.27
130 131 3.317993 GGGCTCACAGCACTTAAGAAAAA 59.682 43.478 10.09 0.00 42.59 1.94
131 132 2.884639 GGGCTCACAGCACTTAAGAAAA 59.115 45.455 10.09 0.00 42.59 2.29
132 133 2.504367 GGGCTCACAGCACTTAAGAAA 58.496 47.619 10.09 0.00 42.59 2.52
133 134 2.185004 GGGCTCACAGCACTTAAGAA 57.815 50.000 10.09 0.00 42.59 2.52
134 135 3.935993 GGGCTCACAGCACTTAAGA 57.064 52.632 10.09 0.00 42.59 2.10
156 157 1.775869 TCAATCAGCGATGCGATCTC 58.224 50.000 0.00 0.00 0.00 2.75
199 200 0.935196 CTACGCGAAAATGGGTAGGC 59.065 55.000 15.93 0.00 46.11 3.93
229 233 4.212425 TGGAACAGTGCACGTTATGTTAAG 59.788 41.667 18.77 1.61 36.08 1.85
258 262 1.604604 TGGCAAAAGAAGGAAGACGG 58.395 50.000 0.00 0.00 0.00 4.79
392 400 4.181578 GTGAGTATGGCGAACAGTTGTAT 58.818 43.478 0.00 0.00 0.00 2.29
393 401 3.581755 GTGAGTATGGCGAACAGTTGTA 58.418 45.455 0.00 0.00 0.00 2.41
394 402 2.413837 GTGAGTATGGCGAACAGTTGT 58.586 47.619 0.00 0.00 0.00 3.32
396 404 1.671850 CGGTGAGTATGGCGAACAGTT 60.672 52.381 0.00 0.00 0.00 3.16
399 407 1.216977 CCGGTGAGTATGGCGAACA 59.783 57.895 0.00 0.00 0.00 3.18
400 408 0.104304 ATCCGGTGAGTATGGCGAAC 59.896 55.000 0.00 0.00 0.00 3.95
401 409 0.387929 GATCCGGTGAGTATGGCGAA 59.612 55.000 0.00 0.00 0.00 4.70
402 410 0.753848 TGATCCGGTGAGTATGGCGA 60.754 55.000 0.00 0.00 0.00 5.54
403 411 0.318441 ATGATCCGGTGAGTATGGCG 59.682 55.000 0.00 0.00 0.00 5.69
404 412 1.344438 TCATGATCCGGTGAGTATGGC 59.656 52.381 0.00 0.00 0.00 4.40
405 413 3.657634 CTTCATGATCCGGTGAGTATGG 58.342 50.000 0.00 0.00 0.00 2.74
407 415 2.700371 TGCTTCATGATCCGGTGAGTAT 59.300 45.455 0.00 0.00 0.00 2.12
408 416 2.101415 CTGCTTCATGATCCGGTGAGTA 59.899 50.000 0.00 0.00 0.00 2.59
409 417 0.904649 TGCTTCATGATCCGGTGAGT 59.095 50.000 0.00 0.00 0.00 3.41
410 418 1.579698 CTGCTTCATGATCCGGTGAG 58.420 55.000 0.00 0.00 0.00 3.51
411 419 0.462581 GCTGCTTCATGATCCGGTGA 60.463 55.000 0.00 0.00 0.00 4.02
412 420 1.442526 GGCTGCTTCATGATCCGGTG 61.443 60.000 0.00 0.00 0.00 4.94
413 421 1.153086 GGCTGCTTCATGATCCGGT 60.153 57.895 0.00 0.00 0.00 5.28
414 422 1.895707 GGGCTGCTTCATGATCCGG 60.896 63.158 0.00 0.00 0.00 5.14
415 423 2.249535 CGGGCTGCTTCATGATCCG 61.250 63.158 0.00 0.00 0.00 4.18
416 424 2.550101 GCGGGCTGCTTCATGATCC 61.550 63.158 11.99 0.00 41.73 3.36
417 425 2.550101 GGCGGGCTGCTTCATGATC 61.550 63.158 19.30 0.00 45.43 2.92
418 426 2.517875 GGCGGGCTGCTTCATGAT 60.518 61.111 19.30 0.00 45.43 2.45
419 427 3.982316 CTGGCGGGCTGCTTCATGA 62.982 63.158 19.30 0.00 45.43 3.07
435 443 2.149803 TACGTTGCGGGGTCTCACTG 62.150 60.000 0.00 0.00 0.00 3.66
439 447 1.153881 GAGTACGTTGCGGGGTCTC 60.154 63.158 0.00 0.00 0.00 3.36
440 448 2.643232 GGAGTACGTTGCGGGGTCT 61.643 63.158 0.00 0.00 0.00 3.85
489 507 0.978907 AGGAATACGAACGTTGGGGT 59.021 50.000 15.01 8.17 0.00 4.95
550 568 2.358003 AAAGCTGCTTCGCTCGCT 60.358 55.556 16.28 0.00 39.86 4.93
725 744 0.395311 CAGCTGTAGTCGGGAGGGTA 60.395 60.000 5.25 0.00 0.00 3.69
726 745 1.682684 CAGCTGTAGTCGGGAGGGT 60.683 63.158 5.25 0.00 0.00 4.34
727 746 1.682684 ACAGCTGTAGTCGGGAGGG 60.683 63.158 20.16 0.00 0.00 4.30
732 751 2.125512 GCCCACAGCTGTAGTCGG 60.126 66.667 21.20 16.37 38.99 4.79
735 754 2.973899 CTCGCCCACAGCTGTAGT 59.026 61.111 21.20 0.00 40.39 2.73
856 876 2.028043 GTGCTGCCGCTGCTTTTT 59.972 55.556 21.13 0.00 38.71 1.94
857 877 3.982241 GGTGCTGCCGCTGCTTTT 61.982 61.111 21.13 0.00 38.71 2.27
867 887 1.312815 GTATGAATGAGGGGTGCTGC 58.687 55.000 0.00 0.00 0.00 5.25
868 888 1.134401 ACGTATGAATGAGGGGTGCTG 60.134 52.381 0.00 0.00 0.00 4.41
869 889 1.139058 GACGTATGAATGAGGGGTGCT 59.861 52.381 0.00 0.00 0.00 4.40
906 927 0.757935 TAGGCATGGTACCGAGGGAC 60.758 60.000 7.57 0.00 0.00 4.46
907 928 0.757935 GTAGGCATGGTACCGAGGGA 60.758 60.000 7.57 0.00 0.00 4.20
908 929 1.746517 GTAGGCATGGTACCGAGGG 59.253 63.158 7.57 0.00 0.00 4.30
909 930 1.046472 TGGTAGGCATGGTACCGAGG 61.046 60.000 7.57 0.00 42.69 4.63
910 931 0.104304 GTGGTAGGCATGGTACCGAG 59.896 60.000 7.57 3.00 42.69 4.63
954 975 3.394940 GGGTTTTATAGAGGGAGGGAAGG 59.605 52.174 0.00 0.00 0.00 3.46
955 976 3.394940 GGGGTTTTATAGAGGGAGGGAAG 59.605 52.174 0.00 0.00 0.00 3.46
956 977 3.400419 GGGGTTTTATAGAGGGAGGGAA 58.600 50.000 0.00 0.00 0.00 3.97
957 978 2.694920 CGGGGTTTTATAGAGGGAGGGA 60.695 54.545 0.00 0.00 0.00 4.20
958 979 1.697982 CGGGGTTTTATAGAGGGAGGG 59.302 57.143 0.00 0.00 0.00 4.30
959 980 1.697982 CCGGGGTTTTATAGAGGGAGG 59.302 57.143 0.00 0.00 0.00 4.30
1050 1071 3.695606 GCTGCTCTCGGGTGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
1058 1079 3.570638 CCATTGCCGCTGCTCTCG 61.571 66.667 0.70 0.00 38.71 4.04
1464 1491 3.695606 GCCAGCCTGACGAGGTCA 61.696 66.667 0.00 0.00 42.15 4.02
1851 1878 4.338710 GCCCCCTTGCCGTACACA 62.339 66.667 0.00 0.00 0.00 3.72
2018 2045 0.901827 TACACACCATCATGTCGCCT 59.098 50.000 0.00 0.00 0.00 5.52
2019 2046 1.290203 CTACACACCATCATGTCGCC 58.710 55.000 0.00 0.00 0.00 5.54
2020 2047 2.010145 ACTACACACCATCATGTCGC 57.990 50.000 0.00 0.00 0.00 5.19
2021 2048 6.504398 ACTATAACTACACACCATCATGTCG 58.496 40.000 0.00 0.00 0.00 4.35
2101 2134 5.028549 CCTCTACAGGCACACAGATTAAT 57.971 43.478 0.00 0.00 30.98 1.40
2206 2321 0.888619 AATCTCTCAACGAGCACCGA 59.111 50.000 5.53 0.00 41.76 4.69
2207 2322 1.714794 AAATCTCTCAACGAGCACCG 58.285 50.000 0.00 0.00 45.44 4.94
2208 2323 3.585862 TGTAAATCTCTCAACGAGCACC 58.414 45.455 0.00 0.00 39.70 5.01
2209 2324 3.061429 GCTGTAAATCTCTCAACGAGCAC 59.939 47.826 0.00 0.00 39.70 4.40
2210 2325 3.254060 GCTGTAAATCTCTCAACGAGCA 58.746 45.455 0.00 0.00 39.70 4.26
2211 2326 3.254060 TGCTGTAAATCTCTCAACGAGC 58.746 45.455 0.00 0.00 39.70 5.03
2212 2327 4.738124 TCTGCTGTAAATCTCTCAACGAG 58.262 43.478 0.00 0.00 41.30 4.18
2213 2328 4.783764 TCTGCTGTAAATCTCTCAACGA 57.216 40.909 0.00 0.00 0.00 3.85
2214 2329 5.406780 AGTTTCTGCTGTAAATCTCTCAACG 59.593 40.000 0.00 0.00 0.00 4.10
2215 2330 6.400515 CGAGTTTCTGCTGTAAATCTCTCAAC 60.401 42.308 8.32 0.00 0.00 3.18
2217 2332 5.048013 TCGAGTTTCTGCTGTAAATCTCTCA 60.048 40.000 8.32 0.00 0.00 3.27
2218 2333 5.403246 TCGAGTTTCTGCTGTAAATCTCTC 58.597 41.667 8.32 0.54 0.00 3.20
2219 2334 5.392767 TCGAGTTTCTGCTGTAAATCTCT 57.607 39.130 8.32 0.00 0.00 3.10
2220 2335 4.032331 GCTCGAGTTTCTGCTGTAAATCTC 59.968 45.833 15.13 2.46 0.00 2.75
2221 2336 3.929610 GCTCGAGTTTCTGCTGTAAATCT 59.070 43.478 15.13 0.00 0.00 2.40
2222 2337 3.679980 TGCTCGAGTTTCTGCTGTAAATC 59.320 43.478 15.13 1.29 0.00 2.17
2265 2403 7.553334 TCGGTATTTTAATGAAGCAGTACTCT 58.447 34.615 0.00 0.00 0.00 3.24
2266 2404 7.042658 CCTCGGTATTTTAATGAAGCAGTACTC 60.043 40.741 0.00 0.00 0.00 2.59
2271 2409 5.123227 TCCCTCGGTATTTTAATGAAGCAG 58.877 41.667 0.00 0.00 0.00 4.24
2273 2411 5.008712 CCTTCCCTCGGTATTTTAATGAAGC 59.991 44.000 0.00 0.00 0.00 3.86
2305 2443 4.632153 ACCTGTGAGTGAACAAGACATAC 58.368 43.478 0.00 0.00 0.00 2.39
2306 2444 4.343814 TGACCTGTGAGTGAACAAGACATA 59.656 41.667 0.00 0.00 0.00 2.29
2307 2445 3.134623 TGACCTGTGAGTGAACAAGACAT 59.865 43.478 0.00 0.00 0.00 3.06
2373 2543 9.991906 ACTTTATTAAGCTGACAACAACTAGTA 57.008 29.630 0.00 0.00 34.60 1.82
2374 2544 8.904099 ACTTTATTAAGCTGACAACAACTAGT 57.096 30.769 0.00 0.00 34.60 2.57
2466 2636 4.906618 TCCAGAGTAGTAAAGCAAAAGGG 58.093 43.478 0.00 0.00 0.00 3.95
2561 2732 4.323477 TCCCCGGTTTCGTGCAGG 62.323 66.667 0.00 0.00 33.95 4.85
2562 2733 2.742372 CTCCCCGGTTTCGTGCAG 60.742 66.667 0.00 0.00 33.95 4.41
2563 2734 3.235481 TCTCCCCGGTTTCGTGCA 61.235 61.111 0.00 0.00 33.95 4.57
2564 2735 2.741211 GTCTCCCCGGTTTCGTGC 60.741 66.667 0.00 0.00 33.95 5.34
2565 2736 2.431942 CGTCTCCCCGGTTTCGTG 60.432 66.667 0.00 0.00 33.95 4.35
2566 2737 4.368543 GCGTCTCCCCGGTTTCGT 62.369 66.667 0.00 0.00 33.95 3.85
2568 2739 3.703127 AGGCGTCTCCCCGGTTTC 61.703 66.667 0.00 0.00 34.51 2.78
2569 2740 4.016706 CAGGCGTCTCCCCGGTTT 62.017 66.667 0.00 0.00 34.51 3.27
2590 2761 4.457496 ATGCAGTCCGTCCAGGCG 62.457 66.667 0.00 0.00 40.77 5.52
2591 2762 2.512515 GATGCAGTCCGTCCAGGC 60.513 66.667 0.00 0.00 40.77 4.85
2592 2763 2.202797 CGATGCAGTCCGTCCAGG 60.203 66.667 0.00 0.00 42.97 4.45
2593 2764 1.517257 GACGATGCAGTCCGTCCAG 60.517 63.158 21.16 0.00 46.54 3.86
2594 2765 2.571757 GACGATGCAGTCCGTCCA 59.428 61.111 21.16 0.00 46.54 4.02
2599 2770 1.293924 CCATGAAGACGATGCAGTCC 58.706 55.000 2.65 0.00 41.83 3.85
2609 2780 3.074412 CACCACCAAGTACCATGAAGAC 58.926 50.000 0.00 0.00 0.00 3.01
2612 2783 1.143889 TGCACCACCAAGTACCATGAA 59.856 47.619 0.00 0.00 0.00 2.57
2613 2784 0.767998 TGCACCACCAAGTACCATGA 59.232 50.000 0.00 0.00 0.00 3.07
2619 2790 2.878117 GCTAACCATGCACCACCAAGTA 60.878 50.000 0.00 0.00 0.00 2.24
2623 2794 1.673993 CGCTAACCATGCACCACCA 60.674 57.895 0.00 0.00 0.00 4.17
2662 2833 2.165301 CGTTTCTCATCGCCGGGAC 61.165 63.158 2.18 0.00 0.00 4.46
2663 2834 1.879737 TTCGTTTCTCATCGCCGGGA 61.880 55.000 2.18 0.00 0.00 5.14
2664 2835 1.017177 TTTCGTTTCTCATCGCCGGG 61.017 55.000 2.18 0.00 0.00 5.73
2666 2837 1.068474 AGTTTCGTTTCTCATCGCCG 58.932 50.000 0.00 0.00 0.00 6.46
2667 2838 1.464189 GCAGTTTCGTTTCTCATCGCC 60.464 52.381 0.00 0.00 0.00 5.54
2670 2841 3.743396 ACAGAGCAGTTTCGTTTCTCATC 59.257 43.478 0.00 0.00 0.00 2.92
2671 2842 3.496130 CACAGAGCAGTTTCGTTTCTCAT 59.504 43.478 0.00 0.00 0.00 2.90
2672 2843 2.866156 CACAGAGCAGTTTCGTTTCTCA 59.134 45.455 0.00 0.00 0.00 3.27
2673 2844 2.221981 CCACAGAGCAGTTTCGTTTCTC 59.778 50.000 0.00 0.00 0.00 2.87
2676 2847 1.308998 CCCACAGAGCAGTTTCGTTT 58.691 50.000 0.00 0.00 0.00 3.60
2677 2848 1.166531 GCCCACAGAGCAGTTTCGTT 61.167 55.000 0.00 0.00 0.00 3.85
2678 2849 1.598130 GCCCACAGAGCAGTTTCGT 60.598 57.895 0.00 0.00 0.00 3.85
2679 2850 2.671177 CGCCCACAGAGCAGTTTCG 61.671 63.158 0.00 0.00 0.00 3.46
2681 2852 1.302033 CTCGCCCACAGAGCAGTTT 60.302 57.895 0.00 0.00 0.00 2.66
2682 2853 2.044806 AACTCGCCCACAGAGCAGTT 62.045 55.000 0.00 0.00 39.23 3.16
2683 2854 2.511452 AACTCGCCCACAGAGCAGT 61.511 57.895 0.00 0.00 39.23 4.40
2684 2855 2.031516 CAACTCGCCCACAGAGCAG 61.032 63.158 0.00 0.00 39.23 4.24
2685 2856 1.830587 ATCAACTCGCCCACAGAGCA 61.831 55.000 0.00 0.00 39.23 4.26
2686 2857 1.078848 ATCAACTCGCCCACAGAGC 60.079 57.895 0.00 0.00 39.23 4.09
2687 2858 0.460987 GGATCAACTCGCCCACAGAG 60.461 60.000 0.00 0.00 41.27 3.35
2688 2859 1.191489 TGGATCAACTCGCCCACAGA 61.191 55.000 0.00 0.00 0.00 3.41
2689 2860 1.021390 GTGGATCAACTCGCCCACAG 61.021 60.000 0.00 0.00 46.13 3.66
2690 2861 1.003839 GTGGATCAACTCGCCCACA 60.004 57.895 0.00 0.00 46.13 4.17
2691 2862 2.100631 CGTGGATCAACTCGCCCAC 61.101 63.158 0.00 0.00 44.08 4.61
2692 2863 2.264480 CGTGGATCAACTCGCCCA 59.736 61.111 0.00 0.00 0.00 5.36
2693 2864 3.195698 GCGTGGATCAACTCGCCC 61.196 66.667 0.00 0.00 42.33 6.13
2696 2867 1.406219 CGACAGCGTGGATCAACTCG 61.406 60.000 0.00 0.00 0.00 4.18
2697 2868 2.363807 CGACAGCGTGGATCAACTC 58.636 57.895 0.00 0.00 0.00 3.01
2698 2869 4.578913 CGACAGCGTGGATCAACT 57.421 55.556 0.00 0.00 0.00 3.16
2708 2879 1.507713 CGATTTGTGCACGACAGCG 60.508 57.895 13.13 11.72 44.79 5.18
2709 2880 0.451135 GACGATTTGTGCACGACAGC 60.451 55.000 13.13 3.62 35.44 4.40
2710 2881 0.163788 GGACGATTTGTGCACGACAG 59.836 55.000 13.13 6.71 39.04 3.51
2711 2882 0.530870 TGGACGATTTGTGCACGACA 60.531 50.000 13.13 0.19 44.74 4.35
2712 2883 2.230892 TGGACGATTTGTGCACGAC 58.769 52.632 13.13 0.00 44.74 4.34
2713 2884 4.760757 TGGACGATTTGTGCACGA 57.239 50.000 13.13 7.71 44.74 4.35
2717 2888 1.064803 TGTTGTGTGGACGATTTGTGC 59.935 47.619 0.00 0.00 39.78 4.57
2718 2889 3.554524 GATGTTGTGTGGACGATTTGTG 58.445 45.455 0.00 0.00 0.00 3.33
2719 2890 2.223144 CGATGTTGTGTGGACGATTTGT 59.777 45.455 0.00 0.00 0.00 2.83
2720 2891 2.223144 ACGATGTTGTGTGGACGATTTG 59.777 45.455 0.00 0.00 0.00 2.32
2721 2892 2.223144 CACGATGTTGTGTGGACGATTT 59.777 45.455 0.00 0.00 35.12 2.17
2722 2893 1.798223 CACGATGTTGTGTGGACGATT 59.202 47.619 0.00 0.00 35.12 3.34
2723 2894 1.428448 CACGATGTTGTGTGGACGAT 58.572 50.000 0.00 0.00 35.12 3.73
2724 2895 1.218875 GCACGATGTTGTGTGGACGA 61.219 55.000 0.00 0.00 41.94 4.20
2725 2896 1.204062 GCACGATGTTGTGTGGACG 59.796 57.895 0.00 0.00 41.94 4.79
2726 2897 1.204062 CGCACGATGTTGTGTGGAC 59.796 57.895 6.12 0.00 44.55 4.02
2727 2898 3.636458 CGCACGATGTTGTGTGGA 58.364 55.556 6.12 0.00 44.55 4.02
2730 2901 0.721154 CTATGCGCACGATGTTGTGT 59.279 50.000 14.90 0.00 41.94 3.72
2731 2902 0.587242 GCTATGCGCACGATGTTGTG 60.587 55.000 14.90 0.00 42.81 3.33
2732 2903 1.018752 TGCTATGCGCACGATGTTGT 61.019 50.000 14.90 0.00 45.47 3.32
2733 2904 0.315625 CTGCTATGCGCACGATGTTG 60.316 55.000 14.90 0.00 45.47 3.33
2734 2905 0.740868 ACTGCTATGCGCACGATGTT 60.741 50.000 14.90 0.00 45.47 2.71
2735 2906 1.153568 ACTGCTATGCGCACGATGT 60.154 52.632 14.90 5.57 45.47 3.06
2736 2907 1.274770 CACTGCTATGCGCACGATG 59.725 57.895 14.90 4.84 45.47 3.84
2737 2908 2.528743 GCACTGCTATGCGCACGAT 61.529 57.895 14.90 0.00 45.47 3.73
2738 2909 3.188100 GCACTGCTATGCGCACGA 61.188 61.111 14.90 2.06 45.47 4.35
2744 2915 1.138337 CTCATCGAGCACTGCTATGC 58.862 55.000 2.71 4.76 46.50 3.14
2745 2916 2.789491 TCTCATCGAGCACTGCTATG 57.211 50.000 2.71 5.51 39.88 2.23
2746 2917 3.808466 TTTCTCATCGAGCACTGCTAT 57.192 42.857 2.71 0.00 39.88 2.97
2747 2918 3.056536 ACTTTTCTCATCGAGCACTGCTA 60.057 43.478 2.71 0.00 39.88 3.49
2748 2919 2.289320 ACTTTTCTCATCGAGCACTGCT 60.289 45.455 2.22 2.22 43.88 4.24
2749 2920 2.072298 ACTTTTCTCATCGAGCACTGC 58.928 47.619 0.00 0.00 0.00 4.40
2750 2921 3.367327 CAGACTTTTCTCATCGAGCACTG 59.633 47.826 0.00 0.00 0.00 3.66
2751 2922 3.583806 CAGACTTTTCTCATCGAGCACT 58.416 45.455 0.00 0.00 0.00 4.40
2752 2923 2.093467 GCAGACTTTTCTCATCGAGCAC 59.907 50.000 0.00 0.00 0.00 4.40
2753 2924 2.341257 GCAGACTTTTCTCATCGAGCA 58.659 47.619 0.00 0.00 0.00 4.26
2754 2925 1.322936 CGCAGACTTTTCTCATCGAGC 59.677 52.381 0.00 0.00 0.00 5.03
2755 2926 1.923204 CCGCAGACTTTTCTCATCGAG 59.077 52.381 0.00 0.00 0.00 4.04
2756 2927 1.404181 CCCGCAGACTTTTCTCATCGA 60.404 52.381 0.00 0.00 0.00 3.59
2773 2944 0.887247 TGCATTTCATTGTGACCCCG 59.113 50.000 0.00 0.00 0.00 5.73
2776 2947 6.532657 CCTTATTTCTGCATTTCATTGTGACC 59.467 38.462 0.00 0.00 0.00 4.02
2783 2954 6.764560 GCATTTCCCTTATTTCTGCATTTCAT 59.235 34.615 0.00 0.00 0.00 2.57
2808 2979 6.294564 CCTCAATTTCCAATCAGCATCCTATG 60.295 42.308 0.00 0.00 0.00 2.23
2809 2980 5.773680 CCTCAATTTCCAATCAGCATCCTAT 59.226 40.000 0.00 0.00 0.00 2.57
2810 2981 5.135383 CCTCAATTTCCAATCAGCATCCTA 58.865 41.667 0.00 0.00 0.00 2.94
2811 2982 3.958798 CCTCAATTTCCAATCAGCATCCT 59.041 43.478 0.00 0.00 0.00 3.24
2812 2983 3.492137 GCCTCAATTTCCAATCAGCATCC 60.492 47.826 0.00 0.00 0.00 3.51
2813 2984 3.714391 GCCTCAATTTCCAATCAGCATC 58.286 45.455 0.00 0.00 0.00 3.91
2814 2985 2.100252 CGCCTCAATTTCCAATCAGCAT 59.900 45.455 0.00 0.00 0.00 3.79
2815 2986 1.473677 CGCCTCAATTTCCAATCAGCA 59.526 47.619 0.00 0.00 0.00 4.41
2822 2993 2.505650 TGGAATCGCCTCAATTTCCA 57.494 45.000 0.00 0.00 43.98 3.53
2823 2994 3.193479 ACTTTGGAATCGCCTCAATTTCC 59.807 43.478 0.00 0.00 38.48 3.13
2855 3026 8.821894 GGTTTGTGTGCAAATTATCTGTAAAAA 58.178 29.630 0.00 0.00 45.11 1.94
2856 3027 7.168302 CGGTTTGTGTGCAAATTATCTGTAAAA 59.832 33.333 0.00 0.00 45.11 1.52
2866 3037 1.754226 AGGTCGGTTTGTGTGCAAATT 59.246 42.857 0.00 0.00 45.11 1.82
2870 3041 1.588674 CTAAGGTCGGTTTGTGTGCA 58.411 50.000 0.00 0.00 0.00 4.57
2871 3042 0.237498 GCTAAGGTCGGTTTGTGTGC 59.763 55.000 0.00 0.00 0.00 4.57
2872 3043 1.798813 GAGCTAAGGTCGGTTTGTGTG 59.201 52.381 0.00 0.00 0.00 3.82
2919 3090 6.040166 CAGCAACCTAAGGATTTATCTGCAAT 59.960 38.462 0.00 0.00 0.00 3.56
2940 3111 2.435938 GCCGGATTCGAACCAGCA 60.436 61.111 5.05 0.00 39.00 4.41
2972 3143 7.609760 AACAAGACGCATTCTATAATGAACA 57.390 32.000 5.09 0.00 44.50 3.18
2975 3146 9.764363 AGATAAACAAGACGCATTCTATAATGA 57.236 29.630 5.09 0.00 44.50 2.57
2977 3148 8.916654 CGAGATAAACAAGACGCATTCTATAAT 58.083 33.333 0.00 0.00 32.51 1.28
2978 3149 8.132995 TCGAGATAAACAAGACGCATTCTATAA 58.867 33.333 0.00 0.00 32.51 0.98
2979 3150 7.645402 TCGAGATAAACAAGACGCATTCTATA 58.355 34.615 0.00 0.00 32.51 1.31
2980 3151 6.504398 TCGAGATAAACAAGACGCATTCTAT 58.496 36.000 0.00 0.00 32.51 1.98
2981 3152 5.886992 TCGAGATAAACAAGACGCATTCTA 58.113 37.500 0.00 0.00 32.51 2.10
2982 3153 4.744570 TCGAGATAAACAAGACGCATTCT 58.255 39.130 0.00 0.00 35.32 2.40
2983 3154 5.288712 TCTTCGAGATAAACAAGACGCATTC 59.711 40.000 0.00 0.00 0.00 2.67
2984 3155 5.168569 TCTTCGAGATAAACAAGACGCATT 58.831 37.500 0.00 0.00 0.00 3.56
2985 3156 4.744570 TCTTCGAGATAAACAAGACGCAT 58.255 39.130 0.00 0.00 0.00 4.73
2986 3157 4.168922 TCTTCGAGATAAACAAGACGCA 57.831 40.909 0.00 0.00 0.00 5.24
2987 3158 4.621886 AGTTCTTCGAGATAAACAAGACGC 59.378 41.667 0.00 0.00 0.00 5.19
2988 3159 5.061064 CCAGTTCTTCGAGATAAACAAGACG 59.939 44.000 0.00 0.00 0.00 4.18
2989 3160 5.348997 CCCAGTTCTTCGAGATAAACAAGAC 59.651 44.000 0.00 0.00 0.00 3.01
2990 3161 5.479306 CCCAGTTCTTCGAGATAAACAAGA 58.521 41.667 0.00 0.00 0.00 3.02
2991 3162 4.631813 CCCCAGTTCTTCGAGATAAACAAG 59.368 45.833 0.00 0.00 0.00 3.16
2992 3163 4.564821 CCCCCAGTTCTTCGAGATAAACAA 60.565 45.833 0.00 0.00 0.00 2.83
2993 3164 3.055385 CCCCCAGTTCTTCGAGATAAACA 60.055 47.826 0.00 0.00 0.00 2.83
2994 3165 3.197116 TCCCCCAGTTCTTCGAGATAAAC 59.803 47.826 0.00 0.00 0.00 2.01
2995 3166 3.446968 TCCCCCAGTTCTTCGAGATAAA 58.553 45.455 0.00 0.00 0.00 1.40
2996 3167 3.110293 TCCCCCAGTTCTTCGAGATAA 57.890 47.619 0.00 0.00 0.00 1.75
2997 3168 2.840640 TCCCCCAGTTCTTCGAGATA 57.159 50.000 0.00 0.00 0.00 1.98
2998 3169 1.952621 TTCCCCCAGTTCTTCGAGAT 58.047 50.000 0.00 0.00 0.00 2.75
2999 3170 1.952621 ATTCCCCCAGTTCTTCGAGA 58.047 50.000 0.00 0.00 0.00 4.04
3000 3171 3.643792 AGATATTCCCCCAGTTCTTCGAG 59.356 47.826 0.00 0.00 0.00 4.04
3001 3172 3.654273 AGATATTCCCCCAGTTCTTCGA 58.346 45.455 0.00 0.00 0.00 3.71
3002 3173 5.337652 GGATAGATATTCCCCCAGTTCTTCG 60.338 48.000 0.00 0.00 0.00 3.79
3003 3174 5.045505 GGGATAGATATTCCCCCAGTTCTTC 60.046 48.000 0.00 0.00 37.73 2.87
3004 3175 4.852697 GGGATAGATATTCCCCCAGTTCTT 59.147 45.833 0.00 0.00 37.73 2.52
3005 3176 4.140204 TGGGATAGATATTCCCCCAGTTCT 60.140 45.833 8.26 0.00 41.78 3.01
3006 3177 4.175962 TGGGATAGATATTCCCCCAGTTC 58.824 47.826 8.26 0.00 41.78 3.01
3007 3178 4.243125 TGGGATAGATATTCCCCCAGTT 57.757 45.455 8.26 0.00 41.78 3.16
3008 3179 3.963525 TGGGATAGATATTCCCCCAGT 57.036 47.619 8.26 0.00 41.78 4.00
3009 3180 4.629694 GCATTGGGATAGATATTCCCCCAG 60.630 50.000 8.26 0.46 46.60 4.45
3010 3181 3.269381 GCATTGGGATAGATATTCCCCCA 59.731 47.826 8.26 5.49 44.69 4.96
3011 3182 3.373110 GGCATTGGGATAGATATTCCCCC 60.373 52.174 8.26 3.17 42.91 5.40
3012 3183 3.529319 AGGCATTGGGATAGATATTCCCC 59.471 47.826 8.26 0.00 42.91 4.81
3013 3184 4.870021 AGGCATTGGGATAGATATTCCC 57.130 45.455 4.21 4.21 43.82 3.97
3014 3185 8.829373 AAATTAGGCATTGGGATAGATATTCC 57.171 34.615 0.00 0.00 31.55 3.01
3041 3212 9.906660 CCATTGAAAAGCTACTAAACATGTAAA 57.093 29.630 0.00 0.00 0.00 2.01
3042 3213 8.026607 GCCATTGAAAAGCTACTAAACATGTAA 58.973 33.333 0.00 0.00 0.00 2.41
3043 3214 7.393234 AGCCATTGAAAAGCTACTAAACATGTA 59.607 33.333 0.00 0.00 34.38 2.29
3044 3215 6.209391 AGCCATTGAAAAGCTACTAAACATGT 59.791 34.615 0.00 0.00 34.38 3.21
3045 3216 6.624423 AGCCATTGAAAAGCTACTAAACATG 58.376 36.000 0.00 0.00 34.38 3.21
3046 3217 6.840780 AGCCATTGAAAAGCTACTAAACAT 57.159 33.333 0.00 0.00 34.38 2.71
3047 3218 6.490040 AGAAGCCATTGAAAAGCTACTAAACA 59.510 34.615 0.00 0.00 35.30 2.83
3048 3219 6.914259 AGAAGCCATTGAAAAGCTACTAAAC 58.086 36.000 0.00 0.00 35.30 2.01
3049 3220 6.942576 AGAGAAGCCATTGAAAAGCTACTAAA 59.057 34.615 0.00 0.00 35.30 1.85
3050 3221 6.476378 AGAGAAGCCATTGAAAAGCTACTAA 58.524 36.000 0.00 0.00 35.30 2.24
3051 3222 6.054860 AGAGAAGCCATTGAAAAGCTACTA 57.945 37.500 0.00 0.00 35.30 1.82
3052 3223 4.916183 AGAGAAGCCATTGAAAAGCTACT 58.084 39.130 0.00 0.00 35.30 2.57
3053 3224 5.397326 CAAGAGAAGCCATTGAAAAGCTAC 58.603 41.667 0.00 0.00 35.30 3.58
3054 3225 4.082571 GCAAGAGAAGCCATTGAAAAGCTA 60.083 41.667 0.00 0.00 35.30 3.32
3055 3226 3.305881 GCAAGAGAAGCCATTGAAAAGCT 60.306 43.478 0.00 0.00 38.88 3.74
3056 3227 2.991866 GCAAGAGAAGCCATTGAAAAGC 59.008 45.455 0.00 0.00 0.00 3.51
3067 3238 1.279271 TCCTGGTAAGGCAAGAGAAGC 59.721 52.381 0.00 0.00 44.11 3.86
3068 3239 3.703001 TTCCTGGTAAGGCAAGAGAAG 57.297 47.619 0.00 0.00 44.11 2.85
3069 3240 3.587061 TCATTCCTGGTAAGGCAAGAGAA 59.413 43.478 0.00 0.00 44.11 2.87
3070 3241 3.181329 TCATTCCTGGTAAGGCAAGAGA 58.819 45.455 0.00 0.00 44.11 3.10
3071 3242 3.054802 ACTCATTCCTGGTAAGGCAAGAG 60.055 47.826 0.00 0.00 44.11 2.85
3072 3243 2.912956 ACTCATTCCTGGTAAGGCAAGA 59.087 45.455 0.00 0.00 44.11 3.02
3073 3244 3.012518 CACTCATTCCTGGTAAGGCAAG 58.987 50.000 0.00 0.00 44.11 4.01
3074 3245 2.290896 CCACTCATTCCTGGTAAGGCAA 60.291 50.000 0.00 0.00 44.11 4.52
3075 3246 1.281867 CCACTCATTCCTGGTAAGGCA 59.718 52.381 0.00 0.00 44.11 4.75
3076 3247 1.282157 ACCACTCATTCCTGGTAAGGC 59.718 52.381 0.00 0.00 44.11 4.35
3077 3248 3.721087 AACCACTCATTCCTGGTAAGG 57.279 47.619 0.00 0.00 46.06 2.69
3078 3249 4.827284 ACAAAACCACTCATTCCTGGTAAG 59.173 41.667 0.00 0.00 40.06 2.34
3079 3250 4.798882 ACAAAACCACTCATTCCTGGTAA 58.201 39.130 0.00 0.00 40.06 2.85
3080 3251 4.394729 GACAAAACCACTCATTCCTGGTA 58.605 43.478 0.00 0.00 40.06 3.25
3081 3252 3.222603 GACAAAACCACTCATTCCTGGT 58.777 45.455 0.00 0.00 42.97 4.00
3082 3253 2.226437 CGACAAAACCACTCATTCCTGG 59.774 50.000 0.00 0.00 0.00 4.45
3083 3254 2.878406 ACGACAAAACCACTCATTCCTG 59.122 45.455 0.00 0.00 0.00 3.86
3084 3255 3.208747 ACGACAAAACCACTCATTCCT 57.791 42.857 0.00 0.00 0.00 3.36
3085 3256 4.312443 TCTACGACAAAACCACTCATTCC 58.688 43.478 0.00 0.00 0.00 3.01
3086 3257 5.917541 TTCTACGACAAAACCACTCATTC 57.082 39.130 0.00 0.00 0.00 2.67
3087 3258 6.877611 AATTCTACGACAAAACCACTCATT 57.122 33.333 0.00 0.00 0.00 2.57
3088 3259 7.159372 ACTAATTCTACGACAAAACCACTCAT 58.841 34.615 0.00 0.00 0.00 2.90
3089 3260 6.518493 ACTAATTCTACGACAAAACCACTCA 58.482 36.000 0.00 0.00 0.00 3.41
3090 3261 7.811713 ACTACTAATTCTACGACAAAACCACTC 59.188 37.037 0.00 0.00 0.00 3.51
3091 3262 7.664758 ACTACTAATTCTACGACAAAACCACT 58.335 34.615 0.00 0.00 0.00 4.00
3092 3263 7.880059 ACTACTAATTCTACGACAAAACCAC 57.120 36.000 0.00 0.00 0.00 4.16
3132 3303 8.637986 TGGCATTAACAGAAATTTTGAACTAGT 58.362 29.630 0.00 0.00 0.00 2.57
3133 3304 9.474920 TTGGCATTAACAGAAATTTTGAACTAG 57.525 29.630 0.00 0.00 0.00 2.57
3134 3305 9.823647 TTTGGCATTAACAGAAATTTTGAACTA 57.176 25.926 0.00 0.00 0.00 2.24
3135 3306 8.729805 TTTGGCATTAACAGAAATTTTGAACT 57.270 26.923 0.00 0.00 0.00 3.01
3136 3307 9.780413 TTTTTGGCATTAACAGAAATTTTGAAC 57.220 25.926 0.00 0.00 0.00 3.18
3137 3308 9.780413 GTTTTTGGCATTAACAGAAATTTTGAA 57.220 25.926 7.20 0.00 0.00 2.69
3138 3309 8.950210 TGTTTTTGGCATTAACAGAAATTTTGA 58.050 25.926 9.92 0.00 0.00 2.69
3139 3310 9.008289 GTGTTTTTGGCATTAACAGAAATTTTG 57.992 29.630 13.23 0.00 32.89 2.44
3140 3311 8.955388 AGTGTTTTTGGCATTAACAGAAATTTT 58.045 25.926 13.23 0.00 32.89 1.82
3141 3312 8.504812 AGTGTTTTTGGCATTAACAGAAATTT 57.495 26.923 13.23 0.00 32.89 1.82
3142 3313 9.606631 TTAGTGTTTTTGGCATTAACAGAAATT 57.393 25.926 13.23 3.37 32.89 1.82
3143 3314 9.777297 ATTAGTGTTTTTGGCATTAACAGAAAT 57.223 25.926 13.23 12.42 32.89 2.17
3144 3315 9.606631 AATTAGTGTTTTTGGCATTAACAGAAA 57.393 25.926 13.23 11.14 32.89 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.