Multiple sequence alignment - TraesCS6D01G295700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G295700 chr6D 100.000 3852 0 0 1 3852 406339841 406343692 0.000000e+00 7114.0
1 TraesCS6D01G295700 chr6D 87.523 545 34 18 2149 2674 407201853 407202382 1.980000e-167 599.0
2 TraesCS6D01G295700 chr6D 86.905 420 29 13 3131 3548 407204169 407204564 7.590000e-122 448.0
3 TraesCS6D01G295700 chr6D 93.860 114 7 0 3739 3852 407206462 407206575 5.120000e-39 172.0
4 TraesCS6D01G295700 chr6D 98.765 81 1 0 1402 1482 406341161 406341241 1.120000e-30 145.0
5 TraesCS6D01G295700 chr6D 98.765 81 1 0 1321 1401 406341242 406341322 1.120000e-30 145.0
6 TraesCS6D01G295700 chr6D 84.615 91 8 2 2997 3081 407202391 407202481 6.860000e-13 86.1
7 TraesCS6D01G295700 chr6B 89.713 1361 90 20 1 1336 610814960 610816295 0.000000e+00 1692.0
8 TraesCS6D01G295700 chr6B 92.978 826 50 2 1433 2253 610816279 610817101 0.000000e+00 1197.0
9 TraesCS6D01G295700 chr6B 90.152 396 26 9 3268 3655 611345680 611346070 1.600000e-138 503.0
10 TraesCS6D01G295700 chr6B 86.842 380 25 14 2255 2615 610817134 610817507 5.990000e-108 401.0
11 TraesCS6D01G295700 chr6B 86.275 306 31 9 2694 2993 79338007 79338307 4.800000e-84 322.0
12 TraesCS6D01G295700 chr6B 89.494 257 19 4 3130 3385 610828374 610828623 6.210000e-83 318.0
13 TraesCS6D01G295700 chr6B 84.918 305 38 7 2695 2993 636577256 636576954 6.250000e-78 302.0
14 TraesCS6D01G295700 chr6B 91.667 204 11 4 2330 2533 611331244 611331441 1.050000e-70 278.0
15 TraesCS6D01G295700 chr6B 87.895 190 17 5 2114 2301 611321519 611321704 6.480000e-53 219.0
16 TraesCS6D01G295700 chr6B 88.304 171 12 4 3687 3852 611346070 611346237 8.440000e-47 198.0
17 TraesCS6D01G295700 chr6B 91.398 93 4 1 3180 3272 611345290 611345378 1.450000e-24 124.0
18 TraesCS6D01G295700 chr6B 90.000 70 6 1 3005 3073 611344813 611344882 5.300000e-14 89.8
19 TraesCS6D01G295700 chr5D 89.832 895 65 13 457 1336 435613353 435612470 0.000000e+00 1125.0
20 TraesCS6D01G295700 chr5D 86.255 793 80 12 1433 2216 435612486 435611714 0.000000e+00 833.0
21 TraesCS6D01G295700 chr5D 100.000 49 0 0 1353 1401 435612485 435612437 1.470000e-14 91.6
22 TraesCS6D01G295700 chr1D 89.162 895 70 14 457 1336 249580462 249579580 0.000000e+00 1090.0
23 TraesCS6D01G295700 chr1D 85.949 790 85 9 1435 2216 249579594 249578823 0.000000e+00 821.0
24 TraesCS6D01G295700 chr1D 100.000 48 0 0 1354 1401 249579594 249579547 5.300000e-14 89.8
25 TraesCS6D01G295700 chr6A 92.857 686 39 7 1 677 552762908 552763592 0.000000e+00 987.0
26 TraesCS6D01G295700 chr6A 86.417 854 90 16 1433 2264 552764138 552764987 0.000000e+00 911.0
27 TraesCS6D01G295700 chr6A 86.913 596 42 15 3268 3852 552826964 552827534 1.510000e-178 636.0
28 TraesCS6D01G295700 chr6A 90.741 324 19 4 2375 2697 552772398 552772711 4.600000e-114 422.0
29 TraesCS6D01G295700 chr6A 91.724 290 14 6 1049 1336 552763873 552764154 1.000000e-105 394.0
30 TraesCS6D01G295700 chr6A 87.302 252 22 3 721 962 552763590 552763841 2.930000e-71 279.0
31 TraesCS6D01G295700 chr5B 85.197 304 38 7 2695 2993 618134587 618134888 4.830000e-79 305.0
32 TraesCS6D01G295700 chr5A 85.065 308 34 10 2695 2995 117166475 117166173 1.740000e-78 303.0
33 TraesCS6D01G295700 chr4B 85.197 304 36 9 2695 2993 495250141 495250440 1.740000e-78 303.0
34 TraesCS6D01G295700 chr4A 84.967 306 36 9 2695 2993 624337430 624337732 6.250000e-78 302.0
35 TraesCS6D01G295700 chr2B 84.918 305 36 9 2695 2993 799879516 799879816 2.250000e-77 300.0
36 TraesCS6D01G295700 chr7D 84.918 305 35 9 2695 2993 221749534 221749833 8.090000e-77 298.0
37 TraesCS6D01G295700 chr1B 84.590 305 40 6 2695 2993 54117593 54117290 2.910000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G295700 chr6D 406339841 406343692 3851 False 2468.000000 7114 99.176667 1 3852 3 chr6D.!!$F1 3851
1 TraesCS6D01G295700 chr6D 407201853 407206575 4722 False 326.275000 599 88.225750 2149 3852 4 chr6D.!!$F2 1703
2 TraesCS6D01G295700 chr6B 610814960 610817507 2547 False 1096.666667 1692 89.844333 1 2615 3 chr6B.!!$F5 2614
3 TraesCS6D01G295700 chr6B 611344813 611346237 1424 False 228.700000 503 89.963500 3005 3852 4 chr6B.!!$F6 847
4 TraesCS6D01G295700 chr5D 435611714 435613353 1639 True 683.200000 1125 92.029000 457 2216 3 chr5D.!!$R1 1759
5 TraesCS6D01G295700 chr1D 249578823 249580462 1639 True 666.933333 1090 91.703667 457 2216 3 chr1D.!!$R1 1759
6 TraesCS6D01G295700 chr6A 552762908 552764987 2079 False 642.750000 987 89.575000 1 2264 4 chr6A.!!$F3 2263
7 TraesCS6D01G295700 chr6A 552826964 552827534 570 False 636.000000 636 86.913000 3268 3852 1 chr6A.!!$F2 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 327 0.107654 GGGCGTCTAGTTGCATCCTT 60.108 55.0 10.33 0.0 0.0 3.36 F
1042 1069 0.179006 GGGGAAGAGACATCCATGCC 60.179 60.0 0.00 0.0 38.8 4.40 F
1517 1550 0.666274 TTCTCTCGTGCGCGATTGTT 60.666 50.0 24.28 0.0 46.8 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 2354 0.102481 CGGTGATTCTACTCGGTGGG 59.898 60.0 0.00 0.0 0.00 4.61 R
2736 2840 0.037046 CCCCACACCGGTTGTACTAC 60.037 60.0 2.97 0.0 35.67 2.73 R
2909 3013 0.179094 AGAAAACCACAGACGCACGA 60.179 50.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 4.008330 TCGAGTTTCCAGTACTACCTCTG 58.992 47.826 0.00 0.00 0.00 3.35
234 236 1.972588 ATCCCTATCATGCCTACCCC 58.027 55.000 0.00 0.00 0.00 4.95
270 272 0.249573 CACCGTATTTCCCGCCGTAT 60.250 55.000 0.00 0.00 0.00 3.06
287 289 3.323691 CCGTATGGATATGGGTGAGTTCA 59.676 47.826 0.00 0.00 36.09 3.18
289 291 4.561530 CGTATGGATATGGGTGAGTTCAGG 60.562 50.000 0.00 0.00 0.00 3.86
293 295 1.951209 TATGGGTGAGTTCAGGAGCA 58.049 50.000 0.00 0.00 0.00 4.26
295 297 0.325933 TGGGTGAGTTCAGGAGCATG 59.674 55.000 0.00 0.00 0.00 4.06
297 299 1.555075 GGGTGAGTTCAGGAGCATGTA 59.445 52.381 0.00 0.00 0.00 2.29
302 304 4.697352 GTGAGTTCAGGAGCATGTACAAAT 59.303 41.667 0.00 0.00 0.00 2.32
308 311 4.400410 GCATGTACAAATGCGGGC 57.600 55.556 5.73 0.00 43.22 6.13
311 314 0.248054 CATGTACAAATGCGGGCGTC 60.248 55.000 0.00 0.00 0.00 5.19
312 315 0.392461 ATGTACAAATGCGGGCGTCT 60.392 50.000 0.00 0.00 0.00 4.18
314 317 0.928229 GTACAAATGCGGGCGTCTAG 59.072 55.000 0.00 0.00 0.00 2.43
318 321 1.644786 AAATGCGGGCGTCTAGTTGC 61.645 55.000 0.00 1.07 0.00 4.17
322 325 1.883084 CGGGCGTCTAGTTGCATCC 60.883 63.158 10.33 3.68 0.00 3.51
324 327 0.107654 GGGCGTCTAGTTGCATCCTT 60.108 55.000 10.33 0.00 0.00 3.36
335 338 7.119846 GTCTAGTTGCATCCTTTGTTCTAACAT 59.880 37.037 0.00 0.00 38.95 2.71
339 342 6.985188 TGCATCCTTTGTTCTAACATCTAC 57.015 37.500 0.00 0.00 38.95 2.59
349 360 5.932303 TGTTCTAACATCTACCTTTGTGCTC 59.068 40.000 0.00 0.00 33.17 4.26
412 423 1.174783 GCCGTACTTCTGAGAGGACA 58.825 55.000 0.00 0.00 0.00 4.02
419 430 2.708325 ACTTCTGAGAGGACAAGGCTTT 59.292 45.455 0.00 0.00 0.00 3.51
427 438 3.073650 AGAGGACAAGGCTTTCATGAAGT 59.926 43.478 8.41 1.75 37.69 3.01
558 569 5.348997 GTGTCATCTTAAGCTCTGTTGTACC 59.651 44.000 0.00 0.00 0.00 3.34
684 695 3.921119 TGCCATGTTCTGATGTCAAAC 57.079 42.857 0.00 0.00 0.00 2.93
698 709 9.787532 TCTGATGTCAAACTTTAAAAGAAACTG 57.212 29.630 0.00 0.00 0.00 3.16
699 710 8.406172 TGATGTCAAACTTTAAAAGAAACTGC 57.594 30.769 0.00 0.00 0.00 4.40
700 711 8.031864 TGATGTCAAACTTTAAAAGAAACTGCA 58.968 29.630 0.00 0.00 0.00 4.41
706 718 9.693157 CAAACTTTAAAAGAAACTGCAATTCTG 57.307 29.630 13.50 4.78 37.22 3.02
722 734 3.452755 TTCTGTACCTGTATGCGATGG 57.547 47.619 0.00 0.00 0.00 3.51
743 755 3.653352 GGGCCTATAACCCTCTGAATCTT 59.347 47.826 0.84 0.00 44.68 2.40
744 756 4.104897 GGGCCTATAACCCTCTGAATCTTT 59.895 45.833 0.84 0.00 44.68 2.52
801 813 4.569761 TCTGAAGAAATCGACTATCCGG 57.430 45.455 0.00 0.00 0.00 5.14
803 815 5.128205 TCTGAAGAAATCGACTATCCGGTA 58.872 41.667 0.00 0.00 0.00 4.02
859 881 2.092968 TGGATCTGCATCTAACGGCTTT 60.093 45.455 0.00 0.00 0.00 3.51
891 913 2.047465 AAGCACTGCAGCTCTCCG 60.047 61.111 15.27 0.00 45.89 4.63
928 950 3.312697 GGTCTTCCTGTGTCTGTTTGAAC 59.687 47.826 0.00 0.00 0.00 3.18
990 1013 9.699703 GTCTCTGTTTCTCTTTACTTTCTACAT 57.300 33.333 0.00 0.00 0.00 2.29
1042 1069 0.179006 GGGGAAGAGACATCCATGCC 60.179 60.000 0.00 0.00 38.80 4.40
1091 1118 1.003812 TGGTTGGCCTAAGTGCGTATT 59.996 47.619 3.32 0.00 35.27 1.89
1152 1180 4.752101 GTGTGCTACTCTGAGTGATTTTGT 59.248 41.667 20.19 0.00 0.00 2.83
1170 1198 4.559862 TTGTCTGAATTTCTCCCCTCTC 57.440 45.455 0.00 0.00 0.00 3.20
1190 1218 6.408776 CCTCTCTAGTTCTTCAGGCTAGTAGA 60.409 46.154 0.00 0.00 35.14 2.59
1200 1228 1.360911 GCTAGTAGAGCCCGACAGC 59.639 63.158 0.00 0.00 46.41 4.40
1201 1229 1.384989 GCTAGTAGAGCCCGACAGCA 61.385 60.000 0.00 0.00 46.41 4.41
1202 1230 1.323412 CTAGTAGAGCCCGACAGCAT 58.677 55.000 0.00 0.00 34.23 3.79
1205 1233 1.889829 AGTAGAGCCCGACAGCATATC 59.110 52.381 0.00 0.00 34.23 1.63
1382 1410 8.504815 TCTACATATTCTGAGATTGTAGTACGC 58.495 37.037 18.80 0.00 32.25 4.42
1383 1411 7.278461 ACATATTCTGAGATTGTAGTACGCT 57.722 36.000 0.00 0.00 0.00 5.07
1384 1412 8.392372 ACATATTCTGAGATTGTAGTACGCTA 57.608 34.615 0.00 0.00 0.00 4.26
1385 1413 9.015367 ACATATTCTGAGATTGTAGTACGCTAT 57.985 33.333 0.00 0.00 0.00 2.97
1388 1416 6.483385 TCTGAGATTGTAGTACGCTATAGC 57.517 41.667 15.09 15.09 37.78 2.97
1389 1417 6.231951 TCTGAGATTGTAGTACGCTATAGCT 58.768 40.000 21.98 11.70 39.32 3.32
1390 1418 7.384477 TCTGAGATTGTAGTACGCTATAGCTA 58.616 38.462 21.98 10.77 39.32 3.32
1391 1419 7.546316 TCTGAGATTGTAGTACGCTATAGCTAG 59.454 40.741 21.98 10.33 39.32 3.42
1392 1420 7.160049 TGAGATTGTAGTACGCTATAGCTAGT 58.840 38.462 21.98 15.43 39.32 2.57
1393 1421 7.331440 TGAGATTGTAGTACGCTATAGCTAGTC 59.669 40.741 21.98 9.88 39.32 2.59
1394 1422 5.835911 TTGTAGTACGCTATAGCTAGTCG 57.164 43.478 21.98 8.90 39.32 4.18
1395 1423 5.126396 TGTAGTACGCTATAGCTAGTCGA 57.874 43.478 21.98 4.40 39.32 4.20
1396 1424 5.159925 TGTAGTACGCTATAGCTAGTCGAG 58.840 45.833 21.98 7.50 39.32 4.04
1397 1425 4.255833 AGTACGCTATAGCTAGTCGAGT 57.744 45.455 21.98 12.75 39.32 4.18
1398 1426 4.236935 AGTACGCTATAGCTAGTCGAGTC 58.763 47.826 21.98 5.83 39.32 3.36
1399 1427 2.060284 ACGCTATAGCTAGTCGAGTCG 58.940 52.381 21.98 6.09 39.32 4.18
1400 1428 2.288091 ACGCTATAGCTAGTCGAGTCGA 60.288 50.000 21.98 12.09 39.32 4.20
1401 1429 2.343246 CGCTATAGCTAGTCGAGTCGAG 59.657 54.545 21.98 5.63 36.14 4.04
1402 1430 3.577667 GCTATAGCTAGTCGAGTCGAGA 58.422 50.000 17.12 6.18 35.65 4.04
1403 1431 3.989167 GCTATAGCTAGTCGAGTCGAGAA 59.011 47.826 17.12 6.02 35.65 2.87
1404 1432 4.628333 GCTATAGCTAGTCGAGTCGAGAAT 59.372 45.833 17.12 7.76 35.65 2.40
1405 1433 5.121142 GCTATAGCTAGTCGAGTCGAGAATT 59.879 44.000 17.12 4.81 35.65 2.17
1406 1434 3.955771 AGCTAGTCGAGTCGAGAATTC 57.044 47.619 17.12 3.50 36.23 2.17
1407 1435 3.537580 AGCTAGTCGAGTCGAGAATTCT 58.462 45.455 17.12 7.95 36.23 2.40
1408 1436 4.695396 AGCTAGTCGAGTCGAGAATTCTA 58.305 43.478 17.12 12.06 36.23 2.10
1409 1437 4.508861 AGCTAGTCGAGTCGAGAATTCTAC 59.491 45.833 17.12 3.98 36.23 2.59
1410 1438 4.270566 GCTAGTCGAGTCGAGAATTCTACA 59.729 45.833 17.12 0.00 36.23 2.74
1411 1439 5.049954 GCTAGTCGAGTCGAGAATTCTACAT 60.050 44.000 17.12 0.00 36.23 2.29
1412 1440 6.145858 GCTAGTCGAGTCGAGAATTCTACATA 59.854 42.308 17.12 0.00 36.23 2.29
1413 1441 7.148540 GCTAGTCGAGTCGAGAATTCTACATAT 60.149 40.741 17.12 0.00 36.23 1.78
1414 1442 7.499321 AGTCGAGTCGAGAATTCTACATATT 57.501 36.000 17.12 0.00 36.23 1.28
1415 1443 7.577979 AGTCGAGTCGAGAATTCTACATATTC 58.422 38.462 17.12 0.00 36.23 1.75
1416 1444 7.442969 AGTCGAGTCGAGAATTCTACATATTCT 59.557 37.037 17.12 0.19 43.23 2.40
1417 1445 8.071368 GTCGAGTCGAGAATTCTACATATTCTT 58.929 37.037 17.12 0.00 41.24 2.52
1418 1446 8.622157 TCGAGTCGAGAATTCTACATATTCTTT 58.378 33.333 12.09 0.00 41.24 2.52
1419 1447 9.239002 CGAGTCGAGAATTCTACATATTCTTTT 57.761 33.333 8.25 0.00 41.24 2.27
1514 1547 1.805945 GGTTCTCTCGTGCGCGATT 60.806 57.895 24.28 0.00 46.80 3.34
1517 1550 0.666274 TTCTCTCGTGCGCGATTGTT 60.666 50.000 24.28 0.00 46.80 2.83
1532 1565 3.524541 GATTGTTGAACCCCGTACGTAT 58.475 45.455 15.21 0.00 0.00 3.06
1801 1840 3.842923 CTCCTCACGCCGCTCCAT 61.843 66.667 0.00 0.00 0.00 3.41
1844 1883 3.332493 TTCGACCGCGTGCTCTACC 62.332 63.158 4.92 0.00 38.98 3.18
1923 1965 3.060020 GCTACTACAGCCACGGCGA 62.060 63.158 16.62 0.00 45.23 5.54
2100 2152 4.477975 CGTCGTGGCCTCGGAGAC 62.478 72.222 25.62 15.90 0.00 3.36
2253 2305 2.202756 GCTCGCCAAGGAGGTACG 60.203 66.667 0.00 0.00 40.61 3.67
2272 2359 2.179764 TACGTACGTACAGCCCACC 58.820 57.895 23.60 0.00 0.00 4.61
2309 2396 3.093717 CATGCATGCAAATCCTTCTCC 57.906 47.619 26.68 0.00 0.00 3.71
2311 2398 1.006281 TGCATGCAAATCCTTCTCCCT 59.994 47.619 20.30 0.00 0.00 4.20
2314 2401 3.055602 GCATGCAAATCCTTCTCCCTTTT 60.056 43.478 14.21 0.00 0.00 2.27
2364 2468 3.681897 GCATGAACTGACTTGATCGAGTT 59.318 43.478 16.92 0.70 33.82 3.01
2365 2469 4.201666 GCATGAACTGACTTGATCGAGTTC 60.202 45.833 16.92 10.72 41.26 3.01
2366 2470 3.914312 TGAACTGACTTGATCGAGTTCC 58.086 45.455 16.92 6.00 40.76 3.62
2367 2471 3.320826 TGAACTGACTTGATCGAGTTCCA 59.679 43.478 16.92 10.19 40.76 3.53
2368 2472 4.021104 TGAACTGACTTGATCGAGTTCCAT 60.021 41.667 16.92 4.81 40.76 3.41
2369 2473 3.854666 ACTGACTTGATCGAGTTCCATG 58.145 45.455 16.92 8.21 0.00 3.66
2370 2474 2.606725 CTGACTTGATCGAGTTCCATGC 59.393 50.000 16.92 3.89 0.00 4.06
2403 2507 3.072476 GCTGAAGCCTGTGGAGGA 58.928 61.111 0.00 0.00 42.93 3.71
2494 2598 9.892130 GGTATATGCATAAGTATCTTAAAGGCT 57.108 33.333 11.13 0.00 0.00 4.58
2518 2622 2.227388 GCTTCCATTGTCACAGGAACAG 59.773 50.000 0.00 0.00 36.55 3.16
2535 2639 7.502561 ACAGGAACAGCTTTTAGATTTGTTAGT 59.497 33.333 0.00 0.00 32.58 2.24
2536 2640 8.017946 CAGGAACAGCTTTTAGATTTGTTAGTC 58.982 37.037 0.00 0.00 32.58 2.59
2579 2683 5.232838 GGTGTTTCAGCTGCAATAATAATGC 59.767 40.000 9.47 0.00 44.08 3.56
2615 2719 4.134563 TGAGCTTGTAAGTTTTCTCCACC 58.865 43.478 0.00 0.00 0.00 4.61
2616 2720 4.134563 GAGCTTGTAAGTTTTCTCCACCA 58.865 43.478 0.00 0.00 0.00 4.17
2617 2721 3.883489 AGCTTGTAAGTTTTCTCCACCAC 59.117 43.478 0.00 0.00 0.00 4.16
2641 2745 2.868583 CAATGTGATGACCATCTCCGAC 59.131 50.000 10.87 2.31 38.60 4.79
2669 2773 1.920574 CGATGCGAGAAAGACGTTGAT 59.079 47.619 0.00 0.00 0.00 2.57
2674 2778 3.057806 TGCGAGAAAGACGTTGATAGTGA 60.058 43.478 0.00 0.00 0.00 3.41
2675 2779 4.106197 GCGAGAAAGACGTTGATAGTGAT 58.894 43.478 0.00 0.00 0.00 3.06
2676 2780 5.163693 TGCGAGAAAGACGTTGATAGTGATA 60.164 40.000 0.00 0.00 0.00 2.15
2678 2782 6.487960 CGAGAAAGACGTTGATAGTGATAGT 58.512 40.000 0.00 0.00 0.00 2.12
2679 2783 6.412362 CGAGAAAGACGTTGATAGTGATAGTG 59.588 42.308 0.00 0.00 0.00 2.74
2680 2784 6.565234 AGAAAGACGTTGATAGTGATAGTGG 58.435 40.000 0.00 0.00 0.00 4.00
2681 2785 4.308899 AGACGTTGATAGTGATAGTGGC 57.691 45.455 0.00 0.00 0.00 5.01
2682 2786 3.068307 AGACGTTGATAGTGATAGTGGCC 59.932 47.826 0.00 0.00 0.00 5.36
2683 2787 2.764010 ACGTTGATAGTGATAGTGGCCA 59.236 45.455 0.00 0.00 0.00 5.36
2694 2798 5.045286 AGTGATAGTGGCCAAAGATCTTTCT 60.045 40.000 17.91 13.47 0.00 2.52
2695 2799 5.065731 GTGATAGTGGCCAAAGATCTTTCTG 59.934 44.000 17.91 12.83 30.72 3.02
2696 2800 3.515602 AGTGGCCAAAGATCTTTCTGT 57.484 42.857 17.91 0.00 30.72 3.41
2697 2801 3.837355 AGTGGCCAAAGATCTTTCTGTT 58.163 40.909 17.91 0.00 30.72 3.16
2698 2802 4.985538 AGTGGCCAAAGATCTTTCTGTTA 58.014 39.130 17.91 1.66 30.72 2.41
2699 2803 5.385198 AGTGGCCAAAGATCTTTCTGTTAA 58.615 37.500 17.91 0.00 30.72 2.01
2700 2804 5.833131 AGTGGCCAAAGATCTTTCTGTTAAA 59.167 36.000 17.91 0.00 30.72 1.52
2701 2805 5.920840 GTGGCCAAAGATCTTTCTGTTAAAC 59.079 40.000 17.91 6.86 30.72 2.01
2702 2806 5.833131 TGGCCAAAGATCTTTCTGTTAAACT 59.167 36.000 17.91 0.00 30.72 2.66
2703 2807 6.152379 GGCCAAAGATCTTTCTGTTAAACTG 58.848 40.000 17.91 3.79 30.72 3.16
2704 2808 6.239036 GGCCAAAGATCTTTCTGTTAAACTGT 60.239 38.462 17.91 0.00 30.72 3.55
2705 2809 6.638468 GCCAAAGATCTTTCTGTTAAACTGTG 59.362 38.462 17.91 3.09 30.72 3.66
2706 2810 7.468631 GCCAAAGATCTTTCTGTTAAACTGTGA 60.469 37.037 17.91 0.00 30.72 3.58
2707 2811 8.571336 CCAAAGATCTTTCTGTTAAACTGTGAT 58.429 33.333 17.91 0.00 30.72 3.06
2708 2812 9.604626 CAAAGATCTTTCTGTTAAACTGTGATC 57.395 33.333 17.91 0.00 30.72 2.92
2709 2813 7.913674 AGATCTTTCTGTTAAACTGTGATCC 57.086 36.000 0.00 0.00 0.00 3.36
2710 2814 7.453393 AGATCTTTCTGTTAAACTGTGATCCA 58.547 34.615 0.00 0.00 0.00 3.41
2711 2815 7.939039 AGATCTTTCTGTTAAACTGTGATCCAA 59.061 33.333 0.00 0.00 0.00 3.53
2712 2816 7.873719 TCTTTCTGTTAAACTGTGATCCAAA 57.126 32.000 0.00 0.00 0.00 3.28
2713 2817 8.463930 TCTTTCTGTTAAACTGTGATCCAAAT 57.536 30.769 0.00 0.00 0.00 2.32
2714 2818 8.912988 TCTTTCTGTTAAACTGTGATCCAAATT 58.087 29.630 0.00 0.00 0.00 1.82
2715 2819 9.533253 CTTTCTGTTAAACTGTGATCCAAATTT 57.467 29.630 0.00 0.00 0.00 1.82
2716 2820 9.883142 TTTCTGTTAAACTGTGATCCAAATTTT 57.117 25.926 0.00 0.00 0.00 1.82
2719 2823 9.965824 CTGTTAAACTGTGATCCAAATTTTAGT 57.034 29.630 0.00 0.00 0.00 2.24
2723 2827 8.706322 AAACTGTGATCCAAATTTTAGTACCT 57.294 30.769 0.00 0.00 0.00 3.08
2724 2828 7.687941 ACTGTGATCCAAATTTTAGTACCTG 57.312 36.000 0.00 0.00 0.00 4.00
2725 2829 7.458397 ACTGTGATCCAAATTTTAGTACCTGA 58.542 34.615 0.00 0.00 0.00 3.86
2726 2830 7.390718 ACTGTGATCCAAATTTTAGTACCTGAC 59.609 37.037 0.00 0.00 0.00 3.51
2727 2831 7.227873 TGTGATCCAAATTTTAGTACCTGACA 58.772 34.615 0.00 0.00 0.00 3.58
2728 2832 7.390440 TGTGATCCAAATTTTAGTACCTGACAG 59.610 37.037 0.00 0.00 0.00 3.51
2729 2833 7.606456 GTGATCCAAATTTTAGTACCTGACAGA 59.394 37.037 3.32 0.00 0.00 3.41
2730 2834 8.328758 TGATCCAAATTTTAGTACCTGACAGAT 58.671 33.333 3.32 0.00 0.00 2.90
2731 2835 9.178758 GATCCAAATTTTAGTACCTGACAGATT 57.821 33.333 3.32 0.00 0.00 2.40
2733 2837 9.667107 TCCAAATTTTAGTACCTGACAGATTAG 57.333 33.333 3.32 0.00 0.00 1.73
2734 2838 9.667107 CCAAATTTTAGTACCTGACAGATTAGA 57.333 33.333 3.32 0.00 0.00 2.10
2736 2840 8.928270 AATTTTAGTACCTGACAGATTAGACG 57.072 34.615 3.32 0.00 0.00 4.18
2737 2841 7.458409 TTTTAGTACCTGACAGATTAGACGT 57.542 36.000 3.32 0.00 0.00 4.34
2738 2842 8.565896 TTTTAGTACCTGACAGATTAGACGTA 57.434 34.615 3.32 0.00 0.00 3.57
2739 2843 7.783090 TTAGTACCTGACAGATTAGACGTAG 57.217 40.000 3.32 0.00 0.00 3.51
2752 2856 3.871775 ACGTAGTACAACCGGTGTG 57.128 52.632 8.52 11.63 41.94 3.82
2753 2857 0.314935 ACGTAGTACAACCGGTGTGG 59.685 55.000 8.52 3.27 41.94 4.17
2754 2858 0.388907 CGTAGTACAACCGGTGTGGG 60.389 60.000 8.52 0.22 44.64 4.61
2755 2859 0.037046 GTAGTACAACCGGTGTGGGG 60.037 60.000 8.52 0.00 44.64 4.96
2756 2860 1.829523 TAGTACAACCGGTGTGGGGC 61.830 60.000 8.52 3.97 44.64 5.80
2757 2861 4.317444 TACAACCGGTGTGGGGCG 62.317 66.667 8.52 0.00 44.64 6.13
2765 2869 4.992511 GTGTGGGGCGTGGCGTTA 62.993 66.667 0.00 0.00 0.00 3.18
2766 2870 4.251771 TGTGGGGCGTGGCGTTAA 62.252 61.111 0.00 0.00 0.00 2.01
2767 2871 2.748647 GTGGGGCGTGGCGTTAAT 60.749 61.111 0.00 0.00 0.00 1.40
2768 2872 2.748251 TGGGGCGTGGCGTTAATG 60.748 61.111 0.00 0.00 0.00 1.90
2769 2873 4.187810 GGGGCGTGGCGTTAATGC 62.188 66.667 11.38 11.38 0.00 3.56
2778 2882 3.256105 CGTTAATGCCGGCGCGTA 61.256 61.111 23.90 10.84 38.08 4.42
2779 2883 2.322081 GTTAATGCCGGCGCGTAC 59.678 61.111 23.90 13.69 38.08 3.67
2780 2884 3.256105 TTAATGCCGGCGCGTACG 61.256 61.111 23.90 11.84 44.07 3.67
2781 2885 3.696664 TTAATGCCGGCGCGTACGA 62.697 57.895 23.90 1.41 43.93 3.43
2786 2890 4.164664 CCGGCGCGTACGAGTACA 62.165 66.667 21.65 0.00 43.93 2.90
2787 2891 2.202336 CGGCGCGTACGAGTACAA 60.202 61.111 21.65 0.00 43.93 2.41
2788 2892 2.491271 CGGCGCGTACGAGTACAAC 61.491 63.158 21.65 1.93 43.93 3.32
2789 2893 1.154150 GGCGCGTACGAGTACAACT 60.154 57.895 21.65 0.00 43.93 3.16
2790 2894 0.730494 GGCGCGTACGAGTACAACTT 60.730 55.000 21.65 0.00 43.93 2.66
2791 2895 0.361184 GCGCGTACGAGTACAACTTG 59.639 55.000 21.65 0.00 43.93 3.16
2792 2896 1.678360 CGCGTACGAGTACAACTTGT 58.322 50.000 21.65 5.34 44.61 3.16
2793 2897 2.046313 CGCGTACGAGTACAACTTGTT 58.954 47.619 21.65 0.00 39.77 2.83
2794 2898 2.468777 CGCGTACGAGTACAACTTGTTT 59.531 45.455 21.65 0.00 39.77 2.83
2795 2899 3.663564 CGCGTACGAGTACAACTTGTTTA 59.336 43.478 21.65 0.00 39.77 2.01
2796 2900 4.430320 CGCGTACGAGTACAACTTGTTTAC 60.430 45.833 21.65 0.00 39.77 2.01
2797 2901 4.676924 GCGTACGAGTACAACTTGTTTACT 59.323 41.667 21.65 0.00 39.77 2.24
2798 2902 5.173854 GCGTACGAGTACAACTTGTTTACTT 59.826 40.000 21.65 0.00 39.77 2.24
2799 2903 6.566298 CGTACGAGTACAACTTGTTTACTTG 58.434 40.000 10.44 5.31 39.77 3.16
2800 2904 6.197096 CGTACGAGTACAACTTGTTTACTTGT 59.803 38.462 10.44 16.77 39.77 3.16
2801 2905 6.579491 ACGAGTACAACTTGTTTACTTGTC 57.421 37.500 10.28 0.00 39.77 3.18
2802 2906 5.521372 ACGAGTACAACTTGTTTACTTGTCC 59.479 40.000 10.28 0.00 39.77 4.02
2803 2907 5.751990 CGAGTACAACTTGTTTACTTGTCCT 59.248 40.000 0.00 0.00 30.76 3.85
2804 2908 6.074463 CGAGTACAACTTGTTTACTTGTCCTC 60.074 42.308 0.00 0.00 31.13 3.71
2805 2909 6.053650 AGTACAACTTGTTTACTTGTCCTCC 58.946 40.000 0.00 0.00 30.76 4.30
2806 2910 4.850680 ACAACTTGTTTACTTGTCCTCCA 58.149 39.130 0.00 0.00 0.00 3.86
2807 2911 5.258051 ACAACTTGTTTACTTGTCCTCCAA 58.742 37.500 0.00 0.00 0.00 3.53
2808 2912 5.712917 ACAACTTGTTTACTTGTCCTCCAAA 59.287 36.000 0.00 0.00 31.20 3.28
2809 2913 6.209788 ACAACTTGTTTACTTGTCCTCCAAAA 59.790 34.615 0.00 0.00 31.20 2.44
2810 2914 6.844097 ACTTGTTTACTTGTCCTCCAAAAA 57.156 33.333 0.00 0.00 31.20 1.94
2811 2915 6.627243 ACTTGTTTACTTGTCCTCCAAAAAC 58.373 36.000 0.00 0.00 35.63 2.43
2812 2916 6.436218 ACTTGTTTACTTGTCCTCCAAAAACT 59.564 34.615 0.00 0.00 35.89 2.66
2813 2917 6.445357 TGTTTACTTGTCCTCCAAAAACTC 57.555 37.500 0.00 0.00 35.89 3.01
2814 2918 6.184789 TGTTTACTTGTCCTCCAAAAACTCT 58.815 36.000 0.00 0.00 35.89 3.24
2815 2919 6.661805 TGTTTACTTGTCCTCCAAAAACTCTT 59.338 34.615 0.00 0.00 35.89 2.85
2816 2920 7.830201 TGTTTACTTGTCCTCCAAAAACTCTTA 59.170 33.333 0.00 0.00 35.89 2.10
2817 2921 8.847196 GTTTACTTGTCCTCCAAAAACTCTTAT 58.153 33.333 0.00 0.00 33.73 1.73
2818 2922 6.884280 ACTTGTCCTCCAAAAACTCTTATG 57.116 37.500 0.00 0.00 31.20 1.90
2819 2923 6.365520 ACTTGTCCTCCAAAAACTCTTATGT 58.634 36.000 0.00 0.00 31.20 2.29
2820 2924 7.514721 ACTTGTCCTCCAAAAACTCTTATGTA 58.485 34.615 0.00 0.00 31.20 2.29
2821 2925 8.164070 ACTTGTCCTCCAAAAACTCTTATGTAT 58.836 33.333 0.00 0.00 31.20 2.29
2822 2926 8.934023 TTGTCCTCCAAAAACTCTTATGTATT 57.066 30.769 0.00 0.00 0.00 1.89
2823 2927 8.335532 TGTCCTCCAAAAACTCTTATGTATTG 57.664 34.615 0.00 0.00 0.00 1.90
2824 2928 7.094377 TGTCCTCCAAAAACTCTTATGTATTGC 60.094 37.037 0.00 0.00 0.00 3.56
2825 2929 6.377146 TCCTCCAAAAACTCTTATGTATTGCC 59.623 38.462 0.00 0.00 0.00 4.52
2826 2930 6.405842 CCTCCAAAAACTCTTATGTATTGCCC 60.406 42.308 0.00 0.00 0.00 5.36
2827 2931 6.252995 TCCAAAAACTCTTATGTATTGCCCT 58.747 36.000 0.00 0.00 0.00 5.19
2828 2932 6.377146 TCCAAAAACTCTTATGTATTGCCCTC 59.623 38.462 0.00 0.00 0.00 4.30
2829 2933 6.152661 CCAAAAACTCTTATGTATTGCCCTCA 59.847 38.462 0.00 0.00 0.00 3.86
2830 2934 7.147846 CCAAAAACTCTTATGTATTGCCCTCAT 60.148 37.037 0.00 0.00 0.00 2.90
2831 2935 8.902806 CAAAAACTCTTATGTATTGCCCTCATA 58.097 33.333 0.00 0.00 0.00 2.15
2832 2936 9.646522 AAAAACTCTTATGTATTGCCCTCATAT 57.353 29.630 0.00 0.00 0.00 1.78
2839 2943 9.561069 CTTATGTATTGCCCTCATATATAACCC 57.439 37.037 0.00 0.00 0.00 4.11
2840 2944 6.321821 TGTATTGCCCTCATATATAACCCC 57.678 41.667 0.00 0.00 0.00 4.95
2841 2945 5.793237 TGTATTGCCCTCATATATAACCCCA 59.207 40.000 0.00 0.00 0.00 4.96
2842 2946 6.450024 TGTATTGCCCTCATATATAACCCCAT 59.550 38.462 0.00 0.00 0.00 4.00
2843 2947 4.860802 TGCCCTCATATATAACCCCATG 57.139 45.455 0.00 0.00 0.00 3.66
2844 2948 4.183116 TGCCCTCATATATAACCCCATGT 58.817 43.478 0.00 0.00 0.00 3.21
2845 2949 4.018506 TGCCCTCATATATAACCCCATGTG 60.019 45.833 0.00 0.00 0.00 3.21
2846 2950 4.628715 GCCCTCATATATAACCCCATGTGG 60.629 50.000 0.00 0.00 33.72 4.17
2847 2951 4.526970 CCTCATATATAACCCCATGTGGC 58.473 47.826 0.00 0.00 0.00 5.01
2848 2952 4.526970 CTCATATATAACCCCATGTGGCC 58.473 47.826 0.00 0.00 0.00 5.36
2849 2953 3.054728 TCATATATAACCCCATGTGGCCG 60.055 47.826 0.00 0.00 0.00 6.13
2850 2954 0.251165 ATATAACCCCATGTGGCCGC 60.251 55.000 10.11 10.11 0.00 6.53
2851 2955 1.636769 TATAACCCCATGTGGCCGCA 61.637 55.000 23.66 23.66 0.00 5.69
2852 2956 3.802227 TATAACCCCATGTGGCCGCAC 62.802 57.143 23.94 3.06 0.00 5.34
2854 2958 4.108299 CCCCATGTGGCCGCACTA 62.108 66.667 23.94 0.00 0.00 2.74
2855 2959 2.045438 CCCATGTGGCCGCACTAA 60.045 61.111 23.94 0.00 0.00 2.24
2856 2960 1.677300 CCCATGTGGCCGCACTAAA 60.677 57.895 23.94 0.00 0.00 1.85
2857 2961 1.656818 CCCATGTGGCCGCACTAAAG 61.657 60.000 23.94 9.22 0.00 1.85
2858 2962 0.676466 CCATGTGGCCGCACTAAAGA 60.676 55.000 23.94 0.00 0.00 2.52
2859 2963 0.447801 CATGTGGCCGCACTAAAGAC 59.552 55.000 23.94 0.00 0.00 3.01
2860 2964 1.019278 ATGTGGCCGCACTAAAGACG 61.019 55.000 23.94 0.00 0.00 4.18
2861 2965 1.666872 GTGGCCGCACTAAAGACGT 60.667 57.895 12.58 0.00 0.00 4.34
2862 2966 1.666553 TGGCCGCACTAAAGACGTG 60.667 57.895 0.00 0.00 35.53 4.49
2863 2967 1.666872 GGCCGCACTAAAGACGTGT 60.667 57.895 0.00 0.00 34.91 4.49
2864 2968 1.491563 GCCGCACTAAAGACGTGTG 59.508 57.895 0.00 0.00 41.30 3.82
2865 2969 1.219522 GCCGCACTAAAGACGTGTGT 61.220 55.000 0.00 0.00 40.33 3.72
2866 2970 0.782384 CCGCACTAAAGACGTGTGTC 59.218 55.000 0.00 0.00 45.86 3.67
2876 2980 2.051256 CGTGTGTCGTCTCGTGCT 60.051 61.111 0.00 0.00 34.52 4.40
2877 2981 1.657487 CGTGTGTCGTCTCGTGCTT 60.657 57.895 0.00 0.00 34.52 3.91
2878 2982 1.597700 CGTGTGTCGTCTCGTGCTTC 61.598 60.000 0.00 0.00 34.52 3.86
2879 2983 0.317938 GTGTGTCGTCTCGTGCTTCT 60.318 55.000 0.00 0.00 0.00 2.85
2880 2984 1.069432 GTGTGTCGTCTCGTGCTTCTA 60.069 52.381 0.00 0.00 0.00 2.10
2881 2985 1.605232 TGTGTCGTCTCGTGCTTCTAA 59.395 47.619 0.00 0.00 0.00 2.10
2882 2986 2.228103 TGTGTCGTCTCGTGCTTCTAAT 59.772 45.455 0.00 0.00 0.00 1.73
2883 2987 3.437741 TGTGTCGTCTCGTGCTTCTAATA 59.562 43.478 0.00 0.00 0.00 0.98
2884 2988 3.784994 GTGTCGTCTCGTGCTTCTAATAC 59.215 47.826 0.00 0.00 0.00 1.89
2885 2989 3.688185 TGTCGTCTCGTGCTTCTAATACT 59.312 43.478 0.00 0.00 0.00 2.12
2886 2990 4.155462 TGTCGTCTCGTGCTTCTAATACTT 59.845 41.667 0.00 0.00 0.00 2.24
2887 2991 4.729564 GTCGTCTCGTGCTTCTAATACTTC 59.270 45.833 0.00 0.00 0.00 3.01
2888 2992 4.634883 TCGTCTCGTGCTTCTAATACTTCT 59.365 41.667 0.00 0.00 0.00 2.85
2889 2993 4.965158 CGTCTCGTGCTTCTAATACTTCTC 59.035 45.833 0.00 0.00 0.00 2.87
2890 2994 5.275494 GTCTCGTGCTTCTAATACTTCTCC 58.725 45.833 0.00 0.00 0.00 3.71
2891 2995 4.948004 TCTCGTGCTTCTAATACTTCTCCA 59.052 41.667 0.00 0.00 0.00 3.86
2892 2996 5.594725 TCTCGTGCTTCTAATACTTCTCCAT 59.405 40.000 0.00 0.00 0.00 3.41
2893 2997 5.833082 TCGTGCTTCTAATACTTCTCCATC 58.167 41.667 0.00 0.00 0.00 3.51
2894 2998 5.359860 TCGTGCTTCTAATACTTCTCCATCA 59.640 40.000 0.00 0.00 0.00 3.07
2895 2999 6.040955 TCGTGCTTCTAATACTTCTCCATCAT 59.959 38.462 0.00 0.00 0.00 2.45
2896 3000 7.230712 TCGTGCTTCTAATACTTCTCCATCATA 59.769 37.037 0.00 0.00 0.00 2.15
2897 3001 7.540400 CGTGCTTCTAATACTTCTCCATCATAG 59.460 40.741 0.00 0.00 0.00 2.23
2898 3002 8.364142 GTGCTTCTAATACTTCTCCATCATAGT 58.636 37.037 0.00 0.00 0.00 2.12
2899 3003 8.363390 TGCTTCTAATACTTCTCCATCATAGTG 58.637 37.037 0.00 0.00 0.00 2.74
2900 3004 8.580720 GCTTCTAATACTTCTCCATCATAGTGA 58.419 37.037 0.00 0.00 0.00 3.41
2904 3008 7.976135 AATACTTCTCCATCATAGTGATTGC 57.024 36.000 0.00 0.00 34.28 3.56
2905 3009 4.375272 ACTTCTCCATCATAGTGATTGCG 58.625 43.478 0.00 0.00 34.28 4.85
2906 3010 2.759191 TCTCCATCATAGTGATTGCGC 58.241 47.619 0.00 0.00 34.28 6.09
2907 3011 2.102925 TCTCCATCATAGTGATTGCGCA 59.897 45.455 5.66 5.66 34.28 6.09
2908 3012 3.072211 CTCCATCATAGTGATTGCGCAT 58.928 45.455 12.75 0.40 34.28 4.73
2909 3013 3.479489 TCCATCATAGTGATTGCGCATT 58.521 40.909 12.75 8.03 34.28 3.56
2910 3014 3.499537 TCCATCATAGTGATTGCGCATTC 59.500 43.478 22.15 22.15 34.28 2.67
2911 3015 3.476181 CATCATAGTGATTGCGCATTCG 58.524 45.455 23.00 11.43 34.28 3.34
2912 3016 2.549926 TCATAGTGATTGCGCATTCGT 58.450 42.857 23.00 16.58 38.14 3.85
2913 3017 2.284952 TCATAGTGATTGCGCATTCGTG 59.715 45.455 23.00 18.42 38.14 4.35
2914 3018 6.595237 ATCATAGTGATTGCGCATTCGTGC 62.595 45.833 23.00 16.54 38.22 5.34
2922 3026 2.476051 GCATTCGTGCGTCTGTGG 59.524 61.111 0.00 0.00 0.00 4.17
2923 3027 2.317609 GCATTCGTGCGTCTGTGGT 61.318 57.895 0.00 0.00 0.00 4.16
2924 3028 1.841663 GCATTCGTGCGTCTGTGGTT 61.842 55.000 0.00 0.00 0.00 3.67
2925 3029 0.586319 CATTCGTGCGTCTGTGGTTT 59.414 50.000 0.00 0.00 0.00 3.27
2926 3030 1.002900 CATTCGTGCGTCTGTGGTTTT 60.003 47.619 0.00 0.00 0.00 2.43
2927 3031 0.653636 TTCGTGCGTCTGTGGTTTTC 59.346 50.000 0.00 0.00 0.00 2.29
2928 3032 0.179094 TCGTGCGTCTGTGGTTTTCT 60.179 50.000 0.00 0.00 0.00 2.52
2929 3033 0.232303 CGTGCGTCTGTGGTTTTCTC 59.768 55.000 0.00 0.00 0.00 2.87
2930 3034 0.586802 GTGCGTCTGTGGTTTTCTCC 59.413 55.000 0.00 0.00 0.00 3.71
2931 3035 0.534203 TGCGTCTGTGGTTTTCTCCC 60.534 55.000 0.00 0.00 0.00 4.30
2932 3036 0.534203 GCGTCTGTGGTTTTCTCCCA 60.534 55.000 0.00 0.00 0.00 4.37
2951 3055 4.904253 CCACAAGGGTTTTCTCGTAAAA 57.096 40.909 0.00 0.00 0.00 1.52
2952 3056 5.251601 CCACAAGGGTTTTCTCGTAAAAA 57.748 39.130 1.06 0.00 0.00 1.94
2953 3057 5.038683 CCACAAGGGTTTTCTCGTAAAAAC 58.961 41.667 15.23 15.23 44.62 2.43
2960 3064 5.147767 GTTTTCTCGTAAAAACCGTGTCT 57.852 39.130 13.56 0.00 41.26 3.41
2961 3065 6.272698 GTTTTCTCGTAAAAACCGTGTCTA 57.727 37.500 13.56 0.00 41.26 2.59
2962 3066 5.888412 TTTCTCGTAAAAACCGTGTCTAC 57.112 39.130 0.00 0.00 0.00 2.59
2963 3067 4.836125 TCTCGTAAAAACCGTGTCTACT 57.164 40.909 0.00 0.00 0.00 2.57
2964 3068 4.539870 TCTCGTAAAAACCGTGTCTACTG 58.460 43.478 0.00 0.00 0.00 2.74
2965 3069 4.036734 TCTCGTAAAAACCGTGTCTACTGT 59.963 41.667 0.00 0.00 0.00 3.55
2966 3070 4.043750 TCGTAAAAACCGTGTCTACTGTG 58.956 43.478 0.00 0.00 0.00 3.66
2967 3071 3.798337 CGTAAAAACCGTGTCTACTGTGT 59.202 43.478 0.00 0.00 0.00 3.72
2968 3072 4.085415 CGTAAAAACCGTGTCTACTGTGTC 60.085 45.833 0.00 0.00 0.00 3.67
2969 3073 3.814005 AAAACCGTGTCTACTGTGTCT 57.186 42.857 0.00 0.00 0.00 3.41
2970 3074 3.366440 AAACCGTGTCTACTGTGTCTC 57.634 47.619 0.00 0.00 0.00 3.36
2971 3075 0.873054 ACCGTGTCTACTGTGTCTCG 59.127 55.000 0.00 0.00 0.00 4.04
2972 3076 0.873054 CCGTGTCTACTGTGTCTCGT 59.127 55.000 0.00 0.00 0.00 4.18
2973 3077 1.266175 CCGTGTCTACTGTGTCTCGTT 59.734 52.381 0.00 0.00 0.00 3.85
2974 3078 2.307929 CGTGTCTACTGTGTCTCGTTG 58.692 52.381 0.00 0.00 0.00 4.10
2975 3079 2.032290 CGTGTCTACTGTGTCTCGTTGA 60.032 50.000 0.00 0.00 0.00 3.18
2976 3080 3.365064 CGTGTCTACTGTGTCTCGTTGAT 60.365 47.826 0.00 0.00 0.00 2.57
2977 3081 4.159857 GTGTCTACTGTGTCTCGTTGATC 58.840 47.826 0.00 0.00 0.00 2.92
2978 3082 4.072839 TGTCTACTGTGTCTCGTTGATCT 58.927 43.478 0.00 0.00 0.00 2.75
2979 3083 4.154375 TGTCTACTGTGTCTCGTTGATCTC 59.846 45.833 0.00 0.00 0.00 2.75
2980 3084 2.620779 ACTGTGTCTCGTTGATCTCG 57.379 50.000 0.00 0.00 0.00 4.04
2981 3085 1.880675 ACTGTGTCTCGTTGATCTCGT 59.119 47.619 9.75 0.00 0.00 4.18
2982 3086 2.293677 ACTGTGTCTCGTTGATCTCGTT 59.706 45.455 9.75 0.00 0.00 3.85
2983 3087 3.243434 ACTGTGTCTCGTTGATCTCGTTT 60.243 43.478 9.75 0.00 0.00 3.60
2984 3088 3.713288 TGTGTCTCGTTGATCTCGTTTT 58.287 40.909 9.75 0.00 0.00 2.43
2985 3089 4.862350 TGTGTCTCGTTGATCTCGTTTTA 58.138 39.130 9.75 0.00 0.00 1.52
2986 3090 5.466819 TGTGTCTCGTTGATCTCGTTTTAT 58.533 37.500 9.75 0.00 0.00 1.40
2987 3091 5.571741 TGTGTCTCGTTGATCTCGTTTTATC 59.428 40.000 9.75 0.00 0.00 1.75
2988 3092 5.800941 GTGTCTCGTTGATCTCGTTTTATCT 59.199 40.000 9.75 0.00 0.00 1.98
2989 3093 6.965500 GTGTCTCGTTGATCTCGTTTTATCTA 59.035 38.462 9.75 0.00 0.00 1.98
2990 3094 7.484007 GTGTCTCGTTGATCTCGTTTTATCTAA 59.516 37.037 9.75 0.00 0.00 2.10
2991 3095 7.484007 TGTCTCGTTGATCTCGTTTTATCTAAC 59.516 37.037 9.75 0.00 0.00 2.34
2992 3096 7.484007 GTCTCGTTGATCTCGTTTTATCTAACA 59.516 37.037 9.75 0.00 0.00 2.41
2993 3097 7.484007 TCTCGTTGATCTCGTTTTATCTAACAC 59.516 37.037 9.75 0.00 0.00 3.32
2994 3098 7.310664 TCGTTGATCTCGTTTTATCTAACACT 58.689 34.615 9.75 0.00 0.00 3.55
2995 3099 7.811236 TCGTTGATCTCGTTTTATCTAACACTT 59.189 33.333 9.75 0.00 0.00 3.16
2996 3100 8.433126 CGTTGATCTCGTTTTATCTAACACTTT 58.567 33.333 0.00 0.00 0.00 2.66
2997 3101 9.742552 GTTGATCTCGTTTTATCTAACACTTTC 57.257 33.333 0.00 0.00 0.00 2.62
2998 3102 9.706691 TTGATCTCGTTTTATCTAACACTTTCT 57.293 29.630 0.00 0.00 0.00 2.52
3032 3136 9.034544 GCATCACATAAACTGTTTTTCTTCTTT 57.965 29.630 11.48 0.00 35.29 2.52
3042 3148 6.581166 ACTGTTTTTCTTCTTTTCGAACACAC 59.419 34.615 0.00 0.00 0.00 3.82
3044 3150 6.580791 TGTTTTTCTTCTTTTCGAACACACAG 59.419 34.615 0.00 0.00 0.00 3.66
3045 3151 5.873179 TTTCTTCTTTTCGAACACACAGT 57.127 34.783 0.00 0.00 0.00 3.55
3098 4885 7.036425 TGACTAAATCATAGGGGTAGGGTTTTT 60.036 37.037 0.00 0.00 29.99 1.94
3101 4888 4.855298 TCATAGGGGTAGGGTTTTTCAG 57.145 45.455 0.00 0.00 0.00 3.02
3107 4894 2.425247 GGGTAGGGTTTTTCAGGTTGGT 60.425 50.000 0.00 0.00 0.00 3.67
3109 4896 4.472496 GGTAGGGTTTTTCAGGTTGGTTA 58.528 43.478 0.00 0.00 0.00 2.85
3110 4897 4.894705 GGTAGGGTTTTTCAGGTTGGTTAA 59.105 41.667 0.00 0.00 0.00 2.01
3111 4898 5.221303 GGTAGGGTTTTTCAGGTTGGTTAAC 60.221 44.000 0.00 0.00 36.04 2.01
3181 4968 5.063204 TGCTAAGCATGAGTAACAGTTGTT 58.937 37.500 0.00 2.75 36.43 2.83
3182 4969 5.049474 TGCTAAGCATGAGTAACAGTTGTTG 60.049 40.000 7.73 0.00 34.95 3.33
3183 4970 3.904136 AGCATGAGTAACAGTTGTTGC 57.096 42.857 7.73 6.39 40.28 4.17
3207 4994 2.278989 GCGCGCGGTGGAAGTATA 60.279 61.111 33.06 0.00 0.00 1.47
3208 4995 1.663702 GCGCGCGGTGGAAGTATAT 60.664 57.895 33.06 0.00 0.00 0.86
3209 4996 0.387622 GCGCGCGGTGGAAGTATATA 60.388 55.000 33.06 0.00 0.00 0.86
3316 5413 2.735134 AGCACGAAAACACTACGATTCC 59.265 45.455 0.00 0.00 0.00 3.01
3338 5435 2.570181 CCCCTGTACGTGACGACC 59.430 66.667 13.70 1.37 0.00 4.79
3356 5453 2.584418 CTCGAGACAGCATGCCCG 60.584 66.667 15.66 8.79 42.53 6.13
3506 5607 4.039245 TCCATGAGCACAGTATAAGTAGGC 59.961 45.833 0.00 0.00 0.00 3.93
3628 5733 4.431524 TGCTCCCCCGGATCCCTT 62.432 66.667 0.73 0.00 0.00 3.95
3638 5743 1.600107 GGATCCCTTACACACGGCA 59.400 57.895 0.00 0.00 0.00 5.69
3665 5770 2.460275 GCCGTCGTGTGCATGCATA 61.460 57.895 25.64 19.63 0.00 3.14
3666 5771 1.976478 GCCGTCGTGTGCATGCATAA 61.976 55.000 25.64 12.98 0.00 1.90
3667 5772 0.026674 CCGTCGTGTGCATGCATAAG 59.973 55.000 25.64 23.10 0.00 1.73
3668 5773 0.587242 CGTCGTGTGCATGCATAAGC 60.587 55.000 25.64 17.01 42.57 3.09
3695 5800 2.301870 GCATTACCCATCTATCACCCGA 59.698 50.000 0.00 0.00 0.00 5.14
3696 5801 3.617531 GCATTACCCATCTATCACCCGAG 60.618 52.174 0.00 0.00 0.00 4.63
3733 5838 2.665603 GCCTCGCCAAGTTCCTCT 59.334 61.111 0.00 0.00 0.00 3.69
3734 5839 1.448717 GCCTCGCCAAGTTCCTCTC 60.449 63.158 0.00 0.00 0.00 3.20
3751 7648 0.902531 CTCCGGTTACAGTGATGGGT 59.097 55.000 0.00 0.00 0.00 4.51
3788 7689 1.448013 GTTGGCTACGCTGGTCTCC 60.448 63.158 0.00 0.00 0.00 3.71
3806 7707 1.082117 CCGCTAGCTTGTGTTACCGG 61.082 60.000 13.93 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 4.919754 GCACAACAGAATGAAGGTTGATTC 59.080 41.667 10.35 0.00 43.41 2.52
234 236 3.802948 GGTGCCCCGTATGATCTATAG 57.197 52.381 0.00 0.00 0.00 1.31
264 266 1.623811 ACTCACCCATATCCATACGGC 59.376 52.381 0.00 0.00 0.00 5.68
270 272 3.041211 CTCCTGAACTCACCCATATCCA 58.959 50.000 0.00 0.00 0.00 3.41
287 289 1.382522 CCGCATTTGTACATGCTCCT 58.617 50.000 17.06 0.00 46.43 3.69
289 291 0.248621 GCCCGCATTTGTACATGCTC 60.249 55.000 17.06 5.14 46.43 4.26
293 295 0.392461 AGACGCCCGCATTTGTACAT 60.392 50.000 0.00 0.00 0.00 2.29
295 297 0.928229 CTAGACGCCCGCATTTGTAC 59.072 55.000 0.00 0.00 0.00 2.90
297 299 0.321298 AACTAGACGCCCGCATTTGT 60.321 50.000 0.00 0.00 0.00 2.83
302 304 3.309436 ATGCAACTAGACGCCCGCA 62.309 57.895 0.00 0.00 0.00 5.69
304 307 1.883084 GGATGCAACTAGACGCCCG 60.883 63.158 0.00 0.00 0.00 6.13
307 310 2.076863 ACAAAGGATGCAACTAGACGC 58.923 47.619 0.00 0.00 0.00 5.19
308 311 3.997021 AGAACAAAGGATGCAACTAGACG 59.003 43.478 0.00 0.00 0.00 4.18
311 314 6.801539 TGTTAGAACAAAGGATGCAACTAG 57.198 37.500 0.00 0.00 35.67 2.57
312 315 7.168219 AGATGTTAGAACAAAGGATGCAACTA 58.832 34.615 0.00 0.00 43.03 2.24
314 317 6.259550 AGATGTTAGAACAAAGGATGCAAC 57.740 37.500 0.00 0.00 43.03 4.17
318 321 8.454106 CAAAGGTAGATGTTAGAACAAAGGATG 58.546 37.037 0.00 0.00 43.03 3.51
322 325 7.041098 AGCACAAAGGTAGATGTTAGAACAAAG 60.041 37.037 0.00 0.00 43.03 2.77
324 327 6.296026 AGCACAAAGGTAGATGTTAGAACAA 58.704 36.000 0.00 0.00 43.03 2.83
335 338 4.102524 TCCTGAAAAGAGCACAAAGGTAGA 59.897 41.667 0.00 0.00 0.00 2.59
339 342 3.480470 TCTCCTGAAAAGAGCACAAAGG 58.520 45.455 0.00 0.00 0.00 3.11
349 360 4.566426 ATCTGGGAACTCTCCTGAAAAG 57.434 45.455 0.00 0.00 42.05 2.27
412 423 3.550842 GCGTTGAACTTCATGAAAGCCTT 60.551 43.478 9.88 0.00 38.67 4.35
419 430 2.351641 GGCATTGCGTTGAACTTCATGA 60.352 45.455 1.91 0.00 0.00 3.07
427 438 0.521291 GCTACTGGCATTGCGTTGAA 59.479 50.000 1.91 0.00 41.35 2.69
558 569 1.805254 GCATACTGCAAGCCCACAG 59.195 57.895 0.00 0.00 44.26 3.66
577 588 1.935933 ACTTCACCACACGACTGAAC 58.064 50.000 0.00 0.00 0.00 3.18
585 596 1.476488 AGCAAACCAACTTCACCACAC 59.524 47.619 0.00 0.00 0.00 3.82
684 695 8.968242 GGTACAGAATTGCAGTTTCTTTTAAAG 58.032 33.333 10.37 0.00 31.11 1.85
696 707 3.001634 CGCATACAGGTACAGAATTGCAG 59.998 47.826 0.00 0.00 0.00 4.41
697 708 2.935849 CGCATACAGGTACAGAATTGCA 59.064 45.455 0.00 0.00 0.00 4.08
698 709 3.194861 TCGCATACAGGTACAGAATTGC 58.805 45.455 0.00 0.00 0.00 3.56
699 710 4.212004 CCATCGCATACAGGTACAGAATTG 59.788 45.833 0.00 0.00 0.00 2.32
700 711 4.380531 CCATCGCATACAGGTACAGAATT 58.619 43.478 0.00 0.00 0.00 2.17
706 718 0.602905 GGCCCATCGCATACAGGTAC 60.603 60.000 0.00 0.00 40.31 3.34
722 734 4.984146 AAGATTCAGAGGGTTATAGGCC 57.016 45.455 0.00 0.00 0.00 5.19
743 755 4.469945 GGGGCCTGACATATGCTATACTAA 59.530 45.833 0.84 0.00 0.00 2.24
744 756 4.030913 GGGGCCTGACATATGCTATACTA 58.969 47.826 0.84 0.00 0.00 1.82
795 807 4.149598 TCTTCAGCTAAGCATACCGGATA 58.850 43.478 9.46 0.00 34.97 2.59
796 808 2.965831 TCTTCAGCTAAGCATACCGGAT 59.034 45.455 9.46 0.00 34.97 4.18
801 813 5.880054 TTGGTTTCTTCAGCTAAGCATAC 57.120 39.130 0.00 0.00 34.97 2.39
803 815 4.584325 TGTTTGGTTTCTTCAGCTAAGCAT 59.416 37.500 0.00 0.00 34.97 3.79
859 881 1.669115 GCTTCGAGGCAGCTCAACA 60.669 57.895 15.47 0.00 34.15 3.33
891 913 2.511600 ACCAGCATTAGCCGCGAC 60.512 61.111 8.23 0.00 43.56 5.19
928 950 1.079543 CCCAGTGCTCTTCTCGTGG 60.080 63.158 0.00 0.00 0.00 4.94
1042 1069 1.622312 GGGCTAGGGTTTATACTCGGG 59.378 57.143 0.00 0.00 0.00 5.14
1091 1118 4.982916 GCGAGGAATTTAGAGCGAATTAGA 59.017 41.667 0.00 0.00 0.00 2.10
1101 1128 4.141505 TGGGATGATTGCGAGGAATTTAGA 60.142 41.667 0.00 0.00 0.00 2.10
1152 1180 5.213868 ACTAGAGAGGGGAGAAATTCAGA 57.786 43.478 0.00 0.00 0.00 3.27
1170 1198 5.432885 GCTCTACTAGCCTGAAGAACTAG 57.567 47.826 0.00 0.00 46.25 2.57
1190 1218 1.750930 CCAGATATGCTGTCGGGCT 59.249 57.895 0.00 0.00 43.33 5.19
1198 1226 1.274728 GGACGATCAGCCAGATATGCT 59.725 52.381 0.00 0.00 40.41 3.79
1199 1227 1.719600 GGACGATCAGCCAGATATGC 58.280 55.000 0.00 0.00 37.00 3.14
1200 1228 1.988063 CGGACGATCAGCCAGATATG 58.012 55.000 0.00 0.00 37.00 1.78
1201 1229 0.244994 GCGGACGATCAGCCAGATAT 59.755 55.000 0.00 0.00 37.00 1.63
1202 1230 1.660355 GCGGACGATCAGCCAGATA 59.340 57.895 0.00 0.00 37.00 1.98
1356 1384 8.504815 GCGTACTACAATCTCAGAATATGTAGA 58.495 37.037 22.76 10.60 43.80 2.59
1357 1385 8.508062 AGCGTACTACAATCTCAGAATATGTAG 58.492 37.037 17.69 17.69 45.55 2.74
1358 1386 8.392372 AGCGTACTACAATCTCAGAATATGTA 57.608 34.615 0.00 0.12 0.00 2.29
1359 1387 7.278461 AGCGTACTACAATCTCAGAATATGT 57.722 36.000 0.00 0.00 0.00 2.29
1362 1390 8.666573 GCTATAGCGTACTACAATCTCAGAATA 58.333 37.037 9.40 0.00 0.00 1.75
1363 1391 7.531716 GCTATAGCGTACTACAATCTCAGAAT 58.468 38.462 9.40 0.00 0.00 2.40
1364 1392 6.900189 GCTATAGCGTACTACAATCTCAGAA 58.100 40.000 9.40 0.00 0.00 3.02
1365 1393 6.483385 GCTATAGCGTACTACAATCTCAGA 57.517 41.667 9.40 0.00 0.00 3.27
1381 1409 3.577667 TCTCGACTCGACTAGCTATAGC 58.422 50.000 17.33 17.33 42.49 2.97
1382 1410 6.588756 AGAATTCTCGACTCGACTAGCTATAG 59.411 42.308 0.88 0.00 34.96 1.31
1383 1411 6.457355 AGAATTCTCGACTCGACTAGCTATA 58.543 40.000 0.88 0.00 0.00 1.31
1384 1412 5.302360 AGAATTCTCGACTCGACTAGCTAT 58.698 41.667 0.88 0.00 0.00 2.97
1385 1413 4.695396 AGAATTCTCGACTCGACTAGCTA 58.305 43.478 0.88 0.00 0.00 3.32
1386 1414 3.537580 AGAATTCTCGACTCGACTAGCT 58.462 45.455 0.88 0.00 0.00 3.32
1387 1415 3.955771 AGAATTCTCGACTCGACTAGC 57.044 47.619 0.88 0.00 0.00 3.42
1388 1416 5.970140 TGTAGAATTCTCGACTCGACTAG 57.030 43.478 12.24 0.00 0.00 2.57
1389 1417 8.604640 AATATGTAGAATTCTCGACTCGACTA 57.395 34.615 12.24 0.00 0.00 2.59
1390 1418 7.442969 AGAATATGTAGAATTCTCGACTCGACT 59.557 37.037 12.24 1.90 38.98 4.18
1391 1419 7.577979 AGAATATGTAGAATTCTCGACTCGAC 58.422 38.462 12.24 3.22 38.98 4.20
1392 1420 7.731882 AGAATATGTAGAATTCTCGACTCGA 57.268 36.000 12.24 0.29 38.98 4.04
1393 1421 8.789881 AAAGAATATGTAGAATTCTCGACTCG 57.210 34.615 12.24 0.00 41.68 4.18
1424 1452 9.869757 TCAGAATATGTAGAATTCGAACTTCAA 57.130 29.630 17.03 7.46 38.20 2.69
1425 1453 9.521503 CTCAGAATATGTAGAATTCGAACTTCA 57.478 33.333 17.03 9.29 38.20 3.02
1426 1454 9.737427 TCTCAGAATATGTAGAATTCGAACTTC 57.263 33.333 0.00 6.13 38.20 3.01
1437 1465 8.504815 GCGTACTACAATCTCAGAATATGTAGA 58.495 37.037 22.76 10.60 43.80 2.59
1438 1466 8.508062 AGCGTACTACAATCTCAGAATATGTAG 58.492 37.037 17.69 17.69 45.55 2.74
1439 1467 8.392372 AGCGTACTACAATCTCAGAATATGTA 57.608 34.615 0.00 0.12 0.00 2.29
1440 1468 7.278461 AGCGTACTACAATCTCAGAATATGT 57.722 36.000 0.00 0.00 0.00 2.29
1443 1471 8.666573 GCTATAGCGTACTACAATCTCAGAATA 58.333 37.037 9.40 0.00 0.00 1.75
1444 1472 7.531716 GCTATAGCGTACTACAATCTCAGAAT 58.468 38.462 9.40 0.00 0.00 2.40
1445 1473 6.900189 GCTATAGCGTACTACAATCTCAGAA 58.100 40.000 9.40 0.00 0.00 3.02
1446 1474 6.483385 GCTATAGCGTACTACAATCTCAGA 57.517 41.667 9.40 0.00 0.00 3.27
1514 1547 1.617850 ACATACGTACGGGGTTCAACA 59.382 47.619 21.06 0.00 0.00 3.33
1517 1550 3.066621 GTGATACATACGTACGGGGTTCA 59.933 47.826 21.06 15.25 0.00 3.18
1532 1565 1.583556 AGGAGCCACATGGTGATACA 58.416 50.000 0.00 0.00 35.23 2.29
1698 1737 0.723981 GAGGAAGTCGTGCATTCTGC 59.276 55.000 0.00 0.00 45.29 4.26
1906 1948 1.064296 CTCGCCGTGGCTGTAGTAG 59.936 63.158 9.55 0.00 39.32 2.57
1907 1949 3.060020 GCTCGCCGTGGCTGTAGTA 62.060 63.158 9.55 0.00 39.32 1.82
1908 1950 4.436998 GCTCGCCGTGGCTGTAGT 62.437 66.667 9.55 0.00 39.32 2.73
1975 2017 2.433318 AGGAAGCTTCTGCGCGAC 60.433 61.111 25.05 7.42 45.42 5.19
2048 2093 4.103103 GCTTTTCCCGAGCGGCAC 62.103 66.667 1.45 0.00 0.00 5.01
2261 2348 1.180029 TTCTACTCGGTGGGCTGTAC 58.820 55.000 0.00 0.00 0.00 2.90
2262 2349 2.029623 GATTCTACTCGGTGGGCTGTA 58.970 52.381 0.00 0.00 0.00 2.74
2263 2350 0.824759 GATTCTACTCGGTGGGCTGT 59.175 55.000 0.00 0.00 0.00 4.40
2265 2352 0.824759 GTGATTCTACTCGGTGGGCT 59.175 55.000 0.00 0.00 0.00 5.19
2266 2353 0.179081 GGTGATTCTACTCGGTGGGC 60.179 60.000 0.00 0.00 0.00 5.36
2267 2354 0.102481 CGGTGATTCTACTCGGTGGG 59.898 60.000 0.00 0.00 0.00 4.61
2268 2355 0.815734 ACGGTGATTCTACTCGGTGG 59.184 55.000 0.00 0.00 0.00 4.61
2272 2359 1.854743 CATGCACGGTGATTCTACTCG 59.145 52.381 13.29 0.00 0.00 4.18
2319 2406 3.009473 AGCAGGTTCAAATCTAGCCAGAA 59.991 43.478 0.00 0.00 33.50 3.02
2321 2408 2.681848 CAGCAGGTTCAAATCTAGCCAG 59.318 50.000 0.00 0.00 0.00 4.85
2322 2409 2.715046 CAGCAGGTTCAAATCTAGCCA 58.285 47.619 0.00 0.00 0.00 4.75
2323 2410 1.403323 GCAGCAGGTTCAAATCTAGCC 59.597 52.381 0.00 0.00 0.00 3.93
2325 2412 3.943381 TCATGCAGCAGGTTCAAATCTAG 59.057 43.478 6.99 0.00 0.00 2.43
2327 2414 2.799017 TCATGCAGCAGGTTCAAATCT 58.201 42.857 6.99 0.00 0.00 2.40
2328 2415 3.057033 AGTTCATGCAGCAGGTTCAAATC 60.057 43.478 6.99 0.00 0.00 2.17
2490 2594 1.078143 GACAATGGAAGCCGAGCCT 60.078 57.895 0.00 0.00 0.00 4.58
2492 2596 0.955428 TGTGACAATGGAAGCCGAGC 60.955 55.000 0.00 0.00 0.00 5.03
2494 2598 0.321564 CCTGTGACAATGGAAGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
2518 2622 8.215132 CGGATATCGACTAACAAATCTAAAAGC 58.785 37.037 0.00 0.00 42.43 3.51
2535 2639 1.154197 CTACGAGTGCCGGATATCGA 58.846 55.000 23.69 10.44 43.93 3.59
2536 2640 0.168348 CCTACGAGTGCCGGATATCG 59.832 60.000 5.05 13.58 43.93 2.92
2550 2654 0.602638 TGCAGCTGAAACACCCTACG 60.603 55.000 20.43 0.00 0.00 3.51
2579 2683 7.391833 ACTTACAAGCTCAAGGAAGAAAATAGG 59.608 37.037 11.46 0.00 0.00 2.57
2615 2719 4.334759 GGAGATGGTCATCACATTGAAGTG 59.665 45.833 12.75 0.00 40.22 3.16
2616 2720 4.521146 GGAGATGGTCATCACATTGAAGT 58.479 43.478 12.75 0.00 40.22 3.01
2617 2721 3.558829 CGGAGATGGTCATCACATTGAAG 59.441 47.826 12.75 0.00 40.22 3.02
2669 2773 5.957771 AAGATCTTTGGCCACTATCACTA 57.042 39.130 3.88 0.00 0.00 2.74
2674 2778 5.184892 ACAGAAAGATCTTTGGCCACTAT 57.815 39.130 25.12 2.18 32.03 2.12
2675 2779 4.640771 ACAGAAAGATCTTTGGCCACTA 57.359 40.909 25.12 0.00 32.03 2.74
2676 2780 3.515602 ACAGAAAGATCTTTGGCCACT 57.484 42.857 25.12 12.37 32.03 4.00
2678 2782 5.833131 AGTTTAACAGAAAGATCTTTGGCCA 59.167 36.000 25.12 0.00 32.03 5.36
2679 2783 6.152379 CAGTTTAACAGAAAGATCTTTGGCC 58.848 40.000 25.12 10.99 32.03 5.36
2680 2784 6.638468 CACAGTTTAACAGAAAGATCTTTGGC 59.362 38.462 25.12 11.70 32.03 4.52
2681 2785 7.930217 TCACAGTTTAACAGAAAGATCTTTGG 58.070 34.615 25.12 17.92 32.03 3.28
2682 2786 9.604626 GATCACAGTTTAACAGAAAGATCTTTG 57.395 33.333 25.12 14.84 32.03 2.77
2683 2787 8.787852 GGATCACAGTTTAACAGAAAGATCTTT 58.212 33.333 20.60 20.60 32.03 2.52
2697 2801 9.802039 AGGTACTAAAATTTGGATCACAGTTTA 57.198 29.630 0.00 0.00 36.02 2.01
2698 2802 8.576442 CAGGTACTAAAATTTGGATCACAGTTT 58.424 33.333 0.00 0.00 36.02 2.66
2699 2803 7.942341 TCAGGTACTAAAATTTGGATCACAGTT 59.058 33.333 0.00 0.00 36.02 3.16
2700 2804 7.390718 GTCAGGTACTAAAATTTGGATCACAGT 59.609 37.037 0.00 0.00 36.02 3.55
2701 2805 7.390440 TGTCAGGTACTAAAATTTGGATCACAG 59.610 37.037 0.00 0.00 36.02 3.66
2702 2806 7.227873 TGTCAGGTACTAAAATTTGGATCACA 58.772 34.615 0.00 0.00 36.02 3.58
2703 2807 7.606456 TCTGTCAGGTACTAAAATTTGGATCAC 59.394 37.037 0.00 0.00 36.02 3.06
2704 2808 7.685481 TCTGTCAGGTACTAAAATTTGGATCA 58.315 34.615 0.00 0.00 36.02 2.92
2705 2809 8.738645 ATCTGTCAGGTACTAAAATTTGGATC 57.261 34.615 0.00 0.00 36.02 3.36
2707 2811 9.667107 CTAATCTGTCAGGTACTAAAATTTGGA 57.333 33.333 0.00 0.00 36.02 3.53
2708 2812 9.667107 TCTAATCTGTCAGGTACTAAAATTTGG 57.333 33.333 0.00 0.00 36.02 3.28
2710 2814 9.367444 CGTCTAATCTGTCAGGTACTAAAATTT 57.633 33.333 0.00 0.00 36.02 1.82
2711 2815 8.529476 ACGTCTAATCTGTCAGGTACTAAAATT 58.471 33.333 0.00 0.00 36.02 1.82
2712 2816 8.064336 ACGTCTAATCTGTCAGGTACTAAAAT 57.936 34.615 0.00 0.00 36.02 1.82
2713 2817 7.458409 ACGTCTAATCTGTCAGGTACTAAAA 57.542 36.000 0.00 0.00 36.02 1.52
2714 2818 7.826252 ACTACGTCTAATCTGTCAGGTACTAAA 59.174 37.037 0.00 0.00 36.02 1.85
2715 2819 7.334090 ACTACGTCTAATCTGTCAGGTACTAA 58.666 38.462 0.00 0.00 36.02 2.24
2716 2820 6.882656 ACTACGTCTAATCTGTCAGGTACTA 58.117 40.000 0.00 0.00 36.02 1.82
2717 2821 5.743117 ACTACGTCTAATCTGTCAGGTACT 58.257 41.667 0.00 0.00 43.88 2.73
2718 2822 6.536582 TGTACTACGTCTAATCTGTCAGGTAC 59.463 42.308 0.00 1.57 0.00 3.34
2719 2823 6.643388 TGTACTACGTCTAATCTGTCAGGTA 58.357 40.000 0.00 0.00 0.00 3.08
2720 2824 5.494724 TGTACTACGTCTAATCTGTCAGGT 58.505 41.667 0.00 0.00 0.00 4.00
2721 2825 6.256686 GTTGTACTACGTCTAATCTGTCAGG 58.743 44.000 0.00 0.00 0.00 3.86
2722 2826 6.256686 GGTTGTACTACGTCTAATCTGTCAG 58.743 44.000 0.00 0.00 0.00 3.51
2723 2827 5.163824 CGGTTGTACTACGTCTAATCTGTCA 60.164 44.000 0.00 0.00 0.00 3.58
2724 2828 5.261661 CGGTTGTACTACGTCTAATCTGTC 58.738 45.833 0.00 0.00 0.00 3.51
2725 2829 4.095483 CCGGTTGTACTACGTCTAATCTGT 59.905 45.833 0.00 0.00 0.00 3.41
2726 2830 4.095483 ACCGGTTGTACTACGTCTAATCTG 59.905 45.833 0.00 0.00 0.00 2.90
2727 2831 4.095483 CACCGGTTGTACTACGTCTAATCT 59.905 45.833 2.97 0.00 0.00 2.40
2728 2832 4.142600 ACACCGGTTGTACTACGTCTAATC 60.143 45.833 2.97 0.00 36.32 1.75
2729 2833 3.758554 ACACCGGTTGTACTACGTCTAAT 59.241 43.478 2.97 0.00 36.32 1.73
2730 2834 3.058293 CACACCGGTTGTACTACGTCTAA 60.058 47.826 2.97 0.00 35.67 2.10
2731 2835 2.483877 CACACCGGTTGTACTACGTCTA 59.516 50.000 2.97 0.00 35.67 2.59
2732 2836 1.267806 CACACCGGTTGTACTACGTCT 59.732 52.381 2.97 0.00 35.67 4.18
2733 2837 1.666888 CCACACCGGTTGTACTACGTC 60.667 57.143 2.97 0.00 35.67 4.34
2734 2838 0.314935 CCACACCGGTTGTACTACGT 59.685 55.000 2.97 0.00 35.67 3.57
2735 2839 0.388907 CCCACACCGGTTGTACTACG 60.389 60.000 2.97 0.00 35.67 3.51
2736 2840 0.037046 CCCCACACCGGTTGTACTAC 60.037 60.000 2.97 0.00 35.67 2.73
2737 2841 1.829523 GCCCCACACCGGTTGTACTA 61.830 60.000 2.97 0.00 35.67 1.82
2738 2842 3.153825 CCCCACACCGGTTGTACT 58.846 61.111 2.97 0.00 35.67 2.73
2739 2843 2.670592 GCCCCACACCGGTTGTAC 60.671 66.667 2.97 0.00 35.67 2.90
2740 2844 4.317444 CGCCCCACACCGGTTGTA 62.317 66.667 2.97 0.00 35.67 2.41
2748 2852 4.992511 TAACGCCACGCCCCACAC 62.993 66.667 0.00 0.00 0.00 3.82
2749 2853 3.554696 ATTAACGCCACGCCCCACA 62.555 57.895 0.00 0.00 0.00 4.17
2750 2854 2.748647 ATTAACGCCACGCCCCAC 60.749 61.111 0.00 0.00 0.00 4.61
2751 2855 2.748251 CATTAACGCCACGCCCCA 60.748 61.111 0.00 0.00 0.00 4.96
2752 2856 4.187810 GCATTAACGCCACGCCCC 62.188 66.667 0.00 0.00 0.00 5.80
2761 2865 3.256105 TACGCGCCGGCATTAACG 61.256 61.111 28.98 22.26 39.92 3.18
2762 2866 2.322081 GTACGCGCCGGCATTAAC 59.678 61.111 28.98 15.07 39.92 2.01
2763 2867 3.256105 CGTACGCGCCGGCATTAA 61.256 61.111 28.98 5.75 39.92 1.40
2764 2868 4.190568 TCGTACGCGCCGGCATTA 62.191 61.111 28.98 11.08 39.92 1.90
2769 2873 3.665825 TTGTACTCGTACGCGCCGG 62.666 63.158 11.24 0.00 38.85 6.13
2770 2874 2.202336 TTGTACTCGTACGCGCCG 60.202 61.111 11.24 9.62 38.85 6.46
2771 2875 0.730494 AAGTTGTACTCGTACGCGCC 60.730 55.000 11.24 0.00 38.85 6.53
2772 2876 0.361184 CAAGTTGTACTCGTACGCGC 59.639 55.000 11.24 0.00 38.85 6.86
2773 2877 1.678360 ACAAGTTGTACTCGTACGCG 58.322 50.000 11.24 3.53 38.85 6.01
2774 2878 4.676924 AGTAAACAAGTTGTACTCGTACGC 59.323 41.667 11.24 0.00 38.85 4.42
2775 2879 6.566298 CAAGTAAACAAGTTGTACTCGTACG 58.434 40.000 9.37 9.53 38.85 3.67
2785 2889 5.828299 TTGGAGGACAAGTAAACAAGTTG 57.172 39.130 0.00 0.00 43.15 3.16
2786 2890 6.844097 TTTTGGAGGACAAGTAAACAAGTT 57.156 33.333 0.00 0.00 40.82 2.66
2787 2891 6.436218 AGTTTTTGGAGGACAAGTAAACAAGT 59.564 34.615 8.95 0.00 40.08 3.16
2788 2892 6.863275 AGTTTTTGGAGGACAAGTAAACAAG 58.137 36.000 8.95 0.00 40.08 3.16
2789 2893 6.661805 AGAGTTTTTGGAGGACAAGTAAACAA 59.338 34.615 8.95 0.00 40.08 2.83
2790 2894 6.184789 AGAGTTTTTGGAGGACAAGTAAACA 58.815 36.000 8.95 0.00 40.08 2.83
2791 2895 6.694877 AGAGTTTTTGGAGGACAAGTAAAC 57.305 37.500 0.00 0.00 40.82 2.01
2792 2896 8.846211 CATAAGAGTTTTTGGAGGACAAGTAAA 58.154 33.333 0.00 0.00 40.82 2.01
2793 2897 7.996644 ACATAAGAGTTTTTGGAGGACAAGTAA 59.003 33.333 0.00 0.00 40.82 2.24
2794 2898 7.514721 ACATAAGAGTTTTTGGAGGACAAGTA 58.485 34.615 0.00 0.00 40.82 2.24
2795 2899 6.365520 ACATAAGAGTTTTTGGAGGACAAGT 58.634 36.000 0.00 0.00 40.82 3.16
2796 2900 6.884280 ACATAAGAGTTTTTGGAGGACAAG 57.116 37.500 0.00 0.00 40.82 3.16
2797 2901 8.792633 CAATACATAAGAGTTTTTGGAGGACAA 58.207 33.333 0.00 0.00 37.28 3.18
2798 2902 7.094377 GCAATACATAAGAGTTTTTGGAGGACA 60.094 37.037 0.00 0.00 0.00 4.02
2799 2903 7.251281 GCAATACATAAGAGTTTTTGGAGGAC 58.749 38.462 0.00 0.00 0.00 3.85
2800 2904 6.377146 GGCAATACATAAGAGTTTTTGGAGGA 59.623 38.462 0.00 0.00 0.00 3.71
2801 2905 6.405842 GGGCAATACATAAGAGTTTTTGGAGG 60.406 42.308 0.00 0.00 0.00 4.30
2802 2906 6.378280 AGGGCAATACATAAGAGTTTTTGGAG 59.622 38.462 0.00 0.00 0.00 3.86
2803 2907 6.252995 AGGGCAATACATAAGAGTTTTTGGA 58.747 36.000 0.00 0.00 0.00 3.53
2804 2908 6.152661 TGAGGGCAATACATAAGAGTTTTTGG 59.847 38.462 0.00 0.00 0.00 3.28
2805 2909 7.156876 TGAGGGCAATACATAAGAGTTTTTG 57.843 36.000 0.00 0.00 0.00 2.44
2806 2910 7.961326 ATGAGGGCAATACATAAGAGTTTTT 57.039 32.000 0.00 0.00 0.00 1.94
2813 2917 9.561069 GGGTTATATATGAGGGCAATACATAAG 57.439 37.037 0.00 0.00 31.75 1.73
2814 2918 8.499406 GGGGTTATATATGAGGGCAATACATAA 58.501 37.037 0.00 0.00 31.75 1.90
2815 2919 7.629721 TGGGGTTATATATGAGGGCAATACATA 59.370 37.037 0.00 0.00 0.00 2.29
2816 2920 6.450024 TGGGGTTATATATGAGGGCAATACAT 59.550 38.462 0.00 0.00 0.00 2.29
2817 2921 5.793237 TGGGGTTATATATGAGGGCAATACA 59.207 40.000 0.00 0.00 0.00 2.29
2818 2922 6.321821 TGGGGTTATATATGAGGGCAATAC 57.678 41.667 0.00 0.00 0.00 1.89
2819 2923 6.450024 ACATGGGGTTATATATGAGGGCAATA 59.550 38.462 0.00 0.00 0.00 1.90
2820 2924 5.256152 ACATGGGGTTATATATGAGGGCAAT 59.744 40.000 0.00 0.00 0.00 3.56
2821 2925 4.605813 ACATGGGGTTATATATGAGGGCAA 59.394 41.667 0.00 0.00 0.00 4.52
2822 2926 4.018506 CACATGGGGTTATATATGAGGGCA 60.019 45.833 0.00 0.00 0.00 5.36
2823 2927 4.526970 CACATGGGGTTATATATGAGGGC 58.473 47.826 0.00 0.00 0.00 5.19
2824 2928 4.628715 GCCACATGGGGTTATATATGAGGG 60.629 50.000 17.28 0.00 37.04 4.30
2825 2929 4.526970 GCCACATGGGGTTATATATGAGG 58.473 47.826 17.28 0.00 37.04 3.86
2826 2930 4.526970 GGCCACATGGGGTTATATATGAG 58.473 47.826 17.28 0.00 37.04 2.90
2827 2931 3.054728 CGGCCACATGGGGTTATATATGA 60.055 47.826 17.28 0.00 37.04 2.15
2828 2932 3.278574 CGGCCACATGGGGTTATATATG 58.721 50.000 17.28 0.00 37.04 1.78
2829 2933 2.356741 GCGGCCACATGGGGTTATATAT 60.357 50.000 17.28 0.00 37.04 0.86
2830 2934 1.003812 GCGGCCACATGGGGTTATATA 59.996 52.381 17.28 0.00 37.04 0.86
2831 2935 0.251165 GCGGCCACATGGGGTTATAT 60.251 55.000 17.28 0.00 37.04 0.86
2832 2936 1.149627 GCGGCCACATGGGGTTATA 59.850 57.895 17.28 0.00 37.04 0.98
2833 2937 2.123897 GCGGCCACATGGGGTTAT 60.124 61.111 17.28 0.00 37.04 1.89
2834 2938 3.652013 TGCGGCCACATGGGGTTA 61.652 61.111 17.28 0.00 37.04 2.85
2837 2941 3.636929 TTAGTGCGGCCACATGGGG 62.637 63.158 10.61 10.61 44.53 4.96
2838 2942 1.656818 CTTTAGTGCGGCCACATGGG 61.657 60.000 2.24 0.00 44.53 4.00
2839 2943 0.676466 TCTTTAGTGCGGCCACATGG 60.676 55.000 2.24 0.00 44.53 3.66
2840 2944 0.447801 GTCTTTAGTGCGGCCACATG 59.552 55.000 2.24 0.00 44.53 3.21
2841 2945 1.019278 CGTCTTTAGTGCGGCCACAT 61.019 55.000 2.24 0.00 44.53 3.21
2842 2946 1.666553 CGTCTTTAGTGCGGCCACA 60.667 57.895 2.24 0.00 44.53 4.17
2843 2947 1.666872 ACGTCTTTAGTGCGGCCAC 60.667 57.895 2.24 0.00 42.39 5.01
2844 2948 1.666553 CACGTCTTTAGTGCGGCCA 60.667 57.895 2.24 0.00 32.52 5.36
2845 2949 1.666872 ACACGTCTTTAGTGCGGCC 60.667 57.895 0.00 0.00 42.94 6.13
2846 2950 1.219522 ACACACGTCTTTAGTGCGGC 61.220 55.000 3.11 0.00 42.94 6.53
2847 2951 0.782384 GACACACGTCTTTAGTGCGG 59.218 55.000 3.11 0.00 42.94 5.69
2848 2952 0.429736 CGACACACGTCTTTAGTGCG 59.570 55.000 3.11 4.67 42.94 5.34
2860 2964 0.317938 AGAAGCACGAGACGACACAC 60.318 55.000 0.00 0.00 0.00 3.82
2861 2965 1.232119 TAGAAGCACGAGACGACACA 58.768 50.000 0.00 0.00 0.00 3.72
2862 2966 2.327081 TTAGAAGCACGAGACGACAC 57.673 50.000 0.00 0.00 0.00 3.67
2863 2967 3.688185 AGTATTAGAAGCACGAGACGACA 59.312 43.478 0.00 0.00 0.00 4.35
2864 2968 4.275838 AGTATTAGAAGCACGAGACGAC 57.724 45.455 0.00 0.00 0.00 4.34
2865 2969 4.634883 AGAAGTATTAGAAGCACGAGACGA 59.365 41.667 0.00 0.00 0.00 4.20
2866 2970 4.911053 AGAAGTATTAGAAGCACGAGACG 58.089 43.478 0.00 0.00 0.00 4.18
2867 2971 5.163642 TGGAGAAGTATTAGAAGCACGAGAC 60.164 44.000 0.00 0.00 0.00 3.36
2868 2972 4.948004 TGGAGAAGTATTAGAAGCACGAGA 59.052 41.667 0.00 0.00 0.00 4.04
2869 2973 5.250235 TGGAGAAGTATTAGAAGCACGAG 57.750 43.478 0.00 0.00 0.00 4.18
2870 2974 5.359860 TGATGGAGAAGTATTAGAAGCACGA 59.640 40.000 0.00 0.00 0.00 4.35
2871 2975 5.592054 TGATGGAGAAGTATTAGAAGCACG 58.408 41.667 0.00 0.00 0.00 5.34
2872 2976 8.364142 ACTATGATGGAGAAGTATTAGAAGCAC 58.636 37.037 0.00 0.00 0.00 4.40
2873 2977 8.363390 CACTATGATGGAGAAGTATTAGAAGCA 58.637 37.037 0.00 0.00 0.00 3.91
2874 2978 8.580720 TCACTATGATGGAGAAGTATTAGAAGC 58.419 37.037 0.00 0.00 0.00 3.86
2878 2982 9.149225 GCAATCACTATGATGGAGAAGTATTAG 57.851 37.037 0.00 0.00 37.15 1.73
2879 2983 7.814587 CGCAATCACTATGATGGAGAAGTATTA 59.185 37.037 0.00 0.00 37.15 0.98
2880 2984 6.648310 CGCAATCACTATGATGGAGAAGTATT 59.352 38.462 0.00 0.00 37.15 1.89
2881 2985 6.162079 CGCAATCACTATGATGGAGAAGTAT 58.838 40.000 0.00 0.00 37.15 2.12
2882 2986 5.532557 CGCAATCACTATGATGGAGAAGTA 58.467 41.667 0.00 0.00 37.15 2.24
2883 2987 4.375272 CGCAATCACTATGATGGAGAAGT 58.625 43.478 0.00 0.00 37.15 3.01
2884 2988 3.186001 GCGCAATCACTATGATGGAGAAG 59.814 47.826 0.30 0.00 37.15 2.85
2885 2989 3.133691 GCGCAATCACTATGATGGAGAA 58.866 45.455 0.30 0.00 37.15 2.87
2886 2990 2.102925 TGCGCAATCACTATGATGGAGA 59.897 45.455 8.16 0.00 37.15 3.71
2887 2991 2.486918 TGCGCAATCACTATGATGGAG 58.513 47.619 8.16 0.00 37.15 3.86
2888 2992 2.618442 TGCGCAATCACTATGATGGA 57.382 45.000 8.16 0.00 37.15 3.41
2889 2993 3.666111 CGAATGCGCAATCACTATGATGG 60.666 47.826 24.21 1.81 37.15 3.51
2890 2994 3.059393 ACGAATGCGCAATCACTATGATG 60.059 43.478 24.21 8.49 42.48 3.07
2891 2995 3.059393 CACGAATGCGCAATCACTATGAT 60.059 43.478 24.21 0.00 42.48 2.45
2892 2996 2.284952 CACGAATGCGCAATCACTATGA 59.715 45.455 24.21 0.00 42.48 2.15
2893 2997 2.632228 CACGAATGCGCAATCACTATG 58.368 47.619 24.21 12.69 42.48 2.23
2894 2998 1.003545 GCACGAATGCGCAATCACTAT 60.004 47.619 24.21 4.64 43.33 2.12
2895 2999 0.373370 GCACGAATGCGCAATCACTA 59.627 50.000 24.21 0.00 43.33 2.74
2896 3000 1.135315 GCACGAATGCGCAATCACT 59.865 52.632 24.21 6.55 43.33 3.41
2897 3001 3.666730 GCACGAATGCGCAATCAC 58.333 55.556 24.21 9.95 43.33 3.06
2906 3010 0.586319 AAACCACAGACGCACGAATG 59.414 50.000 0.00 0.00 0.00 2.67
2907 3011 1.263217 GAAAACCACAGACGCACGAAT 59.737 47.619 0.00 0.00 0.00 3.34
2908 3012 0.653636 GAAAACCACAGACGCACGAA 59.346 50.000 0.00 0.00 0.00 3.85
2909 3013 0.179094 AGAAAACCACAGACGCACGA 60.179 50.000 0.00 0.00 0.00 4.35
2910 3014 0.232303 GAGAAAACCACAGACGCACG 59.768 55.000 0.00 0.00 0.00 5.34
2911 3015 0.586802 GGAGAAAACCACAGACGCAC 59.413 55.000 0.00 0.00 0.00 5.34
2912 3016 0.534203 GGGAGAAAACCACAGACGCA 60.534 55.000 0.00 0.00 0.00 5.24
2913 3017 0.534203 TGGGAGAAAACCACAGACGC 60.534 55.000 0.00 0.00 31.83 5.19
2914 3018 3.698250 TGGGAGAAAACCACAGACG 57.302 52.632 0.00 0.00 31.83 4.18
2930 3034 4.904253 TTTTACGAGAAAACCCTTGTGG 57.096 40.909 0.00 0.00 41.37 4.17
2938 3042 5.147767 AGACACGGTTTTTACGAGAAAAC 57.852 39.130 16.97 16.97 44.70 2.43
2939 3043 6.019640 CAGTAGACACGGTTTTTACGAGAAAA 60.020 38.462 0.00 0.00 34.93 2.29
2940 3044 5.459762 CAGTAGACACGGTTTTTACGAGAAA 59.540 40.000 0.00 0.00 34.93 2.52
2941 3045 4.977963 CAGTAGACACGGTTTTTACGAGAA 59.022 41.667 0.00 0.00 34.93 2.87
2942 3046 4.036734 ACAGTAGACACGGTTTTTACGAGA 59.963 41.667 0.00 0.00 34.93 4.04
2943 3047 4.147653 CACAGTAGACACGGTTTTTACGAG 59.852 45.833 0.00 0.00 29.98 4.18
2944 3048 4.043750 CACAGTAGACACGGTTTTTACGA 58.956 43.478 0.00 0.00 29.98 3.43
2945 3049 3.798337 ACACAGTAGACACGGTTTTTACG 59.202 43.478 0.00 0.00 29.98 3.18
2946 3050 5.045872 AGACACAGTAGACACGGTTTTTAC 58.954 41.667 0.00 0.00 29.98 2.01
2947 3051 5.266733 AGACACAGTAGACACGGTTTTTA 57.733 39.130 0.00 0.00 29.98 1.52
2948 3052 4.117685 GAGACACAGTAGACACGGTTTTT 58.882 43.478 0.00 0.00 29.98 1.94
2949 3053 3.714391 GAGACACAGTAGACACGGTTTT 58.286 45.455 0.00 0.00 29.98 2.43
2950 3054 2.287427 CGAGACACAGTAGACACGGTTT 60.287 50.000 0.00 0.00 29.98 3.27
2951 3055 1.266175 CGAGACACAGTAGACACGGTT 59.734 52.381 0.00 0.00 29.98 4.44
2952 3056 0.873054 CGAGACACAGTAGACACGGT 59.127 55.000 0.00 0.00 32.92 4.83
2953 3057 0.873054 ACGAGACACAGTAGACACGG 59.127 55.000 0.00 0.00 0.00 4.94
2954 3058 2.032290 TCAACGAGACACAGTAGACACG 60.032 50.000 0.00 0.00 0.00 4.49
2955 3059 3.620929 TCAACGAGACACAGTAGACAC 57.379 47.619 0.00 0.00 0.00 3.67
2956 3060 4.072839 AGATCAACGAGACACAGTAGACA 58.927 43.478 0.00 0.00 0.00 3.41
2957 3061 4.654015 GAGATCAACGAGACACAGTAGAC 58.346 47.826 0.00 0.00 0.00 2.59
2958 3062 3.371285 CGAGATCAACGAGACACAGTAGA 59.629 47.826 6.49 0.00 0.00 2.59
2959 3063 3.125487 ACGAGATCAACGAGACACAGTAG 59.875 47.826 16.73 0.00 34.70 2.57
2960 3064 3.072211 ACGAGATCAACGAGACACAGTA 58.928 45.455 16.73 0.00 34.70 2.74
2961 3065 1.880675 ACGAGATCAACGAGACACAGT 59.119 47.619 16.73 0.00 34.70 3.55
2962 3066 2.620779 ACGAGATCAACGAGACACAG 57.379 50.000 16.73 0.00 34.70 3.66
2963 3067 3.364889 AAACGAGATCAACGAGACACA 57.635 42.857 16.73 0.00 34.70 3.72
2964 3068 5.800941 AGATAAAACGAGATCAACGAGACAC 59.199 40.000 16.73 5.99 34.70 3.67
2965 3069 5.950883 AGATAAAACGAGATCAACGAGACA 58.049 37.500 16.73 2.94 34.70 3.41
2966 3070 7.484007 TGTTAGATAAAACGAGATCAACGAGAC 59.516 37.037 16.73 4.82 31.76 3.36
2967 3071 7.484007 GTGTTAGATAAAACGAGATCAACGAGA 59.516 37.037 16.73 0.00 31.76 4.04
2968 3072 7.485277 AGTGTTAGATAAAACGAGATCAACGAG 59.515 37.037 16.73 0.00 31.76 4.18
2969 3073 7.310664 AGTGTTAGATAAAACGAGATCAACGA 58.689 34.615 16.73 0.00 31.76 3.85
2970 3074 7.507672 AGTGTTAGATAAAACGAGATCAACG 57.492 36.000 10.02 10.02 31.76 4.10
2971 3075 9.742552 GAAAGTGTTAGATAAAACGAGATCAAC 57.257 33.333 0.00 0.00 31.76 3.18
2972 3076 9.706691 AGAAAGTGTTAGATAAAACGAGATCAA 57.293 29.630 0.00 0.00 31.76 2.57
2986 3090 9.929180 GTGATGCCATATATAGAAAGTGTTAGA 57.071 33.333 0.00 0.00 0.00 2.10
2987 3091 9.710900 TGTGATGCCATATATAGAAAGTGTTAG 57.289 33.333 0.00 0.00 0.00 2.34
3001 3105 8.752187 AGAAAAACAGTTTATGTGATGCCATAT 58.248 29.630 0.00 0.00 43.00 1.78
3034 3138 8.661257 TCCATTACAATTATAACTGTGTGTTCG 58.339 33.333 9.75 0.00 39.89 3.95
3042 3148 6.293407 CCGCCAGTCCATTACAATTATAACTG 60.293 42.308 0.00 0.00 34.18 3.16
3044 3150 5.562113 GCCGCCAGTCCATTACAATTATAAC 60.562 44.000 0.00 0.00 0.00 1.89
3045 3151 4.517453 GCCGCCAGTCCATTACAATTATAA 59.483 41.667 0.00 0.00 0.00 0.98
3073 3179 6.511017 AAACCCTACCCCTATGATTTAGTC 57.489 41.667 0.00 0.00 0.00 2.59
3074 3180 6.920695 AAAACCCTACCCCTATGATTTAGT 57.079 37.500 0.00 0.00 0.00 2.24
3075 3181 7.351166 TGAAAAACCCTACCCCTATGATTTAG 58.649 38.462 0.00 0.00 0.00 1.85
3077 3183 6.160483 TGAAAAACCCTACCCCTATGATTT 57.840 37.500 0.00 0.00 0.00 2.17
3079 3185 4.168088 CCTGAAAAACCCTACCCCTATGAT 59.832 45.833 0.00 0.00 0.00 2.45
3083 4870 3.008340 ACCTGAAAAACCCTACCCCTA 57.992 47.619 0.00 0.00 0.00 3.53
3130 4917 7.170277 TCTCCCTTATTAACAGGTTAACCAAC 58.830 38.462 26.26 0.00 37.80 3.77
3131 4918 7.238096 TCTCTCCCTTATTAACAGGTTAACCAA 59.762 37.037 26.26 12.15 37.80 3.67
3132 4919 6.731919 TCTCTCCCTTATTAACAGGTTAACCA 59.268 38.462 26.26 5.71 37.80 3.67
3133 4920 7.191593 TCTCTCCCTTATTAACAGGTTAACC 57.808 40.000 17.41 17.41 37.80 2.85
3134 4921 7.226918 GCATCTCTCCCTTATTAACAGGTTAAC 59.773 40.741 6.76 0.00 37.80 2.01
3135 4922 7.127339 AGCATCTCTCCCTTATTAACAGGTTAA 59.873 37.037 7.04 7.04 39.12 2.01
3136 4923 6.615726 AGCATCTCTCCCTTATTAACAGGTTA 59.384 38.462 2.53 0.00 0.00 2.85
3137 4924 5.430089 AGCATCTCTCCCTTATTAACAGGTT 59.570 40.000 2.53 0.00 0.00 3.50
3316 5413 1.215647 GTCACGTACAGGGGCTCAG 59.784 63.158 0.00 0.00 0.00 3.35
3338 5435 2.202987 GGGCATGCTGTCTCGAGG 60.203 66.667 18.92 0.00 0.00 4.63
3506 5607 1.419012 TGCAGGCCAGATTGGATCTAG 59.581 52.381 5.01 0.00 40.96 2.43
3550 5651 2.524636 CTTTGCTTCGCTCTGGCAGC 62.525 60.000 10.34 0.00 45.85 5.25
3554 5655 1.518056 TTGCCTTTGCTTCGCTCTGG 61.518 55.000 0.00 0.00 38.71 3.86
3665 5770 7.121759 GTGATAGATGGGTAATGCATTATGCTT 59.878 37.037 21.52 9.28 45.31 3.91
3666 5771 6.600822 GTGATAGATGGGTAATGCATTATGCT 59.399 38.462 21.52 15.39 45.31 3.79
3667 5772 6.183360 GGTGATAGATGGGTAATGCATTATGC 60.183 42.308 21.52 10.65 45.29 3.14
3668 5773 6.319658 GGGTGATAGATGGGTAATGCATTATG 59.680 42.308 21.52 0.00 0.00 1.90
3669 5774 6.426587 GGGTGATAGATGGGTAATGCATTAT 58.573 40.000 21.52 7.27 0.00 1.28
3670 5775 5.570641 CGGGTGATAGATGGGTAATGCATTA 60.571 44.000 15.21 15.21 0.00 1.90
3671 5776 4.666512 GGGTGATAGATGGGTAATGCATT 58.333 43.478 17.56 17.56 0.00 3.56
3672 5777 3.307691 CGGGTGATAGATGGGTAATGCAT 60.308 47.826 0.00 0.00 0.00 3.96
3673 5778 2.038426 CGGGTGATAGATGGGTAATGCA 59.962 50.000 0.00 0.00 0.00 3.96
3701 5806 0.533085 GAGGCCGGTAATGGAGAAGC 60.533 60.000 1.90 0.00 0.00 3.86
3733 5838 2.234896 TACCCATCACTGTAACCGGA 57.765 50.000 9.46 0.00 0.00 5.14
3734 5839 2.484770 CCATACCCATCACTGTAACCGG 60.485 54.545 0.00 0.00 0.00 5.28
3788 7689 0.108992 TCCGGTAACACAAGCTAGCG 60.109 55.000 9.55 0.00 37.13 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.