Multiple sequence alignment - TraesCS6D01G295000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G295000 chr6D 100.000 2773 0 0 1 2773 406104210 406106982 0.000000e+00 5121.0
1 TraesCS6D01G295000 chr6D 93.571 140 9 0 120 259 406001659 406001798 2.800000e-50 209.0
2 TraesCS6D01G295000 chr6A 91.284 2811 141 45 1 2773 552483650 552486394 0.000000e+00 3738.0
3 TraesCS6D01G295000 chr6B 93.290 1073 47 12 944 2004 609925110 609926169 0.000000e+00 1559.0
4 TraesCS6D01G295000 chr6B 90.216 971 39 27 7 959 609924164 609925096 0.000000e+00 1216.0
5 TraesCS6D01G295000 chr6B 91.024 713 59 4 1996 2706 609926554 609927263 0.000000e+00 957.0
6 TraesCS6D01G295000 chr6B 90.909 44 4 0 2618 2661 374029677 374029720 2.980000e-05 60.2
7 TraesCS6D01G295000 chr6B 90.909 44 4 0 2618 2661 651612831 651612788 2.980000e-05 60.2
8 TraesCS6D01G295000 chr6B 85.455 55 8 0 2616 2670 527033744 527033690 1.070000e-04 58.4
9 TraesCS6D01G295000 chr5A 83.764 271 40 2 2260 2529 367787588 367787321 1.270000e-63 254.0
10 TraesCS6D01G295000 chr2B 80.851 282 53 1 2315 2595 450448841 450448560 1.290000e-53 220.0
11 TraesCS6D01G295000 chr1A 77.745 337 67 6 2254 2586 360454592 360454260 1.680000e-47 200.0
12 TraesCS6D01G295000 chr1A 80.272 147 25 4 2468 2612 281648336 281648192 1.050000e-19 108.0
13 TraesCS6D01G295000 chr2A 79.208 303 39 12 2307 2608 114567110 114566831 3.650000e-44 189.0
14 TraesCS6D01G295000 chr3A 82.292 192 29 2 2314 2500 702600110 702599919 7.950000e-36 161.0
15 TraesCS6D01G295000 chr3A 86.765 68 9 0 2047 2114 696700001 696699934 2.960000e-10 76.8
16 TraesCS6D01G295000 chr1D 80.368 163 30 2 2451 2612 218891751 218891590 3.750000e-24 122.0
17 TraesCS6D01G295000 chr1D 84.211 57 8 1 2618 2674 383804980 383805035 1.000000e-03 54.7
18 TraesCS6D01G295000 chr3D 75.812 277 45 6 2337 2612 82366786 82366531 1.350000e-23 121.0
19 TraesCS6D01G295000 chr3D 74.729 277 47 8 2309 2583 340435361 340435106 4.890000e-18 102.0
20 TraesCS6D01G295000 chr2D 78.882 161 31 3 2425 2583 317599834 317599993 3.780000e-19 106.0
21 TraesCS6D01G295000 chr2D 84.211 57 8 1 2618 2674 454934956 454935011 1.000000e-03 54.7
22 TraesCS6D01G295000 chr3B 76.440 191 40 5 2425 2612 24520846 24520658 6.320000e-17 99.0
23 TraesCS6D01G295000 chr1B 75.694 144 21 7 2107 2236 648791443 648791300 2.980000e-05 60.2
24 TraesCS6D01G295000 chr5D 90.244 41 4 0 2610 2650 424562344 424562384 1.000000e-03 54.7
25 TraesCS6D01G295000 chr4B 87.500 48 4 2 2618 2664 370691290 370691244 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G295000 chr6D 406104210 406106982 2772 False 5121 5121 100.000 1 2773 1 chr6D.!!$F2 2772
1 TraesCS6D01G295000 chr6A 552483650 552486394 2744 False 3738 3738 91.284 1 2773 1 chr6A.!!$F1 2772
2 TraesCS6D01G295000 chr6B 609924164 609927263 3099 False 1244 1559 91.510 7 2706 3 chr6B.!!$F2 2699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1031 0.174617 AGCTAGCGCCTGAGAGAAAC 59.825 55.0 9.55 0.0 36.6 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2654 3134 0.035343 GTTAAGGACCACTCCAGCCC 60.035 60.0 0.0 0.0 39.39 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.269102 ACAAACTGTGTCGAGTCTCGG 60.269 52.381 21.63 8.05 40.88 4.63
172 173 3.118408 TCTCCATGTGAAGGGGTAAATCG 60.118 47.826 0.00 0.00 0.00 3.34
191 192 2.736682 GATTCCACAACGCCGTCGG 61.737 63.158 6.99 6.99 40.69 4.79
192 193 4.973055 TTCCACAACGCCGTCGGG 62.973 66.667 14.38 5.79 40.69 5.14
259 264 0.597568 TTCACTTTGGCCGATTGCTG 59.402 50.000 0.00 0.00 40.92 4.41
294 305 3.004315 TGAAAAGAAGCCGCACCTAAAAG 59.996 43.478 0.00 0.00 0.00 2.27
331 342 2.480419 CCTCAAAGCTACAAAGGTGTCG 59.520 50.000 0.00 0.00 39.30 4.35
333 344 1.069227 CAAAGCTACAAAGGTGTCGCC 60.069 52.381 0.00 0.00 45.26 5.54
334 345 0.949105 AAGCTACAAAGGTGTCGCCG 60.949 55.000 0.00 0.00 45.26 6.46
335 346 2.388232 GCTACAAAGGTGTCGCCGG 61.388 63.158 0.00 0.00 39.84 6.13
368 379 0.839853 ATCTCCTAGCAGGGCATCCC 60.840 60.000 0.00 0.00 45.90 3.85
455 475 4.216687 TGACCACCCGCAAATTTTAACTAG 59.783 41.667 0.00 0.00 0.00 2.57
458 478 5.181811 ACCACCCGCAAATTTTAACTAGTAC 59.818 40.000 0.00 0.00 0.00 2.73
490 513 5.362263 GTGTAGTCTAGTCCTCTAGTGGAG 58.638 50.000 13.84 3.26 42.88 3.86
497 520 3.897239 AGTCCTCTAGTGGAGTCAGATG 58.103 50.000 13.84 0.00 40.30 2.90
498 521 3.268334 AGTCCTCTAGTGGAGTCAGATGT 59.732 47.826 13.84 0.00 40.30 3.06
539 563 8.822652 AAAGCATTTTCTGTTAGAAGAATTGG 57.177 30.769 0.00 0.00 31.62 3.16
542 566 9.077885 AGCATTTTCTGTTAGAAGAATTGGTAA 57.922 29.630 0.00 0.00 35.37 2.85
561 585 4.991687 GGTAATGAAAAGATCGAGCTAGGG 59.008 45.833 2.34 0.00 0.00 3.53
562 586 4.762289 AATGAAAAGATCGAGCTAGGGT 57.238 40.909 2.34 0.00 0.00 4.34
563 587 5.871396 AATGAAAAGATCGAGCTAGGGTA 57.129 39.130 2.34 0.00 0.00 3.69
605 629 9.188588 GCTGATCACCAAATGTTTATGAATATG 57.811 33.333 0.00 0.00 0.00 1.78
618 642 7.658167 TGTTTATGAATATGTACATACACGGGG 59.342 37.037 17.69 0.00 39.30 5.73
625 649 1.396607 TACATACACGGGGCGATGCT 61.397 55.000 0.00 0.00 0.00 3.79
630 654 2.203070 ACGGGGCGATGCTGATTC 60.203 61.111 0.00 0.00 0.00 2.52
635 659 1.206072 GGCGATGCTGATTCGATGC 59.794 57.895 4.22 0.00 38.88 3.91
636 660 1.501337 GGCGATGCTGATTCGATGCA 61.501 55.000 0.00 0.00 38.88 3.96
637 661 0.305617 GCGATGCTGATTCGATGCAA 59.694 50.000 0.00 0.00 40.24 4.08
707 732 1.453155 ATCTGATCGGTTGTTGGCAC 58.547 50.000 0.42 0.00 0.00 5.01
727 752 4.704833 ACAGCGCCAGCCGTTCAT 62.705 61.111 2.29 0.00 46.67 2.57
729 754 2.672996 AGCGCCAGCCGTTCATTT 60.673 55.556 2.29 0.00 46.67 2.32
731 756 0.958382 AGCGCCAGCCGTTCATTTAA 60.958 50.000 2.29 0.00 46.67 1.52
875 906 3.612860 CGGTCGATGCTGTTATATAAGCC 59.387 47.826 4.36 0.00 38.71 4.35
893 924 3.110178 CCACGTTTCCCGCGTCTC 61.110 66.667 4.92 0.00 40.90 3.36
894 925 2.049433 CACGTTTCCCGCGTCTCT 60.049 61.111 4.92 0.00 40.90 3.10
895 926 1.210931 CACGTTTCCCGCGTCTCTA 59.789 57.895 4.92 0.00 40.90 2.43
896 927 0.797249 CACGTTTCCCGCGTCTCTAG 60.797 60.000 4.92 0.00 40.90 2.43
908 939 3.248841 CGCGTCTCTAGCTTCTTCTCATA 59.751 47.826 0.00 0.00 0.00 2.15
939 975 3.181462 ACGCAGCATCATATTTCCTCTGA 60.181 43.478 0.00 0.00 0.00 3.27
940 976 3.811497 CGCAGCATCATATTTCCTCTGAA 59.189 43.478 0.00 0.00 0.00 3.02
941 977 4.319333 CGCAGCATCATATTTCCTCTGAAC 60.319 45.833 0.00 0.00 0.00 3.18
942 978 4.820716 GCAGCATCATATTTCCTCTGAACT 59.179 41.667 0.00 0.00 0.00 3.01
963 1030 0.898320 AAGCTAGCGCCTGAGAGAAA 59.102 50.000 9.55 0.00 36.60 2.52
964 1031 0.174617 AGCTAGCGCCTGAGAGAAAC 59.825 55.000 9.55 0.00 36.60 2.78
984 1051 3.408634 ACCTTACGGTTCATCTTGGTTG 58.591 45.455 0.00 0.00 42.13 3.77
986 1053 3.558321 CCTTACGGTTCATCTTGGTTGGA 60.558 47.826 0.00 0.00 0.00 3.53
989 1056 1.665679 CGGTTCATCTTGGTTGGATCG 59.334 52.381 0.00 0.00 0.00 3.69
1030 1097 4.431131 CCGGTTCATGCTGGGCCT 62.431 66.667 4.53 0.00 0.00 5.19
1050 1117 2.031163 GTGGTGCTGCTCCTCGTT 59.969 61.111 20.19 0.00 0.00 3.85
1193 1260 5.461078 TCGGTAAGACTTTCAAGTTTCTTCG 59.539 40.000 0.00 0.00 39.88 3.79
1199 1266 6.038356 AGACTTTCAAGTTTCTTCGTTCGTA 58.962 36.000 0.00 0.00 39.88 3.43
1213 1280 5.239359 TCGTTCGTACTTACATACATGCT 57.761 39.130 0.00 0.00 0.00 3.79
1219 1286 8.649841 GTTCGTACTTACATACATGCTGTTAAA 58.350 33.333 6.81 0.00 0.00 1.52
1230 1301 4.726416 CATGCTGTTAAACATGTGACTCC 58.274 43.478 0.00 0.00 39.05 3.85
1232 1303 3.814842 TGCTGTTAAACATGTGACTCCTG 59.185 43.478 0.00 0.00 0.00 3.86
1283 1354 0.250553 TGTTCAACTACGCCAAGGGG 60.251 55.000 1.12 1.12 37.18 4.79
1538 1609 4.487412 CCGTACACGAGCCCGACC 62.487 72.222 2.76 0.00 43.02 4.79
1805 1887 2.124570 CCAGGATGAAGGCCGTGG 60.125 66.667 0.00 0.00 39.69 4.94
1874 1957 1.131504 TGTTCTTTGTTGTGGTCGTGC 59.868 47.619 0.00 0.00 0.00 5.34
2019 2495 2.224402 GGCATCTCCTCGCTCCTAAATT 60.224 50.000 0.00 0.00 0.00 1.82
2026 2502 2.874701 CCTCGCTCCTAAATTGGACATG 59.125 50.000 0.00 0.00 31.94 3.21
2050 2526 0.108329 CTGTCCGCGGACTGGTAAAT 60.108 55.000 46.72 0.00 44.80 1.40
2067 2543 2.100879 AATGTCCGCCTAGATCCGGC 62.101 60.000 12.45 12.45 44.01 6.13
2069 2545 4.220163 TCCGCCTAGATCCGGCCT 62.220 66.667 15.75 0.00 44.73 5.19
2110 2586 1.782044 CGCCCAATCACAACCAAAAG 58.218 50.000 0.00 0.00 0.00 2.27
2132 2608 4.884164 AGGAGCCAAGTATGCATAGTTTTC 59.116 41.667 21.67 17.99 0.00 2.29
2133 2609 4.640201 GGAGCCAAGTATGCATAGTTTTCA 59.360 41.667 21.67 0.00 0.00 2.69
2144 2620 4.020396 TGCATAGTTTTCACATGCCCAATT 60.020 37.500 0.00 0.00 43.51 2.32
2162 2638 6.625960 GCCCAATTACAAAAGAATCTCAGTCC 60.626 42.308 0.00 0.00 0.00 3.85
2250 2726 2.279784 CTCCTCGCCATCCGCTTC 60.280 66.667 0.00 0.00 36.73 3.86
2299 2775 1.448540 CTTCCGCGCCATCTTCAGT 60.449 57.895 0.00 0.00 0.00 3.41
2372 2851 1.588239 TGCATCCTCATCCAACTCCT 58.412 50.000 0.00 0.00 0.00 3.69
2373 2852 1.487976 TGCATCCTCATCCAACTCCTC 59.512 52.381 0.00 0.00 0.00 3.71
2375 2854 2.121948 CATCCTCATCCAACTCCTCCA 58.878 52.381 0.00 0.00 0.00 3.86
2376 2855 2.575921 TCCTCATCCAACTCCTCCAT 57.424 50.000 0.00 0.00 0.00 3.41
2377 2856 2.850833 TCCTCATCCAACTCCTCCATT 58.149 47.619 0.00 0.00 0.00 3.16
2409 2888 4.507710 CACATCTTTGAATCCTCCGAAGA 58.492 43.478 0.00 0.00 31.31 2.87
2440 2919 3.057174 TCTCAACCTTCTTCTCTTCGAGC 60.057 47.826 0.00 0.00 0.00 5.03
2465 2945 4.576463 TGGTCTTTTCTCTTCAAGCTTGAC 59.424 41.667 28.46 13.13 36.83 3.18
2547 3027 2.327343 GGAGCGCTTGACACATGCA 61.327 57.895 13.26 0.00 34.78 3.96
2586 3066 1.996798 TGTCCTCGAACCTCTCTGTT 58.003 50.000 0.00 0.00 0.00 3.16
2587 3067 1.887198 TGTCCTCGAACCTCTCTGTTC 59.113 52.381 0.00 0.00 40.96 3.18
2595 3075 2.022718 ACCTCTCTGTTCTCTTGGCT 57.977 50.000 0.00 0.00 0.00 4.75
2675 3156 2.185387 GGCTGGAGTGGTCCTTAACTA 58.815 52.381 0.00 0.00 44.30 2.24
2712 3193 7.253422 ACAAGCTATGTTATGTCTTGCAAATC 58.747 34.615 0.00 0.00 40.06 2.17
2715 3196 5.973565 GCTATGTTATGTCTTGCAAATCCAC 59.026 40.000 0.00 0.00 0.00 4.02
2717 3198 6.594788 ATGTTATGTCTTGCAAATCCACTT 57.405 33.333 0.00 0.00 0.00 3.16
2735 3216 5.722263 CCACTTGATGGCATTCAATAACAA 58.278 37.500 0.00 0.00 43.24 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.346281 GGATCATGTATACTTGCTTAGACGC 59.654 44.000 12.71 0.00 0.00 5.19
62 63 1.149148 GTTTCAAGGTGCCGAGACTC 58.851 55.000 0.00 0.00 0.00 3.36
70 71 0.305313 TTGCGTACGTTTCAAGGTGC 59.695 50.000 17.90 0.00 0.00 5.01
172 173 2.736682 CGACGGCGTTGTGGAATCC 61.737 63.158 16.19 0.00 0.00 3.01
259 264 7.624344 GCGGCTTCTTTTCACATGATATATACC 60.624 40.741 0.00 0.00 0.00 2.73
331 342 3.782046 AGATACGCATATATCAACCGGC 58.218 45.455 0.00 0.00 34.50 6.13
333 344 5.250235 AGGAGATACGCATATATCAACCG 57.750 43.478 0.00 0.00 36.38 4.44
334 345 6.183360 TGCTAGGAGATACGCATATATCAACC 60.183 42.308 0.00 3.30 34.50 3.77
335 346 6.796426 TGCTAGGAGATACGCATATATCAAC 58.204 40.000 0.00 0.00 34.50 3.18
368 379 4.201871 TGCACTTCACCTGTTCTTTTTACG 60.202 41.667 0.00 0.00 0.00 3.18
455 475 6.580416 GGACTAGACTACACGACTTTTTGTAC 59.420 42.308 0.00 0.00 0.00 2.90
458 478 5.770417 AGGACTAGACTACACGACTTTTTG 58.230 41.667 0.00 0.00 0.00 2.44
539 563 5.602628 ACCCTAGCTCGATCTTTTCATTAC 58.397 41.667 0.00 0.00 0.00 1.89
542 566 4.896482 ACTACCCTAGCTCGATCTTTTCAT 59.104 41.667 0.00 0.00 0.00 2.57
544 568 4.922471 ACTACCCTAGCTCGATCTTTTC 57.078 45.455 0.00 0.00 0.00 2.29
561 585 6.752351 TGATCAGCTCGTCTAATTTGAACTAC 59.248 38.462 0.00 0.00 0.00 2.73
562 586 6.752351 GTGATCAGCTCGTCTAATTTGAACTA 59.248 38.462 0.00 0.00 0.00 2.24
563 587 5.578727 GTGATCAGCTCGTCTAATTTGAACT 59.421 40.000 0.00 0.00 0.00 3.01
605 629 1.219522 GCATCGCCCCGTGTATGTAC 61.220 60.000 0.00 0.00 0.00 2.90
606 630 1.068417 GCATCGCCCCGTGTATGTA 59.932 57.895 0.00 0.00 0.00 2.29
607 631 2.203015 GCATCGCCCCGTGTATGT 60.203 61.111 0.00 0.00 0.00 2.29
608 632 2.108976 AGCATCGCCCCGTGTATG 59.891 61.111 0.00 0.00 0.00 2.39
614 638 3.341043 CGAATCAGCATCGCCCCG 61.341 66.667 0.00 0.00 33.07 5.73
618 642 0.305617 TTGCATCGAATCAGCATCGC 59.694 50.000 6.13 0.00 40.04 4.58
625 649 5.427378 TGAAAGGACTATTGCATCGAATCA 58.573 37.500 0.00 0.00 0.00 2.57
630 654 5.467735 TCATGATGAAAGGACTATTGCATCG 59.532 40.000 0.00 0.00 35.98 3.84
635 659 6.301486 TCCCATCATGATGAAAGGACTATTG 58.699 40.000 32.71 13.67 41.20 1.90
636 660 6.520021 TCCCATCATGATGAAAGGACTATT 57.480 37.500 32.71 0.00 41.20 1.73
637 661 6.126390 TGTTCCCATCATGATGAAAGGACTAT 60.126 38.462 32.71 0.00 41.20 2.12
674 699 3.058432 CGATCAGATTTCCATGATGGTGC 60.058 47.826 11.87 0.00 39.03 5.01
752 783 7.253422 CAACTTTACCTATGAGGAAATGCAAG 58.747 38.462 0.00 0.00 37.67 4.01
893 924 6.384258 TGCACTAGTATGAGAAGAAGCTAG 57.616 41.667 0.00 0.00 34.00 3.42
894 925 6.565234 GTTGCACTAGTATGAGAAGAAGCTA 58.435 40.000 0.00 0.00 0.00 3.32
895 926 5.415221 GTTGCACTAGTATGAGAAGAAGCT 58.585 41.667 0.00 0.00 0.00 3.74
896 927 4.266502 CGTTGCACTAGTATGAGAAGAAGC 59.733 45.833 0.00 0.00 0.00 3.86
908 939 0.320683 TGATGCTGCGTTGCACTAGT 60.321 50.000 6.62 0.00 46.33 2.57
939 975 1.825474 TCTCAGGCGCTAGCTTTAGTT 59.175 47.619 13.93 0.00 44.37 2.24
940 976 1.407258 CTCTCAGGCGCTAGCTTTAGT 59.593 52.381 13.93 0.00 44.37 2.24
941 977 1.678627 TCTCTCAGGCGCTAGCTTTAG 59.321 52.381 13.93 3.34 44.37 1.85
942 978 1.763968 TCTCTCAGGCGCTAGCTTTA 58.236 50.000 13.93 0.00 44.37 1.85
984 1051 1.932604 GCCATCGTGACTGATCGATCC 60.933 57.143 22.31 8.00 43.43 3.36
986 1053 1.035923 AGCCATCGTGACTGATCGAT 58.964 50.000 0.00 0.00 45.63 3.59
989 1056 1.576356 GGAAGCCATCGTGACTGATC 58.424 55.000 0.00 0.00 0.00 2.92
1030 1097 2.431683 GAGGAGCAGCACCACCAA 59.568 61.111 11.90 0.00 0.00 3.67
1182 1249 6.500775 TGTAAGTACGAACGAAGAAACTTG 57.499 37.500 0.14 0.00 0.00 3.16
1183 1250 7.862372 TGTATGTAAGTACGAACGAAGAAACTT 59.138 33.333 0.14 0.00 0.00 2.66
1184 1251 7.362662 TGTATGTAAGTACGAACGAAGAAACT 58.637 34.615 0.14 0.00 0.00 2.66
1188 1255 5.740569 GCATGTATGTAAGTACGAACGAAGA 59.259 40.000 0.14 0.00 0.00 2.87
1213 1280 4.133820 CCACAGGAGTCACATGTTTAACA 58.866 43.478 0.00 0.00 41.71 2.41
1219 1286 3.740115 GTTAACCACAGGAGTCACATGT 58.260 45.455 0.00 0.00 44.54 3.21
1229 1300 2.478894 GACACATGTCGTTAACCACAGG 59.521 50.000 15.03 15.03 35.12 4.00
1230 1301 3.788434 GACACATGTCGTTAACCACAG 57.212 47.619 11.70 6.70 35.12 3.66
1394 1465 4.002982 TGGTGCAGATAAAGTAGTGCTTG 58.997 43.478 0.00 0.00 37.52 4.01
1716 1787 1.079127 GAGCAAAGCTAGCCCACGA 60.079 57.895 12.13 0.00 39.88 4.35
1805 1887 9.080097 ACTCACAAGGTGACCTATATATAAGAC 57.920 37.037 3.68 0.00 37.67 3.01
1874 1957 3.065371 GGCAATTAATGGAACCTCGTCTG 59.935 47.826 0.00 0.00 0.00 3.51
2050 2526 3.224324 GCCGGATCTAGGCGGACA 61.224 66.667 5.05 0.00 45.58 4.02
2110 2586 4.640201 TGAAAACTATGCATACTTGGCTCC 59.360 41.667 1.16 0.00 0.00 4.70
2132 2608 6.400568 AGATTCTTTTGTAATTGGGCATGTG 58.599 36.000 0.00 0.00 0.00 3.21
2133 2609 6.211184 TGAGATTCTTTTGTAATTGGGCATGT 59.789 34.615 0.00 0.00 0.00 3.21
2144 2620 3.007506 TGCCGGACTGAGATTCTTTTGTA 59.992 43.478 5.05 0.00 0.00 2.41
2250 2726 2.286127 GAAGGAGGCGGTCGAGAAGG 62.286 65.000 0.00 0.00 0.00 3.46
2286 2762 0.659957 GGATCAACTGAAGATGGCGC 59.340 55.000 0.00 0.00 0.00 6.53
2291 2767 3.937706 CGCTTGAAGGATCAACTGAAGAT 59.062 43.478 0.00 0.00 40.59 2.40
2299 2775 3.818210 TGTTAAAGCGCTTGAAGGATCAA 59.182 39.130 25.80 5.15 43.18 2.57
2372 2851 4.387026 AGATGTGGACCTTGAAAATGGA 57.613 40.909 0.00 0.00 0.00 3.41
2373 2852 5.010922 TCAAAGATGTGGACCTTGAAAATGG 59.989 40.000 0.00 0.00 0.00 3.16
2375 2854 6.729690 TTCAAAGATGTGGACCTTGAAAAT 57.270 33.333 2.69 0.00 0.00 1.82
2376 2855 6.239289 GGATTCAAAGATGTGGACCTTGAAAA 60.239 38.462 8.03 0.00 0.00 2.29
2377 2856 5.243730 GGATTCAAAGATGTGGACCTTGAAA 59.756 40.000 8.03 0.00 0.00 2.69
2409 2888 3.719121 AGGTTGAGATCGCAGCCT 58.281 55.556 25.51 25.51 43.58 4.58
2440 2919 5.297776 TCAAGCTTGAAGAGAAAAGACCAAG 59.702 40.000 26.61 0.00 33.55 3.61
2483 2963 8.808529 AGAACGATAAGTTTAACATCTTGATCG 58.191 33.333 0.00 0.23 44.35 3.69
2547 3027 5.435291 GACATCTTGGTGAAGAATGAGGAT 58.565 41.667 0.00 0.00 41.64 3.24
2595 3075 4.392166 TAGTGAGGAGGGGCGGCA 62.392 66.667 12.47 0.00 0.00 5.69
2605 3085 6.927936 CCATCAAAGTACATGATCTAGTGAGG 59.072 42.308 10.29 6.48 35.38 3.86
2654 3134 0.035343 GTTAAGGACCACTCCAGCCC 60.035 60.000 0.00 0.00 39.39 5.19
2675 3156 2.656947 TAGCTTGTCACCTTTTGGCT 57.343 45.000 0.00 0.00 45.59 4.75
2715 3196 8.407832 TCTACATTGTTATTGAATGCCATCAAG 58.592 33.333 7.27 0.00 42.21 3.02
2717 3198 7.469043 GCTCTACATTGTTATTGAATGCCATCA 60.469 37.037 0.00 0.00 34.67 3.07
2726 3207 6.038603 GGCTTCATGCTCTACATTGTTATTGA 59.961 38.462 0.00 0.00 42.39 2.57
2735 3216 3.920231 TCAAGGCTTCATGCTCTACAT 57.080 42.857 0.00 0.00 42.39 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.