Multiple sequence alignment - TraesCS6D01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G294600 chr6D 100.000 4502 0 0 1 4502 405486445 405481944 0.000000e+00 8314.0
1 TraesCS6D01G294600 chr6D 84.370 595 33 11 1 569 467099196 467098636 3.080000e-146 529.0
2 TraesCS6D01G294600 chr6A 94.238 3992 126 43 567 4502 551867720 551863777 0.000000e+00 6002.0
3 TraesCS6D01G294600 chr6B 92.958 3834 155 50 703 4502 609383196 609379444 0.000000e+00 5478.0
4 TraesCS6D01G294600 chr7D 77.358 1378 279 26 2140 3503 130114674 130113316 0.000000e+00 785.0
5 TraesCS6D01G294600 chr7D 88.793 464 50 2 1225 1687 130116074 130115612 6.540000e-158 568.0
6 TraesCS6D01G294600 chr7D 96.875 32 1 0 543 574 204112371 204112340 2.000000e-03 54.7
7 TraesCS6D01G294600 chr7B 77.342 1377 278 24 2140 3501 91662277 91660920 0.000000e+00 784.0
8 TraesCS6D01G294600 chr7B 86.245 538 68 5 1153 1686 91663719 91663184 3.020000e-161 579.0
9 TraesCS6D01G294600 chr7A 76.957 1380 284 23 2140 3503 129260938 129259577 0.000000e+00 756.0
10 TraesCS6D01G294600 chr7A 87.146 529 63 4 1163 1687 129262590 129262063 3.000000e-166 595.0
11 TraesCS6D01G294600 chr7A 96.875 32 1 0 543 574 706302051 706302082 2.000000e-03 54.7
12 TraesCS6D01G294600 chr3A 85.619 598 51 16 1 571 372190174 372189585 3.000000e-166 595.0
13 TraesCS6D01G294600 chr3A 85.542 83 11 1 488 569 641335861 641335779 8.020000e-13 86.1
14 TraesCS6D01G294600 chr5A 91.304 299 22 3 1 296 550719466 550719763 5.420000e-109 405.0
15 TraesCS6D01G294600 chr5B 93.585 265 13 2 1 261 530262727 530262991 4.220000e-105 392.0
16 TraesCS6D01G294600 chr5D 94.118 221 13 0 1 221 436258150 436258370 2.010000e-88 337.0
17 TraesCS6D01G294600 chr4B 92.941 85 6 0 436 520 142710602 142710686 1.700000e-24 124.0
18 TraesCS6D01G294600 chr4A 88.235 102 12 0 419 520 455302501 455302400 6.120000e-24 122.0
19 TraesCS6D01G294600 chr4A 100.000 28 0 0 543 570 606408008 606408035 8.000000e-03 52.8
20 TraesCS6D01G294600 chr4D 87.671 73 7 1 494 566 439179759 439179829 2.890000e-12 84.2
21 TraesCS6D01G294600 chr1A 87.500 64 7 1 505 567 21501450 21501513 6.250000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G294600 chr6D 405481944 405486445 4501 True 8314.0 8314 100.0000 1 4502 1 chr6D.!!$R1 4501
1 TraesCS6D01G294600 chr6D 467098636 467099196 560 True 529.0 529 84.3700 1 569 1 chr6D.!!$R2 568
2 TraesCS6D01G294600 chr6A 551863777 551867720 3943 True 6002.0 6002 94.2380 567 4502 1 chr6A.!!$R1 3935
3 TraesCS6D01G294600 chr6B 609379444 609383196 3752 True 5478.0 5478 92.9580 703 4502 1 chr6B.!!$R1 3799
4 TraesCS6D01G294600 chr7D 130113316 130116074 2758 True 676.5 785 83.0755 1225 3503 2 chr7D.!!$R2 2278
5 TraesCS6D01G294600 chr7B 91660920 91663719 2799 True 681.5 784 81.7935 1153 3501 2 chr7B.!!$R1 2348
6 TraesCS6D01G294600 chr7A 129259577 129262590 3013 True 675.5 756 82.0515 1163 3503 2 chr7A.!!$R1 2340
7 TraesCS6D01G294600 chr3A 372189585 372190174 589 True 595.0 595 85.6190 1 571 1 chr3A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 723 0.039798 GTATAATCGGCCGCACTCGA 60.040 55.0 23.51 1.11 39.79 4.04 F
1797 2266 0.182775 TCAGCTGCATCATGCCATCT 59.817 50.0 9.47 0.00 44.23 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 3183 0.326264 ATCCAGTGCCAAGGTGAGTC 59.674 55.000 0.0 0.0 0.0 3.36 R
3690 4530 2.582687 GTACAGGTTCAAGTCTCGACG 58.417 52.381 0.0 0.0 36.2 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.872881 GTGCACCTCACGTACGTTGT 60.873 55.000 20.23 13.39 35.76 3.32
168 169 3.393970 CCAAGAGCCTCCTCGCCA 61.394 66.667 0.00 0.00 43.05 5.69
171 172 4.775977 AGAGCCTCCTCGCCAGCT 62.776 66.667 0.00 0.00 43.05 4.24
186 187 1.002379 AGCTAGGTCCTCGACGTGT 60.002 57.895 0.00 0.00 32.77 4.49
215 216 2.071540 GGTAGTACCGCCACAAAGTTC 58.928 52.381 2.90 0.00 0.00 3.01
221 222 1.968493 ACCGCCACAAAGTTCTCTCTA 59.032 47.619 0.00 0.00 0.00 2.43
308 309 2.275134 TTTTGTGCTCCATCTCAGCA 57.725 45.000 0.00 0.00 44.80 4.41
331 358 4.521062 GGAGCTCGCGTCCTGCAT 62.521 66.667 5.77 0.00 46.97 3.96
417 444 0.181114 TGCTTGACTGGTGTTGCTCT 59.819 50.000 0.00 0.00 0.00 4.09
422 449 0.106708 GACTGGTGTTGCTCTGTCCA 59.893 55.000 0.00 0.00 0.00 4.02
423 450 0.179045 ACTGGTGTTGCTCTGTCCAC 60.179 55.000 0.00 0.00 0.00 4.02
506 533 2.806237 CTAGGCGGACGGAAGACC 59.194 66.667 0.00 0.00 42.66 3.85
544 572 0.589223 GCAAATCCGTGTCCGTTTGA 59.411 50.000 0.00 0.00 34.02 2.69
578 606 4.141711 TGAAGTTGCTCTAACACCTGTTCT 60.142 41.667 0.00 0.00 41.88 3.01
584 612 5.676552 TGCTCTAACACCTGTTCTAACAAA 58.323 37.500 0.00 0.00 38.66 2.83
586 614 5.049612 GCTCTAACACCTGTTCTAACAAACC 60.050 44.000 0.00 0.00 38.66 3.27
587 615 6.243216 TCTAACACCTGTTCTAACAAACCT 57.757 37.500 0.00 0.00 38.66 3.50
588 616 6.053005 TCTAACACCTGTTCTAACAAACCTG 58.947 40.000 0.00 0.00 38.66 4.00
616 644 6.151817 GCATCAGGAAAGTTACTGGAAAAGAT 59.848 38.462 3.44 0.00 39.66 2.40
633 661 8.626526 TGGAAAAGATTAAACTTGTGGAACTAC 58.373 33.333 0.00 0.00 38.04 2.73
634 662 8.847196 GGAAAAGATTAAACTTGTGGAACTACT 58.153 33.333 0.00 0.00 38.04 2.57
637 665 7.981102 AGATTAAACTTGTGGAACTACTTCC 57.019 36.000 0.00 0.00 45.89 3.46
653 681 9.408069 GAACTACTTCCATACCACTATATTTCG 57.592 37.037 0.00 0.00 0.00 3.46
660 688 7.658261 TCCATACCACTATATTTCGAGAACAG 58.342 38.462 0.00 0.00 0.00 3.16
667 695 2.474410 ATTTCGAGAACAGACACCCC 57.526 50.000 0.00 0.00 0.00 4.95
692 720 0.601558 ATCGTATAATCGGCCGCACT 59.398 50.000 23.51 9.66 0.00 4.40
695 723 0.039798 GTATAATCGGCCGCACTCGA 60.040 55.000 23.51 1.11 39.79 4.04
776 804 1.261619 GTACGTACATACCCGTCCTCG 59.738 57.143 20.67 0.00 38.43 4.63
936 981 0.674895 ATTGCTTCGCTCAGTCCACC 60.675 55.000 0.00 0.00 0.00 4.61
937 982 1.758440 TTGCTTCGCTCAGTCCACCT 61.758 55.000 0.00 0.00 0.00 4.00
938 983 1.446966 GCTTCGCTCAGTCCACCTC 60.447 63.158 0.00 0.00 0.00 3.85
939 984 1.153939 CTTCGCTCAGTCCACCTCG 60.154 63.158 0.00 0.00 0.00 4.63
993 1038 2.282180 TTTTCACCTCCAGCGCCC 60.282 61.111 2.29 0.00 0.00 6.13
1196 1256 4.247380 GGATCTGAGGGGCTGCGG 62.247 72.222 0.00 0.00 0.00 5.69
1704 1772 2.350833 CGCTTCCGTTTCTCGTCTC 58.649 57.895 0.00 0.00 37.94 3.36
1709 1777 1.446272 CCGTTTCTCGTCTCTGGGC 60.446 63.158 0.00 0.00 37.94 5.36
1796 2265 0.593618 CTCAGCTGCATCATGCCATC 59.406 55.000 9.47 0.00 44.23 3.51
1797 2266 0.182775 TCAGCTGCATCATGCCATCT 59.817 50.000 9.47 0.00 44.23 2.90
1858 2545 0.677414 TCGGTTTTATTGGTCCGGCC 60.677 55.000 0.00 1.41 42.71 6.13
2015 2736 2.993899 ACTCGAATCTTTGCCGTTAGTG 59.006 45.455 0.00 0.00 0.00 2.74
2017 2738 2.073816 CGAATCTTTGCCGTTAGTGGT 58.926 47.619 0.00 0.00 0.00 4.16
2060 2782 9.868277 TTTTCTTGTTATGTTATGGCAAATAGG 57.132 29.630 0.00 0.00 0.00 2.57
2110 2832 8.998277 ATGATATAGTAGTACTCAGGTTGTGT 57.002 34.615 5.96 0.00 0.00 3.72
2126 2911 6.018751 CAGGTTGTGTTATCTTATGGATCGTG 60.019 42.308 0.00 0.00 35.98 4.35
2127 2912 6.046593 GGTTGTGTTATCTTATGGATCGTGA 58.953 40.000 0.00 0.00 35.98 4.35
2154 2943 6.903883 TTATGTTTTAGGCATCTTCGAGTC 57.096 37.500 0.00 0.00 0.00 3.36
2231 3020 2.149578 CTCCAAGTTTCCAGAGTGCAG 58.850 52.381 0.00 0.00 0.00 4.41
2253 3042 1.272781 CGTCGCTGGAATCTCTTGTC 58.727 55.000 0.00 0.00 0.00 3.18
2322 3111 2.813042 GCACGCTCACCAGCTCTC 60.813 66.667 0.00 0.00 44.40 3.20
2349 3138 1.060937 GCGCGTGAATGACCATGTC 59.939 57.895 8.43 0.00 0.00 3.06
2562 3351 4.298332 CAATCTACCAAGTTTGTGCCAAC 58.702 43.478 0.00 0.00 30.79 3.77
2901 3732 1.094073 CAATCTCAGAAGGCTGCCGG 61.094 60.000 13.96 0.00 42.01 6.13
3083 3914 3.727079 GCGATTGTGATGAACTGCAAGAG 60.727 47.826 0.00 0.00 37.43 2.85
3142 3973 1.745087 AGGCGTTTGCATACATTGGAG 59.255 47.619 8.06 0.00 45.35 3.86
3396 4227 2.749621 GCCTAATCTGGTGGTTGAAGTG 59.250 50.000 0.00 0.00 0.00 3.16
3555 4395 6.035758 GTCATGTTTGTTCTACTATTCCCGAC 59.964 42.308 0.00 0.00 0.00 4.79
3610 4450 1.684049 CAGAGAGGAAGCTCCCCGT 60.684 63.158 0.00 0.00 37.19 5.28
3660 4500 8.827177 ATGAATGCATCATTTAATTAAGCAGG 57.173 30.769 0.00 0.00 46.85 4.85
3690 4530 3.881937 ATTCTTTTCTGGGCTGATTGC 57.118 42.857 0.00 0.00 41.94 3.56
3830 4686 3.323979 ACCATAGTTGAGTTGTCGGAACT 59.676 43.478 0.92 0.92 33.32 3.01
3874 4730 2.427506 GCTGAAGGTCGACTCCAATTT 58.572 47.619 16.46 0.99 0.00 1.82
3962 4820 5.186603 ACTGTTCAATCTATCTGCTCAGACA 59.813 40.000 1.15 0.00 40.75 3.41
3976 4834 1.879380 TCAGACAAAGGAACGGCATTG 59.121 47.619 0.00 0.00 0.00 2.82
3991 4849 3.709987 GGCATTGTCTATGTTGGAATGC 58.290 45.455 0.00 0.00 45.29 3.56
4104 4964 8.547481 TTGTAGATCAAGGTAGACCAATATCA 57.453 34.615 0.66 0.00 38.89 2.15
4170 5030 8.320396 AGATATTGGATGATGAAATTCAGTCG 57.680 34.615 1.10 0.00 0.00 4.18
4191 5051 3.610585 CGGCATCAATTTGTTACCACGTT 60.611 43.478 0.00 0.00 0.00 3.99
4192 5052 3.917985 GGCATCAATTTGTTACCACGTTC 59.082 43.478 0.00 0.00 0.00 3.95
4193 5053 4.320935 GGCATCAATTTGTTACCACGTTCT 60.321 41.667 0.00 0.00 0.00 3.01
4194 5054 5.106475 GGCATCAATTTGTTACCACGTTCTA 60.106 40.000 0.00 0.00 0.00 2.10
4195 5055 5.793457 GCATCAATTTGTTACCACGTTCTAC 59.207 40.000 0.00 0.00 0.00 2.59
4199 5059 7.660112 TCAATTTGTTACCACGTTCTACTCTA 58.340 34.615 0.00 0.00 0.00 2.43
4203 5063 6.246420 TGTTACCACGTTCTACTCTACTTC 57.754 41.667 0.00 0.00 0.00 3.01
4225 5085 2.975732 TTGTTGCCTGTTCATTTGCA 57.024 40.000 0.00 0.00 0.00 4.08
4226 5086 2.222007 TGTTGCCTGTTCATTTGCAC 57.778 45.000 0.00 0.00 32.63 4.57
4227 5087 1.202510 TGTTGCCTGTTCATTTGCACC 60.203 47.619 0.00 0.00 32.63 5.01
4240 5103 1.107945 TTGCACCCATGATCATGCTG 58.892 50.000 27.24 23.04 38.90 4.41
4243 5106 0.952280 CACCCATGATCATGCTGCTC 59.048 55.000 27.24 0.00 37.49 4.26
4428 5292 3.560025 GCCTTTTCATCCTTCTCCTGTGA 60.560 47.826 0.00 0.00 0.00 3.58
4490 5354 1.968540 GAGCCTGCACCTTCCACAC 60.969 63.158 0.00 0.00 0.00 3.82
4499 5363 1.371183 CCTTCCACACGGCAAGAGA 59.629 57.895 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.850640 CACAACGTACGTGAGGTGC 59.149 57.895 23.57 0.00 36.43 5.01
85 86 1.076559 TACTCCTCCGCAATCCCGA 60.077 57.895 0.00 0.00 0.00 5.14
168 169 1.002379 ACACGTCGAGGACCTAGCT 60.002 57.895 12.85 0.00 0.00 3.32
186 187 1.522355 CGGTACTACCTCGGAGCGA 60.522 63.158 0.00 0.00 35.66 4.93
215 216 7.625185 GCAGGTTAGCAACAAGAAAATAGAGAG 60.625 40.741 0.00 0.00 0.00 3.20
221 222 6.840780 ATAGCAGGTTAGCAACAAGAAAAT 57.159 33.333 0.00 0.00 36.85 1.82
417 444 3.604129 ATGCGGACATGCGTGGACA 62.604 57.895 11.36 2.98 37.81 4.02
422 449 1.209898 CACAAATGCGGACATGCGT 59.790 52.632 0.00 0.00 36.36 5.24
423 450 0.794229 GACACAAATGCGGACATGCG 60.794 55.000 0.00 0.00 36.36 4.73
492 519 3.540367 TTTGGGTCTTCCGTCCGCC 62.540 63.158 0.00 0.00 38.76 6.13
500 527 3.786516 TTTTTGTCCGTTTGGGTCTTC 57.213 42.857 0.00 0.00 37.00 2.87
522 550 1.234615 AACGGACACGGATTTGCCTG 61.235 55.000 0.00 0.00 46.48 4.85
524 552 0.386731 CAAACGGACACGGATTTGCC 60.387 55.000 0.00 0.00 46.48 4.52
525 553 0.589223 TCAAACGGACACGGATTTGC 59.411 50.000 0.00 0.00 46.48 3.68
526 554 1.871039 ACTCAAACGGACACGGATTTG 59.129 47.619 0.00 0.00 46.48 2.32
544 572 1.244019 GCAACTTCAATGGGGCGACT 61.244 55.000 0.00 0.00 0.00 4.18
578 606 1.164411 CTGATGCGGCAGGTTTGTTA 58.836 50.000 9.25 0.00 32.26 2.41
586 614 1.398390 GTAACTTTCCTGATGCGGCAG 59.602 52.381 9.25 0.00 35.66 4.85
587 615 1.003118 AGTAACTTTCCTGATGCGGCA 59.997 47.619 4.58 4.58 0.00 5.69
588 616 1.398390 CAGTAACTTTCCTGATGCGGC 59.602 52.381 0.00 0.00 0.00 6.53
633 661 8.141909 TGTTCTCGAAATATAGTGGTATGGAAG 58.858 37.037 0.00 0.00 0.00 3.46
634 662 8.014070 TGTTCTCGAAATATAGTGGTATGGAA 57.986 34.615 0.00 0.00 0.00 3.53
635 663 7.504574 TCTGTTCTCGAAATATAGTGGTATGGA 59.495 37.037 0.00 0.00 0.00 3.41
636 664 7.595502 GTCTGTTCTCGAAATATAGTGGTATGG 59.404 40.741 0.00 0.00 0.00 2.74
637 665 8.135529 TGTCTGTTCTCGAAATATAGTGGTATG 58.864 37.037 0.00 0.00 0.00 2.39
638 666 8.136165 GTGTCTGTTCTCGAAATATAGTGGTAT 58.864 37.037 0.00 0.00 0.00 2.73
639 667 7.415989 GGTGTCTGTTCTCGAAATATAGTGGTA 60.416 40.741 0.00 0.00 0.00 3.25
640 668 6.331061 GTGTCTGTTCTCGAAATATAGTGGT 58.669 40.000 0.00 0.00 0.00 4.16
641 669 5.749109 GGTGTCTGTTCTCGAAATATAGTGG 59.251 44.000 0.00 0.00 0.00 4.00
642 670 5.749109 GGGTGTCTGTTCTCGAAATATAGTG 59.251 44.000 0.00 0.00 0.00 2.74
643 671 5.163437 GGGGTGTCTGTTCTCGAAATATAGT 60.163 44.000 0.00 0.00 0.00 2.12
644 672 5.290386 GGGGTGTCTGTTCTCGAAATATAG 58.710 45.833 0.00 0.00 0.00 1.31
645 673 4.202080 CGGGGTGTCTGTTCTCGAAATATA 60.202 45.833 0.00 0.00 0.00 0.86
646 674 3.430374 CGGGGTGTCTGTTCTCGAAATAT 60.430 47.826 0.00 0.00 0.00 1.28
653 681 0.741221 GCATCGGGGTGTCTGTTCTC 60.741 60.000 0.00 0.00 0.00 2.87
676 704 0.039798 TCGAGTGCGGCCGATTATAC 60.040 55.000 33.48 18.14 38.28 1.47
692 720 0.036732 AGAAACATGGCCTGCTTCGA 59.963 50.000 3.32 0.00 35.52 3.71
695 723 1.260544 GGAAGAAACATGGCCTGCTT 58.739 50.000 3.32 0.00 0.00 3.91
828 859 3.405093 GATGGGGAGCGGTGATGCA 62.405 63.158 0.00 0.00 37.31 3.96
936 981 4.605967 GAGGAGCGAGCGAGCGAG 62.606 72.222 1.41 0.00 43.00 5.03
938 983 4.903355 CTGAGGAGCGAGCGAGCG 62.903 72.222 0.00 0.00 43.00 5.03
939 984 2.731587 GATCTGAGGAGCGAGCGAGC 62.732 65.000 0.00 0.00 37.41 5.03
993 1038 2.887568 GGAGCGCTCATGTGACGG 60.888 66.667 36.27 0.00 0.00 4.79
1350 1413 2.103143 CCGATGAAGAGCTCGCGT 59.897 61.111 8.37 6.05 33.63 6.01
1455 1518 2.435059 GGCACGAGGCTGAAGTCC 60.435 66.667 0.00 0.00 44.01 3.85
1693 1761 1.066858 TGATGCCCAGAGACGAGAAAC 60.067 52.381 0.00 0.00 0.00 2.78
1704 1772 1.593006 GATACGTTCGTTGATGCCCAG 59.407 52.381 2.62 0.00 0.00 4.45
1709 1777 4.584029 AAAGCTGATACGTTCGTTGATG 57.416 40.909 2.62 0.00 0.00 3.07
1796 2265 4.028383 CGTGCACATTAAATAAAGCGGAG 58.972 43.478 18.64 0.00 0.00 4.63
1797 2266 3.729462 GCGTGCACATTAAATAAAGCGGA 60.729 43.478 18.64 0.00 0.00 5.54
1858 2545 2.172082 TCAGATTCTGATCCAGGGCAAG 59.828 50.000 12.38 0.00 35.39 4.01
1887 2574 3.792956 CAGCACGGCAATAAAAAGCTATG 59.207 43.478 0.00 0.00 0.00 2.23
2015 2736 6.956047 AGAAAACGATCAAAAGTTGAGTACC 58.044 36.000 0.00 0.00 43.98 3.34
2017 2738 7.981142 ACAAGAAAACGATCAAAAGTTGAGTA 58.019 30.769 0.00 0.00 43.98 2.59
2060 2782 6.729187 AGTTTGAGACATTTGTTTGCTAGAC 58.271 36.000 0.00 0.00 0.00 2.59
2103 2825 6.018994 GTCACGATCCATAAGATAACACAACC 60.019 42.308 0.00 0.00 34.42 3.77
2106 2828 6.215495 TGTCACGATCCATAAGATAACACA 57.785 37.500 0.00 0.00 34.42 3.72
2107 2829 7.715265 AATGTCACGATCCATAAGATAACAC 57.285 36.000 0.00 0.00 34.42 3.32
2108 2830 9.996554 ATAAATGTCACGATCCATAAGATAACA 57.003 29.630 0.00 0.00 34.42 2.41
2110 2832 9.996554 ACATAAATGTCACGATCCATAAGATAA 57.003 29.630 0.00 0.00 35.87 1.75
2126 2911 7.693952 TCGAAGATGCCTAAAACATAAATGTC 58.306 34.615 0.00 0.00 40.80 3.06
2127 2912 7.336931 ACTCGAAGATGCCTAAAACATAAATGT 59.663 33.333 0.00 0.00 38.38 2.71
2135 2920 3.619038 CAGGACTCGAAGATGCCTAAAAC 59.381 47.826 0.00 0.00 37.78 2.43
2154 2943 6.709846 GGAAATAATCTTCAGTCAGATCCAGG 59.290 42.308 0.00 0.00 31.87 4.45
2231 3020 0.737715 AAGAGATTCCAGCGACGTGC 60.738 55.000 0.00 0.00 46.98 5.34
2247 3036 6.260050 GGACACTAACACAATCAAAGACAAGA 59.740 38.462 0.00 0.00 0.00 3.02
2349 3138 0.660005 GACGCAGCTGCTCTATCGAG 60.660 60.000 34.22 19.26 40.35 4.04
2394 3183 0.326264 ATCCAGTGCCAAGGTGAGTC 59.674 55.000 0.00 0.00 0.00 3.36
2445 3234 1.413382 CGAGCTCAGACACAGACAAC 58.587 55.000 15.40 0.00 0.00 3.32
2562 3351 4.593956 AGCTAAAATTGAGGGAAGTGAGG 58.406 43.478 0.00 0.00 0.00 3.86
2901 3732 9.339492 CAAAAGTAGAGAATTGATTCAAGCTTC 57.661 33.333 5.21 5.14 39.23 3.86
3142 3973 4.995487 AGTCTTTATGAGTTTTCCGTGTCC 59.005 41.667 0.00 0.00 0.00 4.02
3396 4227 6.343703 CATTTCCCCTTCATTTTCCTTCATC 58.656 40.000 0.00 0.00 0.00 2.92
3555 4395 4.218200 TGAACAGGAATACAACAGCAATGG 59.782 41.667 0.00 0.00 0.00 3.16
3610 4450 4.423913 TCCCCACAATTCAAAATCATCCA 58.576 39.130 0.00 0.00 0.00 3.41
3660 4500 5.052481 GCCCAGAAAAGAATAATTGATGGC 58.948 41.667 0.00 0.00 0.00 4.40
3690 4530 2.582687 GTACAGGTTCAAGTCTCGACG 58.417 52.381 0.00 0.00 36.20 5.12
3830 4686 5.587443 CCATTCTCTGTGCAATCACTAATCA 59.413 40.000 0.00 0.00 43.49 2.57
3851 4707 0.904865 TGGAGTCGACCTTCAGCCAT 60.905 55.000 13.01 0.00 0.00 4.40
3874 4730 2.806434 ACCATGTAAAATCTGCTGCCA 58.194 42.857 0.00 0.00 0.00 4.92
3962 4820 3.686016 ACATAGACAATGCCGTTCCTTT 58.314 40.909 0.00 0.00 39.39 3.11
4014 4872 9.654663 ATTTATCGTAGCTGGGATAATCTAAAC 57.345 33.333 17.02 0.00 35.65 2.01
4090 4950 6.318900 CCAGGAAAAGTTGATATTGGTCTACC 59.681 42.308 0.00 0.00 0.00 3.18
4099 4959 5.476945 GGTTGTGACCAGGAAAAGTTGATAT 59.523 40.000 0.00 0.00 45.77 1.63
4191 5051 4.838986 AGGCAACAAAGGAAGTAGAGTAGA 59.161 41.667 0.00 0.00 41.41 2.59
4192 5052 4.932200 CAGGCAACAAAGGAAGTAGAGTAG 59.068 45.833 0.00 0.00 41.41 2.57
4193 5053 4.347000 ACAGGCAACAAAGGAAGTAGAGTA 59.653 41.667 0.00 0.00 41.41 2.59
4194 5054 3.136626 ACAGGCAACAAAGGAAGTAGAGT 59.863 43.478 0.00 0.00 41.41 3.24
4195 5055 3.744660 ACAGGCAACAAAGGAAGTAGAG 58.255 45.455 0.00 0.00 41.41 2.43
4199 5059 2.733956 TGAACAGGCAACAAAGGAAGT 58.266 42.857 0.00 0.00 41.41 3.01
4203 5063 2.545106 GCAAATGAACAGGCAACAAAGG 59.455 45.455 0.00 0.00 41.41 3.11
4240 5103 4.057406 ACAGAGCAGTCATAATCAGAGC 57.943 45.455 0.00 0.00 0.00 4.09
4243 5106 4.190001 AGCAACAGAGCAGTCATAATCAG 58.810 43.478 0.00 0.00 36.85 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.