Multiple sequence alignment - TraesCS6D01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G294300 chr6D 100.000 5163 0 0 1 5163 405112429 405117591 0.000000e+00 9535.0
1 TraesCS6D01G294300 chr6B 98.424 4061 54 4 1110 5163 609068452 609072509 0.000000e+00 7136.0
2 TraesCS6D01G294300 chr6B 87.207 641 25 18 501 1112 609067644 609068256 0.000000e+00 676.0
3 TraesCS6D01G294300 chr6B 76.510 298 60 7 4454 4747 684933800 684933509 2.490000e-33 154.0
4 TraesCS6D01G294300 chr6A 95.471 2826 97 11 2349 5163 551650606 551653411 0.000000e+00 4481.0
5 TraesCS6D01G294300 chr6A 90.427 1264 85 14 1110 2350 551649174 551650424 0.000000e+00 1631.0
6 TraesCS6D01G294300 chr6A 86.035 401 25 8 725 1112 551648600 551648982 8.050000e-108 401.0
7 TraesCS6D01G294300 chr6A 76.622 740 115 32 4454 5163 596584611 596583900 6.360000e-94 355.0
8 TraesCS6D01G294300 chr6A 82.203 236 33 6 453 680 551648360 551648594 1.470000e-45 195.0
9 TraesCS6D01G294300 chr3D 83.648 159 25 1 1462 1619 439419727 439419569 1.160000e-31 148.0
10 TraesCS6D01G294300 chr7B 81.761 159 28 1 1462 1619 98985856 98985698 1.170000e-26 132.0
11 TraesCS6D01G294300 chr5B 81.761 159 28 1 1462 1619 439442838 439442680 1.170000e-26 132.0
12 TraesCS6D01G294300 chr1A 92.857 42 3 0 1578 1619 523123030 523122989 1.550000e-05 62.1
13 TraesCS6D01G294300 chr1A 92.857 42 3 0 1578 1619 523124415 523124374 1.550000e-05 62.1
14 TraesCS6D01G294300 chr1A 92.857 42 3 0 1578 1619 525005780 525005821 1.550000e-05 62.1
15 TraesCS6D01G294300 chr1A 94.595 37 2 0 1583 1619 523122009 523121973 2.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G294300 chr6D 405112429 405117591 5162 False 9535 9535 100.0000 1 5163 1 chr6D.!!$F1 5162
1 TraesCS6D01G294300 chr6B 609067644 609072509 4865 False 3906 7136 92.8155 501 5163 2 chr6B.!!$F1 4662
2 TraesCS6D01G294300 chr6A 551648360 551653411 5051 False 1677 4481 88.5340 453 5163 4 chr6A.!!$F1 4710
3 TraesCS6D01G294300 chr6A 596583900 596584611 711 True 355 355 76.6220 4454 5163 1 chr6A.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.031994 GCCCACGCATCAAGTTTTGT 59.968 50.000 0.0 0.0 34.03 2.83 F
338 339 0.101219 CGCATCAGATCACTCCGTCA 59.899 55.000 0.0 0.0 0.00 4.35 F
399 400 0.389426 TCTTTCTACTTGACGCCGCC 60.389 55.000 0.0 0.0 0.00 6.13 F
455 456 0.913451 ACTCTGCCATCTGCTTCCCT 60.913 55.000 0.0 0.0 42.00 4.20 F
479 481 0.967380 CTGCCGCCTCAAAATCCCTT 60.967 55.000 0.0 0.0 0.00 3.95 F
493 495 1.162951 TCCCTTCTCTTCCCCTCCCT 61.163 60.000 0.0 0.0 0.00 4.20 F
495 497 1.224381 CCCTTCTCTTCCCCTCCCTAT 59.776 57.143 0.0 0.0 0.00 2.57 F
2185 2447 1.402968 CATGGTTCATTGGAAGGAGCG 59.597 52.381 0.0 0.0 32.62 5.03 F
4048 4496 2.067013 GCCGAAAAGGTCTGTCTACAC 58.933 52.381 0.0 0.0 43.70 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 1357 1.818674 GGTTTATGTGAGCCAAGGGTG 59.181 52.381 0.00 0.0 0.00 4.61 R
1693 1931 1.918262 AGATGAGAAACATGGGCCAGA 59.082 47.619 13.78 0.0 39.56 3.86 R
2170 2417 2.026356 TCAATCCGCTCCTTCCAATGAA 60.026 45.455 0.00 0.0 0.00 2.57 R
2434 2882 6.695245 CAAACCAAAACTTTCTTCGATGTTG 58.305 36.000 0.00 0.0 0.00 3.33 R
2704 3152 3.758554 GCATACCACTTTCACTGTCCAAT 59.241 43.478 0.00 0.0 0.00 3.16 R
2789 3237 3.290710 ACAGAAGCATTGGTGAAACAGT 58.709 40.909 0.00 0.0 39.98 3.55 R
3010 3458 3.443099 GCTTTTGCAAAGTTCTCTGGT 57.557 42.857 12.41 0.0 46.58 4.00 R
4144 4592 0.249676 CTCACTGCTCAGCACCATCT 59.750 55.000 0.00 0.0 33.79 2.90 R
4929 5405 1.642037 CCGAGCAACACAGCATCCTG 61.642 60.000 0.00 0.0 44.80 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.953821 CGCCCACGCATCAAGTTT 59.046 55.556 0.00 0.00 34.03 2.66
38 39 1.285641 CGCCCACGCATCAAGTTTT 59.714 52.632 0.00 0.00 34.03 2.43
39 40 1.003262 CGCCCACGCATCAAGTTTTG 61.003 55.000 0.00 0.00 34.03 2.44
40 41 0.031994 GCCCACGCATCAAGTTTTGT 59.968 50.000 0.00 0.00 34.03 2.83
41 42 1.537990 GCCCACGCATCAAGTTTTGTT 60.538 47.619 0.00 0.00 34.03 2.83
42 43 2.126467 CCCACGCATCAAGTTTTGTTG 58.874 47.619 0.00 0.00 34.33 3.33
49 50 3.708890 CATCAAGTTTTGTTGCTGCTGA 58.291 40.909 0.00 0.00 0.00 4.26
50 51 4.304110 CATCAAGTTTTGTTGCTGCTGAT 58.696 39.130 0.00 0.00 0.00 2.90
51 52 3.968649 TCAAGTTTTGTTGCTGCTGATC 58.031 40.909 0.00 0.00 0.00 2.92
52 53 3.054878 CAAGTTTTGTTGCTGCTGATCC 58.945 45.455 0.00 0.00 0.00 3.36
53 54 1.615392 AGTTTTGTTGCTGCTGATCCC 59.385 47.619 0.00 0.00 0.00 3.85
54 55 1.340889 GTTTTGTTGCTGCTGATCCCA 59.659 47.619 0.00 0.00 0.00 4.37
55 56 0.961019 TTTGTTGCTGCTGATCCCAC 59.039 50.000 0.00 0.00 0.00 4.61
56 57 0.178995 TTGTTGCTGCTGATCCCACA 60.179 50.000 0.00 0.00 0.00 4.17
57 58 0.890542 TGTTGCTGCTGATCCCACAC 60.891 55.000 0.00 0.00 0.00 3.82
58 59 1.303561 TTGCTGCTGATCCCACACC 60.304 57.895 0.00 0.00 0.00 4.16
59 60 2.066700 TTGCTGCTGATCCCACACCA 62.067 55.000 0.00 0.00 0.00 4.17
60 61 2.042831 GCTGCTGATCCCACACCAC 61.043 63.158 0.00 0.00 0.00 4.16
61 62 1.742880 CTGCTGATCCCACACCACG 60.743 63.158 0.00 0.00 0.00 4.94
62 63 2.436646 GCTGATCCCACACCACGG 60.437 66.667 0.00 0.00 0.00 4.94
63 64 3.068881 CTGATCCCACACCACGGT 58.931 61.111 0.00 0.00 0.00 4.83
72 73 2.715005 CACCACGGTGCACACAAG 59.285 61.111 20.43 9.14 39.39 3.16
73 74 2.515991 ACCACGGTGCACACAAGG 60.516 61.111 20.43 16.20 0.00 3.61
74 75 2.515991 CCACGGTGCACACAAGGT 60.516 61.111 20.43 5.08 0.00 3.50
77 78 1.377987 ACGGTGCACACAAGGTGTT 60.378 52.632 20.43 0.00 45.08 3.32
78 79 0.963355 ACGGTGCACACAAGGTGTTT 60.963 50.000 20.43 0.00 45.08 2.83
79 80 0.525242 CGGTGCACACAAGGTGTTTG 60.525 55.000 20.43 0.00 45.08 2.93
80 81 0.814457 GGTGCACACAAGGTGTTTGA 59.186 50.000 20.43 0.00 45.08 2.69
81 82 1.203523 GGTGCACACAAGGTGTTTGAA 59.796 47.619 20.43 0.00 45.08 2.69
82 83 2.529151 GTGCACACAAGGTGTTTGAAG 58.471 47.619 13.17 0.00 45.08 3.02
83 84 2.094752 GTGCACACAAGGTGTTTGAAGT 60.095 45.455 13.17 0.00 45.08 3.01
84 85 3.127895 GTGCACACAAGGTGTTTGAAGTA 59.872 43.478 13.17 0.00 45.08 2.24
85 86 3.759086 TGCACACAAGGTGTTTGAAGTAA 59.241 39.130 0.00 0.00 45.08 2.24
86 87 4.400884 TGCACACAAGGTGTTTGAAGTAAT 59.599 37.500 0.00 0.00 45.08 1.89
87 88 4.739716 GCACACAAGGTGTTTGAAGTAATG 59.260 41.667 0.00 0.00 45.08 1.90
88 89 5.678616 GCACACAAGGTGTTTGAAGTAATGT 60.679 40.000 0.00 0.00 45.08 2.71
89 90 5.971202 CACACAAGGTGTTTGAAGTAATGTC 59.029 40.000 0.00 0.00 45.08 3.06
90 91 5.067283 ACACAAGGTGTTTGAAGTAATGTCC 59.933 40.000 0.00 0.00 45.08 4.02
91 92 5.067153 CACAAGGTGTTTGAAGTAATGTCCA 59.933 40.000 0.00 0.00 39.21 4.02
92 93 5.067283 ACAAGGTGTTTGAAGTAATGTCCAC 59.933 40.000 0.00 0.00 39.21 4.02
93 94 4.142038 AGGTGTTTGAAGTAATGTCCACC 58.858 43.478 0.00 0.00 41.05 4.61
94 95 3.886505 GGTGTTTGAAGTAATGTCCACCA 59.113 43.478 0.00 0.00 40.58 4.17
95 96 4.261447 GGTGTTTGAAGTAATGTCCACCAC 60.261 45.833 0.00 0.00 40.58 4.16
96 97 3.562141 TGTTTGAAGTAATGTCCACCACG 59.438 43.478 0.00 0.00 0.00 4.94
97 98 3.755112 TTGAAGTAATGTCCACCACGA 57.245 42.857 0.00 0.00 0.00 4.35
98 99 3.973206 TGAAGTAATGTCCACCACGAT 57.027 42.857 0.00 0.00 0.00 3.73
99 100 4.280436 TGAAGTAATGTCCACCACGATT 57.720 40.909 0.00 0.00 0.00 3.34
100 101 4.000325 TGAAGTAATGTCCACCACGATTG 59.000 43.478 0.00 0.00 0.00 2.67
101 102 2.356135 AGTAATGTCCACCACGATTGC 58.644 47.619 0.00 0.00 0.00 3.56
102 103 2.027192 AGTAATGTCCACCACGATTGCT 60.027 45.455 0.00 0.00 0.00 3.91
103 104 1.909700 AATGTCCACCACGATTGCTT 58.090 45.000 0.00 0.00 0.00 3.91
104 105 1.909700 ATGTCCACCACGATTGCTTT 58.090 45.000 0.00 0.00 0.00 3.51
105 106 1.686355 TGTCCACCACGATTGCTTTT 58.314 45.000 0.00 0.00 0.00 2.27
106 107 2.028130 TGTCCACCACGATTGCTTTTT 58.972 42.857 0.00 0.00 0.00 1.94
107 108 2.223688 TGTCCACCACGATTGCTTTTTG 60.224 45.455 0.00 0.00 0.00 2.44
108 109 2.034053 GTCCACCACGATTGCTTTTTGA 59.966 45.455 0.00 0.00 0.00 2.69
109 110 2.890311 TCCACCACGATTGCTTTTTGAT 59.110 40.909 0.00 0.00 0.00 2.57
110 111 3.320541 TCCACCACGATTGCTTTTTGATT 59.679 39.130 0.00 0.00 0.00 2.57
111 112 4.520874 TCCACCACGATTGCTTTTTGATTA 59.479 37.500 0.00 0.00 0.00 1.75
112 113 5.010112 TCCACCACGATTGCTTTTTGATTAA 59.990 36.000 0.00 0.00 0.00 1.40
113 114 5.118510 CCACCACGATTGCTTTTTGATTAAC 59.881 40.000 0.00 0.00 0.00 2.01
114 115 5.920273 CACCACGATTGCTTTTTGATTAACT 59.080 36.000 0.00 0.00 0.00 2.24
115 116 7.081349 CACCACGATTGCTTTTTGATTAACTA 58.919 34.615 0.00 0.00 0.00 2.24
116 117 7.271223 CACCACGATTGCTTTTTGATTAACTAG 59.729 37.037 0.00 0.00 0.00 2.57
117 118 7.040686 ACCACGATTGCTTTTTGATTAACTAGT 60.041 33.333 0.00 0.00 0.00 2.57
118 119 7.807907 CCACGATTGCTTTTTGATTAACTAGTT 59.192 33.333 13.68 13.68 0.00 2.24
119 120 8.840867 CACGATTGCTTTTTGATTAACTAGTTC 58.159 33.333 12.39 0.00 0.00 3.01
120 121 8.564574 ACGATTGCTTTTTGATTAACTAGTTCA 58.435 29.630 12.39 0.70 0.00 3.18
121 122 9.055248 CGATTGCTTTTTGATTAACTAGTTCAG 57.945 33.333 12.39 0.00 0.00 3.02
122 123 9.899226 GATTGCTTTTTGATTAACTAGTTCAGT 57.101 29.630 12.39 0.00 40.05 3.41
135 136 6.256912 ACTAGTTCAGTTACTACAGACTGC 57.743 41.667 1.25 0.00 42.27 4.40
136 137 5.768662 ACTAGTTCAGTTACTACAGACTGCA 59.231 40.000 1.25 0.00 42.27 4.41
137 138 5.730296 AGTTCAGTTACTACAGACTGCAT 57.270 39.130 1.25 0.00 42.27 3.96
138 139 6.102897 AGTTCAGTTACTACAGACTGCATT 57.897 37.500 1.25 0.00 42.27 3.56
139 140 6.159988 AGTTCAGTTACTACAGACTGCATTC 58.840 40.000 1.25 0.00 42.27 2.67
140 141 5.073311 TCAGTTACTACAGACTGCATTCC 57.927 43.478 1.25 0.00 42.27 3.01
141 142 4.772624 TCAGTTACTACAGACTGCATTCCT 59.227 41.667 1.25 0.00 42.27 3.36
142 143 5.246203 TCAGTTACTACAGACTGCATTCCTT 59.754 40.000 1.25 0.00 42.27 3.36
143 144 6.436218 TCAGTTACTACAGACTGCATTCCTTA 59.564 38.462 1.25 0.00 42.27 2.69
144 145 7.039293 TCAGTTACTACAGACTGCATTCCTTAA 60.039 37.037 1.25 0.00 42.27 1.85
145 146 7.602644 CAGTTACTACAGACTGCATTCCTTAAA 59.397 37.037 1.25 0.00 37.11 1.52
146 147 8.154856 AGTTACTACAGACTGCATTCCTTAAAA 58.845 33.333 1.25 0.00 0.00 1.52
147 148 8.780249 GTTACTACAGACTGCATTCCTTAAAAA 58.220 33.333 1.25 0.00 0.00 1.94
148 149 7.203255 ACTACAGACTGCATTCCTTAAAAAC 57.797 36.000 1.25 0.00 0.00 2.43
149 150 6.770785 ACTACAGACTGCATTCCTTAAAAACA 59.229 34.615 1.25 0.00 0.00 2.83
150 151 5.831997 ACAGACTGCATTCCTTAAAAACAC 58.168 37.500 1.25 0.00 0.00 3.32
151 152 5.359576 ACAGACTGCATTCCTTAAAAACACA 59.640 36.000 1.25 0.00 0.00 3.72
152 153 6.127479 ACAGACTGCATTCCTTAAAAACACAA 60.127 34.615 1.25 0.00 0.00 3.33
153 154 6.756074 CAGACTGCATTCCTTAAAAACACAAA 59.244 34.615 0.00 0.00 0.00 2.83
154 155 6.980397 AGACTGCATTCCTTAAAAACACAAAG 59.020 34.615 0.00 0.00 0.00 2.77
155 156 6.872920 ACTGCATTCCTTAAAAACACAAAGA 58.127 32.000 0.00 0.00 0.00 2.52
156 157 7.327214 ACTGCATTCCTTAAAAACACAAAGAA 58.673 30.769 0.00 0.00 0.00 2.52
157 158 7.821846 ACTGCATTCCTTAAAAACACAAAGAAA 59.178 29.630 0.00 0.00 0.00 2.52
158 159 8.729805 TGCATTCCTTAAAAACACAAAGAAAT 57.270 26.923 0.00 0.00 0.00 2.17
159 160 8.825745 TGCATTCCTTAAAAACACAAAGAAATC 58.174 29.630 0.00 0.00 0.00 2.17
160 161 9.045223 GCATTCCTTAAAAACACAAAGAAATCT 57.955 29.630 0.00 0.00 0.00 2.40
163 164 9.936759 TTCCTTAAAAACACAAAGAAATCTGTT 57.063 25.926 0.00 0.00 0.00 3.16
164 165 9.936759 TCCTTAAAAACACAAAGAAATCTGTTT 57.063 25.926 0.00 0.00 38.24 2.83
173 174 9.868277 ACACAAAGAAATCTGTTTTTGTATTGA 57.132 25.926 1.66 0.00 29.62 2.57
177 178 9.450807 AAAGAAATCTGTTTTTGTATTGAGTCG 57.549 29.630 0.00 0.00 0.00 4.18
178 179 8.154649 AGAAATCTGTTTTTGTATTGAGTCGT 57.845 30.769 0.00 0.00 0.00 4.34
179 180 8.621286 AGAAATCTGTTTTTGTATTGAGTCGTT 58.379 29.630 0.00 0.00 0.00 3.85
180 181 9.872757 GAAATCTGTTTTTGTATTGAGTCGTTA 57.127 29.630 0.00 0.00 0.00 3.18
182 183 9.659830 AATCTGTTTTTGTATTGAGTCGTTAAC 57.340 29.630 0.00 0.00 0.00 2.01
183 184 7.632721 TCTGTTTTTGTATTGAGTCGTTAACC 58.367 34.615 0.00 0.00 0.00 2.85
184 185 7.496591 TCTGTTTTTGTATTGAGTCGTTAACCT 59.503 33.333 0.00 0.00 0.00 3.50
185 186 7.987649 TGTTTTTGTATTGAGTCGTTAACCTT 58.012 30.769 0.00 0.00 0.00 3.50
186 187 8.460428 TGTTTTTGTATTGAGTCGTTAACCTTT 58.540 29.630 0.00 0.00 0.00 3.11
187 188 9.292846 GTTTTTGTATTGAGTCGTTAACCTTTT 57.707 29.630 0.00 0.00 0.00 2.27
188 189 9.857957 TTTTTGTATTGAGTCGTTAACCTTTTT 57.142 25.926 0.00 0.00 0.00 1.94
237 238 5.651172 AACTTAAAATCGCCTTGTTTTGC 57.349 34.783 0.00 0.00 0.00 3.68
238 239 4.055360 ACTTAAAATCGCCTTGTTTTGCC 58.945 39.130 0.00 0.00 0.00 4.52
239 240 2.611225 AAAATCGCCTTGTTTTGCCA 57.389 40.000 0.00 0.00 0.00 4.92
240 241 2.611225 AAATCGCCTTGTTTTGCCAA 57.389 40.000 0.00 0.00 0.00 4.52
241 242 2.611225 AATCGCCTTGTTTTGCCAAA 57.389 40.000 0.00 0.00 0.00 3.28
242 243 2.837532 ATCGCCTTGTTTTGCCAAAT 57.162 40.000 0.00 0.00 0.00 2.32
243 244 2.147436 TCGCCTTGTTTTGCCAAATC 57.853 45.000 0.00 0.00 0.00 2.17
244 245 1.410517 TCGCCTTGTTTTGCCAAATCA 59.589 42.857 0.00 0.00 0.00 2.57
245 246 2.159043 TCGCCTTGTTTTGCCAAATCAA 60.159 40.909 11.90 11.90 0.00 2.57
246 247 2.221517 CGCCTTGTTTTGCCAAATCAAG 59.778 45.455 24.39 24.39 43.14 3.02
249 250 4.070630 CTTGTTTTGCCAAATCAAGGGA 57.929 40.909 23.93 2.80 41.30 4.20
250 251 3.467374 TGTTTTGCCAAATCAAGGGAC 57.533 42.857 0.00 0.00 0.00 4.46
251 252 2.103941 TGTTTTGCCAAATCAAGGGACC 59.896 45.455 0.00 0.00 0.00 4.46
252 253 2.368548 GTTTTGCCAAATCAAGGGACCT 59.631 45.455 0.00 0.00 0.00 3.85
253 254 3.534357 TTTGCCAAATCAAGGGACCTA 57.466 42.857 0.00 0.00 0.00 3.08
254 255 2.507407 TGCCAAATCAAGGGACCTAC 57.493 50.000 0.00 0.00 0.00 3.18
255 256 1.707989 TGCCAAATCAAGGGACCTACA 59.292 47.619 0.00 0.00 0.00 2.74
256 257 2.311542 TGCCAAATCAAGGGACCTACAT 59.688 45.455 0.00 0.00 0.00 2.29
257 258 2.689983 GCCAAATCAAGGGACCTACATG 59.310 50.000 0.00 0.00 0.00 3.21
258 259 3.290710 CCAAATCAAGGGACCTACATGG 58.709 50.000 0.00 0.00 42.93 3.66
259 260 2.689983 CAAATCAAGGGACCTACATGGC 59.310 50.000 0.00 0.00 40.22 4.40
260 261 1.898863 ATCAAGGGACCTACATGGCT 58.101 50.000 0.00 0.00 40.22 4.75
261 262 2.561209 TCAAGGGACCTACATGGCTA 57.439 50.000 0.00 0.00 40.22 3.93
262 263 2.116238 TCAAGGGACCTACATGGCTAC 58.884 52.381 0.00 0.00 40.22 3.58
263 264 1.837439 CAAGGGACCTACATGGCTACA 59.163 52.381 0.00 0.00 40.22 2.74
264 265 1.794714 AGGGACCTACATGGCTACAG 58.205 55.000 0.00 0.00 40.22 2.74
265 266 0.106894 GGGACCTACATGGCTACAGC 59.893 60.000 0.00 0.00 40.22 4.40
266 267 1.123928 GGACCTACATGGCTACAGCT 58.876 55.000 0.00 0.00 41.70 4.24
267 268 2.317040 GGACCTACATGGCTACAGCTA 58.683 52.381 0.00 0.00 41.70 3.32
268 269 2.036089 GGACCTACATGGCTACAGCTAC 59.964 54.545 0.00 0.00 41.70 3.58
269 270 1.681793 ACCTACATGGCTACAGCTACG 59.318 52.381 0.00 0.00 41.70 3.51
270 271 1.954382 CCTACATGGCTACAGCTACGA 59.046 52.381 0.00 0.00 41.70 3.43
271 272 2.287668 CCTACATGGCTACAGCTACGAC 60.288 54.545 0.00 0.00 41.70 4.34
272 273 1.475403 ACATGGCTACAGCTACGACT 58.525 50.000 0.00 0.00 41.70 4.18
273 274 1.135139 ACATGGCTACAGCTACGACTG 59.865 52.381 0.00 0.00 43.59 3.51
274 275 0.103208 ATGGCTACAGCTACGACTGC 59.897 55.000 0.54 0.00 41.60 4.40
275 276 0.965866 TGGCTACAGCTACGACTGCT 60.966 55.000 0.54 0.00 41.60 4.24
276 277 0.248702 GGCTACAGCTACGACTGCTC 60.249 60.000 0.54 0.00 41.60 4.26
277 278 0.452184 GCTACAGCTACGACTGCTCA 59.548 55.000 0.00 0.00 41.60 4.26
278 279 1.066303 GCTACAGCTACGACTGCTCAT 59.934 52.381 0.00 0.00 41.60 2.90
279 280 2.725490 CTACAGCTACGACTGCTCATG 58.275 52.381 0.00 0.00 41.60 3.07
280 281 0.174389 ACAGCTACGACTGCTCATGG 59.826 55.000 0.00 0.00 41.60 3.66
281 282 0.174389 CAGCTACGACTGCTCATGGT 59.826 55.000 0.00 0.00 38.92 3.55
282 283 0.174389 AGCTACGACTGCTCATGGTG 59.826 55.000 0.00 0.00 35.67 4.17
283 284 0.173481 GCTACGACTGCTCATGGTGA 59.827 55.000 0.00 0.00 0.00 4.02
284 285 1.202463 GCTACGACTGCTCATGGTGAT 60.202 52.381 0.00 0.00 0.00 3.06
285 286 2.736978 CTACGACTGCTCATGGTGATC 58.263 52.381 0.00 0.00 0.00 2.92
286 287 1.189752 ACGACTGCTCATGGTGATCT 58.810 50.000 0.00 0.00 0.00 2.75
287 288 1.134877 ACGACTGCTCATGGTGATCTG 60.135 52.381 0.00 0.00 0.00 2.90
288 289 1.135721 CGACTGCTCATGGTGATCTGA 59.864 52.381 0.00 0.00 0.00 3.27
289 290 2.798853 CGACTGCTCATGGTGATCTGAG 60.799 54.545 5.53 5.53 41.47 3.35
290 291 1.485480 ACTGCTCATGGTGATCTGAGG 59.515 52.381 10.67 0.04 39.42 3.86
291 292 1.485480 CTGCTCATGGTGATCTGAGGT 59.515 52.381 10.67 0.00 39.42 3.85
292 293 1.483827 TGCTCATGGTGATCTGAGGTC 59.516 52.381 10.67 0.00 39.42 3.85
293 294 1.202627 GCTCATGGTGATCTGAGGTCC 60.203 57.143 10.67 0.00 39.42 4.46
294 295 2.396608 CTCATGGTGATCTGAGGTCCT 58.603 52.381 0.00 0.00 36.15 3.85
295 296 3.570540 CTCATGGTGATCTGAGGTCCTA 58.429 50.000 0.00 0.00 36.15 2.94
296 297 3.963374 CTCATGGTGATCTGAGGTCCTAA 59.037 47.826 0.00 0.00 36.15 2.69
297 298 3.963374 TCATGGTGATCTGAGGTCCTAAG 59.037 47.826 0.00 0.00 0.00 2.18
298 299 2.111384 TGGTGATCTGAGGTCCTAAGC 58.889 52.381 0.00 0.00 0.00 3.09
299 300 1.414550 GGTGATCTGAGGTCCTAAGCC 59.585 57.143 0.00 0.00 0.00 4.35
300 301 1.067821 GTGATCTGAGGTCCTAAGCCG 59.932 57.143 0.00 0.00 0.00 5.52
301 302 1.342076 TGATCTGAGGTCCTAAGCCGT 60.342 52.381 0.00 0.00 0.00 5.68
302 303 1.338655 GATCTGAGGTCCTAAGCCGTC 59.661 57.143 0.00 0.00 0.00 4.79
303 304 0.683504 TCTGAGGTCCTAAGCCGTCC 60.684 60.000 0.00 0.00 0.00 4.79
304 305 2.005960 CTGAGGTCCTAAGCCGTCCG 62.006 65.000 0.00 0.00 0.00 4.79
305 306 1.751927 GAGGTCCTAAGCCGTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
306 307 1.076192 AGGTCCTAAGCCGTCCGAT 60.076 57.895 0.00 0.00 0.00 4.18
307 308 1.067582 GGTCCTAAGCCGTCCGATG 59.932 63.158 0.00 0.00 0.00 3.84
308 309 1.591863 GTCCTAAGCCGTCCGATGC 60.592 63.158 0.00 0.00 0.00 3.91
309 310 2.658593 CCTAAGCCGTCCGATGCG 60.659 66.667 0.00 0.00 0.00 4.73
328 329 2.493713 GGAGTACGAACGCATCAGAT 57.506 50.000 0.00 0.00 0.00 2.90
329 330 2.386249 GGAGTACGAACGCATCAGATC 58.614 52.381 0.00 0.00 0.00 2.75
330 331 2.223502 GGAGTACGAACGCATCAGATCA 60.224 50.000 0.00 0.00 0.00 2.92
331 332 2.784380 GAGTACGAACGCATCAGATCAC 59.216 50.000 0.00 0.00 0.00 3.06
332 333 2.423892 AGTACGAACGCATCAGATCACT 59.576 45.455 0.00 0.00 0.00 3.41
333 334 1.914634 ACGAACGCATCAGATCACTC 58.085 50.000 0.00 0.00 0.00 3.51
334 335 1.203928 CGAACGCATCAGATCACTCC 58.796 55.000 0.00 0.00 0.00 3.85
335 336 1.203928 GAACGCATCAGATCACTCCG 58.796 55.000 0.00 0.00 0.00 4.63
336 337 0.532573 AACGCATCAGATCACTCCGT 59.467 50.000 0.00 0.00 0.00 4.69
337 338 0.101399 ACGCATCAGATCACTCCGTC 59.899 55.000 0.00 0.00 0.00 4.79
338 339 0.101219 CGCATCAGATCACTCCGTCA 59.899 55.000 0.00 0.00 0.00 4.35
339 340 1.850377 GCATCAGATCACTCCGTCAG 58.150 55.000 0.00 0.00 0.00 3.51
340 341 1.850377 CATCAGATCACTCCGTCAGC 58.150 55.000 0.00 0.00 0.00 4.26
341 342 1.135721 CATCAGATCACTCCGTCAGCA 59.864 52.381 0.00 0.00 0.00 4.41
342 343 0.813821 TCAGATCACTCCGTCAGCAG 59.186 55.000 0.00 0.00 0.00 4.24
343 344 0.529833 CAGATCACTCCGTCAGCAGT 59.470 55.000 0.00 0.00 0.00 4.40
344 345 0.814457 AGATCACTCCGTCAGCAGTC 59.186 55.000 0.00 0.00 0.00 3.51
345 346 0.814457 GATCACTCCGTCAGCAGTCT 59.186 55.000 0.00 0.00 0.00 3.24
346 347 1.203523 GATCACTCCGTCAGCAGTCTT 59.796 52.381 0.00 0.00 0.00 3.01
347 348 1.040646 TCACTCCGTCAGCAGTCTTT 58.959 50.000 0.00 0.00 0.00 2.52
348 349 1.143305 CACTCCGTCAGCAGTCTTTG 58.857 55.000 0.00 0.00 0.00 2.77
349 350 0.753262 ACTCCGTCAGCAGTCTTTGT 59.247 50.000 0.00 0.00 0.00 2.83
350 351 1.961394 ACTCCGTCAGCAGTCTTTGTA 59.039 47.619 0.00 0.00 0.00 2.41
351 352 2.364324 ACTCCGTCAGCAGTCTTTGTAA 59.636 45.455 0.00 0.00 0.00 2.41
352 353 3.181469 ACTCCGTCAGCAGTCTTTGTAAA 60.181 43.478 0.00 0.00 0.00 2.01
353 354 3.799366 TCCGTCAGCAGTCTTTGTAAAA 58.201 40.909 0.00 0.00 0.00 1.52
354 355 3.558418 TCCGTCAGCAGTCTTTGTAAAAC 59.442 43.478 0.00 0.00 0.00 2.43
355 356 3.311322 CCGTCAGCAGTCTTTGTAAAACA 59.689 43.478 0.00 0.00 0.00 2.83
356 357 4.201871 CCGTCAGCAGTCTTTGTAAAACAA 60.202 41.667 0.00 0.00 36.11 2.83
357 358 5.328691 CGTCAGCAGTCTTTGTAAAACAAA 58.671 37.500 5.22 5.22 44.91 2.83
358 359 5.797934 CGTCAGCAGTCTTTGTAAAACAAAA 59.202 36.000 6.67 0.00 46.15 2.44
359 360 6.237201 CGTCAGCAGTCTTTGTAAAACAAAAC 60.237 38.462 6.67 7.75 46.15 2.43
360 361 5.797934 TCAGCAGTCTTTGTAAAACAAAACG 59.202 36.000 6.67 0.00 46.15 3.60
361 362 4.561213 AGCAGTCTTTGTAAAACAAAACGC 59.439 37.500 6.67 12.58 46.15 4.84
362 363 4.324936 GCAGTCTTTGTAAAACAAAACGCA 59.675 37.500 6.67 0.00 46.15 5.24
363 364 5.498542 GCAGTCTTTGTAAAACAAAACGCAG 60.499 40.000 6.67 0.00 46.15 5.18
364 365 5.797934 CAGTCTTTGTAAAACAAAACGCAGA 59.202 36.000 6.67 0.00 46.15 4.26
365 366 6.306837 CAGTCTTTGTAAAACAAAACGCAGAA 59.693 34.615 6.67 0.00 46.15 3.02
366 367 6.307077 AGTCTTTGTAAAACAAAACGCAGAAC 59.693 34.615 6.67 0.00 46.15 3.01
367 368 6.088350 GTCTTTGTAAAACAAAACGCAGAACA 59.912 34.615 6.67 0.00 46.15 3.18
368 369 6.809196 TCTTTGTAAAACAAAACGCAGAACAT 59.191 30.769 6.67 0.00 46.15 2.71
369 370 6.561945 TTGTAAAACAAAACGCAGAACATC 57.438 33.333 0.00 0.00 34.76 3.06
370 371 4.731000 TGTAAAACAAAACGCAGAACATCG 59.269 37.500 0.00 0.00 0.00 3.84
371 372 3.414549 AAACAAAACGCAGAACATCGT 57.585 38.095 0.00 0.00 41.06 3.73
372 373 2.663279 ACAAAACGCAGAACATCGTC 57.337 45.000 0.00 0.00 38.03 4.20
373 374 1.070843 ACAAAACGCAGAACATCGTCG 60.071 47.619 0.00 0.00 38.03 5.12
374 375 0.511221 AAAACGCAGAACATCGTCGG 59.489 50.000 0.00 0.00 38.03 4.79
375 376 1.289109 AAACGCAGAACATCGTCGGG 61.289 55.000 0.00 0.00 38.03 5.14
376 377 3.554692 CGCAGAACATCGTCGGGC 61.555 66.667 0.00 0.00 0.00 6.13
377 378 2.125512 GCAGAACATCGTCGGGCT 60.126 61.111 0.00 0.00 0.00 5.19
378 379 2.167861 GCAGAACATCGTCGGGCTC 61.168 63.158 0.00 0.00 0.00 4.70
379 380 1.874019 CAGAACATCGTCGGGCTCG 60.874 63.158 0.00 0.00 37.82 5.03
380 381 2.181021 GAACATCGTCGGGCTCGT 59.819 61.111 5.57 0.00 37.69 4.18
381 382 1.872679 GAACATCGTCGGGCTCGTC 60.873 63.158 5.57 0.00 37.69 4.20
382 383 2.267681 GAACATCGTCGGGCTCGTCT 62.268 60.000 5.57 0.00 37.69 4.18
383 384 1.874345 AACATCGTCGGGCTCGTCTT 61.874 55.000 5.57 0.00 37.69 3.01
384 385 1.153823 CATCGTCGGGCTCGTCTTT 60.154 57.895 5.57 0.00 37.69 2.52
385 386 1.139095 ATCGTCGGGCTCGTCTTTC 59.861 57.895 5.57 0.00 37.69 2.62
386 387 1.313812 ATCGTCGGGCTCGTCTTTCT 61.314 55.000 5.57 0.00 37.69 2.52
387 388 0.674581 TCGTCGGGCTCGTCTTTCTA 60.675 55.000 5.57 0.00 37.69 2.10
388 389 0.522915 CGTCGGGCTCGTCTTTCTAC 60.523 60.000 5.57 0.00 37.69 2.59
389 390 0.810016 GTCGGGCTCGTCTTTCTACT 59.190 55.000 5.57 0.00 37.69 2.57
390 391 1.201880 GTCGGGCTCGTCTTTCTACTT 59.798 52.381 5.57 0.00 37.69 2.24
391 392 1.201647 TCGGGCTCGTCTTTCTACTTG 59.798 52.381 5.57 0.00 37.69 3.16
392 393 1.201647 CGGGCTCGTCTTTCTACTTGA 59.798 52.381 0.00 0.00 0.00 3.02
393 394 2.608268 GGGCTCGTCTTTCTACTTGAC 58.392 52.381 0.00 0.00 0.00 3.18
397 398 0.982673 CGTCTTTCTACTTGACGCCG 59.017 55.000 0.00 0.00 45.00 6.46
398 399 0.714439 GTCTTTCTACTTGACGCCGC 59.286 55.000 0.00 0.00 0.00 6.53
399 400 0.389426 TCTTTCTACTTGACGCCGCC 60.389 55.000 0.00 0.00 0.00 6.13
400 401 1.683790 CTTTCTACTTGACGCCGCCG 61.684 60.000 0.00 0.00 41.14 6.46
401 402 4.789075 TCTACTTGACGCCGCCGC 62.789 66.667 0.00 0.00 38.22 6.53
430 431 2.192443 CTCCTCCGTCCTCCGCTA 59.808 66.667 0.00 0.00 34.38 4.26
431 432 2.124403 TCCTCCGTCCTCCGCTAC 60.124 66.667 0.00 0.00 34.38 3.58
432 433 3.217743 CCTCCGTCCTCCGCTACC 61.218 72.222 0.00 0.00 34.38 3.18
433 434 3.584052 CTCCGTCCTCCGCTACCG 61.584 72.222 0.00 0.00 34.38 4.02
437 438 4.509737 GTCCTCCGCTACCGCCAC 62.510 72.222 0.00 0.00 0.00 5.01
438 439 4.753662 TCCTCCGCTACCGCCACT 62.754 66.667 0.00 0.00 0.00 4.00
439 440 4.208686 CCTCCGCTACCGCCACTC 62.209 72.222 0.00 0.00 0.00 3.51
440 441 3.141488 CTCCGCTACCGCCACTCT 61.141 66.667 0.00 0.00 0.00 3.24
441 442 3.417275 CTCCGCTACCGCCACTCTG 62.417 68.421 0.00 0.00 0.00 3.35
444 445 4.082523 GCTACCGCCACTCTGCCA 62.083 66.667 0.00 0.00 0.00 4.92
445 446 2.903357 CTACCGCCACTCTGCCAT 59.097 61.111 0.00 0.00 0.00 4.40
446 447 1.227380 CTACCGCCACTCTGCCATC 60.227 63.158 0.00 0.00 0.00 3.51
447 448 1.680522 CTACCGCCACTCTGCCATCT 61.681 60.000 0.00 0.00 0.00 2.90
448 449 1.960040 TACCGCCACTCTGCCATCTG 61.960 60.000 0.00 0.00 0.00 2.90
449 450 3.200593 CGCCACTCTGCCATCTGC 61.201 66.667 0.00 0.00 41.77 4.26
450 451 2.271497 GCCACTCTGCCATCTGCT 59.729 61.111 0.00 0.00 42.00 4.24
451 452 1.378250 GCCACTCTGCCATCTGCTT 60.378 57.895 0.00 0.00 42.00 3.91
455 456 0.913451 ACTCTGCCATCTGCTTCCCT 60.913 55.000 0.00 0.00 42.00 4.20
479 481 0.967380 CTGCCGCCTCAAAATCCCTT 60.967 55.000 0.00 0.00 0.00 3.95
493 495 1.162951 TCCCTTCTCTTCCCCTCCCT 61.163 60.000 0.00 0.00 0.00 4.20
495 497 1.224381 CCCTTCTCTTCCCCTCCCTAT 59.776 57.143 0.00 0.00 0.00 2.57
496 498 2.334023 CCTTCTCTTCCCCTCCCTATG 58.666 57.143 0.00 0.00 0.00 2.23
610 620 1.430228 GAGTTCGTCCTCTCTCGGC 59.570 63.158 0.00 0.00 0.00 5.54
649 662 1.664151 GGCGCTCCAACATTACTGTAC 59.336 52.381 7.64 0.00 33.36 2.90
675 688 7.572523 TGATTTCTTGTTGATGAACTCTGTT 57.427 32.000 0.00 0.00 32.79 3.16
680 693 7.672983 TCTTGTTGATGAACTCTGTTAATCC 57.327 36.000 0.00 0.00 32.79 3.01
702 715 8.789825 ATCCATATGCAATTGTTATCTCTCTC 57.210 34.615 7.40 0.00 0.00 3.20
703 716 7.164122 TCCATATGCAATTGTTATCTCTCTCC 58.836 38.462 7.40 0.00 0.00 3.71
704 717 6.373774 CCATATGCAATTGTTATCTCTCTCCC 59.626 42.308 7.40 0.00 0.00 4.30
705 718 5.643421 ATGCAATTGTTATCTCTCTCCCT 57.357 39.130 7.40 0.00 0.00 4.20
706 719 5.028549 TGCAATTGTTATCTCTCTCCCTC 57.971 43.478 7.40 0.00 0.00 4.30
707 720 4.141620 TGCAATTGTTATCTCTCTCCCTCC 60.142 45.833 7.40 0.00 0.00 4.30
708 721 4.745172 GCAATTGTTATCTCTCTCCCTCCC 60.745 50.000 7.40 0.00 0.00 4.30
709 722 3.776731 TTGTTATCTCTCTCCCTCCCA 57.223 47.619 0.00 0.00 0.00 4.37
710 723 3.776731 TGTTATCTCTCTCCCTCCCAA 57.223 47.619 0.00 0.00 0.00 4.12
711 724 4.074799 TGTTATCTCTCTCCCTCCCAAA 57.925 45.455 0.00 0.00 0.00 3.28
763 776 6.310711 GGAGTCGAAAGTAATTTGGTGACTAG 59.689 42.308 12.14 0.00 35.73 2.57
796 809 4.309347 CAGCTCGCGCATGGCATC 62.309 66.667 8.75 0.00 43.84 3.91
797 810 4.542390 AGCTCGCGCATGGCATCT 62.542 61.111 8.75 0.00 43.84 2.90
798 811 4.309347 GCTCGCGCATGGCATCTG 62.309 66.667 8.75 0.00 43.84 2.90
799 812 2.586914 CTCGCGCATGGCATCTGA 60.587 61.111 8.75 0.00 43.84 3.27
800 813 2.879070 CTCGCGCATGGCATCTGAC 61.879 63.158 8.75 0.00 43.84 3.51
836 849 4.273969 TGGGTCAAAGTCGATTTGTGTTAC 59.726 41.667 15.30 9.17 46.96 2.50
911 934 9.643652 GATGTCTGAAATCATCTATTTTCGTTC 57.356 33.333 2.89 0.00 37.93 3.95
915 938 9.020813 TCTGAAATCATCTATTTTCGTTCGTAG 57.979 33.333 0.00 0.00 37.93 3.51
927 950 8.761575 ATTTTCGTTCGTAGTAACATCCTAAA 57.238 30.769 0.00 0.00 0.00 1.85
960 983 6.138761 CGAAAGCTTATGCCATGATTCTTAC 58.861 40.000 0.00 0.00 40.80 2.34
961 984 6.017605 CGAAAGCTTATGCCATGATTCTTACT 60.018 38.462 0.00 0.00 40.80 2.24
962 985 6.630444 AAGCTTATGCCATGATTCTTACTG 57.370 37.500 0.00 0.00 40.80 2.74
963 986 5.688807 AGCTTATGCCATGATTCTTACTGT 58.311 37.500 0.00 0.00 40.80 3.55
964 987 5.530171 AGCTTATGCCATGATTCTTACTGTG 59.470 40.000 0.00 0.00 40.80 3.66
1176 1409 3.691118 GCAGTCTGATGTGGCTGAAAATA 59.309 43.478 3.32 0.00 0.00 1.40
1497 1735 8.235226 TCTGAAAGTCGTGTAAGTATTCTACTG 58.765 37.037 0.00 0.00 35.32 2.74
1693 1931 2.166829 TGCGCAAAAATGACCCATAGT 58.833 42.857 8.16 0.00 0.00 2.12
1809 2047 6.202954 CCTACCAGATTTCCATTTATCGTGTC 59.797 42.308 0.00 0.00 0.00 3.67
2170 2417 5.708736 TGTGGAAGGATATACAACATGGT 57.291 39.130 0.00 0.00 0.00 3.55
2185 2447 1.402968 CATGGTTCATTGGAAGGAGCG 59.597 52.381 0.00 0.00 32.62 5.03
2434 2882 2.605366 GTCCAGCGAGAAAGTAAGATGC 59.395 50.000 0.00 0.00 0.00 3.91
2704 3152 4.280677 CACCTTCCAAAATACTTGGCTGAA 59.719 41.667 0.00 0.00 39.38 3.02
2789 3237 7.223260 TCTAATTCTGTCCGTCTTAGAACAA 57.777 36.000 0.00 0.00 33.69 2.83
3010 3458 2.747467 GCTGCAGGAAGGCAATGATCTA 60.747 50.000 17.12 0.00 44.40 1.98
3373 3821 5.798132 TGTCAACAAGCTATTCTCACAGAT 58.202 37.500 0.00 0.00 0.00 2.90
3930 4378 7.660030 TTTCTCTTTTCAGTTTTCAATCCCT 57.340 32.000 0.00 0.00 0.00 4.20
4048 4496 2.067013 GCCGAAAAGGTCTGTCTACAC 58.933 52.381 0.00 0.00 43.70 2.90
4144 4592 6.461092 CCATCGACAAAGTTAGGAGCATACTA 60.461 42.308 0.00 0.00 0.00 1.82
4615 5076 8.790718 TGTGCAAAACATTTATTTAATTGGCAT 58.209 25.926 0.00 0.00 32.36 4.40
4668 5129 1.808411 AATGCACTGTGGGTAGAACG 58.192 50.000 10.21 0.00 0.00 3.95
4887 5363 2.722094 TGGTATTGTTGTCAGGCATCC 58.278 47.619 0.00 0.00 0.00 3.51
4929 5405 7.681939 TGTCCAGGTAACAAATATGAAGTTC 57.318 36.000 0.00 0.00 41.41 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.003262 CAAAACTTGATGCGTGGGCG 61.003 55.000 0.00 0.00 44.10 6.13
21 22 0.031994 ACAAAACTTGATGCGTGGGC 59.968 50.000 0.00 0.00 40.52 5.36
22 23 2.126467 CAACAAAACTTGATGCGTGGG 58.874 47.619 0.00 0.00 0.00 4.61
23 24 1.522258 GCAACAAAACTTGATGCGTGG 59.478 47.619 5.97 0.00 46.80 4.94
24 25 2.909076 GCAACAAAACTTGATGCGTG 57.091 45.000 5.97 0.00 46.80 5.34
28 29 3.708890 TCAGCAGCAACAAAACTTGATG 58.291 40.909 0.00 0.00 39.95 3.07
29 30 4.553323 GATCAGCAGCAACAAAACTTGAT 58.447 39.130 0.00 0.00 0.00 2.57
30 31 3.243501 GGATCAGCAGCAACAAAACTTGA 60.244 43.478 0.00 0.00 0.00 3.02
31 32 3.054878 GGATCAGCAGCAACAAAACTTG 58.945 45.455 0.00 0.00 0.00 3.16
32 33 2.036346 GGGATCAGCAGCAACAAAACTT 59.964 45.455 0.00 0.00 0.00 2.66
33 34 1.615392 GGGATCAGCAGCAACAAAACT 59.385 47.619 0.00 0.00 0.00 2.66
34 35 1.340889 TGGGATCAGCAGCAACAAAAC 59.659 47.619 0.00 0.00 0.00 2.43
35 36 1.340889 GTGGGATCAGCAGCAACAAAA 59.659 47.619 0.00 0.00 0.00 2.44
36 37 0.961019 GTGGGATCAGCAGCAACAAA 59.039 50.000 0.00 0.00 0.00 2.83
37 38 0.178995 TGTGGGATCAGCAGCAACAA 60.179 50.000 0.00 0.00 0.00 2.83
38 39 0.890542 GTGTGGGATCAGCAGCAACA 60.891 55.000 0.00 0.00 0.00 3.33
39 40 1.589716 GGTGTGGGATCAGCAGCAAC 61.590 60.000 0.00 0.00 36.09 4.17
40 41 1.303561 GGTGTGGGATCAGCAGCAA 60.304 57.895 0.00 0.00 36.09 3.91
41 42 2.352422 GGTGTGGGATCAGCAGCA 59.648 61.111 0.00 0.00 36.09 4.41
42 43 2.042831 GTGGTGTGGGATCAGCAGC 61.043 63.158 0.00 0.44 44.54 5.25
43 44 1.742880 CGTGGTGTGGGATCAGCAG 60.743 63.158 0.00 0.00 44.54 4.24
44 45 2.347114 CGTGGTGTGGGATCAGCA 59.653 61.111 0.00 0.00 42.31 4.41
45 46 2.436646 CCGTGGTGTGGGATCAGC 60.437 66.667 0.00 0.00 36.52 4.26
46 47 1.375908 CACCGTGGTGTGGGATCAG 60.376 63.158 10.94 0.00 40.91 2.90
47 48 2.747022 CACCGTGGTGTGGGATCA 59.253 61.111 10.94 0.00 40.91 2.92
48 49 2.746277 GCACCGTGGTGTGGGATC 60.746 66.667 19.56 0.00 46.90 3.36
49 50 3.565214 TGCACCGTGGTGTGGGAT 61.565 61.111 19.56 0.00 46.90 3.85
50 51 4.555709 GTGCACCGTGGTGTGGGA 62.556 66.667 19.56 0.19 46.90 4.37
51 52 4.866224 TGTGCACCGTGGTGTGGG 62.866 66.667 19.56 0.00 46.90 4.61
52 53 3.582120 GTGTGCACCGTGGTGTGG 61.582 66.667 19.56 0.00 46.90 4.17
53 54 2.321668 CTTGTGTGCACCGTGGTGTG 62.322 60.000 19.56 0.00 46.90 3.82
54 55 2.045829 TTGTGTGCACCGTGGTGT 60.046 55.556 19.56 0.00 46.90 4.16
56 57 2.515991 CCTTGTGTGCACCGTGGT 60.516 61.111 15.69 0.00 0.00 4.16
57 58 2.515991 ACCTTGTGTGCACCGTGG 60.516 61.111 15.69 13.37 0.00 4.94
58 59 1.653094 AACACCTTGTGTGCACCGTG 61.653 55.000 15.69 14.18 46.79 4.94
59 60 0.963355 AAACACCTTGTGTGCACCGT 60.963 50.000 15.69 0.00 46.79 4.83
60 61 0.525242 CAAACACCTTGTGTGCACCG 60.525 55.000 15.69 0.00 46.79 4.94
61 62 0.814457 TCAAACACCTTGTGTGCACC 59.186 50.000 15.69 6.37 46.79 5.01
62 63 2.094752 ACTTCAAACACCTTGTGTGCAC 60.095 45.455 10.75 10.75 46.79 4.57
63 64 2.166829 ACTTCAAACACCTTGTGTGCA 58.833 42.857 0.00 0.00 46.79 4.57
64 65 2.939460 ACTTCAAACACCTTGTGTGC 57.061 45.000 0.00 0.00 46.79 4.57
65 66 5.890334 ACATTACTTCAAACACCTTGTGTG 58.110 37.500 0.00 0.00 46.79 3.82
67 68 5.067153 TGGACATTACTTCAAACACCTTGTG 59.933 40.000 0.00 0.00 39.75 3.33
68 69 5.067283 GTGGACATTACTTCAAACACCTTGT 59.933 40.000 0.00 0.00 36.34 3.16
69 70 5.507315 GGTGGACATTACTTCAAACACCTTG 60.507 44.000 0.00 0.00 42.77 3.61
70 71 4.583073 GGTGGACATTACTTCAAACACCTT 59.417 41.667 0.00 0.00 42.77 3.50
71 72 4.142038 GGTGGACATTACTTCAAACACCT 58.858 43.478 0.00 0.00 42.77 4.00
72 73 3.886505 TGGTGGACATTACTTCAAACACC 59.113 43.478 0.00 0.00 45.45 4.16
73 74 4.553938 CGTGGTGGACATTACTTCAAACAC 60.554 45.833 0.00 0.00 0.00 3.32
74 75 3.562141 CGTGGTGGACATTACTTCAAACA 59.438 43.478 0.00 0.00 0.00 2.83
75 76 3.810941 TCGTGGTGGACATTACTTCAAAC 59.189 43.478 0.00 0.00 0.00 2.93
76 77 4.074627 TCGTGGTGGACATTACTTCAAA 57.925 40.909 0.00 0.00 0.00 2.69
77 78 3.755112 TCGTGGTGGACATTACTTCAA 57.245 42.857 0.00 0.00 0.00 2.69
78 79 3.973206 ATCGTGGTGGACATTACTTCA 57.027 42.857 0.00 0.00 0.00 3.02
79 80 3.181510 GCAATCGTGGTGGACATTACTTC 60.182 47.826 0.00 0.00 0.00 3.01
80 81 2.747446 GCAATCGTGGTGGACATTACTT 59.253 45.455 0.00 0.00 0.00 2.24
81 82 2.027192 AGCAATCGTGGTGGACATTACT 60.027 45.455 0.00 0.00 33.11 2.24
82 83 2.356135 AGCAATCGTGGTGGACATTAC 58.644 47.619 0.00 0.00 33.11 1.89
83 84 2.779755 AGCAATCGTGGTGGACATTA 57.220 45.000 0.00 0.00 33.11 1.90
84 85 1.909700 AAGCAATCGTGGTGGACATT 58.090 45.000 0.00 0.00 35.09 2.71
85 86 1.909700 AAAGCAATCGTGGTGGACAT 58.090 45.000 0.00 0.00 35.09 3.06
86 87 1.686355 AAAAGCAATCGTGGTGGACA 58.314 45.000 0.00 0.00 35.09 4.02
87 88 2.034053 TCAAAAAGCAATCGTGGTGGAC 59.966 45.455 0.00 0.00 35.09 4.02
88 89 2.302260 TCAAAAAGCAATCGTGGTGGA 58.698 42.857 0.00 0.00 35.09 4.02
89 90 2.791383 TCAAAAAGCAATCGTGGTGG 57.209 45.000 0.00 0.00 35.09 4.61
90 91 5.920273 AGTTAATCAAAAAGCAATCGTGGTG 59.080 36.000 0.00 0.00 35.09 4.17
91 92 6.084326 AGTTAATCAAAAAGCAATCGTGGT 57.916 33.333 0.00 0.00 36.94 4.16
92 93 7.305474 ACTAGTTAATCAAAAAGCAATCGTGG 58.695 34.615 0.00 0.00 0.00 4.94
93 94 8.728088 AACTAGTTAATCAAAAAGCAATCGTG 57.272 30.769 6.26 0.00 0.00 4.35
94 95 8.564574 TGAACTAGTTAATCAAAAAGCAATCGT 58.435 29.630 8.42 0.00 0.00 3.73
95 96 8.948853 TGAACTAGTTAATCAAAAAGCAATCG 57.051 30.769 8.42 0.00 0.00 3.34
96 97 9.899226 ACTGAACTAGTTAATCAAAAAGCAATC 57.101 29.630 8.42 0.00 35.67 2.67
112 113 5.768662 TGCAGTCTGTAGTAACTGAACTAGT 59.231 40.000 6.69 0.00 44.54 2.57
113 114 6.255596 TGCAGTCTGTAGTAACTGAACTAG 57.744 41.667 6.69 0.00 44.54 2.57
114 115 6.835819 ATGCAGTCTGTAGTAACTGAACTA 57.164 37.500 6.69 0.00 44.54 2.24
115 116 5.730296 ATGCAGTCTGTAGTAACTGAACT 57.270 39.130 6.69 0.00 44.54 3.01
116 117 5.348997 GGAATGCAGTCTGTAGTAACTGAAC 59.651 44.000 14.60 0.00 44.54 3.18
117 118 5.246203 AGGAATGCAGTCTGTAGTAACTGAA 59.754 40.000 14.60 0.00 44.54 3.02
118 119 4.772624 AGGAATGCAGTCTGTAGTAACTGA 59.227 41.667 14.60 0.00 44.54 3.41
119 120 5.078411 AGGAATGCAGTCTGTAGTAACTG 57.922 43.478 14.60 0.00 44.57 3.16
120 121 5.746990 AAGGAATGCAGTCTGTAGTAACT 57.253 39.130 14.60 0.00 0.00 2.24
121 122 7.900782 TTTAAGGAATGCAGTCTGTAGTAAC 57.099 36.000 14.60 0.00 0.00 2.50
122 123 8.780249 GTTTTTAAGGAATGCAGTCTGTAGTAA 58.220 33.333 14.60 3.33 0.00 2.24
123 124 7.934665 TGTTTTTAAGGAATGCAGTCTGTAGTA 59.065 33.333 14.60 0.00 0.00 1.82
124 125 6.770785 TGTTTTTAAGGAATGCAGTCTGTAGT 59.229 34.615 14.60 0.00 0.00 2.73
125 126 7.078228 GTGTTTTTAAGGAATGCAGTCTGTAG 58.922 38.462 14.60 0.00 0.00 2.74
126 127 6.544197 TGTGTTTTTAAGGAATGCAGTCTGTA 59.456 34.615 14.60 3.80 0.00 2.74
127 128 5.359576 TGTGTTTTTAAGGAATGCAGTCTGT 59.640 36.000 14.60 4.80 0.00 3.41
128 129 5.830912 TGTGTTTTTAAGGAATGCAGTCTG 58.169 37.500 14.60 0.00 0.00 3.51
129 130 6.463995 TTGTGTTTTTAAGGAATGCAGTCT 57.536 33.333 14.60 0.00 0.00 3.24
130 131 6.978080 TCTTTGTGTTTTTAAGGAATGCAGTC 59.022 34.615 5.38 5.38 0.00 3.51
131 132 6.872920 TCTTTGTGTTTTTAAGGAATGCAGT 58.127 32.000 0.00 0.00 0.00 4.40
132 133 7.769272 TTCTTTGTGTTTTTAAGGAATGCAG 57.231 32.000 0.00 0.00 0.00 4.41
133 134 8.729805 ATTTCTTTGTGTTTTTAAGGAATGCA 57.270 26.923 0.00 0.00 28.40 3.96
134 135 9.045223 AGATTTCTTTGTGTTTTTAAGGAATGC 57.955 29.630 0.00 0.00 29.41 3.56
137 138 9.936759 AACAGATTTCTTTGTGTTTTTAAGGAA 57.063 25.926 0.00 0.00 28.62 3.36
138 139 9.936759 AAACAGATTTCTTTGTGTTTTTAAGGA 57.063 25.926 0.00 0.00 39.51 3.36
147 148 9.868277 TCAATACAAAAACAGATTTCTTTGTGT 57.132 25.926 8.81 0.60 33.11 3.72
151 152 9.450807 CGACTCAATACAAAAACAGATTTCTTT 57.549 29.630 0.00 0.00 0.00 2.52
152 153 8.621286 ACGACTCAATACAAAAACAGATTTCTT 58.379 29.630 0.00 0.00 0.00 2.52
153 154 8.154649 ACGACTCAATACAAAAACAGATTTCT 57.845 30.769 0.00 0.00 0.00 2.52
154 155 8.782533 AACGACTCAATACAAAAACAGATTTC 57.217 30.769 0.00 0.00 0.00 2.17
156 157 9.659830 GTTAACGACTCAATACAAAAACAGATT 57.340 29.630 0.00 0.00 0.00 2.40
157 158 8.287503 GGTTAACGACTCAATACAAAAACAGAT 58.712 33.333 0.00 0.00 0.00 2.90
158 159 7.496591 AGGTTAACGACTCAATACAAAAACAGA 59.503 33.333 0.00 0.00 0.00 3.41
159 160 7.636326 AGGTTAACGACTCAATACAAAAACAG 58.364 34.615 0.00 0.00 0.00 3.16
160 161 7.556733 AGGTTAACGACTCAATACAAAAACA 57.443 32.000 0.00 0.00 0.00 2.83
161 162 8.845942 AAAGGTTAACGACTCAATACAAAAAC 57.154 30.769 0.00 0.00 0.00 2.43
162 163 9.857957 AAAAAGGTTAACGACTCAATACAAAAA 57.142 25.926 0.00 0.00 0.00 1.94
211 212 8.917655 GCAAAACAAGGCGATTTTAAGTTTATA 58.082 29.630 0.00 0.00 0.00 0.98
212 213 7.095397 GGCAAAACAAGGCGATTTTAAGTTTAT 60.095 33.333 0.00 0.00 0.00 1.40
213 214 6.201234 GGCAAAACAAGGCGATTTTAAGTTTA 59.799 34.615 0.00 0.00 0.00 2.01
214 215 5.007234 GGCAAAACAAGGCGATTTTAAGTTT 59.993 36.000 0.00 0.00 0.00 2.66
215 216 4.509970 GGCAAAACAAGGCGATTTTAAGTT 59.490 37.500 0.00 0.00 0.00 2.66
216 217 4.055360 GGCAAAACAAGGCGATTTTAAGT 58.945 39.130 0.00 0.00 0.00 2.24
217 218 4.054671 TGGCAAAACAAGGCGATTTTAAG 58.945 39.130 0.00 0.00 0.00 1.85
218 219 4.060038 TGGCAAAACAAGGCGATTTTAA 57.940 36.364 0.00 0.00 0.00 1.52
219 220 3.735237 TGGCAAAACAAGGCGATTTTA 57.265 38.095 0.00 0.00 0.00 1.52
220 221 2.611225 TGGCAAAACAAGGCGATTTT 57.389 40.000 0.00 0.00 0.00 1.82
221 222 2.611225 TTGGCAAAACAAGGCGATTT 57.389 40.000 0.00 0.00 0.00 2.17
222 223 2.611225 TTTGGCAAAACAAGGCGATT 57.389 40.000 10.83 0.00 0.00 3.34
223 224 2.036992 TGATTTGGCAAAACAAGGCGAT 59.963 40.909 18.94 0.00 0.00 4.58
224 225 1.410517 TGATTTGGCAAAACAAGGCGA 59.589 42.857 18.94 0.00 0.00 5.54
225 226 1.863267 TGATTTGGCAAAACAAGGCG 58.137 45.000 18.94 0.00 0.00 5.52
226 227 2.549329 CCTTGATTTGGCAAAACAAGGC 59.451 45.455 42.84 21.32 41.80 4.35
227 228 3.140623 CCCTTGATTTGGCAAAACAAGG 58.859 45.455 44.00 44.00 44.18 3.61
228 229 3.809279 GTCCCTTGATTTGGCAAAACAAG 59.191 43.478 36.43 36.43 35.92 3.16
229 230 3.432890 GGTCCCTTGATTTGGCAAAACAA 60.433 43.478 26.99 26.99 0.00 2.83
230 231 2.103941 GGTCCCTTGATTTGGCAAAACA 59.896 45.455 17.70 17.63 0.00 2.83
231 232 2.368548 AGGTCCCTTGATTTGGCAAAAC 59.631 45.455 17.70 14.99 0.00 2.43
232 233 2.688477 AGGTCCCTTGATTTGGCAAAA 58.312 42.857 17.70 0.00 0.00 2.44
233 234 2.397044 AGGTCCCTTGATTTGGCAAA 57.603 45.000 16.01 16.01 0.00 3.68
234 235 2.109128 TGTAGGTCCCTTGATTTGGCAA 59.891 45.455 0.00 0.00 0.00 4.52
235 236 1.707989 TGTAGGTCCCTTGATTTGGCA 59.292 47.619 0.00 0.00 0.00 4.92
236 237 2.507407 TGTAGGTCCCTTGATTTGGC 57.493 50.000 0.00 0.00 0.00 4.52
237 238 3.290710 CCATGTAGGTCCCTTGATTTGG 58.709 50.000 0.00 0.00 0.00 3.28
238 239 2.689983 GCCATGTAGGTCCCTTGATTTG 59.310 50.000 0.00 0.00 40.61 2.32
239 240 2.582636 AGCCATGTAGGTCCCTTGATTT 59.417 45.455 0.00 0.00 40.61 2.17
240 241 2.208872 AGCCATGTAGGTCCCTTGATT 58.791 47.619 0.00 0.00 40.61 2.57
241 242 1.898863 AGCCATGTAGGTCCCTTGAT 58.101 50.000 0.00 0.00 40.61 2.57
242 243 2.116238 GTAGCCATGTAGGTCCCTTGA 58.884 52.381 0.00 0.00 40.61 3.02
243 244 1.837439 TGTAGCCATGTAGGTCCCTTG 59.163 52.381 0.00 0.00 40.61 3.61
244 245 2.119495 CTGTAGCCATGTAGGTCCCTT 58.881 52.381 0.00 0.00 40.61 3.95
245 246 1.794714 CTGTAGCCATGTAGGTCCCT 58.205 55.000 0.00 0.00 40.61 4.20
246 247 0.106894 GCTGTAGCCATGTAGGTCCC 59.893 60.000 0.00 0.00 40.61 4.46
247 248 1.123928 AGCTGTAGCCATGTAGGTCC 58.876 55.000 0.00 0.00 43.38 4.46
248 249 2.287668 CGTAGCTGTAGCCATGTAGGTC 60.288 54.545 0.00 0.00 43.38 3.85
249 250 1.681793 CGTAGCTGTAGCCATGTAGGT 59.318 52.381 0.00 0.00 43.38 3.08
250 251 1.954382 TCGTAGCTGTAGCCATGTAGG 59.046 52.381 0.00 0.00 43.38 3.18
251 252 2.619177 AGTCGTAGCTGTAGCCATGTAG 59.381 50.000 0.00 0.00 43.38 2.74
252 253 2.357952 CAGTCGTAGCTGTAGCCATGTA 59.642 50.000 0.00 0.00 43.38 2.29
253 254 1.135139 CAGTCGTAGCTGTAGCCATGT 59.865 52.381 0.00 0.00 43.38 3.21
254 255 1.845266 CAGTCGTAGCTGTAGCCATG 58.155 55.000 0.00 0.00 43.38 3.66
255 256 0.103208 GCAGTCGTAGCTGTAGCCAT 59.897 55.000 0.00 0.00 43.38 4.40
256 257 0.965866 AGCAGTCGTAGCTGTAGCCA 60.966 55.000 0.00 0.00 41.61 4.75
257 258 0.248702 GAGCAGTCGTAGCTGTAGCC 60.249 60.000 0.00 0.00 43.58 3.93
258 259 0.452184 TGAGCAGTCGTAGCTGTAGC 59.548 55.000 0.00 0.00 43.58 3.58
259 260 2.542618 CCATGAGCAGTCGTAGCTGTAG 60.543 54.545 0.00 0.00 43.58 2.74
260 261 1.405463 CCATGAGCAGTCGTAGCTGTA 59.595 52.381 0.00 0.00 43.58 2.74
261 262 0.174389 CCATGAGCAGTCGTAGCTGT 59.826 55.000 0.00 0.00 43.58 4.40
262 263 0.174389 ACCATGAGCAGTCGTAGCTG 59.826 55.000 0.00 2.51 43.58 4.24
263 264 0.174389 CACCATGAGCAGTCGTAGCT 59.826 55.000 0.00 0.00 46.82 3.32
264 265 0.173481 TCACCATGAGCAGTCGTAGC 59.827 55.000 0.00 0.00 0.00 3.58
265 266 2.360483 AGATCACCATGAGCAGTCGTAG 59.640 50.000 0.00 0.00 34.77 3.51
266 267 2.099756 CAGATCACCATGAGCAGTCGTA 59.900 50.000 0.00 0.00 34.77 3.43
267 268 1.134877 CAGATCACCATGAGCAGTCGT 60.135 52.381 0.00 0.00 34.77 4.34
268 269 1.135721 TCAGATCACCATGAGCAGTCG 59.864 52.381 0.00 0.00 34.77 4.18
269 270 2.483363 CCTCAGATCACCATGAGCAGTC 60.483 54.545 0.00 0.00 41.33 3.51
270 271 1.485480 CCTCAGATCACCATGAGCAGT 59.515 52.381 0.00 0.00 41.33 4.40
271 272 1.485480 ACCTCAGATCACCATGAGCAG 59.515 52.381 0.00 0.00 41.33 4.24
272 273 1.483827 GACCTCAGATCACCATGAGCA 59.516 52.381 0.00 0.00 41.33 4.26
273 274 1.202627 GGACCTCAGATCACCATGAGC 60.203 57.143 0.00 0.00 41.33 4.26
274 275 2.396608 AGGACCTCAGATCACCATGAG 58.603 52.381 0.00 0.00 42.14 2.90
275 276 2.557555 AGGACCTCAGATCACCATGA 57.442 50.000 0.00 0.00 0.00 3.07
276 277 3.494048 GCTTAGGACCTCAGATCACCATG 60.494 52.174 6.89 0.00 0.00 3.66
277 278 2.703007 GCTTAGGACCTCAGATCACCAT 59.297 50.000 6.89 0.00 0.00 3.55
278 279 2.111384 GCTTAGGACCTCAGATCACCA 58.889 52.381 6.89 0.00 0.00 4.17
279 280 1.414550 GGCTTAGGACCTCAGATCACC 59.585 57.143 6.89 0.00 0.00 4.02
280 281 1.067821 CGGCTTAGGACCTCAGATCAC 59.932 57.143 6.89 0.00 0.00 3.06
281 282 1.342076 ACGGCTTAGGACCTCAGATCA 60.342 52.381 6.89 0.00 0.00 2.92
282 283 1.338655 GACGGCTTAGGACCTCAGATC 59.661 57.143 6.89 0.00 0.00 2.75
283 284 1.404843 GACGGCTTAGGACCTCAGAT 58.595 55.000 6.89 0.00 0.00 2.90
284 285 0.683504 GGACGGCTTAGGACCTCAGA 60.684 60.000 6.89 0.00 0.00 3.27
285 286 1.817209 GGACGGCTTAGGACCTCAG 59.183 63.158 0.00 0.00 0.00 3.35
286 287 2.050350 CGGACGGCTTAGGACCTCA 61.050 63.158 0.00 0.00 0.00 3.86
287 288 1.108132 ATCGGACGGCTTAGGACCTC 61.108 60.000 0.00 0.00 0.00 3.85
288 289 1.076192 ATCGGACGGCTTAGGACCT 60.076 57.895 0.00 0.00 0.00 3.85
289 290 1.067582 CATCGGACGGCTTAGGACC 59.932 63.158 0.00 0.00 0.00 4.46
290 291 1.591863 GCATCGGACGGCTTAGGAC 60.592 63.158 0.00 0.00 0.00 3.85
291 292 2.812499 GCATCGGACGGCTTAGGA 59.188 61.111 0.00 0.00 0.00 2.94
292 293 2.658593 CGCATCGGACGGCTTAGG 60.659 66.667 0.00 0.00 0.00 2.69
303 304 2.565394 GCGTTCGTACTCCGCATCG 61.565 63.158 13.50 0.00 46.26 3.84
304 305 3.296584 GCGTTCGTACTCCGCATC 58.703 61.111 13.50 0.00 46.26 3.91
308 309 0.098200 TCTGATGCGTTCGTACTCCG 59.902 55.000 0.00 0.00 38.13 4.63
309 310 2.223502 TGATCTGATGCGTTCGTACTCC 60.224 50.000 0.00 0.00 0.00 3.85
310 311 2.784380 GTGATCTGATGCGTTCGTACTC 59.216 50.000 0.00 0.00 0.00 2.59
311 312 2.423892 AGTGATCTGATGCGTTCGTACT 59.576 45.455 0.00 0.00 0.00 2.73
312 313 2.784380 GAGTGATCTGATGCGTTCGTAC 59.216 50.000 0.00 0.00 0.00 3.67
313 314 2.223502 GGAGTGATCTGATGCGTTCGTA 60.224 50.000 0.00 0.00 0.00 3.43
314 315 1.469940 GGAGTGATCTGATGCGTTCGT 60.470 52.381 0.00 0.00 0.00 3.85
315 316 1.203928 GGAGTGATCTGATGCGTTCG 58.796 55.000 0.00 0.00 0.00 3.95
316 317 1.203928 CGGAGTGATCTGATGCGTTC 58.796 55.000 0.00 0.00 0.00 3.95
317 318 0.532573 ACGGAGTGATCTGATGCGTT 59.467 50.000 0.00 0.00 42.51 4.84
318 319 2.193532 ACGGAGTGATCTGATGCGT 58.806 52.632 0.00 6.22 42.51 5.24
331 332 2.724977 TACAAAGACTGCTGACGGAG 57.275 50.000 0.00 0.00 34.35 4.63
332 333 3.462483 TTTACAAAGACTGCTGACGGA 57.538 42.857 0.00 0.00 0.00 4.69
333 334 3.311322 TGTTTTACAAAGACTGCTGACGG 59.689 43.478 0.00 0.00 0.00 4.79
334 335 4.530094 TGTTTTACAAAGACTGCTGACG 57.470 40.909 0.00 0.00 0.00 4.35
345 346 6.237332 CGATGTTCTGCGTTTTGTTTTACAAA 60.237 34.615 1.10 1.10 45.37 2.83
346 347 5.228220 CGATGTTCTGCGTTTTGTTTTACAA 59.772 36.000 0.00 0.00 36.11 2.41
347 348 4.731000 CGATGTTCTGCGTTTTGTTTTACA 59.269 37.500 0.00 0.00 0.00 2.41
348 349 4.731480 ACGATGTTCTGCGTTTTGTTTTAC 59.269 37.500 0.00 0.00 37.48 2.01
349 350 4.911053 ACGATGTTCTGCGTTTTGTTTTA 58.089 34.783 0.00 0.00 37.48 1.52
350 351 3.765026 ACGATGTTCTGCGTTTTGTTTT 58.235 36.364 0.00 0.00 37.48 2.43
351 352 3.359654 GACGATGTTCTGCGTTTTGTTT 58.640 40.909 0.00 0.00 41.34 2.83
352 353 2.598907 CGACGATGTTCTGCGTTTTGTT 60.599 45.455 0.00 0.00 41.34 2.83
353 354 1.070843 CGACGATGTTCTGCGTTTTGT 60.071 47.619 0.00 0.00 41.34 2.83
354 355 1.580439 CGACGATGTTCTGCGTTTTG 58.420 50.000 0.00 0.00 41.34 2.44
355 356 0.511221 CCGACGATGTTCTGCGTTTT 59.489 50.000 0.00 0.00 41.34 2.43
356 357 1.289109 CCCGACGATGTTCTGCGTTT 61.289 55.000 0.00 0.00 41.34 3.60
357 358 1.736645 CCCGACGATGTTCTGCGTT 60.737 57.895 0.00 0.00 41.34 4.84
358 359 2.126071 CCCGACGATGTTCTGCGT 60.126 61.111 0.00 0.00 44.33 5.24
359 360 3.554692 GCCCGACGATGTTCTGCG 61.555 66.667 0.00 0.00 0.00 5.18
360 361 2.125512 AGCCCGACGATGTTCTGC 60.126 61.111 0.00 0.00 0.00 4.26
361 362 1.874019 CGAGCCCGACGATGTTCTG 60.874 63.158 0.00 0.00 38.22 3.02
362 363 2.267681 GACGAGCCCGACGATGTTCT 62.268 60.000 0.00 0.00 39.50 3.01
363 364 1.872679 GACGAGCCCGACGATGTTC 60.873 63.158 0.00 0.00 39.50 3.18
364 365 1.874345 AAGACGAGCCCGACGATGTT 61.874 55.000 0.00 0.00 39.50 2.71
365 366 1.874345 AAAGACGAGCCCGACGATGT 61.874 55.000 0.00 0.00 39.50 3.06
366 367 1.140407 GAAAGACGAGCCCGACGATG 61.140 60.000 0.00 0.00 39.50 3.84
367 368 1.139095 GAAAGACGAGCCCGACGAT 59.861 57.895 0.00 0.00 39.50 3.73
368 369 0.674581 TAGAAAGACGAGCCCGACGA 60.675 55.000 0.00 0.00 39.50 4.20
369 370 0.522915 GTAGAAAGACGAGCCCGACG 60.523 60.000 0.00 0.00 39.50 5.12
370 371 0.810016 AGTAGAAAGACGAGCCCGAC 59.190 55.000 0.00 0.00 39.50 4.79
371 372 1.201647 CAAGTAGAAAGACGAGCCCGA 59.798 52.381 0.00 0.00 39.50 5.14
372 373 1.201647 TCAAGTAGAAAGACGAGCCCG 59.798 52.381 0.00 0.00 42.50 6.13
373 374 2.608268 GTCAAGTAGAAAGACGAGCCC 58.392 52.381 0.00 0.00 0.00 5.19
379 380 0.714439 GCGGCGTCAAGTAGAAAGAC 59.286 55.000 9.37 0.00 0.00 3.01
380 381 0.389426 GGCGGCGTCAAGTAGAAAGA 60.389 55.000 6.63 0.00 0.00 2.52
381 382 1.683790 CGGCGGCGTCAAGTAGAAAG 61.684 60.000 24.74 0.00 0.00 2.62
382 383 1.735198 CGGCGGCGTCAAGTAGAAA 60.735 57.895 24.74 0.00 0.00 2.52
383 384 2.126228 CGGCGGCGTCAAGTAGAA 60.126 61.111 24.74 0.00 0.00 2.10
384 385 4.789075 GCGGCGGCGTCAAGTAGA 62.789 66.667 32.35 0.00 0.00 2.59
413 414 2.188161 GTAGCGGAGGACGGAGGAG 61.188 68.421 0.00 0.00 44.51 3.69
414 415 2.124403 GTAGCGGAGGACGGAGGA 60.124 66.667 0.00 0.00 44.51 3.71
415 416 3.217743 GGTAGCGGAGGACGGAGG 61.218 72.222 0.00 0.00 44.51 4.30
416 417 3.584052 CGGTAGCGGAGGACGGAG 61.584 72.222 6.39 0.00 44.51 4.63
420 421 4.509737 GTGGCGGTAGCGGAGGAC 62.510 72.222 17.08 0.00 46.35 3.85
421 422 4.753662 AGTGGCGGTAGCGGAGGA 62.754 66.667 17.08 0.00 46.35 3.71
422 423 4.208686 GAGTGGCGGTAGCGGAGG 62.209 72.222 17.08 0.00 46.35 4.30
423 424 3.141488 AGAGTGGCGGTAGCGGAG 61.141 66.667 17.08 0.00 46.35 4.63
424 425 3.449227 CAGAGTGGCGGTAGCGGA 61.449 66.667 17.08 0.00 46.35 5.54
441 442 2.832201 GGCAGGGAAGCAGATGGC 60.832 66.667 0.00 0.00 45.30 4.40
442 443 2.515523 CGGCAGGGAAGCAGATGG 60.516 66.667 0.00 0.00 35.83 3.51
443 444 3.207669 GCGGCAGGGAAGCAGATG 61.208 66.667 0.00 0.00 35.83 2.90
444 445 3.406200 AGCGGCAGGGAAGCAGAT 61.406 61.111 1.45 0.00 35.83 2.90
445 446 4.399395 CAGCGGCAGGGAAGCAGA 62.399 66.667 1.45 0.00 35.83 4.26
464 465 2.409948 AGAGAAGGGATTTTGAGGCG 57.590 50.000 0.00 0.00 0.00 5.52
471 472 2.209758 GGAGGGGAAGAGAAGGGATTT 58.790 52.381 0.00 0.00 0.00 2.17
479 481 0.470080 CGCATAGGGAGGGGAAGAGA 60.470 60.000 0.00 0.00 0.00 3.10
591 601 1.995646 GCCGAGAGAGGACGAACTCC 61.996 65.000 7.35 0.00 38.26 3.85
598 608 0.743701 TAGTCACGCCGAGAGAGGAC 60.744 60.000 0.00 0.00 0.00 3.85
610 620 1.148310 CAAACCTGCACCTAGTCACG 58.852 55.000 0.00 0.00 0.00 4.35
649 662 7.646314 ACAGAGTTCATCAACAAGAAATCAAG 58.354 34.615 0.00 0.00 40.26 3.02
680 693 7.166851 AGGGAGAGAGATAACAATTGCATATG 58.833 38.462 5.05 0.00 0.00 1.78
721 734 6.914259 TCGACTCCAGCAATTGTATATAGAG 58.086 40.000 7.40 7.68 0.00 2.43
741 754 5.350640 CCCTAGTCACCAAATTACTTTCGAC 59.649 44.000 0.00 0.00 0.00 4.20
763 776 4.973055 TGTGCGCACGTACCACCC 62.973 66.667 33.22 8.99 0.00 4.61
785 798 2.126417 GATGGTCAGATGCCATGCGC 62.126 60.000 0.00 0.00 45.87 6.09
798 811 1.201429 ACCCAGGTGGACAGATGGTC 61.201 60.000 0.00 0.00 46.20 4.02
799 812 1.151810 ACCCAGGTGGACAGATGGT 60.152 57.895 0.00 0.00 37.39 3.55
800 813 1.200760 TGACCCAGGTGGACAGATGG 61.201 60.000 0.00 0.00 33.68 3.51
836 849 2.079925 GCTAAGCTGTCCTTGGTCTTG 58.920 52.381 0.00 0.00 34.75 3.02
911 934 7.380602 CGGTAAGGAATTTAGGATGTTACTACG 59.619 40.741 0.00 0.00 0.00 3.51
915 938 8.496707 TTTCGGTAAGGAATTTAGGATGTTAC 57.503 34.615 0.00 0.00 0.00 2.50
927 950 3.883489 GGCATAAGCTTTCGGTAAGGAAT 59.117 43.478 3.20 0.00 41.70 3.01
960 983 1.526575 ATGCGGCCTGGAAAACACAG 61.527 55.000 0.00 0.00 35.74 3.66
961 984 0.250945 TATGCGGCCTGGAAAACACA 60.251 50.000 0.00 0.00 0.00 3.72
962 985 0.170339 GTATGCGGCCTGGAAAACAC 59.830 55.000 0.00 0.00 0.00 3.32
963 986 0.250945 TGTATGCGGCCTGGAAAACA 60.251 50.000 0.00 2.67 0.00 2.83
964 987 0.451783 CTGTATGCGGCCTGGAAAAC 59.548 55.000 0.00 0.02 0.00 2.43
1124 1357 1.818674 GGTTTATGTGAGCCAAGGGTG 59.181 52.381 0.00 0.00 0.00 4.61
1176 1409 8.936864 GTTTCAGCTGTATAACATAACAAGAGT 58.063 33.333 14.67 0.00 0.00 3.24
1195 1428 4.275936 ACCACACAGAACAATAGTTTCAGC 59.724 41.667 0.00 0.00 38.30 4.26
1390 1623 6.480651 GCCATCTTCATGCATAGATAGATGAG 59.519 42.308 25.54 19.80 40.72 2.90
1693 1931 1.918262 AGATGAGAAACATGGGCCAGA 59.082 47.619 13.78 0.00 39.56 3.86
1856 2094 5.659079 TGTAGAACAGAAATTTTTGTGGGGT 59.341 36.000 14.49 0.00 35.92 4.95
2170 2417 2.026356 TCAATCCGCTCCTTCCAATGAA 60.026 45.455 0.00 0.00 0.00 2.57
2434 2882 6.695245 CAAACCAAAACTTTCTTCGATGTTG 58.305 36.000 0.00 0.00 0.00 3.33
2704 3152 3.758554 GCATACCACTTTCACTGTCCAAT 59.241 43.478 0.00 0.00 0.00 3.16
2789 3237 3.290710 ACAGAAGCATTGGTGAAACAGT 58.709 40.909 0.00 0.00 39.98 3.55
3010 3458 3.443099 GCTTTTGCAAAGTTCTCTGGT 57.557 42.857 12.41 0.00 46.58 4.00
3373 3821 5.394738 TCTACTTCCACTTCCTTTCTCTCA 58.605 41.667 0.00 0.00 0.00 3.27
3930 4378 9.606631 GGCAAATAAAAATCATTACCCAACATA 57.393 29.630 0.00 0.00 0.00 2.29
4048 4496 4.464947 GGGGTGAGGGAGATAATGAAAAG 58.535 47.826 0.00 0.00 0.00 2.27
4144 4592 0.249676 CTCACTGCTCAGCACCATCT 59.750 55.000 0.00 0.00 33.79 2.90
4668 5129 3.055385 TGATTGCACCCACCTAACTAGTC 60.055 47.826 0.00 0.00 0.00 2.59
4887 5363 3.374745 GACAAGTTGACATGTTTGGCAG 58.625 45.455 10.54 0.00 43.32 4.85
4929 5405 1.642037 CCGAGCAACACAGCATCCTG 61.642 60.000 0.00 0.00 44.80 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.