Multiple sequence alignment - TraesCS6D01G294200 
Loading Multiple Alignment...
 
 BLAST Results  
BLAST Results - Input Sequence 
    
     Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
        to extract flanking regions for cloning. If the result of the multiple sequence alignment is
        not as expected, these results could be used for further investigation. 
    
  
    
       
      qseqid 
      sseqid 
      percentage.identical 
      alignment.length 
      no.mismatch 
      no.gap.openings 
      qstart 
      qend 
      sstart 
      send 
      evalue 
      bitscore 
     
   
  
    
      0 
      TraesCS6D01G294200 
      chr6D 
      100.000 
      3152 
      0 
      0 
      1 
      3152 
      405081134 
      405084285 
      0.000000e+00 
      5821 
     
    
      1 
      TraesCS6D01G294200 
      chr6A 
      97.262 
      1461 
      38 
      2 
      1693 
      3152 
      551640026 
      551641485 
      0.000000e+00 
      2475 
     
    
      2 
      TraesCS6D01G294200 
      chr6A 
      89.065 
      1765 
      95 
      39 
      1 
      1701 
      551637645 
      551639375 
      0.000000e+00 
      2100 
     
    
      3 
      TraesCS6D01G294200 
      chr6B 
      90.275 
      1748 
      74 
      32 
      1 
      1701 
      608995327 
      608997025 
      0.000000e+00 
      2198 
     
    
      4 
      TraesCS6D01G294200 
      chr6B 
      95.552 
      1304 
      44 
      2 
      1850 
      3152 
      608997859 
      608999149 
      0.000000e+00 
      2074 
     
    
      5 
      TraesCS6D01G294200 
      chr6B 
      95.597 
      159 
      7 
      0 
      1693 
      1851 
      608997677 
      608997835 
      4.030000e-64 
      255 
     
    
      6 
      TraesCS6D01G294200 
      chr1B 
      89.716 
      457 
      47 
      0 
      1926 
      2382 
      656526660 
      656526204 
      4.530000e-163 
      584 
     
    
      7 
      TraesCS6D01G294200 
      chr5B 
      88.841 
      466 
      52 
      0 
      1917 
      2382 
      425667760 
      425668225 
      9.810000e-160 
      573 
     
    
      8 
      TraesCS6D01G294200 
      chr5B 
      89.107 
      459 
      48 
      2 
      1926 
      2382 
      264912586 
      264912128 
      1.270000e-158 
      569 
     
    
      9 
      TraesCS6D01G294200 
      chr5B 
      75.281 
      534 
      74 
      37 
      1153 
      1681 
      264913835 
      264913355 
      5.330000e-48 
      202 
     
    
      10 
      TraesCS6D01G294200 
      chr3B 
      88.184 
      457 
      54 
      0 
      1926 
      2382 
      174463759 
      174463303 
      2.140000e-151 
      545 
     
    
      11 
      TraesCS6D01G294200 
      chr3B 
      86.560 
      439 
      44 
      8 
      1949 
      2384 
      763474033 
      763473607 
      1.320000e-128 
      470 
     
    
      12 
      TraesCS6D01G294200 
      chr1D 
      93.103 
      319 
      20 
      2 
      1947 
      2264 
      11359482 
      11359799 
      1.710000e-127 
      466 
     
    
      13 
      TraesCS6D01G294200 
      chr1D 
      92.790 
      319 
      21 
      2 
      1947 
      2264 
      156285595 
      156285912 
      7.970000e-126 
      460 
     
    
      14 
      TraesCS6D01G294200 
      chr3D 
      93.220 
      295 
      18 
      2 
      1971 
      2264 
      459882811 
      459882518 
      1.740000e-117 
      433 
     
    
      15 
      TraesCS6D01G294200 
      chr3D 
      80.337 
      534 
      59 
      26 
      955 
      1469 
      353233802 
      353233296 
      2.310000e-96 
      363 
     
    
      16 
      TraesCS6D01G294200 
      chr3D 
      95.833 
      72 
      3 
      0 
      1555 
      1626 
      566655647 
      566655718 
      1.990000e-22 
      117 
     
    
      17 
      TraesCS6D01G294200 
      chr2B 
      76.571 
      525 
      73 
      27 
      1158 
      1681 
      779042647 
      779042172 
      3.140000e-60 
      243 
     
    
      18 
      TraesCS6D01G294200 
      chr1A 
      84.239 
      184 
      19 
      1 
      1693 
      1876 
      523125177 
      523125350 
      1.500000e-38 
      171 
     
    
      19 
      TraesCS6D01G294200 
      chr7A 
      92.683 
      82 
      4 
      2 
      1602 
      1681 
      42642252 
      42642171 
      1.990000e-22 
      117 
     
    
      20 
      TraesCS6D01G294200 
      chr7A 
      94.286 
      70 
      4 
      0 
      1557 
      1626 
      46717063 
      46717132 
      1.200000e-19 
      108 
     
    
      21 
      TraesCS6D01G294200 
      chr2D 
      94.444 
      72 
      4 
      0 
      1555 
      1626 
      264298253 
      264298324 
      9.240000e-21 
      111 
     
   
    
 
BLAST Results - HSPs grouped 
    
     These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
        BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
        purely upstream or downstream may be removed if they don't overlap both primers. 
    
  
    
       
      query 
      scaffold 
      start 
      end 
      length 
      rev.comp 
      avg.bitscore 
      max.bitscore 
      avg.percent.identical 
      query.start 
      query.end 
      num_hsp 
      groupid 
      homo_length 
     
   
  
    
      0 
      TraesCS6D01G294200 
      chr6D 
      405081134 
      405084285 
      3151 
      False 
      5821.0 
      5821 
      100.0000 
      1 
      3152 
      1 
      chr6D.!!$F1 
      3151 
     
    
      1 
      TraesCS6D01G294200 
      chr6A 
      551637645 
      551641485 
      3840 
      False 
      2287.5 
      2475 
      93.1635 
      1 
      3152 
      2 
      chr6A.!!$F1 
      3151 
     
    
      2 
      TraesCS6D01G294200 
      chr6B 
      608995327 
      608999149 
      3822 
      False 
      1509.0 
      2198 
      93.8080 
      1 
      3152 
      3 
      chr6B.!!$F1 
      3151 
     
    
      3 
      TraesCS6D01G294200 
      chr5B 
      264912128 
      264913835 
      1707 
      True 
      385.5 
      569 
      82.1940 
      1153 
      2382 
      2 
      chr5B.!!$R1 
      1229 
     
    
      4 
      TraesCS6D01G294200 
      chr3D 
      353233296 
      353233802 
      506 
      True 
      363.0 
      363 
      80.3370 
      955 
      1469 
      1 
      chr3D.!!$R1 
      514 
     
   
 
 
        
            
                
                     AutoCloner calculated primer pairs  
                     These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
                        whilst remaining within the specified product range where possible. 
                 
                
                    
                 
             
        
	Forward
		Primers 
	Reverse
		Primers 
	
  
    
      Position 
      MSA Position 
      Penalty 
      Sequence 
      TM 
      GC 
      Self any TH 
      Self end TH 
      Hairpin 
      End Stability 
      Orientation 
     
   
  
    
      854 
      930 
      0.105778 
      GAGCAATCGGGAGGGAGAAG 
      59.894 
      60.0 
      0.0 
      0.0 
      0.0 
      2.85 
      F 
     
   
 
	
  
    
      Position 
      MSA Position 
      Penalty 
      Sequence 
      TM 
      GC 
      Self any TH 
      Self end TH 
      Hairpin 
      End Stability 
      Orientation 
     
   
  
    
      2153 
      3020 
      0.319813 
      CACAGCACGACATGAGACCA 
      60.32 
      55.0 
      0.0 
      0.0 
      0.0 
      4.02 
      R 
     
   
 
 
    
        
            
                 All possible primers  
                 Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
                    previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
                    during PCR or sequencing,
                    these could be used as alternatives. 
             
            
                
             
         
    
    
        Forward
            Primers 
        Reverse
            Primers 
    
    
		
  
    
      Position 
      MSA Position 
      Penalty 
      Sequence 
      TM 
      GC 
      Self any TH 
      Self end TH 
      Hairpin 
      End Stability 
     
   
  
    
      40 
      41 
      2.364311 
      GCGTGCGCAATGTTGGTTC 
      61.364 
      57.895 
      14.00 
      0.00 
      41.49 
      3.62 
     
    
      42 
      43 
      0.515127 
      CGTGCGCAATGTTGGTTCTA 
      59.485 
      50.000 
      14.00 
      0.00 
      0.00 
      2.10 
     
    
      53 
      56 
      4.395959 
      TGTTGGTTCTAGAGTGTCGTTT 
      57.604 
      40.909 
      0.00 
      0.00 
      0.00 
      3.60 
     
    
      59 
      62 
      5.300034 
      TGGTTCTAGAGTGTCGTTTCTTACA 
      59.700 
      40.000 
      0.00 
      0.00 
      0.00 
      2.41 
     
    
      98 
      101 
      4.663636 
      AGAAATTTTGTAGCGACCGAAG 
      57.336 
      40.909 
      0.00 
      0.00 
      0.00 
      3.79 
     
    
      113 
      116 
      2.552315 
      ACCGAAGCACGAAAATCACAAT 
      59.448 
      40.909 
      4.96 
      0.00 
      45.77 
      2.71 
     
    
      144 
      149 
      7.673810 
      TTCTTTTAGTAAAACAGAAAAGCGC 
      57.326 
      32.000 
      0.00 
      0.00 
      38.30 
      5.92 
     
    
      175 
      180 
      2.045524 
      TGGCACCCAAATGTTGTGAAT 
      58.954 
      42.857 
      0.00 
      0.00 
      31.66 
      2.57 
     
    
      183 
      188 
      6.538021 
      CACCCAAATGTTGTGAATTTTTCAGA 
      59.462 
      34.615 
      0.00 
      0.00 
      41.01 
      3.27 
     
    
      191 
      196 
      1.203001 
      TGAATTTTTCAGACCCCCGCT 
      60.203 
      47.619 
      0.00 
      0.00 
      34.08 
      5.52 
     
    
      220 
      225 
      7.624360 
      TCCATTTATTACAACGAGCAAGAAT 
      57.376 
      32.000 
      0.00 
      0.00 
      0.00 
      2.40 
     
    
      236 
      241 
      6.334202 
      AGCAAGAATGAAACCGTAAAAACAA 
      58.666 
      32.000 
      0.00 
      0.00 
      0.00 
      2.83 
     
    
      258 
      263 
      9.645128 
      AACAAAATCACCATGATATTCTCCATA 
      57.355 
      29.630 
      0.00 
      0.00 
      35.76 
      2.74 
     
    
      318 
      324 
      5.182487 
      GGTGTTTCTTCCCATGTTTGTTTT 
      58.818 
      37.500 
      0.00 
      0.00 
      0.00 
      2.43 
     
    
      353 
      375 
      3.243839 
      GCCAAGAAACACATCACCACATT 
      60.244 
      43.478 
      0.00 
      0.00 
      0.00 
      2.71 
     
    
      355 
      377 
      4.037803 
      CCAAGAAACACATCACCACATTCA 
      59.962 
      41.667 
      0.00 
      0.00 
      0.00 
      2.57 
     
    
      506 
      539 
      2.142319 
      CCCAGGAAAATGCCAAAAACG 
      58.858 
      47.619 
      0.00 
      0.00 
      0.00 
      3.60 
     
    
      678 
      728 
      0.757561 
      GGTAGGCAGACCCTCCTCTC 
      60.758 
      65.000 
      0.00 
      0.00 
      44.96 
      3.20 
     
    
      680 
      730 
      0.926720 
      TAGGCAGACCCTCCTCTCCT 
      60.927 
      60.000 
      0.00 
      0.00 
      44.96 
      3.69 
     
    
      682 
      732 
      1.309688 
      GCAGACCCTCCTCTCCTCT 
      59.690 
      63.158 
      0.00 
      0.00 
      0.00 
      3.69 
     
    
      848 
      924 
      1.753368 
      GAGGAGGAGCAATCGGGAGG 
      61.753 
      65.000 
      0.00 
      0.00 
      0.00 
      4.30 
     
    
      849 
      925 
      2.812619 
      GGAGGAGCAATCGGGAGGG 
      61.813 
      68.421 
      0.00 
      0.00 
      0.00 
      4.30 
     
    
      850 
      926 
      1.762460 
      GAGGAGCAATCGGGAGGGA 
      60.762 
      63.158 
      0.00 
      0.00 
      0.00 
      4.20 
     
    
      851 
      927 
      1.753368 
      GAGGAGCAATCGGGAGGGAG 
      61.753 
      65.000 
      0.00 
      0.00 
      0.00 
      4.30 
     
    
      852 
      928 
      1.762460 
      GGAGCAATCGGGAGGGAGA 
      60.762 
      63.158 
      0.00 
      0.00 
      0.00 
      3.71 
     
    
      853 
      929 
      1.338136 
      GGAGCAATCGGGAGGGAGAA 
      61.338 
      60.000 
      0.00 
      0.00 
      0.00 
      2.87 
     
    
      854 
      930 
      0.105778 
      GAGCAATCGGGAGGGAGAAG 
      59.894 
      60.000 
      0.00 
      0.00 
      0.00 
      2.85 
     
    
      855 
      931 
      0.618968 
      AGCAATCGGGAGGGAGAAGT 
      60.619 
      55.000 
      0.00 
      0.00 
      0.00 
      3.01 
     
    
      856 
      932 
      1.120530 
      GCAATCGGGAGGGAGAAGTA 
      58.879 
      55.000 
      0.00 
      0.00 
      0.00 
      2.24 
     
    
      903 
      987 
      5.067413 
      GGATTCGGCGTGGATAGATAGATAA 
      59.933 
      44.000 
      6.85 
      0.00 
      0.00 
      1.75 
     
    
      953 
      1039 
      2.025037 
      TGCTCATTAACCCAGCATTCCT 
      60.025 
      45.455 
      1.56 
      0.00 
      38.25 
      3.36 
     
    
      954 
      1040 
      3.026694 
      GCTCATTAACCCAGCATTCCTT 
      58.973 
      45.455 
      0.00 
      0.00 
      33.06 
      3.36 
     
    
      955 
      1041 
      3.448660 
      GCTCATTAACCCAGCATTCCTTT 
      59.551 
      43.478 
      0.00 
      0.00 
      33.06 
      3.11 
     
    
      956 
      1042 
      4.440663 
      GCTCATTAACCCAGCATTCCTTTC 
      60.441 
      45.833 
      0.00 
      0.00 
      33.06 
      2.62 
     
    
      957 
      1043 
      4.023291 
      TCATTAACCCAGCATTCCTTTCC 
      58.977 
      43.478 
      0.00 
      0.00 
      0.00 
      3.13 
     
    
      958 
      1044 
      3.825908 
      TTAACCCAGCATTCCTTTCCT 
      57.174 
      42.857 
      0.00 
      0.00 
      0.00 
      3.36 
     
    
      980 
      1072 
      3.036429 
      GCTGCCATTCTCGGGAGGT 
      62.036 
      63.158 
      0.50 
      0.00 
      44.30 
      3.85 
     
    
      981 
      1073 
      1.153289 
      CTGCCATTCTCGGGAGGTG 
      60.153 
      63.158 
      0.00 
      0.00 
      40.65 
      4.00 
     
    
      982 
      1074 
      2.190578 
      GCCATTCTCGGGAGGTGG 
      59.809 
      66.667 
      13.02 
      13.02 
      37.53 
      4.61 
     
    
      983 
      1075 
      2.670148 
      GCCATTCTCGGGAGGTGGT 
      61.670 
      63.158 
      17.17 
      0.00 
      37.13 
      4.16 
     
    
      984 
      1076 
      1.335132 
      GCCATTCTCGGGAGGTGGTA 
      61.335 
      60.000 
      17.17 
      0.00 
      37.13 
      3.25 
     
    
      985 
      1077 
      0.753262 
      CCATTCTCGGGAGGTGGTAG 
      59.247 
      60.000 
      9.93 
      0.00 
      33.16 
      3.18 
     
    
      986 
      1078 
      0.753262 
      CATTCTCGGGAGGTGGTAGG 
      59.247 
      60.000 
      0.00 
      0.00 
      0.00 
      3.18 
     
    
      987 
      1079 
      1.049289 
      ATTCTCGGGAGGTGGTAGGC 
      61.049 
      60.000 
      0.00 
      0.00 
      0.00 
      3.93 
     
    
      988 
      1080 
      3.528370 
      CTCGGGAGGTGGTAGGCG 
      61.528 
      72.222 
      0.00 
      0.00 
      0.00 
      5.52 
     
    
      991 
      1083 
      3.155167 
      GGGAGGTGGTAGGCGGAG 
      61.155 
      72.222 
      0.00 
      0.00 
      0.00 
      4.63 
     
    
      992 
      1084 
      2.363925 
      GGAGGTGGTAGGCGGAGT 
      60.364 
      66.667 
      0.00 
      0.00 
      0.00 
      3.85 
     
    
      993 
      1085 
      2.424733 
      GGAGGTGGTAGGCGGAGTC 
      61.425 
      68.421 
      0.00 
      0.00 
      0.00 
      3.36 
     
    
      1008 
      1100 
      0.037326 
      GAGTCGTCAGCATGGTTCCA 
      60.037 
      55.000 
      0.00 
      0.00 
      36.16 
      3.53 
     
    
      1242 
      1360 
      1.078918 
      TGAGAAGGAGCACATGCCG 
      60.079 
      57.895 
      0.00 
      0.00 
      43.38 
      5.69 
     
    
      1376 
      1494 
      0.586802 
      GATTCCAATCGCCGCTTACC 
      59.413 
      55.000 
      0.00 
      0.00 
      0.00 
      2.85 
     
    
      1377 
      1495 
      0.180406 
      ATTCCAATCGCCGCTTACCT 
      59.820 
      50.000 
      0.00 
      0.00 
      0.00 
      3.08 
     
    
      1474 
      1598 
      3.546815 
      CGATTTCTCGTTGGATTGATGCC 
      60.547 
      47.826 
      0.00 
      0.00 
      40.07 
      4.40 
     
    
      1498 
      1632 
      4.108299 
      TGCCGCCCCGATGTGATT 
      62.108 
      61.111 
      0.00 
      0.00 
      0.00 
      2.57 
     
    
      1629 
      1763 
      7.290481 
      GTCTATCCCCTTCCTGTAAGTCTTATT 
      59.710 
      40.741 
      0.00 
      0.00 
      32.89 
      1.40 
     
    
      1684 
      1829 
      5.201243 
      ACCCTGCTAAAATCCCTTAATCAC 
      58.799 
      41.667 
      0.00 
      0.00 
      0.00 
      3.06 
     
    
      1691 
      1836 
      4.423625 
      AAATCCCTTAATCACGGAGGAG 
      57.576 
      45.455 
      0.00 
      0.00 
      32.11 
      3.69 
     
    
      1846 
      2686 
      3.754323 
      TCACTTACTAAACCATTTGCCCG 
      59.246 
      43.478 
      0.00 
      0.00 
      0.00 
      6.13 
     
    
      1922 
      2787 
      8.778358 
      CATTTGCCTAAATACCTCTTATGTCTC 
      58.222 
      37.037 
      0.00 
      0.00 
      34.81 
      3.36 
     
    
      1924 
      2789 
      4.924462 
      GCCTAAATACCTCTTATGTCTCGC 
      59.076 
      45.833 
      0.00 
      0.00 
      0.00 
      5.03 
     
    
      2153 
      3020 
      2.172293 
      GGAGGAGAATTGGCAGATGACT 
      59.828 
      50.000 
      0.00 
      0.00 
      0.00 
      3.41 
     
    
      2253 
      3120 
      4.634184 
      TTGGTCACTCGAGAACTATAGC 
      57.366 
      45.455 
      21.68 
      7.44 
      0.00 
      2.97 
     
    
      2324 
      3191 
      6.531503 
      TGACCCATAAAAACAAACAGTTCA 
      57.468 
      33.333 
      0.00 
      0.00 
      40.26 
      3.18 
     
    
      2422 
      3289 
      1.133853 
      GGCAGAGATGGAGCAAGGAAT 
      60.134 
      52.381 
      0.00 
      0.00 
      0.00 
      3.01 
     
    
      2468 
      3336 
      6.211384 
      AGCTCTATTGCCCTGTTTTGTATTTT 
      59.789 
      34.615 
      0.00 
      0.00 
      0.00 
      1.82 
     
    
      2544 
      3412 
      2.426738 
      GGCGGTGAATGAAAATGATCCA 
      59.573 
      45.455 
      0.00 
      0.00 
      0.00 
      3.41 
     
    
      2549 
      3417 
      6.401367 
      GCGGTGAATGAAAATGATCCAAAAAG 
      60.401 
      38.462 
      0.00 
      0.00 
      0.00 
      2.27 
     
    
      2833 
      3702 
      6.952773 
      TTGTTTCCTTACAAGTGCATTACT 
      57.047 
      33.333 
      0.00 
      0.00 
      42.89 
      2.24 
     
    
      2854 
      3723 
      8.934023 
      TTACTCTTTACCATTTGATTTGGAGT 
      57.066 
      30.769 
      0.00 
      0.00 
      37.69 
      3.85 
     
    
      2907 
      3776 
      1.762957 
      GAGTAGCACTGATGGCCCTAA 
      59.237 
      52.381 
      0.00 
      0.00 
      0.00 
      2.69 
     
    
      2940 
      3809 
      4.203654 
      AGACCCGTAAATGAAACCTCTC 
      57.796 
      45.455 
      0.00 
      0.00 
      0.00 
      3.20 
     
    
      2943 
      3812 
      1.664151 
      CCGTAAATGAAACCTCTCGCC 
      59.336 
      52.381 
      0.00 
      0.00 
      0.00 
      5.54 
     
    
      2964 
      3833 
      4.142687 
      GCCGTTGAATACTGTAGTGCAATT 
      60.143 
      41.667 
      0.00 
      0.00 
      0.00 
      2.32 
     
    
      2965 
      3834 
      5.323900 
      CCGTTGAATACTGTAGTGCAATTG 
      58.676 
      41.667 
      0.00 
      0.00 
      0.00 
      2.32 
     
    
      2968 
      3837 
      6.348132 
      CGTTGAATACTGTAGTGCAATTGGAA 
      60.348 
      38.462 
      7.72 
      0.00 
      0.00 
      3.53 
     
    
      2973 
      3842 
      9.423061 
      GAATACTGTAGTGCAATTGGAATTTTT 
      57.577 
      29.630 
      4.95 
      0.00 
      0.00 
      1.94 
     
   
	 
    
		
  
    
      Position 
      MSA Position 
      Penalty 
      Sequence 
      TM 
      GC 
      Self any TH 
      Self end TH 
      Hairpin 
      End Stability 
     
   
  
    
      3 
      4 
      1.300620 
      CACGACAAACGAGGAGGCA 
      60.301 
      57.895 
      0.00 
      0.00 
      45.77 
      4.75 
     
    
      40 
      41 
      4.321217 
      CGCTTGTAAGAAACGACACTCTAG 
      59.679 
      45.833 
      0.00 
      0.00 
      0.00 
      2.43 
     
    
      42 
      43 
      3.050619 
      CGCTTGTAAGAAACGACACTCT 
      58.949 
      45.455 
      0.00 
      0.00 
      0.00 
      3.24 
     
    
      53 
      56 
      1.810151 
      GTGGCAAATCCGCTTGTAAGA 
      59.190 
      47.619 
      0.00 
      0.00 
      42.12 
      2.10 
     
    
      59 
      62 
      0.240945 
      CTTTCGTGGCAAATCCGCTT 
      59.759 
      50.000 
      0.00 
      0.00 
      43.21 
      4.68 
     
    
      98 
      101 
      8.452989 
      AGAAAATTAGATTGTGATTTTCGTGC 
      57.547 
      30.769 
      14.20 
      0.00 
      46.55 
      5.34 
     
    
      143 
      148 
      1.892474 
      TGGGTGCCAAAATTAGTCTGC 
      59.108 
      47.619 
      0.00 
      0.00 
      0.00 
      4.26 
     
    
      167 
      172 
      3.552068 
      CGGGGGTCTGAAAAATTCACAAC 
      60.552 
      47.826 
      0.00 
      0.00 
      35.46 
      3.32 
     
    
      175 
      180 
      1.460273 
      GCAAGCGGGGGTCTGAAAAA 
      61.460 
      55.000 
      0.00 
      0.00 
      0.00 
      1.94 
     
    
      183 
      188 
      2.803593 
      AAATGGATGCAAGCGGGGGT 
      62.804 
      55.000 
      0.00 
      0.00 
      0.00 
      4.95 
     
    
      191 
      196 
      5.124617 
      TGCTCGTTGTAATAAATGGATGCAA 
      59.875 
      36.000 
      0.00 
      0.00 
      0.00 
      4.08 
     
    
      220 
      225 
      6.395629 
      TGGTGATTTTGTTTTTACGGTTTCA 
      58.604 
      32.000 
      0.00 
      0.00 
      0.00 
      2.69 
     
    
      236 
      241 
      8.219868 
      TGTGTATGGAGAATATCATGGTGATTT 
      58.780 
      33.333 
      0.00 
      0.00 
      38.26 
      2.17 
     
    
      258 
      263 
      6.323996 
      TCGGAGATCTTTCCTTGTATATGTGT 
      59.676 
      38.462 
      0.00 
      0.00 
      34.96 
      3.72 
     
    
      318 
      324 
      4.057432 
      GTTTCTTGGCTTATTTGCTTGCA 
      58.943 
      39.130 
      0.00 
      0.00 
      0.00 
      4.08 
     
    
      355 
      377 
      8.808092 
      GCCTCTGTTCTAGGTTAGTAATATGAT 
      58.192 
      37.037 
      0.00 
      0.00 
      36.43 
      2.45 
     
    
      506 
      539 
      0.875059 
      CTTCCTGGCGGAGTTGTTTC 
      59.125 
      55.000 
      0.00 
      0.00 
      41.25 
      2.78 
     
    
      678 
      728 
      2.612251 
      GGGAGGAGGGAGGAGAGG 
      59.388 
      72.222 
      0.00 
      0.00 
      0.00 
      3.69 
     
    
      680 
      730 
      3.036959 
      GGGGGAGGAGGGAGGAGA 
      61.037 
      72.222 
      0.00 
      0.00 
      0.00 
      3.71 
     
    
      682 
      732 
      3.036959 
      GAGGGGGAGGAGGGAGGA 
      61.037 
      72.222 
      0.00 
      0.00 
      0.00 
      3.71 
     
    
      848 
      924 
      6.281405 
      TCTTCCTGCGAATTTATACTTCTCC 
      58.719 
      40.000 
      0.00 
      0.00 
      0.00 
      3.71 
     
    
      849 
      925 
      7.168469 
      GTCTCTTCCTGCGAATTTATACTTCTC 
      59.832 
      40.741 
      0.00 
      0.00 
      0.00 
      2.87 
     
    
      850 
      926 
      6.981559 
      GTCTCTTCCTGCGAATTTATACTTCT 
      59.018 
      38.462 
      0.00 
      0.00 
      0.00 
      2.85 
     
    
      851 
      927 
      6.074782 
      CGTCTCTTCCTGCGAATTTATACTTC 
      60.075 
      42.308 
      0.00 
      0.00 
      0.00 
      3.01 
     
    
      852 
      928 
      5.749109 
      CGTCTCTTCCTGCGAATTTATACTT 
      59.251 
      40.000 
      0.00 
      0.00 
      0.00 
      2.24 
     
    
      853 
      929 
      5.067413 
      TCGTCTCTTCCTGCGAATTTATACT 
      59.933 
      40.000 
      0.00 
      0.00 
      0.00 
      2.12 
     
    
      854 
      930 
      5.279384 
      TCGTCTCTTCCTGCGAATTTATAC 
      58.721 
      41.667 
      0.00 
      0.00 
      0.00 
      1.47 
     
    
      855 
      931 
      5.507482 
      CCTCGTCTCTTCCTGCGAATTTATA 
      60.507 
      44.000 
      0.00 
      0.00 
      32.84 
      0.98 
     
    
      856 
      932 
      4.363999 
      CTCGTCTCTTCCTGCGAATTTAT 
      58.636 
      43.478 
      0.00 
      0.00 
      32.84 
      1.40 
     
    
      903 
      987 
      5.560966 
      AAACCGATGCGAACTGATTTATT 
      57.439 
      34.783 
      0.00 
      0.00 
      0.00 
      1.40 
     
    
      953 
      1039 
      2.283101 
      AATGGCAGCGGCAGGAAA 
      60.283 
      55.556 
      11.88 
      0.00 
      42.43 
      3.13 
     
    
      954 
      1040 
      2.751436 
      GAATGGCAGCGGCAGGAA 
      60.751 
      61.111 
      11.88 
      0.00 
      42.43 
      3.36 
     
    
      955 
      1041 
      3.687321 
      GAGAATGGCAGCGGCAGGA 
      62.687 
      63.158 
      11.88 
      0.00 
      42.43 
      3.86 
     
    
      956 
      1042 
      3.207669 
      GAGAATGGCAGCGGCAGG 
      61.208 
      66.667 
      11.88 
      0.00 
      42.43 
      4.85 
     
    
      957 
      1043 
      3.570638 
      CGAGAATGGCAGCGGCAG 
      61.571 
      66.667 
      11.88 
      0.00 
      42.43 
      4.85 
     
    
      980 
      1072 
      2.034532 
      TGACGACTCCGCCTACCA 
      59.965 
      61.111 
      0.00 
      0.00 
      39.95 
      3.25 
     
    
      981 
      1073 
      2.799371 
      CTGACGACTCCGCCTACC 
      59.201 
      66.667 
      0.00 
      0.00 
      39.95 
      3.18 
     
    
      982 
      1074 
      2.005960 
      ATGCTGACGACTCCGCCTAC 
      62.006 
      60.000 
      0.00 
      0.00 
      39.95 
      3.18 
     
    
      983 
      1075 
      1.753078 
      ATGCTGACGACTCCGCCTA 
      60.753 
      57.895 
      0.00 
      0.00 
      39.95 
      3.93 
     
    
      984 
      1076 
      3.071206 
      ATGCTGACGACTCCGCCT 
      61.071 
      61.111 
      0.00 
      0.00 
      39.95 
      5.52 
     
    
      985 
      1077 
      2.887568 
      CATGCTGACGACTCCGCC 
      60.888 
      66.667 
      0.00 
      0.00 
      39.95 
      6.13 
     
    
      986 
      1078 
      2.887568 
      CCATGCTGACGACTCCGC 
      60.888 
      66.667 
      0.00 
      0.00 
      39.95 
      5.54 
     
    
      987 
      1079 
      1.078759 
      GAACCATGCTGACGACTCCG 
      61.079 
      60.000 
      0.00 
      0.00 
      42.50 
      4.63 
     
    
      988 
      1080 
      0.741221 
      GGAACCATGCTGACGACTCC 
      60.741 
      60.000 
      0.00 
      0.00 
      0.00 
      3.85 
     
    
      989 
      1081 
      0.037326 
      TGGAACCATGCTGACGACTC 
      60.037 
      55.000 
      0.00 
      0.00 
      0.00 
      3.36 
     
    
      990 
      1082 
      0.615331 
      ATGGAACCATGCTGACGACT 
      59.385 
      50.000 
      5.47 
      0.00 
      35.03 
      4.18 
     
    
      991 
      1083 
      1.009829 
      GATGGAACCATGCTGACGAC 
      58.990 
      55.000 
      11.27 
      0.00 
      36.70 
      4.34 
     
    
      992 
      1084 
      0.107703 
      GGATGGAACCATGCTGACGA 
      60.108 
      55.000 
      16.12 
      0.00 
      40.82 
      4.20 
     
    
      993 
      1085 
      1.431488 
      CGGATGGAACCATGCTGACG 
      61.431 
      60.000 
      19.74 
      9.34 
      41.64 
      4.35 
     
    
      1008 
      1100 
      4.203076 
      GCGCAGTCGTACCCGGAT 
      62.203 
      66.667 
      0.73 
      0.00 
      38.14 
      4.18 
     
    
      1224 
      1342 
      1.078918 
      CGGCATGTGCTCCTTCTCA 
      60.079 
      57.895 
      4.84 
      0.00 
      41.70 
      3.27 
     
    
      1629 
      1763 
      5.600069 
      AGTTGCTACTGAGATGATGATGGTA 
      59.400 
      40.000 
      0.00 
      0.00 
      31.99 
      3.25 
     
    
      1684 
      1829 
      0.679505 
      TCTGAACACCAACTCCTCCG 
      59.320 
      55.000 
      0.00 
      0.00 
      0.00 
      4.63 
     
    
      1691 
      1836 
      3.134458 
      CTCTGAAGGTCTGAACACCAAC 
      58.866 
      50.000 
      0.00 
      0.00 
      39.16 
      3.77 
     
    
      1924 
      2789 
      1.929836 
      GCATCTTAACACTCGCTCCTG 
      59.070 
      52.381 
      0.00 
      0.00 
      0.00 
      3.86 
     
    
      2037 
      2902 
      3.357919 
      GCAGCAGCATCCAACACA 
      58.642 
      55.556 
      0.00 
      0.00 
      41.58 
      3.72 
     
    
      2153 
      3020 
      0.319813 
      CACAGCACGACATGAGACCA 
      60.320 
      55.000 
      0.00 
      0.00 
      0.00 
      4.02 
     
    
      2253 
      3120 
      1.148310 
      CCAGCAACTACTTGACCACG 
      58.852 
      55.000 
      0.00 
      0.00 
      0.00 
      4.94 
     
    
      2324 
      3191 
      2.434884 
      CATGAACAGGCTCGCGGT 
      60.435 
      61.111 
      6.13 
      0.00 
      0.00 
      5.68 
     
    
      2422 
      3289 
      4.633126 
      GCTCTCATCTCTACAACATGCAAA 
      59.367 
      41.667 
      0.00 
      0.00 
      0.00 
      3.68 
     
    
      2468 
      3336 
      6.252233 
      TCATTGGAAACTGAATATGGAACCA 
      58.748 
      36.000 
      0.00 
      0.00 
      0.00 
      3.67 
     
    
      2544 
      3412 
      3.199946 
      TGTATCTCAGCCGATCCCTTTTT 
      59.800 
      43.478 
      0.00 
      0.00 
      0.00 
      1.94 
     
    
      2549 
      3417 
      1.621992 
      TCTGTATCTCAGCCGATCCC 
      58.378 
      55.000 
      0.00 
      0.00 
      43.32 
      3.85 
     
    
      2631 
      3499 
      9.793259 
      ATAGTAGACATCACAGAAAAAGGAAAA 
      57.207 
      29.630 
      0.00 
      0.00 
      0.00 
      2.29 
     
    
      2802 
      3671 
      2.432444 
      TGTAAGGAAACAAGCATCCCG 
      58.568 
      47.619 
      0.00 
      0.00 
      36.31 
      5.14 
     
    
      2810 
      3679 
      6.770785 
      AGAGTAATGCACTTGTAAGGAAACAA 
      59.229 
      34.615 
      0.00 
      0.00 
      37.72 
      2.83 
     
    
      2907 
      3776 
      0.978146 
      ACGGGTCTAGCAGGCTGATT 
      60.978 
      55.000 
      20.86 
      7.99 
      0.00 
      2.57 
     
    
      2940 
      3809 
      1.323534 
      GCACTACAGTATTCAACGGCG 
      59.676 
      52.381 
      4.80 
      4.80 
      0.00 
      6.46 
     
    
      2943 
      3812 
      5.121611 
      TCCAATTGCACTACAGTATTCAACG 
      59.878 
      40.000 
      0.00 
      0.00 
      0.00 
      4.10 
     
    
      2973 
      3842 
      8.922931 
      AGGTTTGTGAATGCATATACATATCA 
      57.077 
      30.769 
      14.45 
      4.17 
      0.00 
      2.15 
     
   
	 
	
  
 
Based at the University of Bristol  with support from BBSRC .
 
 
AutoCloner maintained by Alex Coulton.