Multiple sequence alignment - TraesCS6D01G293400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G293400 chr6D 100.000 5036 0 0 1 5036 404218206 404223241 0.000000e+00 9300.0
1 TraesCS6D01G293400 chr6D 94.444 72 3 1 1736 1807 404219875 404219945 5.330000e-20 110.0
2 TraesCS6D01G293400 chr6D 94.444 72 3 1 1670 1740 404219941 404220012 5.330000e-20 110.0
3 TraesCS6D01G293400 chr6A 92.606 2137 110 27 2138 4245 550736383 550738500 0.000000e+00 3027.0
4 TraesCS6D01G293400 chr6A 84.734 845 75 33 358 1175 550732002 550732819 0.000000e+00 797.0
5 TraesCS6D01G293400 chr6A 85.444 529 56 17 4246 4770 550738440 550738951 9.600000e-147 531.0
6 TraesCS6D01G293400 chr6A 86.695 233 28 3 135 365 550731610 550731841 6.470000e-64 255.0
7 TraesCS6D01G293400 chr6A 95.161 124 5 1 28 150 550731465 550731588 1.430000e-45 195.0
8 TraesCS6D01G293400 chr6A 93.814 97 5 1 4842 4938 596540259 596540354 1.460000e-30 145.0
9 TraesCS6D01G293400 chr6B 92.194 1012 37 7 3196 4206 606288199 606289169 0.000000e+00 1393.0
10 TraesCS6D01G293400 chr6B 92.477 864 35 6 2192 3026 606287338 606288200 0.000000e+00 1208.0
11 TraesCS6D01G293400 chr6B 86.798 962 59 27 330 1231 606285192 606286145 0.000000e+00 1011.0
12 TraesCS6D01G293400 chr6B 91.826 367 26 4 1736 2100 606286568 606286932 4.500000e-140 508.0
13 TraesCS6D01G293400 chr6B 87.460 311 19 6 1266 1571 606286134 606286429 1.740000e-89 340.0
14 TraesCS6D01G293400 chr6B 92.903 155 10 1 4423 4577 606289767 606289920 1.820000e-54 224.0
15 TraesCS6D01G293400 chr6B 93.706 143 7 2 1599 1740 606286498 606286639 3.950000e-51 213.0
16 TraesCS6D01G293400 chr6B 94.783 115 4 2 2096 2209 606287206 606287319 1.440000e-40 178.0
17 TraesCS6D01G293400 chr6B 95.876 97 3 1 4842 4938 606290130 606290225 6.750000e-34 156.0
18 TraesCS6D01G293400 chr6B 92.784 97 6 1 4842 4938 684718932 684719027 6.800000e-29 139.0
19 TraesCS6D01G293400 chr6B 92.784 97 6 1 4842 4938 684753928 684754023 6.800000e-29 139.0
20 TraesCS6D01G293400 chr6B 92.308 65 5 0 4691 4755 606289956 606290020 5.370000e-15 93.5
21 TraesCS6D01G293400 chr7D 79.784 648 67 32 65 651 245368006 245368650 3.630000e-111 412.0
22 TraesCS6D01G293400 chr7D 95.000 100 5 0 4937 5036 456373366 456373267 1.880000e-34 158.0
23 TraesCS6D01G293400 chr7D 95.000 100 5 0 4937 5036 600893774 600893675 1.880000e-34 158.0
24 TraesCS6D01G293400 chr7D 95.000 100 4 1 4937 5036 33204291 33204193 6.750000e-34 156.0
25 TraesCS6D01G293400 chr7D 94.792 96 4 1 4843 4938 613431928 613431834 1.130000e-31 148.0
26 TraesCS6D01G293400 chr1A 79.598 647 68 33 65 651 584796395 584795753 6.070000e-109 405.0
27 TraesCS6D01G293400 chr1A 79.077 650 71 34 65 654 18856036 18855392 2.200000e-103 387.0
28 TraesCS6D01G293400 chr4B 78.760 645 77 24 65 651 217281738 217282380 1.320000e-100 377.0
29 TraesCS6D01G293400 chr2B 87.725 334 26 7 333 651 693565646 693565979 4.760000e-100 375.0
30 TraesCS6D01G293400 chr4A 78.483 646 79 26 65 651 731452073 731451429 7.970000e-98 368.0
31 TraesCS6D01G293400 chr4A 85.593 354 35 8 313 651 723916185 723915833 1.720000e-94 357.0
32 TraesCS6D01G293400 chr5D 96.262 107 3 1 4930 5036 228058609 228058504 1.860000e-39 174.0
33 TraesCS6D01G293400 chr5D 95.192 104 4 1 4933 5036 301188730 301188628 4.030000e-36 163.0
34 TraesCS6D01G293400 chr3B 97.000 100 3 0 4937 5036 677856025 677855926 8.670000e-38 169.0
35 TraesCS6D01G293400 chr3B 93.458 107 6 1 4930 5036 543888602 543888497 1.880000e-34 158.0
36 TraesCS6D01G293400 chrUn 96.000 100 4 0 4937 5036 312499708 312499609 4.030000e-36 163.0
37 TraesCS6D01G293400 chrUn 92.784 97 6 1 4842 4938 234300572 234300477 6.800000e-29 139.0
38 TraesCS6D01G293400 chrUn 92.784 97 6 1 4842 4938 387880630 387880535 6.800000e-29 139.0
39 TraesCS6D01G293400 chr1B 95.098 102 4 1 4936 5036 349756358 349756459 5.220000e-35 159.0
40 TraesCS6D01G293400 chr7B 89.908 109 10 1 4842 4950 528017100 528017207 6.800000e-29 139.0
41 TraesCS6D01G293400 chr7A 91.837 98 7 1 4842 4939 566027831 566027927 8.790000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G293400 chr6D 404218206 404223241 5035 False 3173.333333 9300 96.2960 1 5036 3 chr6D.!!$F1 5035
1 TraesCS6D01G293400 chr6A 550731465 550738951 7486 False 961.000000 3027 88.9280 28 4770 5 chr6A.!!$F2 4742
2 TraesCS6D01G293400 chr6B 606285192 606290225 5033 False 532.450000 1393 92.0331 330 4938 10 chr6B.!!$F3 4608
3 TraesCS6D01G293400 chr7D 245368006 245368650 644 False 412.000000 412 79.7840 65 651 1 chr7D.!!$F1 586
4 TraesCS6D01G293400 chr1A 584795753 584796395 642 True 405.000000 405 79.5980 65 651 1 chr1A.!!$R2 586
5 TraesCS6D01G293400 chr1A 18855392 18856036 644 True 387.000000 387 79.0770 65 654 1 chr1A.!!$R1 589
6 TraesCS6D01G293400 chr4B 217281738 217282380 642 False 377.000000 377 78.7600 65 651 1 chr4B.!!$F1 586
7 TraesCS6D01G293400 chr4A 731451429 731452073 644 True 368.000000 368 78.4830 65 651 1 chr4A.!!$R2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.170339 CGCAGACATGAGACCGTGTA 59.830 55.0 0.0 0.0 42.24 2.90 F
698 962 0.482446 TGGAAATTGGCTGTGGGTCT 59.518 50.0 0.0 0.0 0.00 3.85 F
2434 5649 0.175989 CCTTCACCCCTTCTCTACGC 59.824 60.0 0.0 0.0 0.00 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 1542 0.179240 CAGCGATTCAAGTGCGACAC 60.179 55.0 2.28 2.28 34.10 3.67 R
2464 5679 0.685097 AGCGCTAAACCCTGAGTTCA 59.315 50.0 8.99 0.00 37.88 3.18 R
4236 7478 0.035439 GATCACGAAAGCCCCCTCAA 60.035 55.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.823276 CTCCCGCAGACATGAGAC 57.177 61.111 0.00 0.00 0.00 3.36
18 19 1.142748 CTCCCGCAGACATGAGACC 59.857 63.158 0.00 0.00 0.00 3.85
19 20 2.202797 CCCGCAGACATGAGACCG 60.203 66.667 0.00 0.00 0.00 4.79
20 21 2.573869 CCGCAGACATGAGACCGT 59.426 61.111 0.00 0.00 0.00 4.83
21 22 1.807165 CCGCAGACATGAGACCGTG 60.807 63.158 0.00 0.00 35.46 4.94
22 23 1.080501 CGCAGACATGAGACCGTGT 60.081 57.895 0.00 0.00 44.67 4.49
23 24 0.170339 CGCAGACATGAGACCGTGTA 59.830 55.000 0.00 0.00 42.24 2.90
24 25 1.795525 CGCAGACATGAGACCGTGTAG 60.796 57.143 0.00 0.00 42.24 2.74
25 26 1.469940 GCAGACATGAGACCGTGTAGG 60.470 57.143 0.00 0.00 42.24 3.18
26 27 2.092323 CAGACATGAGACCGTGTAGGA 58.908 52.381 0.00 0.00 42.24 2.94
42 43 6.595716 CCGTGTAGGAAAATTTCTCTTGATCT 59.404 38.462 5.65 0.00 45.00 2.75
74 75 5.906113 TTCTTTCACTTGTTTGTGCCTTA 57.094 34.783 0.00 0.00 37.81 2.69
109 111 6.959639 TTCTTTCCATATAACTGAATGCCC 57.040 37.500 0.00 0.00 0.00 5.36
191 252 6.073167 TCACAGTGAAGAACTCTACTTCTACG 60.073 42.308 0.00 0.00 42.63 3.51
276 338 2.089980 AGCAGCAATCTAGCAACCTTG 58.910 47.619 0.00 0.00 36.85 3.61
300 362 5.982516 GCAGGTCAGTTCATCTAGTAATCTG 59.017 44.000 0.00 0.00 0.00 2.90
311 390 7.267857 TCATCTAGTAATCTGGTGTTGATGTG 58.732 38.462 0.00 0.00 32.99 3.21
325 404 7.231519 TGGTGTTGATGTGTTTATACCATGAAA 59.768 33.333 0.00 0.00 32.47 2.69
326 405 7.754924 GGTGTTGATGTGTTTATACCATGAAAG 59.245 37.037 0.00 0.00 0.00 2.62
327 406 7.273381 GTGTTGATGTGTTTATACCATGAAAGC 59.727 37.037 0.00 0.00 0.00 3.51
328 407 6.449635 TGATGTGTTTATACCATGAAAGCC 57.550 37.500 0.00 0.00 0.00 4.35
331 410 4.947388 TGTGTTTATACCATGAAAGCCCTC 59.053 41.667 0.00 0.00 0.00 4.30
526 773 2.159761 ACATTCGTTATTGCGTTCCACG 60.160 45.455 0.00 0.00 45.88 4.94
557 808 2.560504 TGAGGTTGCTACTGTGTTGTG 58.439 47.619 0.00 0.00 0.00 3.33
688 943 4.196626 ACATTCTGTGCATGGAAATTGG 57.803 40.909 8.07 2.98 0.00 3.16
690 945 1.927487 TCTGTGCATGGAAATTGGCT 58.073 45.000 0.00 0.00 0.00 4.75
691 946 1.546923 TCTGTGCATGGAAATTGGCTG 59.453 47.619 0.00 0.00 0.00 4.85
692 947 1.274167 CTGTGCATGGAAATTGGCTGT 59.726 47.619 0.00 0.00 0.00 4.40
698 962 0.482446 TGGAAATTGGCTGTGGGTCT 59.518 50.000 0.00 0.00 0.00 3.85
699 963 1.177401 GGAAATTGGCTGTGGGTCTC 58.823 55.000 0.00 0.00 0.00 3.36
718 982 5.181748 GTCTCTGGAAATAAGTCTGCACAT 58.818 41.667 0.00 0.00 0.00 3.21
719 983 5.645497 GTCTCTGGAAATAAGTCTGCACATT 59.355 40.000 0.00 0.00 0.00 2.71
721 985 4.156556 TCTGGAAATAAGTCTGCACATTGC 59.843 41.667 0.00 0.00 45.29 3.56
722 986 4.081406 TGGAAATAAGTCTGCACATTGCT 58.919 39.130 0.00 0.00 45.31 3.91
723 987 4.523943 TGGAAATAAGTCTGCACATTGCTT 59.476 37.500 0.00 0.00 45.31 3.91
724 988 5.010922 TGGAAATAAGTCTGCACATTGCTTT 59.989 36.000 0.00 0.00 45.31 3.51
725 989 5.346822 GGAAATAAGTCTGCACATTGCTTTG 59.653 40.000 0.00 0.00 45.31 2.77
726 990 5.458041 AATAAGTCTGCACATTGCTTTGT 57.542 34.783 0.00 0.00 45.31 2.83
727 991 6.573664 AATAAGTCTGCACATTGCTTTGTA 57.426 33.333 0.00 0.00 45.31 2.41
728 992 3.904136 AGTCTGCACATTGCTTTGTAC 57.096 42.857 0.00 0.00 45.31 2.90
729 993 3.213506 AGTCTGCACATTGCTTTGTACA 58.786 40.909 0.00 0.00 45.31 2.90
732 996 5.473162 AGTCTGCACATTGCTTTGTACATTA 59.527 36.000 0.00 0.00 45.31 1.90
733 997 6.016360 AGTCTGCACATTGCTTTGTACATTAA 60.016 34.615 0.00 0.00 45.31 1.40
734 998 6.640499 GTCTGCACATTGCTTTGTACATTAAA 59.360 34.615 0.00 0.00 45.31 1.52
738 1002 9.650539 TGCACATTGCTTTGTACATTAAATAAT 57.349 25.926 0.00 0.00 45.31 1.28
833 1109 3.555586 GCAAGTTGCAAGATCCATGGTTT 60.556 43.478 22.90 0.00 44.26 3.27
835 1111 3.771216 AGTTGCAAGATCCATGGTTTCT 58.229 40.909 12.58 12.49 0.00 2.52
853 1129 3.170791 TCTTTGTCCGATCTGATCTGC 57.829 47.619 15.16 6.38 0.00 4.26
898 1194 3.198872 GCAGGTTTATCTTCTTCCTCCG 58.801 50.000 0.00 0.00 0.00 4.63
899 1195 3.118738 GCAGGTTTATCTTCTTCCTCCGA 60.119 47.826 0.00 0.00 0.00 4.55
911 1217 3.077556 CTCCGAGTCCCCACCCAG 61.078 72.222 0.00 0.00 0.00 4.45
950 1256 1.603172 CGTTGCTTCCACTCGTTCTCT 60.603 52.381 0.00 0.00 0.00 3.10
951 1257 1.795286 GTTGCTTCCACTCGTTCTCTG 59.205 52.381 0.00 0.00 0.00 3.35
952 1258 1.040646 TGCTTCCACTCGTTCTCTGT 58.959 50.000 0.00 0.00 0.00 3.41
953 1259 1.412710 TGCTTCCACTCGTTCTCTGTT 59.587 47.619 0.00 0.00 0.00 3.16
954 1260 2.158957 TGCTTCCACTCGTTCTCTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
955 1261 2.476997 GCTTCCACTCGTTCTCTGTTTC 59.523 50.000 0.00 0.00 0.00 2.78
956 1262 3.800604 GCTTCCACTCGTTCTCTGTTTCT 60.801 47.826 0.00 0.00 0.00 2.52
957 1263 3.644884 TCCACTCGTTCTCTGTTTCTC 57.355 47.619 0.00 0.00 0.00 2.87
958 1264 2.296471 TCCACTCGTTCTCTGTTTCTCC 59.704 50.000 0.00 0.00 0.00 3.71
959 1265 2.035961 CCACTCGTTCTCTGTTTCTCCA 59.964 50.000 0.00 0.00 0.00 3.86
1081 1388 4.394712 CCTTTGCCGCCTCCTCGT 62.395 66.667 0.00 0.00 0.00 4.18
1168 1475 1.334779 GGCGGCATAGTAGTACGTGAG 60.335 57.143 3.07 6.60 0.00 3.51
1219 1526 7.377398 AGCACAATACAATCTAACAAATTGCA 58.623 30.769 0.00 0.00 37.58 4.08
1221 1528 7.541783 GCACAATACAATCTAACAAATTGCAGA 59.458 33.333 0.00 0.00 37.58 4.26
1222 1529 9.577110 CACAATACAATCTAACAAATTGCAGAT 57.423 29.630 5.23 5.23 37.58 2.90
1232 1542 6.978343 AACAAATTGCAGATTCATTCATGG 57.022 33.333 0.00 0.00 0.00 3.66
1235 1545 5.670792 AATTGCAGATTCATTCATGGTGT 57.329 34.783 0.00 0.00 0.00 4.16
1236 1546 4.707030 TTGCAGATTCATTCATGGTGTC 57.293 40.909 0.00 0.00 0.00 3.67
1243 1553 1.805943 TCATTCATGGTGTCGCACTTG 59.194 47.619 9.31 7.96 34.40 3.16
1247 1557 2.076100 TCATGGTGTCGCACTTGAATC 58.924 47.619 9.31 0.00 34.40 2.52
1253 1563 2.276244 CGCACTTGAATCGCTGCG 60.276 61.111 17.25 17.25 45.67 5.18
1258 1568 2.223021 GCACTTGAATCGCTGCGAATTA 60.223 45.455 29.48 15.03 39.99 1.40
1260 1570 2.351726 ACTTGAATCGCTGCGAATTACC 59.648 45.455 29.48 15.49 39.99 2.85
1275 1586 5.130519 CGAATTACCGTTAAGATGCATTCG 58.869 41.667 0.00 0.00 0.00 3.34
1298 1689 9.515020 TTCGTTCAATTAAAATGGAATAGATGC 57.485 29.630 0.00 0.00 31.39 3.91
1322 1716 6.036083 GCATCTAGTTGAAGCGATGTTCTTAA 59.964 38.462 4.94 0.00 36.52 1.85
1323 1717 7.254590 GCATCTAGTTGAAGCGATGTTCTTAAT 60.255 37.037 4.94 0.00 36.52 1.40
1325 1719 7.097192 TCTAGTTGAAGCGATGTTCTTAATGT 58.903 34.615 0.00 0.00 0.00 2.71
1327 1721 6.970484 AGTTGAAGCGATGTTCTTAATGTTT 58.030 32.000 0.00 0.00 0.00 2.83
1328 1722 7.425606 AGTTGAAGCGATGTTCTTAATGTTTT 58.574 30.769 0.00 0.00 0.00 2.43
1330 1724 9.176181 GTTGAAGCGATGTTCTTAATGTTTTTA 57.824 29.630 0.00 0.00 0.00 1.52
1332 1726 9.906660 TGAAGCGATGTTCTTAATGTTTTTATT 57.093 25.926 0.00 0.00 0.00 1.40
1365 2026 8.752254 GTTTTTAGTTTGCTGTATTTTCTGGTC 58.248 33.333 0.00 0.00 0.00 4.02
1374 2035 7.357951 GCTGTATTTTCTGGTCAGCTATATC 57.642 40.000 7.98 0.00 45.14 1.63
1409 2071 9.323963 GTTTTCCAAACATAACAACAACTTTTG 57.676 29.630 0.00 0.00 0.00 2.44
1505 2333 3.059393 CAGCACACCATACGCTCATATTG 60.059 47.826 0.00 0.00 32.48 1.90
1540 2369 7.302350 TGTTGATTGAGGTATATGTTTGACG 57.698 36.000 0.00 0.00 0.00 4.35
1550 2379 5.462398 GGTATATGTTTGACGTGGCTTCTAG 59.538 44.000 0.00 0.00 0.00 2.43
1558 2387 1.968493 ACGTGGCTTCTAGTTCCTGAA 59.032 47.619 0.00 0.00 0.00 3.02
1561 2390 3.368427 CGTGGCTTCTAGTTCCTGAATGA 60.368 47.826 0.00 0.00 0.00 2.57
1571 2400 4.184629 AGTTCCTGAATGACATCGTTAGC 58.815 43.478 0.00 0.00 0.00 3.09
1574 2403 1.258982 CTGAATGACATCGTTAGCCGC 59.741 52.381 0.00 0.00 36.19 6.53
1589 2430 6.523893 TCGTTAGCCGCAATTTACATTTTAAC 59.476 34.615 0.00 0.00 36.19 2.01
1596 2437 6.000542 CGCAATTTACATTTTAACGCACAAG 58.999 36.000 0.00 0.00 0.00 3.16
1597 2438 5.783169 GCAATTTACATTTTAACGCACAAGC 59.217 36.000 0.00 0.00 37.42 4.01
1638 2508 5.441709 ACACAACCTAAACCATAAAACGG 57.558 39.130 0.00 0.00 0.00 4.44
1647 2692 8.215736 ACCTAAACCATAAAACGGCTATTCTAT 58.784 33.333 0.00 0.00 0.00 1.98
1722 2768 4.464951 ACACAGTTCAATATCCACGGACTA 59.535 41.667 0.00 0.00 0.00 2.59
1723 2769 5.128827 ACACAGTTCAATATCCACGGACTAT 59.871 40.000 0.00 0.00 0.00 2.12
1724 2770 5.463392 CACAGTTCAATATCCACGGACTATG 59.537 44.000 0.00 0.00 0.00 2.23
1725 2771 5.128827 ACAGTTCAATATCCACGGACTATGT 59.871 40.000 0.00 0.00 0.00 2.29
1726 2772 6.049149 CAGTTCAATATCCACGGACTATGTT 58.951 40.000 0.00 0.00 0.00 2.71
1727 2773 6.018751 CAGTTCAATATCCACGGACTATGTTG 60.019 42.308 0.00 0.00 0.00 3.33
1728 2774 5.862678 TCAATATCCACGGACTATGTTGA 57.137 39.130 0.00 0.00 0.00 3.18
1729 2775 5.842907 TCAATATCCACGGACTATGTTGAG 58.157 41.667 0.00 0.00 0.00 3.02
1730 2776 5.362717 TCAATATCCACGGACTATGTTGAGT 59.637 40.000 0.00 0.00 0.00 3.41
1731 2777 3.802948 ATCCACGGACTATGTTGAGTC 57.197 47.619 0.00 0.00 44.39 3.36
1732 2778 2.803956 TCCACGGACTATGTTGAGTCT 58.196 47.619 3.76 0.00 44.50 3.24
1733 2779 3.959293 TCCACGGACTATGTTGAGTCTA 58.041 45.455 3.76 0.00 44.50 2.59
1734 2780 3.945921 TCCACGGACTATGTTGAGTCTAG 59.054 47.826 3.76 1.91 44.50 2.43
1735 2781 3.945921 CCACGGACTATGTTGAGTCTAGA 59.054 47.826 3.76 0.00 44.50 2.43
1736 2782 4.398358 CCACGGACTATGTTGAGTCTAGAA 59.602 45.833 0.00 0.00 44.50 2.10
1737 2783 5.067936 CCACGGACTATGTTGAGTCTAGAAT 59.932 44.000 0.00 0.00 44.50 2.40
1738 2784 6.262496 CCACGGACTATGTTGAGTCTAGAATA 59.738 42.308 0.00 0.00 44.50 1.75
1739 2785 7.356540 CACGGACTATGTTGAGTCTAGAATAG 58.643 42.308 0.00 0.00 44.50 1.73
1740 2786 7.012515 CACGGACTATGTTGAGTCTAGAATAGT 59.987 40.741 10.83 10.83 44.50 2.12
1741 2787 7.012515 ACGGACTATGTTGAGTCTAGAATAGTG 59.987 40.741 14.43 6.55 44.50 2.74
1742 2788 7.226918 CGGACTATGTTGAGTCTAGAATAGTGA 59.773 40.741 14.43 0.00 44.50 3.41
1743 2789 8.904834 GGACTATGTTGAGTCTAGAATAGTGAA 58.095 37.037 14.43 0.00 44.50 3.18
1784 2830 7.764695 TGTATAACACAGTTCAATATCCACG 57.235 36.000 0.00 0.00 31.89 4.94
1785 2831 6.759356 TGTATAACACAGTTCAATATCCACGG 59.241 38.462 0.00 0.00 31.89 4.94
1786 2832 2.985896 ACACAGTTCAATATCCACGGG 58.014 47.619 0.00 0.00 0.00 5.28
1787 2833 1.670811 CACAGTTCAATATCCACGGGC 59.329 52.381 0.00 0.00 0.00 6.13
1788 2834 1.559682 ACAGTTCAATATCCACGGGCT 59.440 47.619 0.00 0.00 0.00 5.19
1836 2882 8.038944 TCGTAAAAATAGGCTTATCAACTCACT 58.961 33.333 0.00 0.00 0.00 3.41
1928 2974 9.023962 ACTCATTCAATTTACAGCTAAAATCCA 57.976 29.630 6.66 0.00 0.00 3.41
1994 3041 5.902613 ACACAATGAAATGGGTACATGAG 57.097 39.130 0.00 0.00 34.48 2.90
2001 3048 6.806668 TGAAATGGGTACATGAGAGTGATA 57.193 37.500 0.00 0.00 37.40 2.15
2048 3095 9.234384 CACGTACAATCATCTAGTTTAAGGTAG 57.766 37.037 0.00 0.00 0.00 3.18
2163 5327 0.696501 TACAGGGGAAACTCTTGGGC 59.303 55.000 0.00 0.00 38.96 5.36
2425 5631 4.371231 CCCTCCCCCTTCACCCCT 62.371 72.222 0.00 0.00 0.00 4.79
2426 5632 2.204306 CCTCCCCCTTCACCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
2433 5648 0.824759 CCCTTCACCCCTTCTCTACG 59.175 60.000 0.00 0.00 0.00 3.51
2434 5649 0.175989 CCTTCACCCCTTCTCTACGC 59.824 60.000 0.00 0.00 0.00 4.42
2464 5679 0.106167 TTCCCTGGATCCGTCGAGAT 60.106 55.000 7.39 0.00 32.46 2.75
2470 5685 1.676529 TGGATCCGTCGAGATGAACTC 59.323 52.381 7.39 0.00 41.79 3.01
2471 5686 1.676529 GGATCCGTCGAGATGAACTCA 59.323 52.381 0.00 0.00 45.14 3.41
2475 5690 0.811915 CGTCGAGATGAACTCAGGGT 59.188 55.000 0.00 0.00 45.14 4.34
2529 5754 0.997196 GTGTCGATTAGGCGTTGGTC 59.003 55.000 0.00 0.00 0.00 4.02
2577 5802 3.963374 TGTAGCTGTCAGCCTAGATTCAT 59.037 43.478 21.32 1.96 43.77 2.57
2601 5826 2.642807 AGTGGTGCCAGTGTACCTTTAT 59.357 45.455 13.20 0.00 46.50 1.40
2610 5848 5.066505 GCCAGTGTACCTTTATCCATTTCTG 59.933 44.000 0.00 0.00 0.00 3.02
2624 5862 7.881775 ATCCATTTCTGGTAGATTTTGTACC 57.118 36.000 0.00 0.00 43.61 3.34
2649 5887 1.269723 GTTCTGTGCTGTTTAAGGGCC 59.730 52.381 0.00 0.00 0.00 5.80
2667 5905 2.400399 GCCGGCTAACTTTTGTTTTCC 58.600 47.619 22.15 0.00 43.32 3.13
2694 5932 2.270527 GCTCCTGCAGGGAAGGAC 59.729 66.667 32.23 11.78 44.58 3.85
2757 5995 8.050170 GCTAGTTTTCTTTGTTTTTCGTGATTG 58.950 33.333 0.00 0.00 0.00 2.67
2759 5997 6.871492 AGTTTTCTTTGTTTTTCGTGATTGGT 59.129 30.769 0.00 0.00 0.00 3.67
2831 6069 6.635522 CATTTATGTTTCCGTGTTTTGTGTG 58.364 36.000 0.00 0.00 0.00 3.82
2861 6100 1.134098 CACCGGGAAGGATTGTGCTAT 60.134 52.381 6.32 0.00 45.00 2.97
3001 6240 5.620879 GCCATTCTCTTTCAACATTGGTCTC 60.621 44.000 0.00 0.00 0.00 3.36
3010 6249 3.322541 TCAACATTGGTCTCGGTTCAGTA 59.677 43.478 0.00 0.00 0.00 2.74
3026 6265 6.173339 GGTTCAGTAATCAAAGGTGATCTCA 58.827 40.000 0.00 0.00 44.02 3.27
3043 6282 8.844244 GGTGATCTCATTATCAAAGTGCTATTT 58.156 33.333 0.00 0.00 37.61 1.40
3086 6325 6.894682 TGACCTGTATGTTATTGGCTCATAA 58.105 36.000 0.00 0.00 0.00 1.90
3098 6339 9.162764 GTTATTGGCTCATAAGTTAAGTTCAGA 57.837 33.333 0.00 0.00 0.00 3.27
3112 6353 9.588096 AGTTAAGTTCAGAAATAATCAAAGGGT 57.412 29.630 0.00 0.00 0.00 4.34
3113 6354 9.626045 GTTAAGTTCAGAAATAATCAAAGGGTG 57.374 33.333 0.00 0.00 0.00 4.61
3114 6355 7.839680 AAGTTCAGAAATAATCAAAGGGTGT 57.160 32.000 0.00 0.00 0.00 4.16
3115 6356 7.219484 AGTTCAGAAATAATCAAAGGGTGTG 57.781 36.000 0.00 0.00 0.00 3.82
3116 6357 5.643379 TCAGAAATAATCAAAGGGTGTGC 57.357 39.130 0.00 0.00 0.00 4.57
3117 6358 5.324409 TCAGAAATAATCAAAGGGTGTGCT 58.676 37.500 0.00 0.00 0.00 4.40
3125 6366 3.892284 TCAAAGGGTGTGCTTTTACTCA 58.108 40.909 0.00 0.00 0.00 3.41
3265 6506 5.904941 TCAATGCTCTTTGATTTGTGTTGT 58.095 33.333 0.00 0.00 30.82 3.32
3269 6510 4.202040 TGCTCTTTGATTTGTGTTGTGGAG 60.202 41.667 0.00 0.00 0.00 3.86
3272 6513 6.279513 TCTTTGATTTGTGTTGTGGAGTTT 57.720 33.333 0.00 0.00 0.00 2.66
3298 6539 5.903810 ACCATCGGAGTATCTACTGAAAAC 58.096 41.667 0.00 0.00 36.50 2.43
3435 6676 5.039920 TGCTGCTAACATCATAAGACCAT 57.960 39.130 0.00 0.00 0.00 3.55
3436 6677 5.439721 TGCTGCTAACATCATAAGACCATT 58.560 37.500 0.00 0.00 0.00 3.16
3500 6741 7.596494 ACATTTTTGATGACTTGTCCAGTATG 58.404 34.615 0.00 0.00 35.01 2.39
3559 6800 4.034742 GCAAGTGAACTTTCGGAACTAACA 59.965 41.667 0.00 0.00 33.11 2.41
3603 6844 1.055040 CAGGATGGGATGAGGGAGTC 58.945 60.000 0.00 0.00 0.00 3.36
3717 6958 6.867816 GTGTGTGGCAATTTCTTCATTGATTA 59.132 34.615 0.00 0.00 36.39 1.75
3958 7199 1.971357 CCCCAGACTACGCTTATGGAT 59.029 52.381 0.00 0.00 32.55 3.41
3960 7201 2.028930 CCCAGACTACGCTTATGGATCC 60.029 54.545 4.20 4.20 32.55 3.36
4118 7359 5.715434 ACCAAAATAATTGTAACGCCACT 57.285 34.783 0.00 0.00 0.00 4.00
4159 7400 2.596346 TGGTGATGTTCCAAGTGCATT 58.404 42.857 0.00 0.00 31.50 3.56
4191 7433 6.120220 ACTTTGGAACCCTATTATCCTTTCG 58.880 40.000 0.00 0.00 34.24 3.46
4192 7434 4.699925 TGGAACCCTATTATCCTTTCGG 57.300 45.455 0.00 0.00 34.24 4.30
4193 7435 4.300345 TGGAACCCTATTATCCTTTCGGA 58.700 43.478 0.00 0.00 45.16 4.55
4203 7445 2.544844 TCCTTTCGGATCCTGGTACT 57.455 50.000 10.75 0.00 33.30 2.73
4204 7446 3.675348 TCCTTTCGGATCCTGGTACTA 57.325 47.619 10.75 0.00 33.30 1.82
4205 7447 3.563223 TCCTTTCGGATCCTGGTACTAG 58.437 50.000 10.75 0.00 33.30 2.57
4206 7448 3.053095 TCCTTTCGGATCCTGGTACTAGT 60.053 47.826 10.75 0.00 33.30 2.57
4207 7449 3.705072 CCTTTCGGATCCTGGTACTAGTT 59.295 47.826 10.75 0.00 0.00 2.24
4208 7450 4.161754 CCTTTCGGATCCTGGTACTAGTTT 59.838 45.833 10.75 0.00 0.00 2.66
4209 7451 4.996788 TTCGGATCCTGGTACTAGTTTC 57.003 45.455 10.75 1.79 0.00 2.78
4210 7452 4.246712 TCGGATCCTGGTACTAGTTTCT 57.753 45.455 10.75 0.00 0.00 2.52
4211 7453 3.952323 TCGGATCCTGGTACTAGTTTCTG 59.048 47.826 10.75 6.79 0.00 3.02
4212 7454 3.068307 CGGATCCTGGTACTAGTTTCTGG 59.932 52.174 10.75 7.63 0.00 3.86
4213 7455 3.388350 GGATCCTGGTACTAGTTTCTGGG 59.612 52.174 3.84 0.00 0.00 4.45
4214 7456 3.555117 TCCTGGTACTAGTTTCTGGGT 57.445 47.619 0.00 0.00 0.00 4.51
4215 7457 3.170717 TCCTGGTACTAGTTTCTGGGTG 58.829 50.000 0.00 0.00 0.00 4.61
4216 7458 2.354805 CCTGGTACTAGTTTCTGGGTGC 60.355 54.545 0.00 0.00 0.00 5.01
4217 7459 1.626825 TGGTACTAGTTTCTGGGTGCC 59.373 52.381 0.00 0.00 35.54 5.01
4218 7460 1.065636 GGTACTAGTTTCTGGGTGCCC 60.066 57.143 0.00 0.00 0.00 5.36
4219 7461 1.907255 GTACTAGTTTCTGGGTGCCCT 59.093 52.381 0.00 0.00 36.94 5.19
4220 7462 1.446016 ACTAGTTTCTGGGTGCCCTT 58.554 50.000 8.91 0.00 36.94 3.95
4221 7463 1.073923 ACTAGTTTCTGGGTGCCCTTG 59.926 52.381 8.91 2.01 36.94 3.61
4222 7464 1.073923 CTAGTTTCTGGGTGCCCTTGT 59.926 52.381 8.91 0.00 36.94 3.16
4223 7465 0.261696 AGTTTCTGGGTGCCCTTGTT 59.738 50.000 8.91 0.00 36.94 2.83
4224 7466 0.389025 GTTTCTGGGTGCCCTTGTTG 59.611 55.000 8.91 0.00 36.94 3.33
4225 7467 1.398958 TTTCTGGGTGCCCTTGTTGC 61.399 55.000 8.91 0.00 36.94 4.17
4226 7468 2.521465 CTGGGTGCCCTTGTTGCA 60.521 61.111 8.91 0.00 36.94 4.08
4227 7469 2.042537 TGGGTGCCCTTGTTGCAA 60.043 55.556 8.91 0.00 41.06 4.08
4228 7470 1.684386 CTGGGTGCCCTTGTTGCAAA 61.684 55.000 0.00 0.00 41.06 3.68
4229 7471 1.267574 TGGGTGCCCTTGTTGCAAAA 61.268 50.000 0.00 0.00 41.06 2.44
4230 7472 0.108396 GGGTGCCCTTGTTGCAAAAT 59.892 50.000 0.00 0.00 41.06 1.82
4231 7473 1.476652 GGGTGCCCTTGTTGCAAAATT 60.477 47.619 0.00 0.00 41.06 1.82
4232 7474 2.296792 GGTGCCCTTGTTGCAAAATTT 58.703 42.857 0.00 0.00 41.06 1.82
4233 7475 3.471680 GGTGCCCTTGTTGCAAAATTTA 58.528 40.909 0.00 0.00 41.06 1.40
4234 7476 3.249799 GGTGCCCTTGTTGCAAAATTTAC 59.750 43.478 0.00 0.00 41.06 2.01
4235 7477 3.059935 GTGCCCTTGTTGCAAAATTTACG 60.060 43.478 0.00 0.00 41.06 3.18
4236 7478 3.127589 GCCCTTGTTGCAAAATTTACGT 58.872 40.909 0.00 0.00 0.00 3.57
4237 7479 3.558006 GCCCTTGTTGCAAAATTTACGTT 59.442 39.130 0.00 0.00 0.00 3.99
4238 7480 4.551797 GCCCTTGTTGCAAAATTTACGTTG 60.552 41.667 0.00 0.00 0.00 4.10
4239 7481 4.806247 CCCTTGTTGCAAAATTTACGTTGA 59.194 37.500 0.00 0.00 0.00 3.18
4240 7482 5.051106 CCCTTGTTGCAAAATTTACGTTGAG 60.051 40.000 0.00 0.00 0.00 3.02
4241 7483 5.051106 CCTTGTTGCAAAATTTACGTTGAGG 60.051 40.000 0.00 0.00 0.00 3.86
4242 7484 4.363999 TGTTGCAAAATTTACGTTGAGGG 58.636 39.130 0.00 0.00 0.00 4.30
4243 7485 3.651803 TGCAAAATTTACGTTGAGGGG 57.348 42.857 0.00 0.00 0.00 4.79
4244 7486 2.297597 TGCAAAATTTACGTTGAGGGGG 59.702 45.455 0.00 0.00 0.00 5.40
4245 7487 2.929161 GCAAAATTTACGTTGAGGGGGC 60.929 50.000 0.00 0.00 0.00 5.80
4246 7488 2.560981 CAAAATTTACGTTGAGGGGGCT 59.439 45.455 0.00 0.00 0.00 5.19
4247 7489 2.597578 AATTTACGTTGAGGGGGCTT 57.402 45.000 0.00 0.00 0.00 4.35
4248 7490 2.597578 ATTTACGTTGAGGGGGCTTT 57.402 45.000 0.00 0.00 0.00 3.51
4249 7491 1.900245 TTTACGTTGAGGGGGCTTTC 58.100 50.000 0.00 0.00 0.00 2.62
4274 7993 5.046520 GTGATCCTGGTACTAAGTTTCTGGT 60.047 44.000 0.00 0.00 0.00 4.00
4301 8020 4.735822 CCTTGTCGCAAAATTTACGTTGAA 59.264 37.500 11.82 0.00 0.00 2.69
4306 8025 3.322369 GCAAAATTTACGTTGAAGGGGG 58.678 45.455 0.00 0.00 0.00 5.40
4307 8026 3.243941 GCAAAATTTACGTTGAAGGGGGT 60.244 43.478 0.00 0.00 0.00 4.95
4308 8027 4.552355 CAAAATTTACGTTGAAGGGGGTC 58.448 43.478 0.00 0.00 0.00 4.46
4309 8028 2.502142 ATTTACGTTGAAGGGGGTCC 57.498 50.000 0.00 0.00 0.00 4.46
4340 8059 1.694696 GGGGATCAAGAGATAGCGGTT 59.305 52.381 0.00 0.00 33.72 4.44
4342 8061 2.103263 GGGATCAAGAGATAGCGGTTGT 59.897 50.000 0.00 0.00 33.72 3.32
4352 8071 0.391130 TAGCGGTTGTGTGATCCTGC 60.391 55.000 0.00 0.00 0.00 4.85
4363 8082 2.208431 GTGATCCTGCTTGAATCCTCG 58.792 52.381 0.00 0.00 0.00 4.63
4379 8098 1.075226 TCGGCTTCCCTATGAGCCT 60.075 57.895 12.06 0.00 44.65 4.58
4384 8103 0.605589 CTTCCCTATGAGCCTAGCCG 59.394 60.000 0.00 0.00 0.00 5.52
4392 8111 0.685097 TGAGCCTAGCCGACAGTTTT 59.315 50.000 0.00 0.00 0.00 2.43
4425 8144 0.161024 CAGTTCGTTCGCTCGTTTCC 59.839 55.000 0.00 0.00 0.00 3.13
4436 8155 1.860676 CTCGTTTCCCTCGTTCACAA 58.139 50.000 0.00 0.00 0.00 3.33
4486 8205 5.629020 TCGTCTAATTTGCTGTGAATTTTGC 59.371 36.000 0.00 0.00 0.00 3.68
4514 8233 2.229784 CTGAGTTCCAATGCCCAGAAAC 59.770 50.000 0.00 0.00 0.00 2.78
4517 8236 2.827921 AGTTCCAATGCCCAGAAACATC 59.172 45.455 0.00 0.00 0.00 3.06
4585 8304 8.193438 CACACAGATAAGTCTCATCACATTCTA 58.807 37.037 0.00 0.00 30.42 2.10
4586 8305 8.922237 ACACAGATAAGTCTCATCACATTCTAT 58.078 33.333 0.00 0.00 30.42 1.98
4587 8306 9.761504 CACAGATAAGTCTCATCACATTCTATT 57.238 33.333 0.00 0.00 30.42 1.73
4623 8342 2.094442 TCTCGTCACATTCCGCACATTA 60.094 45.455 0.00 0.00 0.00 1.90
4631 8350 4.096231 CACATTCCGCACATTATCCTGAAA 59.904 41.667 0.00 0.00 0.00 2.69
4650 8369 4.080582 TGAAAGGAAAACAGAGTCTGGACA 60.081 41.667 23.79 7.48 35.51 4.02
4656 8405 0.683973 ACAGAGTCTGGACAGGCAAG 59.316 55.000 23.79 0.00 34.98 4.01
4688 8437 5.068198 ACTGATGTTGAAAAACACATCTGCT 59.932 36.000 15.20 4.71 38.21 4.24
4689 8438 5.522456 TGATGTTGAAAAACACATCTGCTC 58.478 37.500 12.28 0.00 37.62 4.26
4738 8487 5.420104 AGGATTACAAAGAGGATTTGGCAAG 59.580 40.000 0.00 0.00 33.92 4.01
4747 8496 2.027385 GGATTTGGCAAGGGCTAGAAG 58.973 52.381 0.00 0.00 40.87 2.85
4764 8513 4.889832 AGAAGAGCAAAAGACACACTTG 57.110 40.909 0.00 0.00 38.98 3.16
4765 8514 4.517285 AGAAGAGCAAAAGACACACTTGA 58.483 39.130 0.00 0.00 38.98 3.02
4770 8519 6.095377 AGAGCAAAAGACACACTTGAAAAAG 58.905 36.000 0.00 0.00 38.98 2.27
4771 8520 6.024552 AGCAAAAGACACACTTGAAAAAGA 57.975 33.333 0.00 0.00 38.98 2.52
4772 8521 6.454795 AGCAAAAGACACACTTGAAAAAGAA 58.545 32.000 0.00 0.00 38.98 2.52
4776 8525 8.977505 CAAAAGACACACTTGAAAAAGAAAAGA 58.022 29.630 0.00 0.00 38.98 2.52
4777 8526 8.748380 AAAGACACACTTGAAAAAGAAAAGAG 57.252 30.769 0.00 0.00 38.98 2.85
4826 8575 0.673644 AAGAATTGACAGGGACCGCG 60.674 55.000 0.00 0.00 0.00 6.46
4827 8576 1.375523 GAATTGACAGGGACCGCGT 60.376 57.895 4.92 0.00 0.00 6.01
4919 8723 2.721167 CCCTCTTGATCGGCCGTCA 61.721 63.158 27.15 23.72 0.00 4.35
4938 8742 1.066645 CAACCCCGTCCAGGTAAGTAC 60.067 57.143 0.00 0.00 36.27 2.73
4939 8743 0.411058 ACCCCGTCCAGGTAAGTACT 59.589 55.000 0.00 0.00 35.24 2.73
4940 8744 1.109609 CCCCGTCCAGGTAAGTACTC 58.890 60.000 0.00 0.00 38.74 2.59
4941 8745 1.109609 CCCGTCCAGGTAAGTACTCC 58.890 60.000 0.00 0.00 38.74 3.85
4942 8746 1.109609 CCGTCCAGGTAAGTACTCCC 58.890 60.000 0.00 0.00 34.51 4.30
4943 8747 1.341778 CCGTCCAGGTAAGTACTCCCT 60.342 57.143 7.99 7.99 34.51 4.20
4944 8748 2.022934 CGTCCAGGTAAGTACTCCCTC 58.977 57.143 10.38 1.33 0.00 4.30
4945 8749 2.386779 GTCCAGGTAAGTACTCCCTCC 58.613 57.143 10.38 4.73 0.00 4.30
4946 8750 1.064166 TCCAGGTAAGTACTCCCTCCG 60.064 57.143 10.38 5.37 0.00 4.63
4947 8751 1.341778 CCAGGTAAGTACTCCCTCCGT 60.342 57.143 10.38 0.00 0.00 4.69
4948 8752 2.454538 CAGGTAAGTACTCCCTCCGTT 58.545 52.381 10.38 0.00 0.00 4.44
4949 8753 2.426381 CAGGTAAGTACTCCCTCCGTTC 59.574 54.545 10.38 0.00 0.00 3.95
4950 8754 1.753649 GGTAAGTACTCCCTCCGTTCC 59.246 57.143 0.00 0.00 0.00 3.62
4951 8755 2.450476 GTAAGTACTCCCTCCGTTCCA 58.550 52.381 0.00 0.00 0.00 3.53
4952 8756 2.249309 AAGTACTCCCTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
4953 8757 3.393426 AAGTACTCCCTCCGTTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
4954 8758 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
4955 8759 3.924922 AGTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
4956 8760 3.641906 AGTACTCCCTCCGTTCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
4957 8761 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
4958 8762 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
4959 8763 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
4960 8764 3.641906 CTCCCTCCGTTCCATAATGTAGT 59.358 47.826 0.00 0.00 0.00 2.73
4961 8765 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
4962 8766 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
4963 8767 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
4964 8768 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
4965 8769 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
4966 8770 4.056050 CCGTTCCATAATGTAGTGCCTAC 58.944 47.826 5.65 5.65 37.46 3.18
5004 8808 9.495572 AAATTCAAACTTTACAAACTTTGACCA 57.504 25.926 8.55 0.00 33.51 4.02
5005 8809 9.495572 AATTCAAACTTTACAAACTTTGACCAA 57.504 25.926 8.55 0.00 33.51 3.67
5006 8810 8.527567 TTCAAACTTTACAAACTTTGACCAAG 57.472 30.769 8.55 8.83 33.51 3.61
5021 8825 9.628500 ACTTTGACCAAGTTTATAGAGAAAACT 57.372 29.630 0.00 0.00 43.89 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.142748 GGTCTCATGTCTGCGGGAG 59.857 63.158 0.00 0.00 0.00 4.30
1 2 2.710902 CGGTCTCATGTCTGCGGGA 61.711 63.158 0.00 0.00 0.00 5.14
2 3 2.202797 CGGTCTCATGTCTGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
3 4 1.807165 CACGGTCTCATGTCTGCGG 60.807 63.158 0.00 0.00 0.00 5.69
4 5 0.170339 TACACGGTCTCATGTCTGCG 59.830 55.000 0.00 0.00 0.00 5.18
5 6 1.469940 CCTACACGGTCTCATGTCTGC 60.470 57.143 0.00 0.00 0.00 4.26
6 7 2.092323 TCCTACACGGTCTCATGTCTG 58.908 52.381 0.00 0.00 0.00 3.51
7 8 2.509166 TCCTACACGGTCTCATGTCT 57.491 50.000 0.00 0.00 0.00 3.41
8 9 3.587797 TTTCCTACACGGTCTCATGTC 57.412 47.619 0.00 0.00 0.00 3.06
9 10 4.553330 ATTTTCCTACACGGTCTCATGT 57.447 40.909 0.00 0.00 0.00 3.21
10 11 5.643777 AGAAATTTTCCTACACGGTCTCATG 59.356 40.000 5.52 0.00 0.00 3.07
11 12 5.805728 AGAAATTTTCCTACACGGTCTCAT 58.194 37.500 5.52 0.00 0.00 2.90
12 13 5.011738 AGAGAAATTTTCCTACACGGTCTCA 59.988 40.000 5.52 0.00 32.58 3.27
13 14 5.480205 AGAGAAATTTTCCTACACGGTCTC 58.520 41.667 5.52 0.00 31.10 3.36
14 15 5.485209 AGAGAAATTTTCCTACACGGTCT 57.515 39.130 5.52 0.00 0.00 3.85
15 16 5.699458 TCAAGAGAAATTTTCCTACACGGTC 59.301 40.000 5.52 0.00 0.00 4.79
16 17 5.617252 TCAAGAGAAATTTTCCTACACGGT 58.383 37.500 5.52 0.00 0.00 4.83
17 18 6.595716 AGATCAAGAGAAATTTTCCTACACGG 59.404 38.462 5.52 0.00 0.00 4.94
18 19 7.118390 ACAGATCAAGAGAAATTTTCCTACACG 59.882 37.037 5.52 0.00 0.00 4.49
19 20 8.329203 ACAGATCAAGAGAAATTTTCCTACAC 57.671 34.615 5.52 0.00 0.00 2.90
22 23 9.151471 CGTTACAGATCAAGAGAAATTTTCCTA 57.849 33.333 5.52 0.00 0.00 2.94
23 24 7.361286 GCGTTACAGATCAAGAGAAATTTTCCT 60.361 37.037 5.52 0.69 0.00 3.36
24 25 6.743172 GCGTTACAGATCAAGAGAAATTTTCC 59.257 38.462 5.52 0.00 0.00 3.13
25 26 7.298122 TGCGTTACAGATCAAGAGAAATTTTC 58.702 34.615 0.66 0.66 0.00 2.29
26 27 7.202016 TGCGTTACAGATCAAGAGAAATTTT 57.798 32.000 0.00 0.00 0.00 1.82
42 43 5.493133 ACAAGTGAAAGAAATGCGTTACA 57.507 34.783 0.00 0.00 0.00 2.41
109 111 5.067936 AGACATACTGAACAGTTCTATCCGG 59.932 44.000 14.51 0.00 42.54 5.14
191 252 7.573968 ATCAGACTCATTATAAGTTTTGGCC 57.426 36.000 0.00 0.00 0.00 5.36
276 338 5.982516 CAGATTACTAGATGAACTGACCTGC 59.017 44.000 0.00 0.00 0.00 4.85
277 339 6.097554 ACCAGATTACTAGATGAACTGACCTG 59.902 42.308 0.00 0.00 0.00 4.00
290 352 7.672983 AAACACATCAACACCAGATTACTAG 57.327 36.000 0.00 0.00 0.00 2.57
300 362 6.751514 TCATGGTATAAACACATCAACACC 57.248 37.500 0.00 0.00 0.00 4.16
311 390 3.564225 CCGAGGGCTTTCATGGTATAAAC 59.436 47.826 0.00 0.00 0.00 2.01
325 404 4.021925 GGCAACTGTCCGAGGGCT 62.022 66.667 0.00 0.00 0.00 5.19
484 731 1.071314 TGTTGGGTGGAGGATGGGTT 61.071 55.000 0.00 0.00 0.00 4.11
557 808 0.875059 GGCTTTGCACAGGAGTACAC 59.125 55.000 1.35 0.00 0.00 2.90
688 943 3.274288 CTTATTTCCAGAGACCCACAGC 58.726 50.000 0.00 0.00 0.00 4.40
690 945 4.020218 CAGACTTATTTCCAGAGACCCACA 60.020 45.833 0.00 0.00 0.00 4.17
691 946 4.508662 CAGACTTATTTCCAGAGACCCAC 58.491 47.826 0.00 0.00 0.00 4.61
692 947 3.055094 GCAGACTTATTTCCAGAGACCCA 60.055 47.826 0.00 0.00 0.00 4.51
698 962 4.156556 GCAATGTGCAGACTTATTTCCAGA 59.843 41.667 0.00 0.00 44.26 3.86
699 963 4.418392 GCAATGTGCAGACTTATTTCCAG 58.582 43.478 0.00 0.00 44.26 3.86
738 1002 6.533723 CCGTGTTTCAGCTGATAGTACAATAA 59.466 38.462 19.04 2.08 0.00 1.40
740 1004 4.870426 CCGTGTTTCAGCTGATAGTACAAT 59.130 41.667 19.04 0.00 0.00 2.71
741 1005 4.242475 CCGTGTTTCAGCTGATAGTACAA 58.758 43.478 19.04 4.53 0.00 2.41
742 1006 3.257375 ACCGTGTTTCAGCTGATAGTACA 59.743 43.478 19.04 15.84 0.00 2.90
743 1007 3.612860 CACCGTGTTTCAGCTGATAGTAC 59.387 47.826 19.04 13.24 0.00 2.73
744 1008 3.845178 CACCGTGTTTCAGCTGATAGTA 58.155 45.455 19.04 0.00 0.00 1.82
746 1010 1.394917 GCACCGTGTTTCAGCTGATAG 59.605 52.381 19.04 7.28 0.00 2.08
755 1030 2.635443 CCCCATGGCACCGTGTTTC 61.635 63.158 6.09 0.00 0.00 2.78
824 1099 2.940994 TCGGACAAAGAAACCATGGA 57.059 45.000 21.47 0.00 0.00 3.41
825 1100 3.127548 CAGATCGGACAAAGAAACCATGG 59.872 47.826 11.19 11.19 0.00 3.66
827 1102 4.286297 TCAGATCGGACAAAGAAACCAT 57.714 40.909 0.00 0.00 0.00 3.55
833 1109 2.762887 AGCAGATCAGATCGGACAAAGA 59.237 45.455 14.20 0.00 0.00 2.52
835 1111 3.616956 AAGCAGATCAGATCGGACAAA 57.383 42.857 14.20 0.00 0.00 2.83
871 1147 4.439289 GGAAGAAGATAAACCTGCATGTGC 60.439 45.833 0.00 0.00 42.50 4.57
872 1148 4.946157 AGGAAGAAGATAAACCTGCATGTG 59.054 41.667 0.00 0.00 0.00 3.21
873 1149 5.184892 AGGAAGAAGATAAACCTGCATGT 57.815 39.130 0.00 0.00 0.00 3.21
874 1150 4.578105 GGAGGAAGAAGATAAACCTGCATG 59.422 45.833 0.00 0.00 38.59 4.06
875 1151 4.684485 CGGAGGAAGAAGATAAACCTGCAT 60.684 45.833 0.00 0.00 38.63 3.96
876 1152 3.369471 CGGAGGAAGAAGATAAACCTGCA 60.369 47.826 0.00 0.00 38.63 4.41
877 1153 3.118738 TCGGAGGAAGAAGATAAACCTGC 60.119 47.826 0.00 0.00 36.10 4.85
878 1154 4.160626 ACTCGGAGGAAGAAGATAAACCTG 59.839 45.833 10.23 0.00 0.00 4.00
890 1186 2.359967 GGTGGGGACTCGGAGGAAG 61.360 68.421 10.23 0.00 0.00 3.46
898 1194 3.721706 CCTGCTGGGTGGGGACTC 61.722 72.222 0.71 0.00 0.00 3.36
950 1256 7.255977 CGGATAAGAGGAAGATATGGAGAAACA 60.256 40.741 0.00 0.00 0.00 2.83
951 1257 7.093992 CGGATAAGAGGAAGATATGGAGAAAC 58.906 42.308 0.00 0.00 0.00 2.78
952 1258 6.295349 GCGGATAAGAGGAAGATATGGAGAAA 60.295 42.308 0.00 0.00 0.00 2.52
953 1259 5.186021 GCGGATAAGAGGAAGATATGGAGAA 59.814 44.000 0.00 0.00 0.00 2.87
954 1260 4.707448 GCGGATAAGAGGAAGATATGGAGA 59.293 45.833 0.00 0.00 0.00 3.71
955 1261 4.439426 CGCGGATAAGAGGAAGATATGGAG 60.439 50.000 0.00 0.00 0.00 3.86
956 1262 3.444034 CGCGGATAAGAGGAAGATATGGA 59.556 47.826 0.00 0.00 0.00 3.41
957 1263 3.775202 CGCGGATAAGAGGAAGATATGG 58.225 50.000 0.00 0.00 0.00 2.74
958 1264 3.182967 GCGCGGATAAGAGGAAGATATG 58.817 50.000 8.83 0.00 0.00 1.78
959 1265 2.166664 GGCGCGGATAAGAGGAAGATAT 59.833 50.000 8.83 0.00 0.00 1.63
1207 1514 7.762615 ACCATGAATGAATCTGCAATTTGTTAG 59.237 33.333 0.00 0.00 0.00 2.34
1219 1526 2.679837 GTGCGACACCATGAATGAATCT 59.320 45.455 0.00 0.00 0.00 2.40
1221 1528 2.715046 AGTGCGACACCATGAATGAAT 58.285 42.857 0.00 0.00 34.49 2.57
1222 1529 2.183478 AGTGCGACACCATGAATGAA 57.817 45.000 0.00 0.00 34.49 2.57
1223 1530 1.805943 CAAGTGCGACACCATGAATGA 59.194 47.619 0.00 0.00 34.49 2.57
1224 1531 1.805943 TCAAGTGCGACACCATGAATG 59.194 47.619 0.00 0.00 34.49 2.67
1227 1537 2.076100 GATTCAAGTGCGACACCATGA 58.924 47.619 0.00 8.49 34.49 3.07
1232 1542 0.179240 CAGCGATTCAAGTGCGACAC 60.179 55.000 2.28 2.28 34.10 3.67
1235 1545 3.168271 GCAGCGATTCAAGTGCGA 58.832 55.556 0.00 0.00 0.00 5.10
1243 1553 0.928229 ACGGTAATTCGCAGCGATTC 59.072 50.000 20.32 9.18 40.00 2.52
1247 1557 1.921887 TCTTAACGGTAATTCGCAGCG 59.078 47.619 9.06 9.06 42.33 5.18
1253 1563 6.044512 ACGAATGCATCTTAACGGTAATTC 57.955 37.500 0.00 0.00 0.00 2.17
1258 1568 3.331150 TGAACGAATGCATCTTAACGGT 58.669 40.909 0.00 0.00 0.00 4.83
1260 1570 7.946918 TTAATTGAACGAATGCATCTTAACG 57.053 32.000 0.00 4.28 0.00 3.18
1298 1689 7.525688 TTAAGAACATCGCTTCAACTAGATG 57.474 36.000 0.00 0.00 44.22 2.90
1337 1998 9.260002 CCAGAAAATACAGCAAACTAAAAACAT 57.740 29.630 0.00 0.00 0.00 2.71
1361 2022 3.457234 CAAAGCACGATATAGCTGACCA 58.543 45.455 0.00 0.00 41.70 4.02
1365 2026 4.882671 AAACCAAAGCACGATATAGCTG 57.117 40.909 0.00 0.00 41.70 4.24
1374 2035 2.611518 TGTTTGGAAAACCAAAGCACG 58.388 42.857 13.59 0.00 39.85 5.34
1529 2358 5.086104 ACTAGAAGCCACGTCAAACATAT 57.914 39.130 0.00 0.00 0.00 1.78
1540 2369 3.935828 GTCATTCAGGAACTAGAAGCCAC 59.064 47.826 0.00 0.00 36.02 5.01
1550 2379 3.309954 GGCTAACGATGTCATTCAGGAAC 59.690 47.826 0.00 0.00 0.00 3.62
1571 2400 4.383052 TGTGCGTTAAAATGTAAATTGCGG 59.617 37.500 0.00 0.00 0.00 5.69
1596 2437 6.023435 TGTGTATAATCGACGATAATACCGC 58.977 40.000 11.42 6.01 0.00 5.68
1597 2438 7.007725 GGTTGTGTATAATCGACGATAATACCG 59.992 40.741 11.42 0.00 0.00 4.02
1606 2476 5.806502 TGGTTTAGGTTGTGTATAATCGACG 59.193 40.000 0.00 0.00 0.00 5.12
1758 2804 8.826710 CGTGGATATTGAACTGTGTTATACAAT 58.173 33.333 0.00 0.00 39.20 2.71
1759 2805 7.279090 CCGTGGATATTGAACTGTGTTATACAA 59.721 37.037 0.00 0.00 39.20 2.41
1760 2806 6.759356 CCGTGGATATTGAACTGTGTTATACA 59.241 38.462 0.00 0.00 37.78 2.29
1761 2807 6.202188 CCCGTGGATATTGAACTGTGTTATAC 59.798 42.308 0.00 0.00 0.00 1.47
1762 2808 6.285224 CCCGTGGATATTGAACTGTGTTATA 58.715 40.000 0.00 0.00 0.00 0.98
1763 2809 5.123227 CCCGTGGATATTGAACTGTGTTAT 58.877 41.667 0.00 0.00 0.00 1.89
1764 2810 4.509616 CCCGTGGATATTGAACTGTGTTA 58.490 43.478 0.00 0.00 0.00 2.41
1765 2811 3.343617 CCCGTGGATATTGAACTGTGTT 58.656 45.455 0.00 0.00 0.00 3.32
1766 2812 2.939640 GCCCGTGGATATTGAACTGTGT 60.940 50.000 0.00 0.00 0.00 3.72
1767 2813 1.670811 GCCCGTGGATATTGAACTGTG 59.329 52.381 0.00 0.00 0.00 3.66
1768 2814 1.559682 AGCCCGTGGATATTGAACTGT 59.440 47.619 0.00 0.00 0.00 3.55
1769 2815 2.332063 AGCCCGTGGATATTGAACTG 57.668 50.000 0.00 0.00 0.00 3.16
1770 2816 3.391296 ACATAGCCCGTGGATATTGAACT 59.609 43.478 0.00 0.00 31.33 3.01
1771 2817 3.740115 ACATAGCCCGTGGATATTGAAC 58.260 45.455 0.00 0.00 31.33 3.18
1772 2818 3.554129 CGACATAGCCCGTGGATATTGAA 60.554 47.826 0.00 0.00 31.33 2.69
1773 2819 2.029380 CGACATAGCCCGTGGATATTGA 60.029 50.000 0.00 0.00 31.33 2.57
1774 2820 2.029380 TCGACATAGCCCGTGGATATTG 60.029 50.000 0.00 0.00 31.33 1.90
1775 2821 2.231478 CTCGACATAGCCCGTGGATATT 59.769 50.000 0.00 0.00 31.33 1.28
1776 2822 1.819288 CTCGACATAGCCCGTGGATAT 59.181 52.381 0.00 0.00 34.31 1.63
1777 2823 1.244816 CTCGACATAGCCCGTGGATA 58.755 55.000 0.00 0.00 0.00 2.59
1778 2824 0.755698 ACTCGACATAGCCCGTGGAT 60.756 55.000 0.00 0.00 0.00 3.41
1779 2825 1.379443 ACTCGACATAGCCCGTGGA 60.379 57.895 0.00 0.00 0.00 4.02
1780 2826 1.065928 GACTCGACATAGCCCGTGG 59.934 63.158 0.00 0.00 0.00 4.94
1781 2827 1.264557 CTAGACTCGACATAGCCCGTG 59.735 57.143 0.00 0.00 0.00 4.94
1782 2828 1.140452 TCTAGACTCGACATAGCCCGT 59.860 52.381 0.00 0.00 0.00 5.28
1783 2829 1.880271 TCTAGACTCGACATAGCCCG 58.120 55.000 0.00 0.00 0.00 6.13
1784 2830 5.247084 TCTATTCTAGACTCGACATAGCCC 58.753 45.833 0.00 0.00 0.00 5.19
1785 2831 6.821665 AGATCTATTCTAGACTCGACATAGCC 59.178 42.308 0.00 0.00 37.69 3.93
1786 2832 7.253983 CGAGATCTATTCTAGACTCGACATAGC 60.254 44.444 18.38 1.22 46.74 2.97
1787 2833 7.758076 ACGAGATCTATTCTAGACTCGACATAG 59.242 40.741 25.90 14.78 46.74 2.23
1788 2834 7.604549 ACGAGATCTATTCTAGACTCGACATA 58.395 38.462 25.90 7.15 46.74 2.29
1836 2882 2.441164 ACGTGGGGCAGTTGCAAA 60.441 55.556 0.00 0.00 44.36 3.68
1961 3008 7.559533 ACCCATTTCATTGTGTATGCTATTACA 59.440 33.333 0.00 0.00 34.06 2.41
2001 3048 7.745015 ACGTGAGCACAAATATTTTATACGTT 58.255 30.769 0.00 0.00 36.63 3.99
2075 4960 9.627123 TTTTGTAGATATGAGTCCCCATAAAAG 57.373 33.333 0.00 0.00 33.28 2.27
2131 5295 1.413077 CCCCTGTATCCTTTCTCGTCC 59.587 57.143 0.00 0.00 0.00 4.79
2305 5511 3.386078 TCTCCTTCTCGAATCCCATCTTG 59.614 47.826 0.00 0.00 0.00 3.02
2403 5609 1.229853 GTGAAGGGGGAGGGAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
2425 5631 4.995487 GGAAAAGAAAGAAGGCGTAGAGAA 59.005 41.667 0.00 0.00 0.00 2.87
2426 5632 4.562963 GGGAAAAGAAAGAAGGCGTAGAGA 60.563 45.833 0.00 0.00 0.00 3.10
2433 5648 2.876581 TCCAGGGAAAAGAAAGAAGGC 58.123 47.619 0.00 0.00 0.00 4.35
2434 5649 4.019858 GGATCCAGGGAAAAGAAAGAAGG 58.980 47.826 6.95 0.00 0.00 3.46
2464 5679 0.685097 AGCGCTAAACCCTGAGTTCA 59.315 50.000 8.99 0.00 37.88 3.18
2470 5685 1.766143 GCATCGAGCGCTAAACCCTG 61.766 60.000 11.50 3.62 0.00 4.45
2471 5686 1.521681 GCATCGAGCGCTAAACCCT 60.522 57.895 11.50 0.00 0.00 4.34
2577 5802 2.051692 AGGTACACTGGCACCACTAAA 58.948 47.619 0.00 0.00 37.28 1.85
2601 5826 7.027874 AGGTACAAAATCTACCAGAAATGGA 57.972 36.000 0.31 0.00 36.80 3.41
2610 5848 6.879458 ACAGAACATGAGGTACAAAATCTACC 59.121 38.462 0.00 0.00 34.81 3.18
2624 5862 4.083110 CCCTTAAACAGCACAGAACATGAG 60.083 45.833 0.00 0.00 0.00 2.90
2649 5887 3.049912 GCAGGAAAACAAAAGTTAGCCG 58.950 45.455 0.00 0.00 0.00 5.52
2667 5905 2.882876 GCAGGAGCAACATGGCAG 59.117 61.111 0.00 0.00 41.58 4.85
2694 5932 5.120830 CCAAAACTTCTTAGACAGATCACCG 59.879 44.000 0.00 0.00 0.00 4.94
2757 5995 2.774799 CGCAAAGCCATGGCCTACC 61.775 63.158 33.14 17.77 43.17 3.18
2759 5997 3.140141 GCGCAAAGCCATGGCCTA 61.140 61.111 33.14 0.00 43.17 3.93
2831 6069 3.946606 TCCTTCCCGGTGAAAGATTTAC 58.053 45.455 0.00 0.00 31.06 2.01
2861 6100 5.016173 AGAGTTATGGTTTGCAAGGCATAA 58.984 37.500 0.00 0.00 38.76 1.90
2908 6147 8.537223 CATCAGATAAATTTCCAAAATGCGAAG 58.463 33.333 0.00 0.00 0.00 3.79
3001 6240 5.178797 AGATCACCTTTGATTACTGAACCG 58.821 41.667 0.00 0.00 42.95 4.44
3010 6249 9.471702 ACTTTGATAATGAGATCACCTTTGATT 57.528 29.630 0.00 0.00 42.95 2.57
3043 6282 8.855110 ACAGGTCAAATGATTGTGTATAAACAA 58.145 29.630 10.90 10.90 43.82 2.83
3044 6283 8.402798 ACAGGTCAAATGATTGTGTATAAACA 57.597 30.769 0.00 0.00 37.79 2.83
3051 6290 6.899393 AACATACAGGTCAAATGATTGTGT 57.101 33.333 11.47 6.98 37.79 3.72
3063 6302 6.992715 ACTTATGAGCCAATAACATACAGGTC 59.007 38.462 0.00 0.00 0.00 3.85
3086 6325 9.588096 ACCCTTTGATTATTTCTGAACTTAACT 57.412 29.630 0.00 0.00 0.00 2.24
3098 6339 7.962441 AGTAAAAGCACACCCTTTGATTATTT 58.038 30.769 0.00 0.00 35.36 1.40
3108 6349 2.438021 TGACTGAGTAAAAGCACACCCT 59.562 45.455 0.00 0.00 0.00 4.34
3112 6353 5.050490 GTCTTCTGACTGAGTAAAAGCACA 58.950 41.667 0.00 0.00 39.94 4.57
3113 6354 5.583969 GTCTTCTGACTGAGTAAAAGCAC 57.416 43.478 0.00 0.00 39.94 4.40
3194 6435 8.093927 CAGCAATCCAAACTAATTTTAAGGGAA 58.906 33.333 0.00 0.00 0.00 3.97
3226 6467 4.053295 GCATTGAGCTTGTGTTTTGACAT 58.947 39.130 0.00 0.00 41.15 3.06
3227 6468 3.446799 GCATTGAGCTTGTGTTTTGACA 58.553 40.909 0.00 0.00 41.15 3.58
3265 6506 2.816411 ACTCCGATGGTCTAAACTCCA 58.184 47.619 0.00 0.00 38.14 3.86
3269 6510 6.485984 TCAGTAGATACTCCGATGGTCTAAAC 59.514 42.308 0.00 0.00 33.46 2.01
3272 6513 5.820404 TCAGTAGATACTCCGATGGTCTA 57.180 43.478 0.00 0.00 33.46 2.59
3391 6632 7.714377 CAGCATGAATCAAGACTTTATAGGAGT 59.286 37.037 0.00 0.00 39.69 3.85
3461 6702 6.254281 TCAAAAATGTAGGCTCTGCTTTAC 57.746 37.500 0.00 0.00 0.00 2.01
3467 6708 6.072286 ACAAGTCATCAAAAATGTAGGCTCTG 60.072 38.462 0.00 0.00 0.00 3.35
3478 6719 7.575532 GCATCATACTGGACAAGTCATCAAAAA 60.576 37.037 2.29 0.00 40.56 1.94
3500 6741 4.758674 AGCATAATCTACATGTGTGGCATC 59.241 41.667 9.11 0.00 35.19 3.91
3559 6800 8.591072 TGTAAGCAAGGAAGTAGTTACTGTTAT 58.409 33.333 0.00 0.00 36.50 1.89
3603 6844 0.462937 CACCCAATTGCATGCCCATG 60.463 55.000 16.68 10.77 41.60 3.66
3717 6958 7.759489 TTGACTAGTCATTAAGTGCCAAATT 57.241 32.000 25.68 0.00 39.64 1.82
3732 6973 6.038356 CCAATGCAATGGAAATTGACTAGTC 58.962 40.000 16.27 16.32 43.54 2.59
3912 7153 4.971830 CACTGCAACACAAACACTAGAATG 59.028 41.667 0.00 0.00 0.00 2.67
4042 7283 7.357429 TCTATAGATCCATCATGAATCGCAT 57.643 36.000 0.00 1.06 37.85 4.73
4118 7359 6.206395 CCATAATGTGGCACTTAACATGAA 57.794 37.500 19.83 0.00 42.12 2.57
4159 7400 3.662759 AGGGTTCCAAAGTTTCACTCA 57.337 42.857 0.00 0.00 0.00 3.41
4191 7433 3.388350 CCCAGAAACTAGTACCAGGATCC 59.612 52.174 2.48 2.48 0.00 3.36
4192 7434 4.031611 ACCCAGAAACTAGTACCAGGATC 58.968 47.826 0.00 0.00 0.00 3.36
4193 7435 3.775316 CACCCAGAAACTAGTACCAGGAT 59.225 47.826 0.00 0.00 0.00 3.24
4194 7436 3.170717 CACCCAGAAACTAGTACCAGGA 58.829 50.000 0.00 0.00 0.00 3.86
4195 7437 2.354805 GCACCCAGAAACTAGTACCAGG 60.355 54.545 0.00 0.00 0.00 4.45
4196 7438 2.354805 GGCACCCAGAAACTAGTACCAG 60.355 54.545 0.00 0.00 0.00 4.00
4197 7439 1.626825 GGCACCCAGAAACTAGTACCA 59.373 52.381 0.00 0.00 0.00 3.25
4198 7440 2.398252 GGCACCCAGAAACTAGTACC 57.602 55.000 0.00 0.00 0.00 3.34
4213 7455 3.059935 CGTAAATTTTGCAACAAGGGCAC 60.060 43.478 0.00 0.00 41.75 5.01
4214 7456 3.126831 CGTAAATTTTGCAACAAGGGCA 58.873 40.909 0.00 0.00 40.00 5.36
4215 7457 3.127589 ACGTAAATTTTGCAACAAGGGC 58.872 40.909 0.00 0.00 0.00 5.19
4216 7458 4.806247 TCAACGTAAATTTTGCAACAAGGG 59.194 37.500 0.00 0.00 0.00 3.95
4217 7459 5.051106 CCTCAACGTAAATTTTGCAACAAGG 60.051 40.000 0.00 0.00 0.00 3.61
4218 7460 5.051106 CCCTCAACGTAAATTTTGCAACAAG 60.051 40.000 0.00 0.00 0.00 3.16
4219 7461 4.806247 CCCTCAACGTAAATTTTGCAACAA 59.194 37.500 0.00 0.00 0.00 2.83
4220 7462 4.363999 CCCTCAACGTAAATTTTGCAACA 58.636 39.130 0.00 0.00 0.00 3.33
4221 7463 3.738791 CCCCTCAACGTAAATTTTGCAAC 59.261 43.478 0.00 0.00 0.00 4.17
4222 7464 3.243907 CCCCCTCAACGTAAATTTTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
4223 7465 2.297597 CCCCCTCAACGTAAATTTTGCA 59.702 45.455 0.00 0.00 0.00 4.08
4224 7466 2.929161 GCCCCCTCAACGTAAATTTTGC 60.929 50.000 0.00 0.00 0.00 3.68
4225 7467 2.560981 AGCCCCCTCAACGTAAATTTTG 59.439 45.455 0.00 0.00 0.00 2.44
4226 7468 2.884320 AGCCCCCTCAACGTAAATTTT 58.116 42.857 0.00 0.00 0.00 1.82
4227 7469 2.597578 AGCCCCCTCAACGTAAATTT 57.402 45.000 0.00 0.00 0.00 1.82
4228 7470 2.597578 AAGCCCCCTCAACGTAAATT 57.402 45.000 0.00 0.00 0.00 1.82
4229 7471 2.443416 GAAAGCCCCCTCAACGTAAAT 58.557 47.619 0.00 0.00 0.00 1.40
4230 7472 1.878948 CGAAAGCCCCCTCAACGTAAA 60.879 52.381 0.00 0.00 0.00 2.01
4231 7473 0.320946 CGAAAGCCCCCTCAACGTAA 60.321 55.000 0.00 0.00 0.00 3.18
4232 7474 1.294138 CGAAAGCCCCCTCAACGTA 59.706 57.895 0.00 0.00 0.00 3.57
4233 7475 2.032071 CGAAAGCCCCCTCAACGT 59.968 61.111 0.00 0.00 0.00 3.99
4234 7476 2.032071 ACGAAAGCCCCCTCAACG 59.968 61.111 0.00 0.00 0.00 4.10
4235 7477 0.322546 ATCACGAAAGCCCCCTCAAC 60.323 55.000 0.00 0.00 0.00 3.18
4236 7478 0.035439 GATCACGAAAGCCCCCTCAA 60.035 55.000 0.00 0.00 0.00 3.02
4237 7479 1.602237 GATCACGAAAGCCCCCTCA 59.398 57.895 0.00 0.00 0.00 3.86
4238 7480 1.153147 GGATCACGAAAGCCCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
4239 7481 1.616628 AGGATCACGAAAGCCCCCT 60.617 57.895 0.00 0.00 0.00 4.79
4240 7482 1.452108 CAGGATCACGAAAGCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
4241 7483 1.452108 CCAGGATCACGAAAGCCCC 60.452 63.158 0.00 0.00 0.00 5.80
4242 7484 0.539986 TACCAGGATCACGAAAGCCC 59.460 55.000 0.00 0.00 0.00 5.19
4243 7485 1.207329 AGTACCAGGATCACGAAAGCC 59.793 52.381 0.00 0.00 0.00 4.35
4244 7486 2.674796 AGTACCAGGATCACGAAAGC 57.325 50.000 0.00 0.00 0.00 3.51
4245 7487 5.326200 ACTTAGTACCAGGATCACGAAAG 57.674 43.478 0.00 1.20 0.00 2.62
4246 7488 5.733620 AACTTAGTACCAGGATCACGAAA 57.266 39.130 0.00 0.00 0.00 3.46
4247 7489 5.479375 AGAAACTTAGTACCAGGATCACGAA 59.521 40.000 0.00 0.00 0.00 3.85
4248 7490 5.014858 AGAAACTTAGTACCAGGATCACGA 58.985 41.667 0.00 0.00 0.00 4.35
4249 7491 5.103000 CAGAAACTTAGTACCAGGATCACG 58.897 45.833 0.00 0.00 0.00 4.35
4306 8025 2.321719 GATCCCCTCTGAGGTAAGGAC 58.678 57.143 21.70 11.79 34.35 3.85
4307 8026 1.937350 TGATCCCCTCTGAGGTAAGGA 59.063 52.381 21.70 20.03 34.35 3.36
4308 8027 2.478872 TGATCCCCTCTGAGGTAAGG 57.521 55.000 21.70 15.67 31.93 2.69
4309 8028 3.640967 CTCTTGATCCCCTCTGAGGTAAG 59.359 52.174 21.70 15.87 31.93 2.34
4316 8035 2.230992 CGCTATCTCTTGATCCCCTCTG 59.769 54.545 0.00 0.00 34.32 3.35
4317 8036 2.524306 CGCTATCTCTTGATCCCCTCT 58.476 52.381 0.00 0.00 34.32 3.69
4320 8039 1.343069 ACCGCTATCTCTTGATCCCC 58.657 55.000 0.00 0.00 34.32 4.81
4340 8059 2.306805 AGGATTCAAGCAGGATCACACA 59.693 45.455 0.00 0.00 0.00 3.72
4342 8061 2.419159 CGAGGATTCAAGCAGGATCACA 60.419 50.000 0.00 0.00 0.00 3.58
4352 8071 0.543749 AGGGAAGCCGAGGATTCAAG 59.456 55.000 19.95 0.00 41.72 3.02
4384 8103 3.371285 GGTCTCAGGCGATTAAAACTGTC 59.629 47.826 0.00 0.00 32.92 3.51
4392 8111 1.134367 CGAACTGGTCTCAGGCGATTA 59.866 52.381 0.00 0.00 44.99 1.75
4425 8144 4.515191 TGAGAGGAAAATTTGTGAACGAGG 59.485 41.667 0.00 0.00 0.00 4.63
4486 8205 1.200020 GCATTGGAACTCAGAAACCCG 59.800 52.381 0.00 0.00 0.00 5.28
4514 8233 1.828224 GGCGGGCCCTTTTAGGATG 60.828 63.158 22.43 0.92 37.67 3.51
4517 8236 1.148498 CTAGGCGGGCCCTTTTAGG 59.852 63.158 22.43 3.53 43.06 2.69
4596 8315 2.223377 GCGGAATGTGACGAGACTTTTT 59.777 45.455 0.00 0.00 0.00 1.94
4597 8316 1.798813 GCGGAATGTGACGAGACTTTT 59.201 47.619 0.00 0.00 0.00 2.27
4598 8317 1.270094 TGCGGAATGTGACGAGACTTT 60.270 47.619 0.00 0.00 0.00 2.66
4599 8318 0.317160 TGCGGAATGTGACGAGACTT 59.683 50.000 0.00 0.00 0.00 3.01
4600 8319 0.388649 GTGCGGAATGTGACGAGACT 60.389 55.000 0.00 0.00 0.00 3.24
4601 8320 0.666274 TGTGCGGAATGTGACGAGAC 60.666 55.000 0.00 0.00 0.00 3.36
4602 8321 0.246360 ATGTGCGGAATGTGACGAGA 59.754 50.000 0.00 0.00 0.00 4.04
4603 8322 1.078709 AATGTGCGGAATGTGACGAG 58.921 50.000 0.00 0.00 0.00 4.18
4604 8323 2.371910 TAATGTGCGGAATGTGACGA 57.628 45.000 0.00 0.00 0.00 4.20
4605 8324 2.032894 GGATAATGTGCGGAATGTGACG 60.033 50.000 0.00 0.00 0.00 4.35
4606 8325 3.002656 CAGGATAATGTGCGGAATGTGAC 59.997 47.826 0.00 0.00 0.00 3.67
4607 8326 3.118445 TCAGGATAATGTGCGGAATGTGA 60.118 43.478 0.00 0.00 0.00 3.58
4608 8327 3.205338 TCAGGATAATGTGCGGAATGTG 58.795 45.455 0.00 0.00 0.00 3.21
4609 8328 3.558931 TCAGGATAATGTGCGGAATGT 57.441 42.857 0.00 0.00 0.00 2.71
4610 8329 4.261322 CCTTTCAGGATAATGTGCGGAATG 60.261 45.833 0.00 0.00 37.67 2.67
4611 8330 3.885297 CCTTTCAGGATAATGTGCGGAAT 59.115 43.478 0.00 0.00 37.67 3.01
4612 8331 3.054728 TCCTTTCAGGATAATGTGCGGAA 60.055 43.478 0.00 0.00 40.06 4.30
4613 8332 2.503765 TCCTTTCAGGATAATGTGCGGA 59.496 45.455 0.00 0.00 40.06 5.54
4614 8333 2.917933 TCCTTTCAGGATAATGTGCGG 58.082 47.619 0.00 0.00 40.06 5.69
4615 8334 4.963276 TTTCCTTTCAGGATAATGTGCG 57.037 40.909 0.00 0.00 45.34 5.34
4616 8335 6.024552 TGTTTTCCTTTCAGGATAATGTGC 57.975 37.500 0.00 0.00 45.34 4.57
4623 8342 5.312079 CAGACTCTGTTTTCCTTTCAGGAT 58.688 41.667 0.00 0.00 45.34 3.24
4631 8350 2.370189 CCTGTCCAGACTCTGTTTTCCT 59.630 50.000 5.32 0.00 0.00 3.36
4633 8352 2.147150 GCCTGTCCAGACTCTGTTTTC 58.853 52.381 5.32 0.00 0.00 2.29
4650 8369 6.182627 TCAACATCAGTTATCATTCTTGCCT 58.817 36.000 0.00 0.00 35.85 4.75
4656 8405 9.462174 TGTGTTTTTCAACATCAGTTATCATTC 57.538 29.630 0.00 0.00 44.85 2.67
4688 8437 3.592898 TTCATCTGCGCTTCAGTTAGA 57.407 42.857 9.73 0.43 43.32 2.10
4689 8438 4.668576 TTTTCATCTGCGCTTCAGTTAG 57.331 40.909 9.73 0.00 43.32 2.34
4747 8496 6.092748 TCTTTTTCAAGTGTGTCTTTTGCTC 58.907 36.000 0.00 0.00 33.63 4.26
4755 8504 6.852664 TCCTCTTTTCTTTTTCAAGTGTGTC 58.147 36.000 0.00 0.00 0.00 3.67
4756 8505 6.834168 TCCTCTTTTCTTTTTCAAGTGTGT 57.166 33.333 0.00 0.00 0.00 3.72
4800 8549 5.935789 CGGTCCCTGTCAATTCTTAAAACTA 59.064 40.000 0.00 0.00 0.00 2.24
4802 8551 4.615223 GCGGTCCCTGTCAATTCTTAAAAC 60.615 45.833 0.00 0.00 0.00 2.43
4815 8564 4.657824 CGTTCACGCGGTCCCTGT 62.658 66.667 12.47 0.00 0.00 4.00
4902 8706 1.084370 GTTGACGGCCGATCAAGAGG 61.084 60.000 35.90 0.00 36.76 3.69
4903 8707 1.084370 GGTTGACGGCCGATCAAGAG 61.084 60.000 35.90 0.00 36.76 2.85
4919 8723 1.203225 AGTACTTACCTGGACGGGGTT 60.203 52.381 0.00 0.00 38.19 4.11
4927 8731 1.341778 ACGGAGGGAGTACTTACCTGG 60.342 57.143 20.89 15.28 34.02 4.45
4938 8742 3.641906 ACTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
4939 8743 3.386726 CACTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
4940 8744 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
4941 8745 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
4942 8746 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
4943 8747 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
4944 8748 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.