Multiple sequence alignment - TraesCS6D01G293200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G293200 chr6D 100.000 6818 0 0 489 7306 403976539 403969722 0.000000e+00 12591.0
1 TraesCS6D01G293200 chr6D 100.000 396 0 0 7565 7960 403969463 403969068 0.000000e+00 732.0
2 TraesCS6D01G293200 chr6D 100.000 217 0 0 1 217 403977027 403976811 1.240000e-107 401.0
3 TraesCS6D01G293200 chr6D 88.312 77 7 1 3947 4021 110868333 110868409 3.060000e-14 91.6
4 TraesCS6D01G293200 chr6A 93.293 3176 127 42 500 3632 550644088 550640956 0.000000e+00 4606.0
5 TraesCS6D01G293200 chr6A 94.426 1184 50 8 5515 6682 550639320 550638137 0.000000e+00 1807.0
6 TraesCS6D01G293200 chr6A 95.801 643 21 4 4203 4842 550640646 550640007 0.000000e+00 1033.0
7 TraesCS6D01G293200 chr6A 95.559 608 15 11 4905 5505 550639988 550639386 0.000000e+00 963.0
8 TraesCS6D01G293200 chr6A 96.502 486 14 1 6805 7290 550637734 550637252 0.000000e+00 800.0
9 TraesCS6D01G293200 chr6A 90.909 220 3 5 1 217 550644393 550644188 6.080000e-71 279.0
10 TraesCS6D01G293200 chr6A 92.143 140 6 2 6624 6762 550638144 550638009 8.150000e-45 193.0
11 TraesCS6D01G293200 chr6A 95.000 40 0 2 3993 4031 399220897 399220935 2.400000e-05 62.1
12 TraesCS6D01G293200 chr6B 93.136 2229 96 21 490 2695 605801969 605799775 0.000000e+00 3216.0
13 TraesCS6D01G293200 chr6B 96.518 1321 32 11 4203 5513 605798659 605797343 0.000000e+00 2172.0
14 TraesCS6D01G293200 chr6B 93.745 1183 51 12 5515 6682 605797270 605796096 0.000000e+00 1753.0
15 TraesCS6D01G293200 chr6B 93.651 693 16 10 2965 3632 605799727 605799038 0.000000e+00 1011.0
16 TraesCS6D01G293200 chr6B 95.922 515 17 3 6780 7290 605795701 605795187 0.000000e+00 832.0
17 TraesCS6D01G293200 chr6B 93.478 322 19 2 3793 4113 605799004 605798684 2.010000e-130 477.0
18 TraesCS6D01G293200 chr6B 96.313 217 6 2 1 217 605802448 605802234 9.820000e-94 355.0
19 TraesCS6D01G293200 chr6B 86.454 251 24 7 3638 3884 704415633 704415389 4.740000e-67 267.0
20 TraesCS6D01G293200 chr6B 93.617 141 3 2 6623 6763 605796104 605795970 1.050000e-48 206.0
21 TraesCS6D01G293200 chr6B 96.629 89 3 0 7819 7907 646750145 646750057 1.790000e-31 148.0
22 TraesCS6D01G293200 chr6B 90.789 76 5 1 3945 4020 554789647 554789720 5.080000e-17 100.0
23 TraesCS6D01G293200 chr6B 83.838 99 11 5 6114 6207 462028684 462028782 1.100000e-13 89.8
24 TraesCS6D01G293200 chr6B 84.337 83 6 5 3943 4018 408680900 408680818 3.080000e-09 75.0
25 TraesCS6D01G293200 chr6B 96.970 33 1 0 7575 7607 592229519 592229487 1.000000e-03 56.5
26 TraesCS6D01G293200 chr3A 87.952 249 24 5 3638 3884 36665430 36665674 1.010000e-73 289.0
27 TraesCS6D01G293200 chr3A 85.199 277 26 14 3640 3910 401176984 401176717 3.660000e-68 270.0
28 TraesCS6D01G293200 chr3A 93.000 100 4 3 7812 7908 737369165 737369264 8.330000e-30 143.0
29 TraesCS6D01G293200 chr3A 88.372 86 6 4 7777 7861 346745344 346745262 5.080000e-17 100.0
30 TraesCS6D01G293200 chr3A 87.356 87 8 3 6121 6204 507291576 507291490 6.580000e-16 97.1
31 TraesCS6D01G293200 chr1A 87.952 249 21 6 3638 3884 345187713 345187472 1.310000e-72 285.0
32 TraesCS6D01G293200 chr1A 85.992 257 27 7 3640 3892 565358648 565358899 4.740000e-67 267.0
33 TraesCS6D01G293200 chr1A 84.646 254 32 5 3638 3888 533124077 533124326 6.170000e-61 246.0
34 TraesCS6D01G293200 chr1A 92.857 42 3 0 3993 4034 576530344 576530385 2.400000e-05 62.1
35 TraesCS6D01G293200 chr7D 87.550 249 24 6 3638 3884 449561557 449561800 1.690000e-71 281.0
36 TraesCS6D01G293200 chr7D 86.747 249 24 7 3638 3884 152094103 152093862 1.320000e-67 268.0
37 TraesCS6D01G293200 chr7D 90.404 198 16 3 987 1183 128912403 128912598 2.850000e-64 257.0
38 TraesCS6D01G293200 chr7D 85.200 250 28 6 3638 3884 132761619 132761862 1.720000e-61 248.0
39 TraesCS6D01G293200 chr7D 82.524 103 13 5 6111 6208 221683580 221683478 1.420000e-12 86.1
40 TraesCS6D01G293200 chr7D 80.000 105 18 2 3522 3626 431099721 431099822 3.080000e-09 75.0
41 TraesCS6D01G293200 chr7D 100.000 28 0 0 3946 3973 383336063 383336036 1.400000e-02 52.8
42 TraesCS6D01G293200 chr7A 87.200 250 24 7 3638 3884 520564952 520564708 2.190000e-70 278.0
43 TraesCS6D01G293200 chr7A 86.800 250 24 5 3638 3884 579232376 579232619 3.660000e-68 270.0
44 TraesCS6D01G293200 chr7A 90.404 198 16 3 987 1183 128826509 128826704 2.850000e-64 257.0
45 TraesCS6D01G293200 chr7A 100.000 31 0 0 3943 3973 701813572 701813602 3.100000e-04 58.4
46 TraesCS6D01G293200 chr4A 87.097 248 25 5 3638 3882 465279076 465279319 2.830000e-69 274.0
47 TraesCS6D01G293200 chr4A 91.667 48 4 0 7576 7623 2628888 2628841 5.160000e-07 67.6
48 TraesCS6D01G293200 chr4A 88.636 44 4 1 3976 4018 300455684 300455641 1.400000e-02 52.8
49 TraesCS6D01G293200 chr5B 86.345 249 28 5 3638 3884 505364671 505364915 4.740000e-67 267.0
50 TraesCS6D01G293200 chr5B 87.500 56 2 4 3978 4029 618153317 618153371 8.630000e-05 60.2
51 TraesCS6D01G293200 chr5B 100.000 30 0 0 3944 3973 176603866 176603837 1.000000e-03 56.5
52 TraesCS6D01G293200 chr2D 85.887 248 29 5 3639 3884 506170455 506170698 7.920000e-65 259.0
53 TraesCS6D01G293200 chr2D 96.739 92 2 1 7821 7912 128890639 128890729 1.380000e-32 152.0
54 TraesCS6D01G293200 chr2D 95.699 93 4 0 7813 7905 32020812 32020720 4.980000e-32 150.0
55 TraesCS6D01G293200 chr2D 96.667 90 3 0 7821 7910 302248097 302248008 4.980000e-32 150.0
56 TraesCS6D01G293200 chr2D 89.286 84 6 3 6121 6201 512165838 512165921 1.410000e-17 102.0
57 TraesCS6D01G293200 chr2D 92.063 63 5 0 3565 3627 437903370 437903432 1.100000e-13 89.8
58 TraesCS6D01G293200 chr2D 89.062 64 5 2 3567 3629 643444161 643444099 2.380000e-10 78.7
59 TraesCS6D01G293200 chr7B 91.444 187 16 0 997 1183 90189609 90189795 2.850000e-64 257.0
60 TraesCS6D01G293200 chr7B 88.889 45 3 2 3978 4020 683244637 683244681 4.000000e-03 54.7
61 TraesCS6D01G293200 chr5A 85.214 257 29 7 3640 3892 1273494 1273745 1.030000e-63 255.0
62 TraesCS6D01G293200 chr4B 85.317 252 32 3 3638 3888 24832139 24832386 1.030000e-63 255.0
63 TraesCS6D01G293200 chr4B 95.238 42 1 1 3993 4034 315723299 315723259 1.850000e-06 65.8
64 TraesCS6D01G293200 chr4D 85.542 249 24 8 3638 3884 25387350 25387588 4.770000e-62 250.0
65 TraesCS6D01G293200 chr4D 93.151 146 10 0 1042 1187 469319620 469319475 1.740000e-51 215.0
66 TraesCS6D01G293200 chr4D 85.437 206 25 4 3680 3884 404910840 404910639 8.090000e-50 209.0
67 TraesCS6D01G293200 chr4D 95.238 42 1 1 3993 4034 220347103 220347143 1.850000e-06 65.8
68 TraesCS6D01G293200 chr3D 86.638 232 23 5 3658 3886 334019531 334019305 4.770000e-62 250.0
69 TraesCS6D01G293200 chr3D 84.211 247 30 6 3638 3882 14084014 14084253 1.730000e-56 231.0
70 TraesCS6D01G293200 chr3D 93.023 43 3 0 7575 7617 5512462 5512420 6.670000e-06 63.9
71 TraesCS6D01G293200 chr3B 90.164 122 9 3 3509 3629 170827936 170828055 1.070000e-33 156.0
72 TraesCS6D01G293200 chr3B 86.822 129 13 2 3504 3632 782833721 782833597 2.990000e-29 141.0
73 TraesCS6D01G293200 chr3B 86.517 89 9 3 6121 6206 649688549 649688637 2.360000e-15 95.3
74 TraesCS6D01G293200 chr3B 86.207 87 9 3 6123 6206 486386628 486386714 3.060000e-14 91.6
75 TraesCS6D01G293200 chr3B 83.077 65 11 0 7575 7639 12915229 12915165 8.630000e-05 60.2
76 TraesCS6D01G293200 chr5D 97.753 89 2 0 7817 7905 339760789 339760877 3.850000e-33 154.0
77 TraesCS6D01G293200 chr5D 81.053 190 30 5 3648 3835 301631861 301631676 6.440000e-31 147.0
78 TraesCS6D01G293200 chr5D 81.065 169 27 4 3710 3875 547998879 547998713 6.480000e-26 130.0
79 TraesCS6D01G293200 chr5D 85.088 114 11 4 3516 3628 359042810 359042918 2.350000e-20 111.0
80 TraesCS6D01G293200 chr5D 85.714 56 7 1 7575 7630 391863460 391863514 3.100000e-04 58.4
81 TraesCS6D01G293200 chr2A 95.699 93 2 2 7821 7911 724518956 724519048 1.790000e-31 148.0
82 TraesCS6D01G293200 chr2A 86.555 119 11 3 3514 3632 777811346 777811233 8.390000e-25 126.0
83 TraesCS6D01G293200 chr2B 97.647 85 2 0 7821 7905 133525735 133525651 6.440000e-31 147.0
84 TraesCS6D01G293200 chr2B 84.211 95 12 3 6123 6214 799358823 799358729 1.100000e-13 89.8
85 TraesCS6D01G293200 chr1D 83.582 134 19 1 7777 7907 439024740 439024873 1.080000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G293200 chr6D 403969068 403977027 7959 True 4574.666667 12591 100.000000 1 7960 3 chr6D.!!$R1 7959
1 TraesCS6D01G293200 chr6A 550637252 550644393 7141 True 1383.000000 4606 94.090429 1 7290 7 chr6A.!!$R1 7289
2 TraesCS6D01G293200 chr6B 605795187 605802448 7261 True 1252.750000 3216 94.547500 1 7290 8 chr6B.!!$R5 7289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 155 0.698818 TCCCTTCCTTCCTTCCTTGC 59.301 55.000 0.00 0.00 0.00 4.01 F
1198 1224 0.037605 CAGGTACACACGTCCTTCCC 60.038 60.000 0.00 0.00 0.00 3.97 F
2910 2970 0.538118 GTCCATGGCACTAACGGGTA 59.462 55.000 6.96 0.00 0.00 3.69 F
3691 3822 1.066605 ACAGTACGAACGCTGTTCACT 59.933 47.619 17.37 12.46 42.61 3.41 F
3895 4026 1.070309 GCCAAAAGCTCGCGATCTATG 60.070 52.381 13.56 14.47 38.99 2.23 F
4128 4273 1.427368 ACACTCCCTTGGGCACAATAA 59.573 47.619 0.00 0.00 35.73 1.40 F
5875 6112 0.935898 CAGCGCAGTCCATCTGAATC 59.064 55.000 11.47 0.00 46.27 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1384 0.036306 GAAACTGACATGGGACCCGT 59.964 55.000 5.91 1.59 0.00 5.28 R
3071 3147 1.595311 AGGGGCAGACCATGACATTA 58.405 50.000 0.00 0.00 39.54 1.90 R
4297 4445 3.252215 TCAACCAAATCGCAACTACCTTG 59.748 43.478 0.00 0.00 0.00 3.61 R
4846 4995 4.395231 GTGTAGATGACCCTAAACCAAAGC 59.605 45.833 0.00 0.00 0.00 3.51 R
5859 6096 3.459232 TTAGGATTCAGATGGACTGCG 57.541 47.619 0.00 0.00 45.38 5.18 R
6119 6364 2.464796 TCAGGGCGGAAGGAGTATAA 57.535 50.000 0.00 0.00 0.00 0.98 R
7608 8174 0.106719 ACATCCACGGGCATTTAGGG 60.107 55.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 150 1.414550 CCTCGATCCCTTCCTTCCTTC 59.585 57.143 0.00 0.00 0.00 3.46
150 153 1.840635 CGATCCCTTCCTTCCTTCCTT 59.159 52.381 0.00 0.00 0.00 3.36
151 154 2.420687 CGATCCCTTCCTTCCTTCCTTG 60.421 54.545 0.00 0.00 0.00 3.61
152 155 0.698818 TCCCTTCCTTCCTTCCTTGC 59.301 55.000 0.00 0.00 0.00 4.01
153 156 0.701147 CCCTTCCTTCCTTCCTTGCT 59.299 55.000 0.00 0.00 0.00 3.91
154 157 1.340502 CCCTTCCTTCCTTCCTTGCTC 60.341 57.143 0.00 0.00 0.00 4.26
517 528 2.997315 CGTCCACTCCCCTCTGCA 60.997 66.667 0.00 0.00 0.00 4.41
614 625 1.193874 CTTGCGTGGTTTAACGTCCTC 59.806 52.381 0.00 0.00 45.32 3.71
710 725 0.913205 TACTCCGCCCTTTGCCAATA 59.087 50.000 0.00 0.00 36.24 1.90
900 916 4.828925 GTGCTCCGAGCCTGCCTC 62.829 72.222 17.81 0.00 41.51 4.70
1187 1213 2.125512 CGCCAGCTCCAGGTACAC 60.126 66.667 0.00 0.00 0.00 2.90
1194 1220 1.533469 GCTCCAGGTACACACGTCCT 61.533 60.000 0.00 0.00 0.00 3.85
1198 1224 0.037605 CAGGTACACACGTCCTTCCC 60.038 60.000 0.00 0.00 0.00 3.97
1201 1227 1.156803 TACACACGTCCTTCCCCCT 59.843 57.895 0.00 0.00 0.00 4.79
1203 1229 2.606826 ACACGTCCTTCCCCCTCC 60.607 66.667 0.00 0.00 0.00 4.30
1204 1230 3.771160 CACGTCCTTCCCCCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
1227 1267 2.038975 CTCCGTTCCTCCCCTCCA 59.961 66.667 0.00 0.00 0.00 3.86
1232 1272 1.081277 GTTCCTCCCCTCCAGTCCT 59.919 63.158 0.00 0.00 0.00 3.85
1239 1279 1.219393 CCCTCCAGTCCTTTCTCGC 59.781 63.158 0.00 0.00 0.00 5.03
1253 1293 4.161976 TCGCCTCGTCTTCTCGCG 62.162 66.667 0.00 0.00 44.00 5.87
1254 1294 4.161976 CGCCTCGTCTTCTCGCGA 62.162 66.667 9.26 9.26 45.41 5.87
1283 1323 0.538516 TAGATCTGCCCGCCTCTCTC 60.539 60.000 5.18 0.00 0.00 3.20
1333 1373 1.227674 CTCGCCTAGGGTTCATGCC 60.228 63.158 11.72 0.00 0.00 4.40
1381 1421 4.736631 GCGTGCTTTTCCGCGTCC 62.737 66.667 4.92 0.00 40.56 4.79
1383 1423 2.975799 GTGCTTTTCCGCGTCCCA 60.976 61.111 4.92 0.00 0.00 4.37
1384 1424 2.668212 TGCTTTTCCGCGTCCCAG 60.668 61.111 4.92 0.00 0.00 4.45
1562 1602 2.796593 GCTGGTTGCACATTTTTCTGTC 59.203 45.455 0.00 0.00 42.31 3.51
1570 1612 5.586339 TGCACATTTTTCTGTCGATTTTCA 58.414 33.333 0.00 0.00 0.00 2.69
1616 1658 4.812476 TACGAGCATGCGCGCCTT 62.812 61.111 37.95 24.01 45.49 4.35
1668 1712 4.813697 TGCTGCGTATGTTTATGCATCTTA 59.186 37.500 0.19 0.00 46.50 2.10
1780 1824 4.520111 ACTTGTGATTTTATGTGCTGCTGA 59.480 37.500 0.00 0.00 0.00 4.26
1892 1937 1.767127 TTGCACGCATTGTTCGTCGT 61.767 50.000 0.00 0.00 38.19 4.34
1903 1948 5.366752 CATTGTTCGTCGTCTCTTTTCTTC 58.633 41.667 0.00 0.00 0.00 2.87
2174 2229 9.905713 ATCAGCCTTCTTTAACTTATTATGTGA 57.094 29.630 0.00 0.00 0.00 3.58
2238 2293 8.993121 AGATGAAATAGTCTTAGTTGTGTTGTG 58.007 33.333 0.00 0.00 0.00 3.33
2262 2317 7.222611 GTGTATGTGTTGACATTGAAAAGCTTT 59.777 33.333 5.69 5.69 40.05 3.51
2264 2319 5.108517 TGTGTTGACATTGAAAAGCTTTCC 58.891 37.500 13.10 0.00 0.00 3.13
2423 2478 3.328931 AGCAATCTTTTGAGGAGTCTCCA 59.671 43.478 21.26 0.00 39.23 3.86
2424 2479 4.074970 GCAATCTTTTGAGGAGTCTCCAA 58.925 43.478 21.26 5.93 39.23 3.53
2430 2485 5.532406 TCTTTTGAGGAGTCTCCAATGTTTG 59.468 40.000 21.26 5.66 39.61 2.93
2437 2492 5.893824 AGGAGTCTCCAATGTTTGAAGTTTT 59.106 36.000 21.26 0.00 39.61 2.43
2469 2524 1.491754 TGGATCATACTGGTGCATGCT 59.508 47.619 20.33 0.00 0.00 3.79
2486 2541 7.253422 GTGCATGCTAACTTCAGTGAATTATT 58.747 34.615 20.33 4.43 0.00 1.40
2531 2586 8.863872 AACATAGCATTACAAGGAAAGTACTT 57.136 30.769 1.12 1.12 0.00 2.24
2555 2610 5.178797 TGACTTGGAACTCTTATTAGCAGC 58.821 41.667 0.00 0.00 0.00 5.25
2557 2612 5.181748 ACTTGGAACTCTTATTAGCAGCAG 58.818 41.667 0.00 0.00 0.00 4.24
2610 2665 1.083489 CAGCGTTAATTTCCTCCGCA 58.917 50.000 5.11 0.00 46.26 5.69
2723 2781 5.208890 TGGTACATAATAGGCACTGAGAGT 58.791 41.667 0.00 0.00 41.52 3.24
2767 2827 7.611213 AAGTTAATGGGAAAATGTAGACTCG 57.389 36.000 0.00 0.00 0.00 4.18
2768 2828 6.708285 AGTTAATGGGAAAATGTAGACTCGT 58.292 36.000 0.00 0.00 0.00 4.18
2864 2924 6.486248 TCTCTTCGTTTCAGAAACAAACATG 58.514 36.000 23.02 8.11 41.44 3.21
2865 2925 5.034152 TCTTCGTTTCAGAAACAAACATGC 58.966 37.500 23.02 0.00 41.44 4.06
2910 2970 0.538118 GTCCATGGCACTAACGGGTA 59.462 55.000 6.96 0.00 0.00 3.69
3048 3124 9.093970 TCTAGTAATTTGATGGTCATTGTTACG 57.906 33.333 0.00 0.00 30.32 3.18
3083 3162 7.602644 TCAAAGTGACTAGTTAATGTCATGGTC 59.397 37.037 0.00 0.00 43.75 4.02
3388 3467 8.596293 CAATATAAGGATGTGGCCCAAAATAAT 58.404 33.333 0.00 0.00 0.00 1.28
3504 3583 6.920210 AGAATACTTGAAAGTTGAAAAGCAGC 59.080 34.615 0.21 0.00 40.37 5.25
3505 3584 3.785486 ACTTGAAAGTTGAAAAGCAGCC 58.215 40.909 0.00 0.00 35.21 4.85
3506 3585 2.888834 TGAAAGTTGAAAAGCAGCCC 57.111 45.000 0.00 0.00 0.00 5.19
3664 3795 8.873242 AAAAACACAAAATCGTGATTTGAAAC 57.127 26.923 8.49 0.00 39.92 2.78
3665 3796 7.826260 AAACACAAAATCGTGATTTGAAACT 57.174 28.000 8.49 0.00 40.57 2.66
3666 3797 6.810888 ACACAAAATCGTGATTTGAAACTG 57.189 33.333 8.49 5.70 40.57 3.16
3667 3798 6.559810 ACACAAAATCGTGATTTGAAACTGA 58.440 32.000 8.49 0.00 40.57 3.41
3668 3799 7.202526 ACACAAAATCGTGATTTGAAACTGAT 58.797 30.769 8.49 0.00 40.57 2.90
3669 3800 7.167968 ACACAAAATCGTGATTTGAAACTGATG 59.832 33.333 8.49 3.85 40.57 3.07
3670 3801 7.379262 CACAAAATCGTGATTTGAAACTGATGA 59.621 33.333 8.49 0.00 40.57 2.92
3671 3802 7.920151 ACAAAATCGTGATTTGAAACTGATGAA 59.080 29.630 8.49 0.00 40.57 2.57
3672 3803 7.858052 AAATCGTGATTTGAAACTGATGAAC 57.142 32.000 7.02 0.00 39.36 3.18
3673 3804 6.558771 ATCGTGATTTGAAACTGATGAACA 57.441 33.333 0.00 0.00 0.00 3.18
3674 3805 7.592533 AAATCGTGATTTGAAACTGATGAACAG 59.407 33.333 7.02 0.00 43.80 3.16
3684 3815 2.596452 CTGATGAACAGTACGAACGCT 58.404 47.619 0.00 0.00 41.30 5.07
3685 3816 2.324860 TGATGAACAGTACGAACGCTG 58.675 47.619 0.00 0.00 38.58 5.18
3686 3817 2.287970 TGATGAACAGTACGAACGCTGT 60.288 45.455 0.00 0.00 46.61 4.40
3689 3820 3.951115 ACAGTACGAACGCTGTTCA 57.049 47.368 17.37 1.44 42.61 3.18
3690 3821 1.484356 ACAGTACGAACGCTGTTCAC 58.516 50.000 17.37 10.92 42.61 3.18
3691 3822 1.066605 ACAGTACGAACGCTGTTCACT 59.933 47.619 17.37 12.46 42.61 3.41
3692 3823 2.291465 ACAGTACGAACGCTGTTCACTA 59.709 45.455 17.37 6.86 42.61 2.74
3693 3824 3.057736 ACAGTACGAACGCTGTTCACTAT 60.058 43.478 17.37 5.16 42.61 2.12
3694 3825 3.918591 CAGTACGAACGCTGTTCACTATT 59.081 43.478 17.37 4.73 0.00 1.73
3695 3826 5.090757 CAGTACGAACGCTGTTCACTATTA 58.909 41.667 17.37 2.84 0.00 0.98
3696 3827 5.227391 CAGTACGAACGCTGTTCACTATTAG 59.773 44.000 17.37 5.82 0.00 1.73
3697 3828 4.430137 ACGAACGCTGTTCACTATTAGA 57.570 40.909 17.37 0.00 0.00 2.10
3698 3829 4.801891 ACGAACGCTGTTCACTATTAGAA 58.198 39.130 17.37 0.00 0.00 2.10
3699 3830 5.224888 ACGAACGCTGTTCACTATTAGAAA 58.775 37.500 17.37 0.00 0.00 2.52
3700 3831 5.345202 ACGAACGCTGTTCACTATTAGAAAG 59.655 40.000 17.37 3.89 0.00 2.62
3701 3832 5.220228 CGAACGCTGTTCACTATTAGAAAGG 60.220 44.000 17.37 0.00 0.00 3.11
3702 3833 3.933332 ACGCTGTTCACTATTAGAAAGGC 59.067 43.478 0.00 0.00 0.00 4.35
3703 3834 3.932710 CGCTGTTCACTATTAGAAAGGCA 59.067 43.478 0.00 0.00 0.00 4.75
3704 3835 4.033358 CGCTGTTCACTATTAGAAAGGCAG 59.967 45.833 0.00 0.00 0.00 4.85
3705 3836 4.333926 GCTGTTCACTATTAGAAAGGCAGG 59.666 45.833 0.00 0.00 0.00 4.85
3706 3837 5.734720 CTGTTCACTATTAGAAAGGCAGGA 58.265 41.667 0.00 0.00 0.00 3.86
3707 3838 6.313519 TGTTCACTATTAGAAAGGCAGGAT 57.686 37.500 0.00 0.00 0.00 3.24
3708 3839 6.721318 TGTTCACTATTAGAAAGGCAGGATT 58.279 36.000 0.00 0.00 0.00 3.01
3709 3840 7.175104 TGTTCACTATTAGAAAGGCAGGATTT 58.825 34.615 0.00 0.00 0.00 2.17
3710 3841 7.669722 TGTTCACTATTAGAAAGGCAGGATTTT 59.330 33.333 0.00 0.00 0.00 1.82
3711 3842 8.523658 GTTCACTATTAGAAAGGCAGGATTTTT 58.476 33.333 0.00 0.00 0.00 1.94
3736 3867 7.687941 TTTCCATTTTTCTGTAGATCTCACC 57.312 36.000 0.00 0.00 0.00 4.02
3737 3868 6.373005 TCCATTTTTCTGTAGATCTCACCA 57.627 37.500 0.00 0.00 0.00 4.17
3738 3869 6.962182 TCCATTTTTCTGTAGATCTCACCAT 58.038 36.000 0.00 0.00 0.00 3.55
3739 3870 8.089625 TCCATTTTTCTGTAGATCTCACCATA 57.910 34.615 0.00 0.00 0.00 2.74
3740 3871 8.548025 TCCATTTTTCTGTAGATCTCACCATAA 58.452 33.333 0.00 0.00 0.00 1.90
3741 3872 9.347240 CCATTTTTCTGTAGATCTCACCATAAT 57.653 33.333 0.00 0.00 0.00 1.28
3743 3874 9.911788 ATTTTTCTGTAGATCTCACCATAATGT 57.088 29.630 0.00 0.00 0.00 2.71
3749 3880 9.987272 CTGTAGATCTCACCATAATGTATTTCA 57.013 33.333 0.00 0.00 0.00 2.69
3753 3884 8.790718 AGATCTCACCATAATGTATTTCATTGC 58.209 33.333 0.00 0.00 45.14 3.56
3754 3885 7.275888 TCTCACCATAATGTATTTCATTGCC 57.724 36.000 3.73 0.00 45.14 4.52
3755 3886 6.832900 TCTCACCATAATGTATTTCATTGCCA 59.167 34.615 3.73 0.00 45.14 4.92
3756 3887 7.013559 TCTCACCATAATGTATTTCATTGCCAG 59.986 37.037 3.73 0.00 45.14 4.85
3757 3888 6.832900 TCACCATAATGTATTTCATTGCCAGA 59.167 34.615 3.73 0.00 45.14 3.86
3758 3889 6.919662 CACCATAATGTATTTCATTGCCAGAC 59.080 38.462 3.73 0.00 45.14 3.51
3759 3890 6.835488 ACCATAATGTATTTCATTGCCAGACT 59.165 34.615 3.73 0.00 45.14 3.24
3760 3891 7.342799 ACCATAATGTATTTCATTGCCAGACTT 59.657 33.333 3.73 0.00 45.14 3.01
3761 3892 8.199449 CCATAATGTATTTCATTGCCAGACTTT 58.801 33.333 3.73 0.00 45.14 2.66
3766 3897 8.800370 TGTATTTCATTGCCAGACTTTATACA 57.200 30.769 0.00 0.00 0.00 2.29
3767 3898 8.673711 TGTATTTCATTGCCAGACTTTATACAC 58.326 33.333 0.00 0.00 0.00 2.90
3768 3899 7.701539 ATTTCATTGCCAGACTTTATACACA 57.298 32.000 0.00 0.00 0.00 3.72
3769 3900 7.701539 TTTCATTGCCAGACTTTATACACAT 57.298 32.000 0.00 0.00 0.00 3.21
3770 3901 6.682423 TCATTGCCAGACTTTATACACATG 57.318 37.500 0.00 0.00 0.00 3.21
3771 3902 6.179756 TCATTGCCAGACTTTATACACATGT 58.820 36.000 0.00 0.00 0.00 3.21
3772 3903 7.334858 TCATTGCCAGACTTTATACACATGTA 58.665 34.615 0.00 0.00 34.67 2.29
3773 3904 7.495606 TCATTGCCAGACTTTATACACATGTAG 59.504 37.037 0.00 0.00 33.52 2.74
3774 3905 6.538945 TGCCAGACTTTATACACATGTAGA 57.461 37.500 0.00 0.00 33.52 2.59
3775 3906 6.941857 TGCCAGACTTTATACACATGTAGAA 58.058 36.000 0.00 0.00 33.52 2.10
3776 3907 7.564793 TGCCAGACTTTATACACATGTAGAAT 58.435 34.615 0.00 0.00 32.59 2.40
3777 3908 8.700973 TGCCAGACTTTATACACATGTAGAATA 58.299 33.333 0.00 0.00 32.59 1.75
3778 3909 8.979574 GCCAGACTTTATACACATGTAGAATAC 58.020 37.037 0.00 0.00 43.42 1.89
3895 4026 1.070309 GCCAAAAGCTCGCGATCTATG 60.070 52.381 13.56 14.47 38.99 2.23
3911 4042 7.379750 GCGATCTATGTTCTATACCCTTTTCT 58.620 38.462 0.00 0.00 0.00 2.52
3960 4092 5.105716 CCACATATAATACTCCCTCTGTCCG 60.106 48.000 0.00 0.00 0.00 4.79
4014 4146 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4128 4273 1.427368 ACACTCCCTTGGGCACAATAA 59.573 47.619 0.00 0.00 35.73 1.40
4129 4274 2.158385 ACACTCCCTTGGGCACAATAAA 60.158 45.455 0.00 0.00 35.73 1.40
4130 4275 2.896685 CACTCCCTTGGGCACAATAAAA 59.103 45.455 0.00 0.00 35.73 1.52
4131 4276 2.897326 ACTCCCTTGGGCACAATAAAAC 59.103 45.455 0.00 0.00 35.73 2.43
4132 4277 3.165071 CTCCCTTGGGCACAATAAAACT 58.835 45.455 0.00 0.00 35.73 2.66
4133 4278 3.578282 CTCCCTTGGGCACAATAAAACTT 59.422 43.478 0.00 0.00 35.73 2.66
4134 4279 3.576550 TCCCTTGGGCACAATAAAACTTC 59.423 43.478 0.00 0.00 35.73 3.01
4135 4280 3.578282 CCCTTGGGCACAATAAAACTTCT 59.422 43.478 0.00 0.00 35.73 2.85
4136 4281 4.559153 CCTTGGGCACAATAAAACTTCTG 58.441 43.478 0.00 0.00 35.73 3.02
4137 4282 4.039124 CCTTGGGCACAATAAAACTTCTGT 59.961 41.667 0.00 0.00 35.73 3.41
4138 4283 5.453198 CCTTGGGCACAATAAAACTTCTGTT 60.453 40.000 0.00 0.00 35.73 3.16
4139 4284 6.048509 CTTGGGCACAATAAAACTTCTGTTT 58.951 36.000 0.00 0.00 40.77 2.83
4140 4285 5.355596 TGGGCACAATAAAACTTCTGTTTG 58.644 37.500 0.00 0.00 44.70 2.93
4141 4286 4.749598 GGGCACAATAAAACTTCTGTTTGG 59.250 41.667 0.00 0.00 44.70 3.28
4142 4287 5.452636 GGGCACAATAAAACTTCTGTTTGGA 60.453 40.000 0.00 0.00 44.70 3.53
4143 4288 6.223120 GGCACAATAAAACTTCTGTTTGGAT 58.777 36.000 0.00 0.00 44.70 3.41
4144 4289 6.146021 GGCACAATAAAACTTCTGTTTGGATG 59.854 38.462 0.00 0.00 44.70 3.51
4145 4290 6.146021 GCACAATAAAACTTCTGTTTGGATGG 59.854 38.462 0.00 0.00 44.70 3.51
4146 4291 7.209475 CACAATAAAACTTCTGTTTGGATGGT 58.791 34.615 0.00 0.00 44.70 3.55
4147 4292 7.382218 CACAATAAAACTTCTGTTTGGATGGTC 59.618 37.037 0.00 0.00 44.70 4.02
4148 4293 4.937201 AAAACTTCTGTTTGGATGGTCC 57.063 40.909 0.00 0.00 44.70 4.46
4149 4294 3.593442 AACTTCTGTTTGGATGGTCCA 57.407 42.857 0.00 0.00 46.61 4.02
4160 4305 4.812403 TGGATGGTCCATGTCCATAATT 57.188 40.909 9.76 0.16 42.67 1.40
4161 4306 5.141455 TGGATGGTCCATGTCCATAATTT 57.859 39.130 9.76 0.00 42.67 1.82
4162 4307 5.527385 TGGATGGTCCATGTCCATAATTTT 58.473 37.500 9.76 0.00 42.67 1.82
4163 4308 5.963253 TGGATGGTCCATGTCCATAATTTTT 59.037 36.000 9.76 0.00 42.67 1.94
4189 4334 9.927668 TTTTCTTGGTTTATGAAATGATTCTCC 57.072 29.630 0.00 0.00 36.48 3.71
4190 4335 8.648698 TTCTTGGTTTATGAAATGATTCTCCA 57.351 30.769 0.00 0.00 36.48 3.86
4191 4336 8.827832 TCTTGGTTTATGAAATGATTCTCCAT 57.172 30.769 0.00 0.00 36.48 3.41
4192 4337 9.258629 TCTTGGTTTATGAAATGATTCTCCATT 57.741 29.630 0.00 0.00 38.30 3.16
4193 4338 9.880157 CTTGGTTTATGAAATGATTCTCCATTT 57.120 29.630 0.00 0.00 46.09 2.32
4195 4340 9.656040 TGGTTTATGAAATGATTCTCCATTTTG 57.344 29.630 0.00 0.00 44.19 2.44
4196 4341 9.657419 GGTTTATGAAATGATTCTCCATTTTGT 57.343 29.630 0.00 0.00 44.19 2.83
4202 4347 9.519191 TGAAATGATTCTCCATTTTGTAAGAGA 57.481 29.630 0.00 0.00 44.19 3.10
4273 4418 6.414987 GCTTTTTCCGAATGCATTGATAGTAC 59.585 38.462 18.59 0.00 0.00 2.73
4360 4508 2.509111 TACTGACATGCTGGCGCG 60.509 61.111 0.00 0.00 39.65 6.86
4581 4730 2.369860 TGAGTGTTGATGAACTCCAGCT 59.630 45.455 0.00 0.00 41.79 4.24
4627 4776 3.957260 CACAGGGTGCTTCAGACG 58.043 61.111 0.00 0.00 0.00 4.18
4680 4829 5.030147 TGAAGTTCCCTTCTAATCAGGCTA 58.970 41.667 0.00 0.00 46.07 3.93
4901 5050 7.706179 TCTCATGTTTTCAGAAACCAAATGTTC 59.294 33.333 0.00 0.00 43.57 3.18
5020 5176 9.492973 AGAAGAAATTATTCATGTTTTTGTGGG 57.507 29.630 3.09 0.00 38.06 4.61
5130 5287 5.705609 TGAGCACCATCCTTTTAAAAGAC 57.294 39.130 26.11 8.65 38.28 3.01
5149 5306 6.683974 AAGACGCAAGCAAATATAACAGAT 57.316 33.333 0.00 0.00 45.62 2.90
5153 5310 7.012704 AGACGCAAGCAAATATAACAGATCATT 59.987 33.333 0.00 0.00 45.62 2.57
5500 5663 7.367285 TCCCATTTGACGAAATAAAAACTCAG 58.633 34.615 0.00 0.00 30.20 3.35
5513 5676 8.894768 AATAAAAACTCAGTGGCTAGCTATAG 57.105 34.615 15.72 10.20 0.00 1.31
5515 5678 6.739331 AAAACTCAGTGGCTAGCTATAGAT 57.261 37.500 15.72 0.00 0.00 1.98
5516 5679 5.720371 AACTCAGTGGCTAGCTATAGATG 57.280 43.478 15.72 6.92 0.00 2.90
5517 5680 4.735369 ACTCAGTGGCTAGCTATAGATGT 58.265 43.478 15.72 7.98 0.00 3.06
5518 5681 5.144100 ACTCAGTGGCTAGCTATAGATGTT 58.856 41.667 15.72 0.00 0.00 2.71
5520 5683 5.140454 TCAGTGGCTAGCTATAGATGTTCA 58.860 41.667 15.72 0.00 0.00 3.18
5620 5857 4.151883 TGAAGGGAAAAGCTTGCACTTAT 58.848 39.130 14.89 0.00 0.00 1.73
5652 5889 7.524717 AAGCTGTTGGAAGTTAAACACATAT 57.475 32.000 0.00 0.00 32.98 1.78
5716 5953 7.839705 TGAAGTACCCTTGTCTGTAGAGATAAT 59.160 37.037 0.00 0.00 29.77 1.28
5844 6081 7.919690 TCAACTTTCTTTAGTCAACATCTGTG 58.080 34.615 0.00 0.00 0.00 3.66
5859 6096 7.698836 AACATCTGTGTTGTTATTTTTCAGC 57.301 32.000 0.00 0.00 46.43 4.26
5875 6112 0.935898 CAGCGCAGTCCATCTGAATC 59.064 55.000 11.47 0.00 46.27 2.52
6015 6252 3.515630 CGTCATGACTGCATTACACTCT 58.484 45.455 22.95 0.00 29.87 3.24
6101 6346 8.660373 CAAGAGCTTCTACGAAATTATCAAGTT 58.340 33.333 0.00 0.00 0.00 2.66
6102 6347 8.190888 AGAGCTTCTACGAAATTATCAAGTTG 57.809 34.615 0.00 0.00 0.00 3.16
6136 6381 1.219724 TCCTTATACTCCTTCCGCCCT 59.780 52.381 0.00 0.00 0.00 5.19
6184 6432 3.559238 AGCTTGCAAAAACGTCCTATG 57.441 42.857 0.00 0.00 0.00 2.23
6201 6449 3.389983 CCTATGTTATGGAACGGAGGGAA 59.610 47.826 0.00 0.00 38.51 3.97
6231 6479 8.503458 TCTGTACTTAGTGACTTGGTATCTAC 57.497 38.462 0.00 0.00 0.00 2.59
6254 6502 4.220821 CCAGTGGACAGCGGTATAGATATT 59.779 45.833 1.68 0.00 0.00 1.28
6287 6535 5.039920 TCCTGGTTGATATTGATGTGGAG 57.960 43.478 0.00 0.00 0.00 3.86
6316 6564 4.026228 CGTATGAGCTGAGCTGTGTTAATG 60.026 45.833 13.71 0.00 39.88 1.90
6415 6664 6.216456 ACTCAAAGAGGTTTAGATTGGGATCT 59.784 38.462 0.00 0.00 38.85 2.75
6418 6667 8.213679 TCAAAGAGGTTTAGATTGGGATCTATG 58.786 37.037 0.00 0.00 42.81 2.23
6530 6779 1.062488 AAGCCTGGACCCAGACTGTT 61.062 55.000 17.19 2.68 46.30 3.16
6541 6790 4.395625 ACCCAGACTGTTTTTAGGTTAGC 58.604 43.478 0.93 0.00 0.00 3.09
6624 6874 3.385433 TCGGTTCGGATTTGAGCCTAATA 59.615 43.478 0.00 0.00 37.12 0.98
6632 6882 7.378966 TCGGATTTGAGCCTAATACTGATTAG 58.621 38.462 0.00 0.00 42.93 1.73
6703 7007 9.926158 CTATTGACATGATCTTAGCATCTACTT 57.074 33.333 0.00 0.00 0.00 2.24
6705 7009 9.703892 ATTGACATGATCTTAGCATCTACTTAC 57.296 33.333 0.00 0.00 0.00 2.34
6706 7010 8.470657 TGACATGATCTTAGCATCTACTTACT 57.529 34.615 0.00 0.00 0.00 2.24
6790 7354 9.707957 ACCATATATTCTGGTTGGTTCATAAAA 57.292 29.630 4.27 0.00 44.67 1.52
6798 7362 7.050377 TCTGGTTGGTTCATAAAATTTTGCAA 58.950 30.769 13.76 0.00 0.00 4.08
6810 7376 9.008289 CATAAAATTTTGCAAAAACTTGTGGTC 57.992 29.630 27.10 0.00 0.00 4.02
6950 7516 1.000521 CAGATTGCCCTGCCTTCCA 60.001 57.895 0.00 0.00 0.00 3.53
6969 7535 2.159627 CCATGGAAGTAACGACAGTTGC 59.840 50.000 5.56 0.00 41.35 4.17
7029 7595 2.239907 AGAAGCTCTTGGGGTTATGGAC 59.760 50.000 0.00 0.00 0.00 4.02
7142 7708 3.508845 ACTGTTGGTGTTTGCTAGGAT 57.491 42.857 0.00 0.00 0.00 3.24
7290 7856 6.708054 CCTTCCGTCTCAAAATATAAGCTCAT 59.292 38.462 0.00 0.00 0.00 2.90
7291 7857 7.227512 CCTTCCGTCTCAAAATATAAGCTCATT 59.772 37.037 0.00 0.00 0.00 2.57
7292 7858 8.506168 TTCCGTCTCAAAATATAAGCTCATTT 57.494 30.769 0.00 0.00 0.00 2.32
7293 7859 8.506168 TCCGTCTCAAAATATAAGCTCATTTT 57.494 30.769 7.47 7.47 35.30 1.82
7294 7860 8.956426 TCCGTCTCAAAATATAAGCTCATTTTT 58.044 29.630 9.65 0.00 33.23 1.94
7295 7861 9.013490 CCGTCTCAAAATATAAGCTCATTTTTG 57.987 33.333 13.62 13.62 38.17 2.44
7296 7862 9.773328 CGTCTCAAAATATAAGCTCATTTTTGA 57.227 29.630 18.08 18.08 41.45 2.69
7594 8160 2.977772 GAGCATCTACAGCTGGACTT 57.022 50.000 19.93 0.00 43.58 3.01
7596 8162 3.976169 GAGCATCTACAGCTGGACTTAG 58.024 50.000 19.93 10.58 43.58 2.18
7597 8163 2.102252 AGCATCTACAGCTGGACTTAGC 59.898 50.000 19.93 14.16 41.61 3.09
7598 8164 2.159043 GCATCTACAGCTGGACTTAGCA 60.159 50.000 19.93 1.85 46.07 3.49
7599 8165 3.679917 GCATCTACAGCTGGACTTAGCAA 60.680 47.826 19.93 0.00 46.07 3.91
7600 8166 4.507710 CATCTACAGCTGGACTTAGCAAA 58.492 43.478 19.93 0.00 46.07 3.68
7601 8167 4.826274 TCTACAGCTGGACTTAGCAAAT 57.174 40.909 19.93 0.00 46.07 2.32
7602 8168 4.759782 TCTACAGCTGGACTTAGCAAATC 58.240 43.478 19.93 0.00 46.07 2.17
7603 8169 3.423539 ACAGCTGGACTTAGCAAATCA 57.576 42.857 19.93 0.00 46.07 2.57
7604 8170 3.341823 ACAGCTGGACTTAGCAAATCAG 58.658 45.455 19.93 0.00 46.07 2.90
7605 8171 2.097142 CAGCTGGACTTAGCAAATCAGC 59.903 50.000 5.57 0.00 46.07 4.26
7606 8172 1.403323 GCTGGACTTAGCAAATCAGCC 59.597 52.381 0.00 0.00 43.17 4.85
7607 8173 2.019984 CTGGACTTAGCAAATCAGCCC 58.980 52.381 0.00 0.00 34.23 5.19
7608 8174 1.340991 TGGACTTAGCAAATCAGCCCC 60.341 52.381 0.00 0.00 34.23 5.80
7609 8175 1.393603 GACTTAGCAAATCAGCCCCC 58.606 55.000 0.00 0.00 34.23 5.40
7623 8189 2.123897 CCCCCTAAATGCCCGTGG 60.124 66.667 0.00 0.00 0.00 4.94
7624 8190 2.685534 CCCCCTAAATGCCCGTGGA 61.686 63.158 0.00 0.00 0.00 4.02
7625 8191 1.536676 CCCCTAAATGCCCGTGGAT 59.463 57.895 0.00 0.00 0.00 3.41
7626 8192 0.823356 CCCCTAAATGCCCGTGGATG 60.823 60.000 0.00 0.00 0.00 3.51
7627 8193 0.106719 CCCTAAATGCCCGTGGATGT 60.107 55.000 0.00 0.00 0.00 3.06
7628 8194 1.308998 CCTAAATGCCCGTGGATGTC 58.691 55.000 0.00 0.00 0.00 3.06
7629 8195 1.308998 CTAAATGCCCGTGGATGTCC 58.691 55.000 0.00 0.00 0.00 4.02
7630 8196 0.106918 TAAATGCCCGTGGATGTCCC 60.107 55.000 0.00 0.00 34.29 4.46
7631 8197 2.854300 AAATGCCCGTGGATGTCCCC 62.854 60.000 0.00 0.00 34.29 4.81
7635 8201 4.157120 CCGTGGATGTCCCCGGTC 62.157 72.222 13.87 0.00 41.15 4.79
7636 8202 3.387091 CGTGGATGTCCCCGGTCA 61.387 66.667 0.00 0.00 34.29 4.02
7637 8203 2.584608 GTGGATGTCCCCGGTCAG 59.415 66.667 0.00 0.00 34.29 3.51
7638 8204 2.121832 TGGATGTCCCCGGTCAGT 59.878 61.111 0.00 0.00 34.29 3.41
7639 8205 2.290287 TGGATGTCCCCGGTCAGTG 61.290 63.158 0.00 0.00 34.29 3.66
7640 8206 2.291043 GGATGTCCCCGGTCAGTGT 61.291 63.158 0.00 0.00 0.00 3.55
7641 8207 1.218316 GATGTCCCCGGTCAGTGTC 59.782 63.158 0.00 0.00 0.00 3.67
7642 8208 2.240162 GATGTCCCCGGTCAGTGTCC 62.240 65.000 0.00 0.00 0.00 4.02
7643 8209 2.920912 GTCCCCGGTCAGTGTCCA 60.921 66.667 0.00 0.00 0.00 4.02
7644 8210 2.121832 TCCCCGGTCAGTGTCCAT 59.878 61.111 0.00 0.00 0.00 3.41
7645 8211 2.268920 CCCCGGTCAGTGTCCATG 59.731 66.667 0.00 0.00 0.00 3.66
7646 8212 2.436646 CCCGGTCAGTGTCCATGC 60.437 66.667 0.00 0.00 0.00 4.06
7647 8213 2.815211 CCGGTCAGTGTCCATGCG 60.815 66.667 7.21 0.00 0.00 4.73
7648 8214 2.048222 CGGTCAGTGTCCATGCGT 60.048 61.111 7.21 0.00 0.00 5.24
7649 8215 2.382746 CGGTCAGTGTCCATGCGTG 61.383 63.158 7.21 0.00 0.00 5.34
7650 8216 2.680913 GGTCAGTGTCCATGCGTGC 61.681 63.158 0.00 0.00 0.00 5.34
7651 8217 1.960763 GTCAGTGTCCATGCGTGCA 60.961 57.895 0.00 0.00 0.00 4.57
7652 8218 1.003476 TCAGTGTCCATGCGTGCAT 60.003 52.632 0.51 0.51 37.08 3.96
7662 8228 3.712162 CATGCGTGCATGTAGCTATAC 57.288 47.619 23.27 0.00 46.20 1.47
7663 8229 2.880963 TGCGTGCATGTAGCTATACA 57.119 45.000 7.93 0.00 45.73 2.29
7664 8230 2.469826 TGCGTGCATGTAGCTATACAC 58.530 47.619 7.93 2.72 44.51 2.90
7665 8231 2.100749 TGCGTGCATGTAGCTATACACT 59.899 45.455 7.93 0.00 44.51 3.55
7666 8232 3.123804 GCGTGCATGTAGCTATACACTT 58.876 45.455 7.93 0.00 44.51 3.16
7667 8233 3.182572 GCGTGCATGTAGCTATACACTTC 59.817 47.826 7.93 0.00 44.51 3.01
7668 8234 4.359706 CGTGCATGTAGCTATACACTTCA 58.640 43.478 0.00 0.00 44.51 3.02
7669 8235 4.984785 CGTGCATGTAGCTATACACTTCAT 59.015 41.667 0.00 0.00 44.51 2.57
7670 8236 5.463392 CGTGCATGTAGCTATACACTTCATT 59.537 40.000 0.00 0.00 44.51 2.57
7671 8237 6.018751 CGTGCATGTAGCTATACACTTCATTT 60.019 38.462 0.00 0.00 44.51 2.32
7672 8238 7.465916 CGTGCATGTAGCTATACACTTCATTTT 60.466 37.037 0.00 0.00 44.51 1.82
7673 8239 7.852945 GTGCATGTAGCTATACACTTCATTTTC 59.147 37.037 0.00 0.00 44.51 2.29
7674 8240 7.770433 TGCATGTAGCTATACACTTCATTTTCT 59.230 33.333 0.00 0.00 44.51 2.52
7675 8241 8.279103 GCATGTAGCTATACACTTCATTTTCTC 58.721 37.037 0.00 0.00 44.51 2.87
7676 8242 8.768955 CATGTAGCTATACACTTCATTTTCTCC 58.231 37.037 0.00 0.00 44.51 3.71
7677 8243 7.272978 TGTAGCTATACACTTCATTTTCTCCC 58.727 38.462 0.00 0.00 36.98 4.30
7678 8244 6.567602 AGCTATACACTTCATTTTCTCCCT 57.432 37.500 0.00 0.00 0.00 4.20
7679 8245 6.352516 AGCTATACACTTCATTTTCTCCCTG 58.647 40.000 0.00 0.00 0.00 4.45
7680 8246 5.529060 GCTATACACTTCATTTTCTCCCTGG 59.471 44.000 0.00 0.00 0.00 4.45
7681 8247 3.884037 ACACTTCATTTTCTCCCTGGT 57.116 42.857 0.00 0.00 0.00 4.00
7682 8248 4.993705 ACACTTCATTTTCTCCCTGGTA 57.006 40.909 0.00 0.00 0.00 3.25
7683 8249 5.520748 ACACTTCATTTTCTCCCTGGTAT 57.479 39.130 0.00 0.00 0.00 2.73
7684 8250 6.636454 ACACTTCATTTTCTCCCTGGTATA 57.364 37.500 0.00 0.00 0.00 1.47
7685 8251 7.213178 ACACTTCATTTTCTCCCTGGTATAT 57.787 36.000 0.00 0.00 0.00 0.86
7686 8252 7.056635 ACACTTCATTTTCTCCCTGGTATATG 58.943 38.462 0.00 0.00 0.00 1.78
7687 8253 7.056635 CACTTCATTTTCTCCCTGGTATATGT 58.943 38.462 0.00 0.00 0.00 2.29
7688 8254 7.227512 CACTTCATTTTCTCCCTGGTATATGTC 59.772 40.741 0.00 0.00 0.00 3.06
7689 8255 6.187727 TCATTTTCTCCCTGGTATATGTCC 57.812 41.667 0.00 0.00 0.00 4.02
7690 8256 5.669904 TCATTTTCTCCCTGGTATATGTCCA 59.330 40.000 0.00 2.33 0.00 4.02
7691 8257 6.332635 TCATTTTCTCCCTGGTATATGTCCAT 59.667 38.462 0.00 0.00 34.26 3.41
7692 8258 5.825593 TTTCTCCCTGGTATATGTCCATC 57.174 43.478 0.00 0.00 34.26 3.51
7693 8259 3.791320 TCTCCCTGGTATATGTCCATCC 58.209 50.000 0.00 0.00 34.26 3.51
7694 8260 3.143933 TCTCCCTGGTATATGTCCATCCA 59.856 47.826 0.00 0.00 34.26 3.41
7695 8261 4.107072 CTCCCTGGTATATGTCCATCCAT 58.893 47.826 0.00 0.00 34.26 3.41
7696 8262 3.845992 TCCCTGGTATATGTCCATCCATG 59.154 47.826 0.00 0.00 34.26 3.66
7697 8263 3.845992 CCCTGGTATATGTCCATCCATGA 59.154 47.826 0.00 0.00 34.26 3.07
7698 8264 4.080695 CCCTGGTATATGTCCATCCATGAG 60.081 50.000 0.00 0.00 34.26 2.90
7699 8265 4.779489 CCTGGTATATGTCCATCCATGAGA 59.221 45.833 0.00 0.00 34.26 3.27
7700 8266 5.427806 CCTGGTATATGTCCATCCATGAGAT 59.572 44.000 0.00 0.00 34.26 2.75
7701 8267 6.069789 CCTGGTATATGTCCATCCATGAGATT 60.070 42.308 0.00 0.00 34.26 2.40
7702 8268 6.714278 TGGTATATGTCCATCCATGAGATTG 58.286 40.000 0.00 0.00 30.59 2.67
7703 8269 6.501453 TGGTATATGTCCATCCATGAGATTGA 59.499 38.462 0.00 0.00 30.59 2.57
7704 8270 7.183293 TGGTATATGTCCATCCATGAGATTGAT 59.817 37.037 0.00 0.00 29.94 2.57
7705 8271 7.498239 GGTATATGTCCATCCATGAGATTGATG 59.502 40.741 0.00 0.00 36.49 3.07
7711 8277 3.150458 TCCATGAGATTGATGGGATGC 57.850 47.619 0.00 0.00 40.84 3.91
7712 8278 2.444010 TCCATGAGATTGATGGGATGCA 59.556 45.455 0.00 0.00 40.84 3.96
7713 8279 2.820197 CCATGAGATTGATGGGATGCAG 59.180 50.000 0.00 0.00 37.33 4.41
7714 8280 3.497942 CCATGAGATTGATGGGATGCAGA 60.498 47.826 0.00 0.00 37.33 4.26
7715 8281 3.487120 TGAGATTGATGGGATGCAGAG 57.513 47.619 0.00 0.00 0.00 3.35
7716 8282 3.043418 TGAGATTGATGGGATGCAGAGA 58.957 45.455 0.00 0.00 0.00 3.10
7717 8283 3.071167 TGAGATTGATGGGATGCAGAGAG 59.929 47.826 0.00 0.00 0.00 3.20
7718 8284 3.315596 AGATTGATGGGATGCAGAGAGA 58.684 45.455 0.00 0.00 0.00 3.10
7719 8285 3.325425 AGATTGATGGGATGCAGAGAGAG 59.675 47.826 0.00 0.00 0.00 3.20
7720 8286 2.466547 TGATGGGATGCAGAGAGAGA 57.533 50.000 0.00 0.00 0.00 3.10
7721 8287 2.755686 TGATGGGATGCAGAGAGAGAA 58.244 47.619 0.00 0.00 0.00 2.87
7722 8288 3.109928 TGATGGGATGCAGAGAGAGAAA 58.890 45.455 0.00 0.00 0.00 2.52
7723 8289 3.134262 TGATGGGATGCAGAGAGAGAAAG 59.866 47.826 0.00 0.00 0.00 2.62
7724 8290 2.825223 TGGGATGCAGAGAGAGAAAGA 58.175 47.619 0.00 0.00 0.00 2.52
7725 8291 3.176411 TGGGATGCAGAGAGAGAAAGAA 58.824 45.455 0.00 0.00 0.00 2.52
7726 8292 3.584406 TGGGATGCAGAGAGAGAAAGAAA 59.416 43.478 0.00 0.00 0.00 2.52
7727 8293 4.042062 TGGGATGCAGAGAGAGAAAGAAAA 59.958 41.667 0.00 0.00 0.00 2.29
7728 8294 5.006386 GGGATGCAGAGAGAGAAAGAAAAA 58.994 41.667 0.00 0.00 0.00 1.94
7752 8318 7.855784 AAAAACTCCCCTTGATTACATTCTT 57.144 32.000 0.00 0.00 0.00 2.52
7753 8319 7.855784 AAAACTCCCCTTGATTACATTCTTT 57.144 32.000 0.00 0.00 0.00 2.52
7754 8320 7.855784 AAACTCCCCTTGATTACATTCTTTT 57.144 32.000 0.00 0.00 0.00 2.27
7755 8321 8.950007 AAACTCCCCTTGATTACATTCTTTTA 57.050 30.769 0.00 0.00 0.00 1.52
7756 8322 8.950007 AACTCCCCTTGATTACATTCTTTTAA 57.050 30.769 0.00 0.00 0.00 1.52
7757 8323 9.547279 AACTCCCCTTGATTACATTCTTTTAAT 57.453 29.630 0.00 0.00 0.00 1.40
7758 8324 8.971073 ACTCCCCTTGATTACATTCTTTTAATG 58.029 33.333 0.00 0.00 0.00 1.90
7759 8325 7.781056 TCCCCTTGATTACATTCTTTTAATGC 58.219 34.615 0.00 0.00 0.00 3.56
7760 8326 7.398618 TCCCCTTGATTACATTCTTTTAATGCA 59.601 33.333 0.00 0.00 0.00 3.96
7761 8327 8.040132 CCCCTTGATTACATTCTTTTAATGCAA 58.960 33.333 0.00 0.00 0.00 4.08
7762 8328 9.434420 CCCTTGATTACATTCTTTTAATGCAAA 57.566 29.630 0.00 0.00 0.00 3.68
7765 8331 9.434420 TTGATTACATTCTTTTAATGCAAAGGG 57.566 29.630 0.00 0.00 34.90 3.95
7766 8332 8.592809 TGATTACATTCTTTTAATGCAAAGGGT 58.407 29.630 0.00 0.00 34.90 4.34
7767 8333 9.435688 GATTACATTCTTTTAATGCAAAGGGTT 57.564 29.630 0.00 0.00 34.90 4.11
7768 8334 8.600449 TTACATTCTTTTAATGCAAAGGGTTG 57.400 30.769 0.00 0.00 34.90 3.77
7769 8335 5.997129 ACATTCTTTTAATGCAAAGGGTTGG 59.003 36.000 0.00 0.00 34.90 3.77
7770 8336 5.878406 TTCTTTTAATGCAAAGGGTTGGA 57.122 34.783 0.00 0.00 39.64 3.53
7771 8337 6.432403 TTCTTTTAATGCAAAGGGTTGGAT 57.568 33.333 0.00 0.00 46.70 3.41
7780 8346 6.524101 TGCAAAGGGTTGGATTATTTACTC 57.476 37.500 0.00 0.00 35.10 2.59
7781 8347 5.420739 TGCAAAGGGTTGGATTATTTACTCC 59.579 40.000 0.00 0.00 35.10 3.85
7782 8348 5.420739 GCAAAGGGTTGGATTATTTACTCCA 59.579 40.000 0.00 0.00 39.78 3.86
7783 8349 6.098266 GCAAAGGGTTGGATTATTTACTCCAT 59.902 38.462 0.00 0.00 41.09 3.41
7784 8350 7.684428 GCAAAGGGTTGGATTATTTACTCCATC 60.684 40.741 0.00 0.00 41.09 3.51
7785 8351 6.848562 AGGGTTGGATTATTTACTCCATCT 57.151 37.500 0.00 0.00 41.09 2.90
7786 8352 7.947782 AGGGTTGGATTATTTACTCCATCTA 57.052 36.000 0.00 0.00 41.09 1.98
7787 8353 8.525729 AGGGTTGGATTATTTACTCCATCTAT 57.474 34.615 0.00 0.00 41.09 1.98
7788 8354 9.629649 AGGGTTGGATTATTTACTCCATCTATA 57.370 33.333 0.00 0.00 41.09 1.31
7826 8392 9.863845 GAGCATTTAGAATACTCTTATACTCCC 57.136 37.037 0.00 0.00 32.70 4.30
7827 8393 9.608718 AGCATTTAGAATACTCTTATACTCCCT 57.391 33.333 0.00 0.00 32.70 4.20
7828 8394 9.863845 GCATTTAGAATACTCTTATACTCCCTC 57.136 37.037 0.00 0.00 32.70 4.30
7838 8404 8.896722 ACTCTTATACTCCCTCTGTAAAGAAA 57.103 34.615 0.00 0.00 0.00 2.52
7839 8405 9.495382 ACTCTTATACTCCCTCTGTAAAGAAAT 57.505 33.333 0.00 0.00 0.00 2.17
7847 8413 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
7848 8414 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
7849 8415 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
7850 8416 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
7900 8466 9.774413 AACACTCTTATATTTATTTACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
7901 8467 9.151177 ACACTCTTATATTTATTTACGGAGGGA 57.849 33.333 0.00 0.00 0.00 4.20
7902 8468 9.640963 CACTCTTATATTTATTTACGGAGGGAG 57.359 37.037 0.00 0.00 0.00 4.30
7903 8469 9.377238 ACTCTTATATTTATTTACGGAGGGAGT 57.623 33.333 0.00 0.00 0.00 3.85
7912 8478 9.991906 TTTATTTACGGAGGGAGTATTAGATTG 57.008 33.333 0.00 0.00 0.00 2.67
7913 8479 5.464030 TTACGGAGGGAGTATTAGATTGC 57.536 43.478 0.00 0.00 0.00 3.56
7914 8480 3.577919 ACGGAGGGAGTATTAGATTGCT 58.422 45.455 0.00 0.00 0.00 3.91
7915 8481 4.737578 ACGGAGGGAGTATTAGATTGCTA 58.262 43.478 0.00 0.00 0.00 3.49
7916 8482 5.334421 ACGGAGGGAGTATTAGATTGCTAT 58.666 41.667 0.00 0.00 0.00 2.97
7917 8483 5.186021 ACGGAGGGAGTATTAGATTGCTATG 59.814 44.000 0.00 0.00 0.00 2.23
7918 8484 5.394663 CGGAGGGAGTATTAGATTGCTATGG 60.395 48.000 0.00 0.00 0.00 2.74
7919 8485 5.485708 GGAGGGAGTATTAGATTGCTATGGT 59.514 44.000 0.00 0.00 0.00 3.55
7920 8486 6.668283 GGAGGGAGTATTAGATTGCTATGGTA 59.332 42.308 0.00 0.00 0.00 3.25
7921 8487 7.363968 GGAGGGAGTATTAGATTGCTATGGTAC 60.364 44.444 0.00 0.00 0.00 3.34
7937 8503 3.659786 TGGTACATAATATGACAGCCGC 58.340 45.455 7.33 0.00 0.00 6.53
7938 8504 2.666508 GGTACATAATATGACAGCCGCG 59.333 50.000 7.33 0.00 0.00 6.46
7939 8505 2.526304 ACATAATATGACAGCCGCGT 57.474 45.000 7.33 0.00 0.00 6.01
7940 8506 2.404215 ACATAATATGACAGCCGCGTC 58.596 47.619 7.33 0.00 36.40 5.19
7941 8507 1.386748 CATAATATGACAGCCGCGTCG 59.613 52.381 4.92 0.00 38.84 5.12
7942 8508 0.937699 TAATATGACAGCCGCGTCGC 60.938 55.000 7.29 7.29 38.84 5.19
7943 8509 2.629050 AATATGACAGCCGCGTCGCT 62.629 55.000 16.36 4.34 40.65 4.93
7952 8518 2.579518 CGCGTCGCTGCTCACATA 60.580 61.111 16.36 0.00 0.00 2.29
7953 8519 1.946156 CGCGTCGCTGCTCACATAT 60.946 57.895 16.36 0.00 0.00 1.78
7954 8520 1.849306 GCGTCGCTGCTCACATATC 59.151 57.895 10.68 0.00 0.00 1.63
7955 8521 0.871592 GCGTCGCTGCTCACATATCA 60.872 55.000 10.68 0.00 0.00 2.15
7956 8522 1.775869 CGTCGCTGCTCACATATCAT 58.224 50.000 0.00 0.00 0.00 2.45
7957 8523 2.922335 GCGTCGCTGCTCACATATCATA 60.922 50.000 10.68 0.00 0.00 2.15
7958 8524 2.913590 CGTCGCTGCTCACATATCATAG 59.086 50.000 0.00 0.00 0.00 2.23
7959 8525 3.610349 CGTCGCTGCTCACATATCATAGT 60.610 47.826 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 109 1.228769 GGCCGGAAAGGAAAAGGGT 60.229 57.895 5.05 0.00 45.00 4.34
731 746 4.437587 GGGGGTCTCGAGACGGGA 62.438 72.222 33.07 3.18 45.65 5.14
759 774 2.060980 GTGGAGTGGAGGAGGCGAT 61.061 63.158 0.00 0.00 0.00 4.58
977 1003 3.578272 CGCGTCCCTCTCTCCGAG 61.578 72.222 0.00 0.00 39.57 4.63
978 1004 4.091939 TCGCGTCCCTCTCTCCGA 62.092 66.667 5.77 0.00 0.00 4.55
1187 1213 3.771160 CGGAGGGGGAAGGACGTG 61.771 72.222 0.00 0.00 0.00 4.49
1208 1234 3.839432 GAGGGGAGGAACGGAGCG 61.839 72.222 0.00 0.00 0.00 5.03
1209 1235 3.471806 GGAGGGGAGGAACGGAGC 61.472 72.222 0.00 0.00 0.00 4.70
1213 1253 2.359967 GGACTGGAGGGGAGGAACG 61.360 68.421 0.00 0.00 0.00 3.95
1227 1267 0.609681 AGACGAGGCGAGAAAGGACT 60.610 55.000 0.00 0.00 0.00 3.85
1232 1272 0.168348 CGAGAAGACGAGGCGAGAAA 59.832 55.000 0.00 0.00 35.09 2.52
1253 1293 1.655329 CAGATCTACGGGCCGTCTC 59.345 63.158 37.83 27.95 41.54 3.36
1254 1294 2.491022 GCAGATCTACGGGCCGTCT 61.491 63.158 37.83 23.65 41.54 4.18
1344 1384 0.036306 GAAACTGACATGGGACCCGT 59.964 55.000 5.91 1.59 0.00 5.28
1353 1393 0.944386 AAAGCACGCGAAACTGACAT 59.056 45.000 15.93 0.00 0.00 3.06
1562 1602 7.461416 CGATCGGGAAAAGAAAAATGAAAATCG 60.461 37.037 7.38 0.00 0.00 3.34
1570 1612 3.181510 CGCTCGATCGGGAAAAGAAAAAT 60.182 43.478 21.68 0.00 0.00 1.82
1621 1663 1.234615 TAAACAGAAGCCGCAGCACC 61.235 55.000 0.00 0.00 43.56 5.01
1668 1712 2.096614 CGACGATAAAACACCGCAACTT 60.097 45.455 0.00 0.00 0.00 2.66
1780 1824 2.353145 GGCGATGCGACGTACGAT 60.353 61.111 24.41 4.29 45.77 3.73
1892 1937 7.934120 CCAAACTAAGGAAGAGAAGAAAAGAGA 59.066 37.037 0.00 0.00 0.00 3.10
1903 1948 4.351874 TCACACCCAAACTAAGGAAGAG 57.648 45.455 0.00 0.00 0.00 2.85
2174 2229 2.489938 ACGGTGACATGTAAAGGCAT 57.510 45.000 0.00 0.00 0.00 4.40
2233 2288 7.515059 GCTTTTCAATGTCAACACATACACAAC 60.515 37.037 0.00 0.00 42.89 3.32
2234 2289 6.475076 GCTTTTCAATGTCAACACATACACAA 59.525 34.615 0.00 0.00 42.89 3.33
2238 2293 7.096065 GGAAAGCTTTTCAATGTCAACACATAC 60.096 37.037 14.05 0.00 42.89 2.39
2262 2317 4.716784 AGTGTATCATTTGAGTAGCTGGGA 59.283 41.667 0.00 0.00 0.00 4.37
2264 2319 7.383572 GTGATAGTGTATCATTTGAGTAGCTGG 59.616 40.741 0.00 0.00 45.96 4.85
2271 2326 9.941664 GATTTTGGTGATAGTGTATCATTTGAG 57.058 33.333 0.14 0.00 45.96 3.02
2316 2371 3.696051 TCAGCTAAACAAATGATCCCAGC 59.304 43.478 0.00 0.00 0.00 4.85
2486 2541 7.643569 ATGTTAGACAAATGCATGGTTATCA 57.356 32.000 0.00 4.27 0.00 2.15
2531 2586 5.643777 GCTGCTAATAAGAGTTCCAAGTCAA 59.356 40.000 0.00 0.00 0.00 3.18
2555 2610 5.352569 CCTTACATTTTGCTCCTACAGTCTG 59.647 44.000 0.00 0.00 0.00 3.51
2557 2612 5.351740 GTCCTTACATTTTGCTCCTACAGTC 59.648 44.000 0.00 0.00 0.00 3.51
2595 2650 1.810151 TGCACTGCGGAGGAAATTAAC 59.190 47.619 9.36 0.00 0.00 2.01
2761 2821 3.654414 AGAAAGCATCGAAAACGAGTCT 58.346 40.909 0.00 0.00 0.00 3.24
2767 2827 5.123979 ACCCTAATGAGAAAGCATCGAAAAC 59.876 40.000 0.00 0.00 0.00 2.43
2768 2828 5.123820 CACCCTAATGAGAAAGCATCGAAAA 59.876 40.000 0.00 0.00 0.00 2.29
2864 2924 3.998099 AACAGAAGAGAAAGCCAAAGC 57.002 42.857 0.00 0.00 40.32 3.51
2865 2925 9.617975 CTAAATAAACAGAAGAGAAAGCCAAAG 57.382 33.333 0.00 0.00 0.00 2.77
2897 2957 3.470645 AAGATGATACCCGTTAGTGCC 57.529 47.619 0.00 0.00 0.00 5.01
2959 3019 6.126409 ACTGAACTCTGATGTTAACCCAAAA 58.874 36.000 2.48 0.00 0.00 2.44
2960 3020 5.690865 ACTGAACTCTGATGTTAACCCAAA 58.309 37.500 2.48 0.00 0.00 3.28
3069 3145 2.024414 GGGGCAGACCATGACATTAAC 58.976 52.381 0.00 0.00 39.54 2.01
3070 3146 1.922447 AGGGGCAGACCATGACATTAA 59.078 47.619 0.00 0.00 39.54 1.40
3071 3147 1.595311 AGGGGCAGACCATGACATTA 58.405 50.000 0.00 0.00 39.54 1.90
3072 3148 2.402238 AGGGGCAGACCATGACATT 58.598 52.632 0.00 0.00 39.54 2.71
3073 3149 4.176404 AGGGGCAGACCATGACAT 57.824 55.556 0.00 0.00 39.54 3.06
3078 3154 3.983410 AGAATTATACAGGGGCAGACCAT 59.017 43.478 0.00 0.00 42.91 3.55
3079 3155 3.136443 CAGAATTATACAGGGGCAGACCA 59.864 47.826 0.00 0.00 42.91 4.02
3080 3156 3.391296 TCAGAATTATACAGGGGCAGACC 59.609 47.826 0.00 0.00 39.11 3.85
3083 3162 4.780815 TGTTCAGAATTATACAGGGGCAG 58.219 43.478 0.00 0.00 0.00 4.85
3504 3583 1.449956 CATTGGCATTTTGCGGGGG 60.450 57.895 0.00 0.00 46.21 5.40
3505 3584 1.449956 CCATTGGCATTTTGCGGGG 60.450 57.895 0.00 0.00 46.21 5.73
3506 3585 4.205287 CCATTGGCATTTTGCGGG 57.795 55.556 0.00 0.00 46.21 6.13
3644 3775 7.379262 TCATCAGTTTCAAATCACGATTTTGTG 59.621 33.333 2.24 0.00 38.84 3.33
3664 3795 4.156884 ACAGCGTTCGTACTGTTCATCAG 61.157 47.826 0.00 0.00 44.59 2.90
3665 3796 2.287970 ACAGCGTTCGTACTGTTCATCA 60.288 45.455 0.00 0.00 44.59 3.07
3666 3797 2.325761 ACAGCGTTCGTACTGTTCATC 58.674 47.619 0.00 0.00 44.59 2.92
3667 3798 2.433868 ACAGCGTTCGTACTGTTCAT 57.566 45.000 0.00 0.00 44.59 2.57
3668 3799 3.951115 ACAGCGTTCGTACTGTTCA 57.049 47.368 0.00 0.00 44.59 3.18
3672 3803 1.767289 AGTGAACAGCGTTCGTACTG 58.233 50.000 13.90 0.00 39.86 2.74
3673 3804 3.844577 ATAGTGAACAGCGTTCGTACT 57.155 42.857 13.90 14.04 0.00 2.73
3674 3805 5.327091 TCTAATAGTGAACAGCGTTCGTAC 58.673 41.667 13.90 9.17 0.00 3.67
3675 3806 5.550232 TCTAATAGTGAACAGCGTTCGTA 57.450 39.130 13.90 9.76 0.00 3.43
3676 3807 4.430137 TCTAATAGTGAACAGCGTTCGT 57.570 40.909 13.90 8.34 0.00 3.85
3677 3808 5.220228 CCTTTCTAATAGTGAACAGCGTTCG 60.220 44.000 13.90 0.00 0.00 3.95
3678 3809 5.446073 GCCTTTCTAATAGTGAACAGCGTTC 60.446 44.000 12.53 12.53 0.00 3.95
3679 3810 4.392138 GCCTTTCTAATAGTGAACAGCGTT 59.608 41.667 0.00 0.00 0.00 4.84
3680 3811 3.933332 GCCTTTCTAATAGTGAACAGCGT 59.067 43.478 0.00 0.00 0.00 5.07
3681 3812 3.932710 TGCCTTTCTAATAGTGAACAGCG 59.067 43.478 0.00 0.00 0.00 5.18
3682 3813 4.333926 CCTGCCTTTCTAATAGTGAACAGC 59.666 45.833 0.00 0.00 0.00 4.40
3683 3814 5.734720 TCCTGCCTTTCTAATAGTGAACAG 58.265 41.667 0.00 0.00 0.00 3.16
3684 3815 5.755409 TCCTGCCTTTCTAATAGTGAACA 57.245 39.130 0.00 0.00 0.00 3.18
3685 3816 7.631717 AAATCCTGCCTTTCTAATAGTGAAC 57.368 36.000 0.00 0.00 0.00 3.18
3686 3817 8.650143 AAAAATCCTGCCTTTCTAATAGTGAA 57.350 30.769 0.00 0.00 0.00 3.18
3710 3841 8.576442 GGTGAGATCTACAGAAAAATGGAAAAA 58.424 33.333 0.00 0.00 0.00 1.94
3711 3842 7.723616 TGGTGAGATCTACAGAAAAATGGAAAA 59.276 33.333 0.00 0.00 0.00 2.29
3712 3843 7.230747 TGGTGAGATCTACAGAAAAATGGAAA 58.769 34.615 0.00 0.00 0.00 3.13
3713 3844 6.778821 TGGTGAGATCTACAGAAAAATGGAA 58.221 36.000 0.00 0.00 0.00 3.53
3714 3845 6.373005 TGGTGAGATCTACAGAAAAATGGA 57.627 37.500 0.00 0.00 0.00 3.41
3715 3846 8.737168 TTATGGTGAGATCTACAGAAAAATGG 57.263 34.615 0.00 0.00 0.00 3.16
3717 3848 9.911788 ACATTATGGTGAGATCTACAGAAAAAT 57.088 29.630 0.00 0.00 0.00 1.82
3723 3854 9.987272 TGAAATACATTATGGTGAGATCTACAG 57.013 33.333 0.00 0.00 0.00 2.74
3727 3858 8.790718 GCAATGAAATACATTATGGTGAGATCT 58.209 33.333 0.00 0.00 46.01 2.75
3728 3859 8.025445 GGCAATGAAATACATTATGGTGAGATC 58.975 37.037 0.00 0.00 46.01 2.75
3729 3860 7.506599 TGGCAATGAAATACATTATGGTGAGAT 59.493 33.333 0.00 0.00 46.01 2.75
3730 3861 6.832900 TGGCAATGAAATACATTATGGTGAGA 59.167 34.615 0.00 0.00 46.01 3.27
3731 3862 7.013559 TCTGGCAATGAAATACATTATGGTGAG 59.986 37.037 0.00 0.00 46.01 3.51
3732 3863 6.832900 TCTGGCAATGAAATACATTATGGTGA 59.167 34.615 0.00 0.00 46.01 4.02
3733 3864 6.919662 GTCTGGCAATGAAATACATTATGGTG 59.080 38.462 0.00 0.00 46.01 4.17
3734 3865 6.835488 AGTCTGGCAATGAAATACATTATGGT 59.165 34.615 0.00 0.00 46.01 3.55
3735 3866 7.281040 AGTCTGGCAATGAAATACATTATGG 57.719 36.000 0.00 0.00 46.01 2.74
3740 3871 9.407380 TGTATAAAGTCTGGCAATGAAATACAT 57.593 29.630 0.00 0.00 41.45 2.29
3741 3872 8.673711 GTGTATAAAGTCTGGCAATGAAATACA 58.326 33.333 0.00 0.00 0.00 2.29
3742 3873 8.673711 TGTGTATAAAGTCTGGCAATGAAATAC 58.326 33.333 0.00 0.00 0.00 1.89
3743 3874 8.800370 TGTGTATAAAGTCTGGCAATGAAATA 57.200 30.769 0.00 0.00 0.00 1.40
3744 3875 7.701539 TGTGTATAAAGTCTGGCAATGAAAT 57.298 32.000 0.00 0.00 0.00 2.17
3745 3876 7.176515 ACATGTGTATAAAGTCTGGCAATGAAA 59.823 33.333 0.00 0.00 0.00 2.69
3746 3877 6.658816 ACATGTGTATAAAGTCTGGCAATGAA 59.341 34.615 0.00 0.00 0.00 2.57
3747 3878 6.179756 ACATGTGTATAAAGTCTGGCAATGA 58.820 36.000 0.00 0.00 0.00 2.57
3748 3879 6.441093 ACATGTGTATAAAGTCTGGCAATG 57.559 37.500 0.00 0.00 0.00 2.82
3749 3880 7.564793 TCTACATGTGTATAAAGTCTGGCAAT 58.435 34.615 9.11 0.00 0.00 3.56
3750 3881 6.941857 TCTACATGTGTATAAAGTCTGGCAA 58.058 36.000 9.11 0.00 0.00 4.52
3751 3882 6.538945 TCTACATGTGTATAAAGTCTGGCA 57.461 37.500 9.11 0.00 0.00 4.92
3752 3883 8.979574 GTATTCTACATGTGTATAAAGTCTGGC 58.020 37.037 9.11 0.00 0.00 4.85
3935 4067 5.780793 GGACAGAGGGAGTATTATATGTGGT 59.219 44.000 0.00 0.00 0.00 4.16
3960 4092 9.934190 TTAACTAAAACCACGACACTTATTTTC 57.066 29.630 0.00 0.00 0.00 2.29
4128 4273 3.909732 TGGACCATCCAAACAGAAGTTT 58.090 40.909 0.00 0.00 45.00 2.66
4129 4274 3.593442 TGGACCATCCAAACAGAAGTT 57.407 42.857 0.00 0.00 45.00 2.66
4140 4285 6.484364 AAAAATTATGGACATGGACCATCC 57.516 37.500 23.43 5.51 45.46 3.51
4163 4308 9.927668 GGAGAATCATTTCATAAACCAAGAAAA 57.072 29.630 0.00 0.00 36.25 2.29
4164 4309 9.087871 TGGAGAATCATTTCATAAACCAAGAAA 57.912 29.630 0.00 0.00 36.25 2.52
4165 4310 8.648698 TGGAGAATCATTTCATAAACCAAGAA 57.351 30.769 0.00 0.00 36.25 2.52
4166 4311 8.827832 ATGGAGAATCATTTCATAAACCAAGA 57.172 30.769 0.00 0.00 36.25 3.02
4167 4312 9.880157 AAATGGAGAATCATTTCATAAACCAAG 57.120 29.630 0.00 0.00 41.82 3.61
4169 4314 9.656040 CAAAATGGAGAATCATTTCATAAACCA 57.344 29.630 3.71 0.00 43.93 3.67
4170 4315 9.657419 ACAAAATGGAGAATCATTTCATAAACC 57.343 29.630 3.71 0.00 43.93 3.27
4176 4321 9.519191 TCTCTTACAAAATGGAGAATCATTTCA 57.481 29.630 3.71 0.00 43.93 2.69
4184 4329 9.561069 GCCTATATTCTCTTACAAAATGGAGAA 57.439 33.333 6.69 6.69 45.04 2.87
4185 4330 8.713971 TGCCTATATTCTCTTACAAAATGGAGA 58.286 33.333 0.00 0.00 33.69 3.71
4186 4331 8.908786 TGCCTATATTCTCTTACAAAATGGAG 57.091 34.615 0.00 0.00 0.00 3.86
4187 4332 9.693739 TTTGCCTATATTCTCTTACAAAATGGA 57.306 29.630 0.00 0.00 0.00 3.41
4284 4429 5.467063 GCAACTACCTTGATATACCAAGAGC 59.533 44.000 8.55 0.00 44.66 4.09
4297 4445 3.252215 TCAACCAAATCGCAACTACCTTG 59.748 43.478 0.00 0.00 0.00 3.61
4360 4508 8.883731 TGCTATGCTCTAACTGAAAATAGAAAC 58.116 33.333 0.00 0.00 0.00 2.78
4581 4730 5.592688 CCAGTTTCTAGGTTTTTCTCCAACA 59.407 40.000 0.00 0.00 0.00 3.33
4627 4776 5.178623 TGACATGTTCAATCACCGTACTTTC 59.821 40.000 0.00 0.00 0.00 2.62
4846 4995 4.395231 GTGTAGATGACCCTAAACCAAAGC 59.605 45.833 0.00 0.00 0.00 3.51
5020 5176 6.806739 GCAAAAATCCAGTTGTACTATCCAAC 59.193 38.462 0.00 0.00 41.94 3.77
5130 5287 7.644945 TCAAATGATCTGTTATATTTGCTTGCG 59.355 33.333 8.38 0.00 39.27 4.85
5149 5306 5.620206 TCTCTGGTTTAAGCACTCAAATGA 58.380 37.500 0.00 0.00 0.00 2.57
5153 5310 4.955811 TCTCTCTGGTTTAAGCACTCAA 57.044 40.909 0.00 0.00 0.00 3.02
5500 5663 5.848406 ACTTGAACATCTATAGCTAGCCAC 58.152 41.667 12.13 0.00 0.00 5.01
5513 5676 6.732531 TGATGACAGATCAACTTGAACATC 57.267 37.500 0.00 0.00 38.69 3.06
5515 5678 7.514784 AAATGATGACAGATCAACTTGAACA 57.485 32.000 0.00 0.00 38.69 3.18
5516 5679 7.965107 GGTAAATGATGACAGATCAACTTGAAC 59.035 37.037 0.00 0.00 38.69 3.18
5517 5680 7.665145 TGGTAAATGATGACAGATCAACTTGAA 59.335 33.333 0.00 0.00 38.69 2.69
5518 5681 7.167535 TGGTAAATGATGACAGATCAACTTGA 58.832 34.615 0.00 0.00 38.69 3.02
5520 5683 8.585471 ATTGGTAAATGATGACAGATCAACTT 57.415 30.769 0.00 0.00 38.69 2.66
5587 5824 6.241645 AGCTTTTCCCTTCATATAGGCATAC 58.758 40.000 0.00 0.00 33.73 2.39
5666 5903 9.083422 TCAAACCAATAAATCAACATTCTACCA 57.917 29.630 0.00 0.00 0.00 3.25
5677 5914 7.507616 ACAAGGGTACTTCAAACCAATAAATCA 59.492 33.333 0.00 0.00 38.87 2.57
5687 5924 5.850614 TCTACAGACAAGGGTACTTCAAAC 58.149 41.667 0.00 0.00 33.81 2.93
5809 6046 8.665685 TGACTAAAGAAAGTTGAGTTTCAAGTC 58.334 33.333 20.47 20.47 38.97 3.01
5844 6081 3.668656 GGACTGCGCTGAAAAATAACAAC 59.331 43.478 21.92 0.00 0.00 3.32
5859 6096 3.459232 TTAGGATTCAGATGGACTGCG 57.541 47.619 0.00 0.00 45.38 5.18
6015 6252 4.409901 TCATCATTATCCTGTGAGCTTCCA 59.590 41.667 0.00 0.00 0.00 3.53
6119 6364 2.464796 TCAGGGCGGAAGGAGTATAA 57.535 50.000 0.00 0.00 0.00 0.98
6136 6381 5.772825 AGCTTGCAAAAAGTCTTACATCA 57.227 34.783 0.00 0.00 0.00 3.07
6184 6432 4.684484 ACTATTCCCTCCGTTCCATAAC 57.316 45.455 0.00 0.00 0.00 1.89
6201 6449 7.778185 ACCAAGTCACTAAGTACAGAACTAT 57.222 36.000 0.00 0.00 37.50 2.12
6231 6479 1.399714 TCTATACCGCTGTCCACTGG 58.600 55.000 0.00 0.00 0.00 4.00
6254 6502 1.202915 TCAACCAGGAAGCTGCAATCA 60.203 47.619 1.02 0.00 0.00 2.57
6287 6535 3.244156 CAGCTCAGCTCATACGATCATC 58.756 50.000 0.00 0.00 36.40 2.92
6415 6664 6.778834 TGAATTGTAACGTCTAGGGTCATA 57.221 37.500 0.00 0.00 0.00 2.15
6418 6667 7.384387 GGAATATGAATTGTAACGTCTAGGGTC 59.616 40.741 0.00 0.00 0.00 4.46
6541 6790 7.827729 AGTGTTAAACTGCTTATAGGGGTTAAG 59.172 37.037 0.00 0.00 37.88 1.85
6553 6802 8.677300 CATATGTGGATTAGTGTTAAACTGCTT 58.323 33.333 0.00 0.00 40.26 3.91
6624 6874 1.004745 CAGGGGTGCCAACTAATCAGT 59.995 52.381 0.00 0.00 36.19 3.41
6632 6882 0.755327 AACTTCACAGGGGTGCCAAC 60.755 55.000 0.00 0.00 44.87 3.77
6771 7075 7.718753 TGCAAAATTTTATGAACCAACCAGAAT 59.281 29.630 2.44 0.00 0.00 2.40
6772 7076 7.050377 TGCAAAATTTTATGAACCAACCAGAA 58.950 30.769 2.44 0.00 0.00 3.02
6773 7077 6.586344 TGCAAAATTTTATGAACCAACCAGA 58.414 32.000 2.44 0.00 0.00 3.86
6774 7078 6.857777 TGCAAAATTTTATGAACCAACCAG 57.142 33.333 2.44 0.00 0.00 4.00
6775 7079 7.630242 TTTGCAAAATTTTATGAACCAACCA 57.370 28.000 10.02 0.00 0.00 3.67
6776 7080 8.802856 GTTTTTGCAAAATTTTATGAACCAACC 58.197 29.630 24.39 0.00 0.00 3.77
6777 7081 9.566530 AGTTTTTGCAAAATTTTATGAACCAAC 57.433 25.926 24.39 14.34 0.00 3.77
6790 7354 4.583871 TGGACCACAAGTTTTTGCAAAAT 58.416 34.783 24.39 8.79 37.85 1.82
6798 7362 6.110033 GGTTTAACAATGGACCACAAGTTTT 58.890 36.000 11.82 0.00 34.53 2.43
6810 7376 6.993786 AAACTTTGGTTGGTTTAACAATGG 57.006 33.333 0.00 0.00 41.18 3.16
6844 7410 5.417894 GGATACAAAAAGAACGGAGGGAATT 59.582 40.000 0.00 0.00 0.00 2.17
6950 7516 2.423577 GGCAACTGTCGTTACTTCCAT 58.576 47.619 0.00 0.00 0.00 3.41
6961 7527 2.654912 CGAACGGACGGCAACTGTC 61.655 63.158 0.00 0.00 38.72 3.51
7029 7595 2.159057 GGATTATTGCAGCCCAGGTTTG 60.159 50.000 0.00 0.00 0.00 2.93
7111 7677 2.299521 CACCAACAGTTAAAACGGGGA 58.700 47.619 0.00 0.00 0.00 4.81
7142 7708 8.088981 CAGGTAGCTCTAAAAGTTTAGTCAAGA 58.911 37.037 9.95 0.00 40.69 3.02
7569 8135 2.481622 CCAGCTGTAGATGCTCTGACAG 60.482 54.545 13.81 0.00 41.82 3.51
7570 8136 1.479730 CCAGCTGTAGATGCTCTGACA 59.520 52.381 13.81 0.00 38.92 3.58
7571 8137 1.753649 TCCAGCTGTAGATGCTCTGAC 59.246 52.381 13.81 0.00 38.92 3.51
7572 8138 1.753649 GTCCAGCTGTAGATGCTCTGA 59.246 52.381 13.81 0.00 38.92 3.27
7573 8139 1.755959 AGTCCAGCTGTAGATGCTCTG 59.244 52.381 13.81 0.00 38.92 3.35
7574 8140 2.157640 AGTCCAGCTGTAGATGCTCT 57.842 50.000 13.81 0.00 38.92 4.09
7575 8141 2.977772 AAGTCCAGCTGTAGATGCTC 57.022 50.000 13.81 0.00 38.92 4.26
7576 8142 2.102252 GCTAAGTCCAGCTGTAGATGCT 59.898 50.000 13.81 0.00 42.06 3.79
7577 8143 2.159043 TGCTAAGTCCAGCTGTAGATGC 60.159 50.000 13.81 10.02 42.30 3.91
7578 8144 3.808466 TGCTAAGTCCAGCTGTAGATG 57.192 47.619 13.81 0.00 42.30 2.90
7579 8145 4.826274 TTTGCTAAGTCCAGCTGTAGAT 57.174 40.909 13.81 0.00 42.30 1.98
7580 8146 4.222810 TGATTTGCTAAGTCCAGCTGTAGA 59.777 41.667 13.81 0.01 42.30 2.59
7581 8147 4.507710 TGATTTGCTAAGTCCAGCTGTAG 58.492 43.478 13.81 8.77 42.30 2.74
7582 8148 4.507710 CTGATTTGCTAAGTCCAGCTGTA 58.492 43.478 13.81 0.00 42.30 2.74
7583 8149 3.341823 CTGATTTGCTAAGTCCAGCTGT 58.658 45.455 13.81 0.00 42.30 4.40
7584 8150 2.097142 GCTGATTTGCTAAGTCCAGCTG 59.903 50.000 6.78 6.78 42.46 4.24
7585 8151 2.363683 GCTGATTTGCTAAGTCCAGCT 58.636 47.619 18.12 0.00 42.46 4.24
7586 8152 1.403323 GGCTGATTTGCTAAGTCCAGC 59.597 52.381 17.56 17.56 44.31 4.85
7587 8153 2.019984 GGGCTGATTTGCTAAGTCCAG 58.980 52.381 0.00 0.00 35.68 3.86
7588 8154 1.340991 GGGGCTGATTTGCTAAGTCCA 60.341 52.381 0.00 0.00 37.44 4.02
7589 8155 1.393603 GGGGCTGATTTGCTAAGTCC 58.606 55.000 0.00 0.00 34.82 3.85
7590 8156 1.393603 GGGGGCTGATTTGCTAAGTC 58.606 55.000 0.00 0.00 0.00 3.01
7591 8157 3.596362 GGGGGCTGATTTGCTAAGT 57.404 52.632 0.00 0.00 0.00 2.24
7606 8172 2.006805 ATCCACGGGCATTTAGGGGG 62.007 60.000 0.00 0.00 0.00 5.40
7607 8173 0.823356 CATCCACGGGCATTTAGGGG 60.823 60.000 0.00 0.00 0.00 4.79
7608 8174 0.106719 ACATCCACGGGCATTTAGGG 60.107 55.000 0.00 0.00 0.00 3.53
7609 8175 1.308998 GACATCCACGGGCATTTAGG 58.691 55.000 0.00 0.00 0.00 2.69
7610 8176 1.308998 GGACATCCACGGGCATTTAG 58.691 55.000 0.00 0.00 35.64 1.85
7611 8177 0.106918 GGGACATCCACGGGCATTTA 60.107 55.000 0.00 0.00 37.91 1.40
7612 8178 1.379843 GGGACATCCACGGGCATTT 60.380 57.895 0.00 0.00 37.91 2.32
7613 8179 2.275418 GGGACATCCACGGGCATT 59.725 61.111 0.00 0.00 37.91 3.56
7614 8180 3.809013 GGGGACATCCACGGGCAT 61.809 66.667 0.00 0.00 37.91 4.40
7620 8186 2.291043 ACTGACCGGGGACATCCAC 61.291 63.158 6.32 0.00 37.91 4.02
7621 8187 2.121832 ACTGACCGGGGACATCCA 59.878 61.111 6.32 0.00 37.91 3.41
7622 8188 2.240162 GACACTGACCGGGGACATCC 62.240 65.000 6.32 0.00 0.00 3.51
7623 8189 1.218316 GACACTGACCGGGGACATC 59.782 63.158 6.32 0.00 0.00 3.06
7624 8190 2.291043 GGACACTGACCGGGGACAT 61.291 63.158 6.32 0.00 0.00 3.06
7625 8191 2.920912 GGACACTGACCGGGGACA 60.921 66.667 6.32 1.85 0.00 4.02
7626 8192 2.291043 ATGGACACTGACCGGGGAC 61.291 63.158 6.32 0.00 0.00 4.46
7627 8193 2.121832 ATGGACACTGACCGGGGA 59.878 61.111 6.32 0.00 0.00 4.81
7628 8194 2.268920 CATGGACACTGACCGGGG 59.731 66.667 6.32 0.00 0.00 5.73
7629 8195 2.436646 GCATGGACACTGACCGGG 60.437 66.667 6.32 0.00 0.00 5.73
7630 8196 2.815211 CGCATGGACACTGACCGG 60.815 66.667 0.00 0.00 0.00 5.28
7631 8197 2.048222 ACGCATGGACACTGACCG 60.048 61.111 0.00 0.00 0.00 4.79
7632 8198 2.680913 GCACGCATGGACACTGACC 61.681 63.158 0.00 0.00 0.00 4.02
7633 8199 1.300971 ATGCACGCATGGACACTGAC 61.301 55.000 3.17 0.00 35.03 3.51
7634 8200 1.003476 ATGCACGCATGGACACTGA 60.003 52.632 3.17 0.00 35.03 3.41
7635 8201 3.582148 ATGCACGCATGGACACTG 58.418 55.556 3.17 0.00 35.03 3.66
7643 8209 3.059884 GTGTATAGCTACATGCACGCAT 58.940 45.455 0.00 0.00 45.94 4.73
7644 8210 2.100749 AGTGTATAGCTACATGCACGCA 59.899 45.455 10.79 0.00 43.72 5.24
7645 8211 2.743938 AGTGTATAGCTACATGCACGC 58.256 47.619 10.79 4.95 43.72 5.34
7646 8212 4.359706 TGAAGTGTATAGCTACATGCACG 58.640 43.478 10.79 0.00 43.72 5.34
7647 8213 6.851222 AATGAAGTGTATAGCTACATGCAC 57.149 37.500 9.06 9.06 45.94 4.57
7648 8214 7.770433 AGAAAATGAAGTGTATAGCTACATGCA 59.230 33.333 0.00 0.00 45.94 3.96
7649 8215 8.147642 AGAAAATGAAGTGTATAGCTACATGC 57.852 34.615 0.00 0.00 39.93 4.06
7650 8216 8.768955 GGAGAAAATGAAGTGTATAGCTACATG 58.231 37.037 0.00 0.00 39.93 3.21
7651 8217 7.934120 GGGAGAAAATGAAGTGTATAGCTACAT 59.066 37.037 0.00 0.00 39.93 2.29
7652 8218 7.125811 AGGGAGAAAATGAAGTGTATAGCTACA 59.874 37.037 0.00 0.00 35.48 2.74
7653 8219 7.439655 CAGGGAGAAAATGAAGTGTATAGCTAC 59.560 40.741 0.00 0.00 0.00 3.58
7654 8220 7.419057 CCAGGGAGAAAATGAAGTGTATAGCTA 60.419 40.741 0.00 0.00 0.00 3.32
7655 8221 6.352516 CAGGGAGAAAATGAAGTGTATAGCT 58.647 40.000 0.00 0.00 0.00 3.32
7656 8222 5.529060 CCAGGGAGAAAATGAAGTGTATAGC 59.471 44.000 0.00 0.00 0.00 2.97
7657 8223 6.653989 ACCAGGGAGAAAATGAAGTGTATAG 58.346 40.000 0.00 0.00 0.00 1.31
7658 8224 6.636454 ACCAGGGAGAAAATGAAGTGTATA 57.364 37.500 0.00 0.00 0.00 1.47
7659 8225 5.520748 ACCAGGGAGAAAATGAAGTGTAT 57.479 39.130 0.00 0.00 0.00 2.29
7660 8226 4.993705 ACCAGGGAGAAAATGAAGTGTA 57.006 40.909 0.00 0.00 0.00 2.90
7661 8227 3.884037 ACCAGGGAGAAAATGAAGTGT 57.116 42.857 0.00 0.00 0.00 3.55
7662 8228 7.056635 ACATATACCAGGGAGAAAATGAAGTG 58.943 38.462 0.00 0.00 0.00 3.16
7663 8229 7.213178 ACATATACCAGGGAGAAAATGAAGT 57.787 36.000 0.00 0.00 0.00 3.01
7664 8230 6.712547 GGACATATACCAGGGAGAAAATGAAG 59.287 42.308 0.00 0.00 0.00 3.02
7665 8231 6.159575 TGGACATATACCAGGGAGAAAATGAA 59.840 38.462 0.00 0.00 33.22 2.57
7666 8232 5.669904 TGGACATATACCAGGGAGAAAATGA 59.330 40.000 0.00 0.00 33.22 2.57
7667 8233 5.940617 TGGACATATACCAGGGAGAAAATG 58.059 41.667 0.00 0.00 33.22 2.32
7668 8234 6.240292 GGATGGACATATACCAGGGAGAAAAT 60.240 42.308 6.88 0.00 40.89 1.82
7669 8235 5.073144 GGATGGACATATACCAGGGAGAAAA 59.927 44.000 6.88 0.00 40.89 2.29
7670 8236 4.597507 GGATGGACATATACCAGGGAGAAA 59.402 45.833 6.88 0.00 40.89 2.52
7671 8237 4.168101 GGATGGACATATACCAGGGAGAA 58.832 47.826 6.88 0.00 40.89 2.87
7672 8238 3.143933 TGGATGGACATATACCAGGGAGA 59.856 47.826 6.88 0.00 40.89 3.71
7673 8239 3.520696 TGGATGGACATATACCAGGGAG 58.479 50.000 6.88 0.00 40.89 4.30
7674 8240 3.646867 TGGATGGACATATACCAGGGA 57.353 47.619 6.88 0.00 40.89 4.20
7675 8241 3.845992 TCATGGATGGACATATACCAGGG 59.154 47.826 0.00 0.00 40.89 4.45
7676 8242 4.779489 TCTCATGGATGGACATATACCAGG 59.221 45.833 6.88 0.00 40.89 4.45
7677 8243 6.556974 ATCTCATGGATGGACATATACCAG 57.443 41.667 6.88 0.00 40.89 4.00
7678 8244 6.501453 TCAATCTCATGGATGGACATATACCA 59.499 38.462 0.00 3.75 41.83 3.25
7679 8245 6.950842 TCAATCTCATGGATGGACATATACC 58.049 40.000 0.00 0.00 34.45 2.73
7680 8246 8.434733 CATCAATCTCATGGATGGACATATAC 57.565 38.462 4.05 0.00 37.22 1.47
7689 8255 3.444034 GCATCCCATCAATCTCATGGATG 59.556 47.826 11.09 11.09 43.32 3.51
7690 8256 3.075432 TGCATCCCATCAATCTCATGGAT 59.925 43.478 0.00 0.00 43.32 3.41
7691 8257 2.444010 TGCATCCCATCAATCTCATGGA 59.556 45.455 0.00 0.00 43.32 3.41
7692 8258 2.820197 CTGCATCCCATCAATCTCATGG 59.180 50.000 0.00 0.00 40.67 3.66
7693 8259 3.751518 TCTGCATCCCATCAATCTCATG 58.248 45.455 0.00 0.00 0.00 3.07
7694 8260 3.651423 TCTCTGCATCCCATCAATCTCAT 59.349 43.478 0.00 0.00 0.00 2.90
7695 8261 3.043418 TCTCTGCATCCCATCAATCTCA 58.957 45.455 0.00 0.00 0.00 3.27
7696 8262 3.324268 TCTCTCTGCATCCCATCAATCTC 59.676 47.826 0.00 0.00 0.00 2.75
7697 8263 3.315596 TCTCTCTGCATCCCATCAATCT 58.684 45.455 0.00 0.00 0.00 2.40
7698 8264 3.324268 TCTCTCTCTGCATCCCATCAATC 59.676 47.826 0.00 0.00 0.00 2.67
7699 8265 3.315596 TCTCTCTCTGCATCCCATCAAT 58.684 45.455 0.00 0.00 0.00 2.57
7700 8266 2.755686 TCTCTCTCTGCATCCCATCAA 58.244 47.619 0.00 0.00 0.00 2.57
7701 8267 2.466547 TCTCTCTCTGCATCCCATCA 57.533 50.000 0.00 0.00 0.00 3.07
7702 8268 3.387374 TCTTTCTCTCTCTGCATCCCATC 59.613 47.826 0.00 0.00 0.00 3.51
7703 8269 3.382278 TCTTTCTCTCTCTGCATCCCAT 58.618 45.455 0.00 0.00 0.00 4.00
7704 8270 2.825223 TCTTTCTCTCTCTGCATCCCA 58.175 47.619 0.00 0.00 0.00 4.37
7705 8271 3.902881 TTCTTTCTCTCTCTGCATCCC 57.097 47.619 0.00 0.00 0.00 3.85
7728 8294 7.855784 AAGAATGTAATCAAGGGGAGTTTTT 57.144 32.000 0.00 0.00 0.00 1.94
7729 8295 7.855784 AAAGAATGTAATCAAGGGGAGTTTT 57.144 32.000 0.00 0.00 0.00 2.43
7730 8296 7.855784 AAAAGAATGTAATCAAGGGGAGTTT 57.144 32.000 0.00 0.00 0.00 2.66
7731 8297 8.950007 TTAAAAGAATGTAATCAAGGGGAGTT 57.050 30.769 0.00 0.00 0.00 3.01
7732 8298 8.971073 CATTAAAAGAATGTAATCAAGGGGAGT 58.029 33.333 0.00 0.00 0.00 3.85
7733 8299 7.922811 GCATTAAAAGAATGTAATCAAGGGGAG 59.077 37.037 0.00 0.00 0.00 4.30
7734 8300 7.398618 TGCATTAAAAGAATGTAATCAAGGGGA 59.601 33.333 0.00 0.00 0.00 4.81
7735 8301 7.555087 TGCATTAAAAGAATGTAATCAAGGGG 58.445 34.615 0.00 0.00 0.00 4.79
7736 8302 9.434420 TTTGCATTAAAAGAATGTAATCAAGGG 57.566 29.630 2.36 0.00 0.00 3.95
7739 8305 9.434420 CCCTTTGCATTAAAAGAATGTAATCAA 57.566 29.630 0.00 0.00 39.12 2.57
7740 8306 8.592809 ACCCTTTGCATTAAAAGAATGTAATCA 58.407 29.630 0.00 0.00 39.12 2.57
7741 8307 9.435688 AACCCTTTGCATTAAAAGAATGTAATC 57.564 29.630 0.00 0.00 39.12 1.75
7742 8308 9.218440 CAACCCTTTGCATTAAAAGAATGTAAT 57.782 29.630 0.00 0.00 39.12 1.89
7743 8309 7.659390 CCAACCCTTTGCATTAAAAGAATGTAA 59.341 33.333 0.00 0.00 39.12 2.41
7744 8310 7.015682 TCCAACCCTTTGCATTAAAAGAATGTA 59.984 33.333 0.00 0.00 39.12 2.29
7745 8311 5.997129 CCAACCCTTTGCATTAAAAGAATGT 59.003 36.000 0.00 0.00 39.12 2.71
7746 8312 6.229733 TCCAACCCTTTGCATTAAAAGAATG 58.770 36.000 0.00 0.00 39.12 2.67
7747 8313 6.432403 TCCAACCCTTTGCATTAAAAGAAT 57.568 33.333 0.00 0.00 39.12 2.40
7748 8314 5.878406 TCCAACCCTTTGCATTAAAAGAA 57.122 34.783 0.00 0.00 39.12 2.52
7749 8315 6.432403 AATCCAACCCTTTGCATTAAAAGA 57.568 33.333 0.00 0.00 39.12 2.52
7750 8316 8.791327 AATAATCCAACCCTTTGCATTAAAAG 57.209 30.769 0.00 0.00 30.68 2.27
7752 8318 9.660180 GTAAATAATCCAACCCTTTGCATTAAA 57.340 29.630 0.00 0.00 30.68 1.52
7753 8319 9.041354 AGTAAATAATCCAACCCTTTGCATTAA 57.959 29.630 0.00 0.00 30.68 1.40
7754 8320 8.602472 AGTAAATAATCCAACCCTTTGCATTA 57.398 30.769 0.00 0.00 31.30 1.90
7755 8321 7.364673 GGAGTAAATAATCCAACCCTTTGCATT 60.365 37.037 2.20 0.00 40.05 3.56
7756 8322 6.098266 GGAGTAAATAATCCAACCCTTTGCAT 59.902 38.462 2.20 0.00 40.05 3.96
7757 8323 5.420739 GGAGTAAATAATCCAACCCTTTGCA 59.579 40.000 2.20 0.00 40.05 4.08
7758 8324 5.420739 TGGAGTAAATAATCCAACCCTTTGC 59.579 40.000 7.13 0.00 46.22 3.68
7800 8366 9.863845 GGGAGTATAAGAGTATTCTAAATGCTC 57.136 37.037 14.54 14.54 37.62 4.26
7801 8367 9.608718 AGGGAGTATAAGAGTATTCTAAATGCT 57.391 33.333 0.00 0.00 31.96 3.79
7802 8368 9.863845 GAGGGAGTATAAGAGTATTCTAAATGC 57.136 37.037 0.00 0.00 31.96 3.56
7812 8378 9.986157 TTTCTTTACAGAGGGAGTATAAGAGTA 57.014 33.333 0.00 0.00 0.00 2.59
7813 8379 8.896722 TTTCTTTACAGAGGGAGTATAAGAGT 57.103 34.615 0.00 0.00 0.00 3.24
7821 8387 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
7822 8388 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
7823 8389 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
7824 8390 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
7874 8440 9.774413 CCCTCCGTAAATAAATATAAGAGTGTT 57.226 33.333 0.00 0.00 0.00 3.32
7875 8441 9.151177 TCCCTCCGTAAATAAATATAAGAGTGT 57.849 33.333 0.00 0.00 0.00 3.55
7876 8442 9.640963 CTCCCTCCGTAAATAAATATAAGAGTG 57.359 37.037 0.00 0.00 0.00 3.51
7877 8443 9.377238 ACTCCCTCCGTAAATAAATATAAGAGT 57.623 33.333 0.00 0.00 0.00 3.24
7886 8452 9.991906 CAATCTAATACTCCCTCCGTAAATAAA 57.008 33.333 0.00 0.00 0.00 1.40
7887 8453 8.092687 GCAATCTAATACTCCCTCCGTAAATAA 58.907 37.037 0.00 0.00 0.00 1.40
7888 8454 7.453752 AGCAATCTAATACTCCCTCCGTAAATA 59.546 37.037 0.00 0.00 0.00 1.40
7889 8455 6.270231 AGCAATCTAATACTCCCTCCGTAAAT 59.730 38.462 0.00 0.00 0.00 1.40
7890 8456 5.601313 AGCAATCTAATACTCCCTCCGTAAA 59.399 40.000 0.00 0.00 0.00 2.01
7891 8457 5.145564 AGCAATCTAATACTCCCTCCGTAA 58.854 41.667 0.00 0.00 0.00 3.18
7892 8458 4.737578 AGCAATCTAATACTCCCTCCGTA 58.262 43.478 0.00 0.00 0.00 4.02
7893 8459 3.577919 AGCAATCTAATACTCCCTCCGT 58.422 45.455 0.00 0.00 0.00 4.69
7894 8460 5.394663 CCATAGCAATCTAATACTCCCTCCG 60.395 48.000 0.00 0.00 0.00 4.63
7895 8461 5.485708 ACCATAGCAATCTAATACTCCCTCC 59.514 44.000 0.00 0.00 0.00 4.30
7896 8462 6.613153 ACCATAGCAATCTAATACTCCCTC 57.387 41.667 0.00 0.00 0.00 4.30
7897 8463 7.016914 TGTACCATAGCAATCTAATACTCCCT 58.983 38.462 0.00 0.00 0.00 4.20
7898 8464 7.241042 TGTACCATAGCAATCTAATACTCCC 57.759 40.000 0.00 0.00 0.00 4.30
7907 8473 9.881649 CTGTCATATTATGTACCATAGCAATCT 57.118 33.333 3.67 0.00 0.00 2.40
7908 8474 8.607459 GCTGTCATATTATGTACCATAGCAATC 58.393 37.037 3.67 0.00 0.00 2.67
7909 8475 7.554118 GGCTGTCATATTATGTACCATAGCAAT 59.446 37.037 11.37 0.00 0.00 3.56
7910 8476 6.878923 GGCTGTCATATTATGTACCATAGCAA 59.121 38.462 11.37 0.00 0.00 3.91
7911 8477 6.406370 GGCTGTCATATTATGTACCATAGCA 58.594 40.000 11.37 0.00 0.00 3.49
7912 8478 5.520288 CGGCTGTCATATTATGTACCATAGC 59.480 44.000 3.67 4.05 0.00 2.97
7913 8479 5.520288 GCGGCTGTCATATTATGTACCATAG 59.480 44.000 3.67 0.00 0.00 2.23
7914 8480 5.416083 GCGGCTGTCATATTATGTACCATA 58.584 41.667 3.67 0.00 0.00 2.74
7915 8481 4.253685 GCGGCTGTCATATTATGTACCAT 58.746 43.478 3.67 0.00 0.00 3.55
7916 8482 3.659786 GCGGCTGTCATATTATGTACCA 58.340 45.455 3.67 0.02 0.00 3.25
7917 8483 2.666508 CGCGGCTGTCATATTATGTACC 59.333 50.000 0.00 1.59 0.00 3.34
7918 8484 3.314553 ACGCGGCTGTCATATTATGTAC 58.685 45.455 12.47 2.45 0.00 2.90
7919 8485 3.571571 GACGCGGCTGTCATATTATGTA 58.428 45.455 12.47 0.00 38.75 2.29
7920 8486 2.404215 GACGCGGCTGTCATATTATGT 58.596 47.619 12.47 0.00 38.75 2.29
7921 8487 1.386748 CGACGCGGCTGTCATATTATG 59.613 52.381 11.76 0.00 38.84 1.90
7922 8488 1.698165 CGACGCGGCTGTCATATTAT 58.302 50.000 11.76 0.00 38.84 1.28
7923 8489 0.937699 GCGACGCGGCTGTCATATTA 60.938 55.000 11.76 0.00 38.84 0.98
7924 8490 2.237751 GCGACGCGGCTGTCATATT 61.238 57.895 11.76 0.00 38.84 1.28
7925 8491 2.658593 GCGACGCGGCTGTCATAT 60.659 61.111 11.76 0.00 38.84 1.78
7926 8492 3.822192 AGCGACGCGGCTGTCATA 61.822 61.111 11.76 0.00 42.86 2.15
7935 8501 1.870268 GATATGTGAGCAGCGACGCG 61.870 60.000 15.18 3.53 36.85 6.01
7936 8502 0.871592 TGATATGTGAGCAGCGACGC 60.872 55.000 13.03 13.03 0.00 5.19
7937 8503 1.775869 ATGATATGTGAGCAGCGACG 58.224 50.000 0.00 0.00 0.00 5.12
7938 8504 3.906998 ACTATGATATGTGAGCAGCGAC 58.093 45.455 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.