Multiple sequence alignment - TraesCS6D01G292000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G292000 chr6D 100.000 4257 0 0 1 4257 402501682 402497426 0.000000e+00 7862
1 TraesCS6D01G292000 chr5B 92.060 2456 160 19 689 3128 115644518 115642082 0.000000e+00 3422
2 TraesCS6D01G292000 chr5B 93.669 853 41 11 2362 3210 588755763 588756606 0.000000e+00 1264
3 TraesCS6D01G292000 chr4A 89.108 2736 238 36 691 3414 598111654 598114341 0.000000e+00 3347
4 TraesCS6D01G292000 chr4A 95.816 478 17 3 2652 3128 149094261 149093786 0.000000e+00 769
5 TraesCS6D01G292000 chr2A 92.844 2152 133 14 691 2829 140631486 140633629 0.000000e+00 3101
6 TraesCS6D01G292000 chr1A 92.508 2149 149 7 692 2829 576538444 576540591 0.000000e+00 3066
7 TraesCS6D01G292000 chr1A 88.060 737 60 13 2703 3414 16420421 16419688 0.000000e+00 848
8 TraesCS6D01G292000 chr1A 87.364 736 63 10 2703 3414 308946724 308947453 0.000000e+00 817
9 TraesCS6D01G292000 chr1A 86.161 672 76 11 2747 3414 451284857 451284199 0.000000e+00 710
10 TraesCS6D01G292000 chr7D 92.854 2127 128 16 689 2794 213284465 213282342 0.000000e+00 3064
11 TraesCS6D01G292000 chr7D 88.873 683 50 7 2755 3417 400294378 400293702 0.000000e+00 817
12 TraesCS6D01G292000 chr3D 92.407 2081 148 9 689 2761 573052153 573054231 0.000000e+00 2959
13 TraesCS6D01G292000 chr3D 92.163 2080 152 10 689 2761 573041509 573043584 0.000000e+00 2928
14 TraesCS6D01G292000 chr3D 91.818 2090 149 12 689 2761 284991670 284993754 0.000000e+00 2892
15 TraesCS6D01G292000 chr7B 91.098 2168 150 14 688 2829 223702867 223705017 0.000000e+00 2894
16 TraesCS6D01G292000 chr7B 90.311 836 63 7 691 1515 697434121 697434949 0.000000e+00 1079
17 TraesCS6D01G292000 chr1D 91.591 2081 160 6 691 2756 93505512 93503432 0.000000e+00 2859
18 TraesCS6D01G292000 chr4D 90.054 734 48 7 2703 3414 468276016 468275286 0.000000e+00 928
19 TraesCS6D01G292000 chr6B 86.795 833 45 24 3419 4218 603363551 603362751 0.000000e+00 869
20 TraesCS6D01G292000 chr6A 85.731 869 44 25 3414 4257 549236635 549235822 0.000000e+00 845
21 TraesCS6D01G292000 chr6A 86.598 291 36 3 401 691 549236920 549236633 6.870000e-83 318
22 TraesCS6D01G292000 chr6A 86.705 173 14 4 116 288 549237541 549237378 2.610000e-42 183
23 TraesCS6D01G292000 chr5A 89.583 672 58 7 2749 3414 441506327 441506992 0.000000e+00 843
24 TraesCS6D01G292000 chr7A 87.772 736 58 12 2703 3416 512748917 512748192 0.000000e+00 832
25 TraesCS6D01G292000 chr7A 87.481 671 73 8 2749 3414 474507798 474508462 0.000000e+00 763
26 TraesCS6D01G292000 chr2D 93.651 504 25 7 2712 3210 127972973 127973474 0.000000e+00 747
27 TraesCS6D01G292000 chr2D 86.917 665 72 10 2755 3416 528546814 528546162 0.000000e+00 732


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G292000 chr6D 402497426 402501682 4256 True 7862.000000 7862 100.000000 1 4257 1 chr6D.!!$R1 4256
1 TraesCS6D01G292000 chr5B 115642082 115644518 2436 True 3422.000000 3422 92.060000 689 3128 1 chr5B.!!$R1 2439
2 TraesCS6D01G292000 chr5B 588755763 588756606 843 False 1264.000000 1264 93.669000 2362 3210 1 chr5B.!!$F1 848
3 TraesCS6D01G292000 chr4A 598111654 598114341 2687 False 3347.000000 3347 89.108000 691 3414 1 chr4A.!!$F1 2723
4 TraesCS6D01G292000 chr2A 140631486 140633629 2143 False 3101.000000 3101 92.844000 691 2829 1 chr2A.!!$F1 2138
5 TraesCS6D01G292000 chr1A 576538444 576540591 2147 False 3066.000000 3066 92.508000 692 2829 1 chr1A.!!$F2 2137
6 TraesCS6D01G292000 chr1A 16419688 16420421 733 True 848.000000 848 88.060000 2703 3414 1 chr1A.!!$R1 711
7 TraesCS6D01G292000 chr1A 308946724 308947453 729 False 817.000000 817 87.364000 2703 3414 1 chr1A.!!$F1 711
8 TraesCS6D01G292000 chr1A 451284199 451284857 658 True 710.000000 710 86.161000 2747 3414 1 chr1A.!!$R2 667
9 TraesCS6D01G292000 chr7D 213282342 213284465 2123 True 3064.000000 3064 92.854000 689 2794 1 chr7D.!!$R1 2105
10 TraesCS6D01G292000 chr7D 400293702 400294378 676 True 817.000000 817 88.873000 2755 3417 1 chr7D.!!$R2 662
11 TraesCS6D01G292000 chr3D 573052153 573054231 2078 False 2959.000000 2959 92.407000 689 2761 1 chr3D.!!$F3 2072
12 TraesCS6D01G292000 chr3D 573041509 573043584 2075 False 2928.000000 2928 92.163000 689 2761 1 chr3D.!!$F2 2072
13 TraesCS6D01G292000 chr3D 284991670 284993754 2084 False 2892.000000 2892 91.818000 689 2761 1 chr3D.!!$F1 2072
14 TraesCS6D01G292000 chr7B 223702867 223705017 2150 False 2894.000000 2894 91.098000 688 2829 1 chr7B.!!$F1 2141
15 TraesCS6D01G292000 chr7B 697434121 697434949 828 False 1079.000000 1079 90.311000 691 1515 1 chr7B.!!$F2 824
16 TraesCS6D01G292000 chr1D 93503432 93505512 2080 True 2859.000000 2859 91.591000 691 2756 1 chr1D.!!$R1 2065
17 TraesCS6D01G292000 chr4D 468275286 468276016 730 True 928.000000 928 90.054000 2703 3414 1 chr4D.!!$R1 711
18 TraesCS6D01G292000 chr6B 603362751 603363551 800 True 869.000000 869 86.795000 3419 4218 1 chr6B.!!$R1 799
19 TraesCS6D01G292000 chr6A 549235822 549237541 1719 True 448.666667 845 86.344667 116 4257 3 chr6A.!!$R1 4141
20 TraesCS6D01G292000 chr5A 441506327 441506992 665 False 843.000000 843 89.583000 2749 3414 1 chr5A.!!$F1 665
21 TraesCS6D01G292000 chr7A 512748192 512748917 725 True 832.000000 832 87.772000 2703 3416 1 chr7A.!!$R1 713
22 TraesCS6D01G292000 chr7A 474507798 474508462 664 False 763.000000 763 87.481000 2749 3414 1 chr7A.!!$F1 665
23 TraesCS6D01G292000 chr2D 127972973 127973474 501 False 747.000000 747 93.651000 2712 3210 1 chr2D.!!$F1 498
24 TraesCS6D01G292000 chr2D 528546162 528546814 652 True 732.000000 732 86.917000 2755 3416 1 chr2D.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 335 0.037734 CCACCAAGACAACTACCCCC 59.962 60.0 0.00 0.00 0.00 5.40 F
381 776 0.394762 TGTGATGCAAGAGGATGGCC 60.395 55.0 0.00 0.00 0.00 5.36 F
382 777 0.394762 GTGATGCAAGAGGATGGCCA 60.395 55.0 8.56 8.56 36.29 5.36 F
383 778 0.394762 TGATGCAAGAGGATGGCCAC 60.395 55.0 8.16 1.35 36.29 5.01 F
2283 3105 0.738975 CTACGGCCATGAGACTTCGA 59.261 55.0 2.24 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 2596 1.201647 CGAGTCACCATGGTCGTAGTT 59.798 52.381 16.53 0.0 0.00 2.24 R
2340 3164 1.260544 GCCTTGAATGCCTCCAAAGT 58.739 50.000 0.00 0.0 0.00 2.66 R
2363 3188 3.225104 AGTGAATGGCTTGTCATTGTGT 58.775 40.909 5.11 0.0 37.47 3.72 R
2445 3270 3.744660 TCAAGCCTCTCTTCCTTTGAAC 58.255 45.455 0.00 0.0 31.27 3.18 R
4024 5047 0.105224 CTGATCTGCTGGAGCTGGAG 59.895 60.000 0.00 0.0 42.66 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.906998 CATAAATTTGAACCCGTGCACA 58.093 40.909 18.64 0.00 0.00 4.57
22 23 2.217429 AAATTTGAACCCGTGCACAC 57.783 45.000 18.64 3.04 0.00 3.82
23 24 1.107114 AATTTGAACCCGTGCACACA 58.893 45.000 18.64 5.67 0.00 3.72
24 25 1.327303 ATTTGAACCCGTGCACACAT 58.673 45.000 18.64 0.00 0.00 3.21
25 26 1.107114 TTTGAACCCGTGCACACATT 58.893 45.000 18.64 6.92 0.00 2.71
26 27 1.968704 TTGAACCCGTGCACACATTA 58.031 45.000 18.64 0.00 0.00 1.90
27 28 1.518325 TGAACCCGTGCACACATTAG 58.482 50.000 18.64 0.00 0.00 1.73
28 29 0.802494 GAACCCGTGCACACATTAGG 59.198 55.000 18.64 8.46 0.00 2.69
29 30 1.241315 AACCCGTGCACACATTAGGC 61.241 55.000 18.64 0.00 0.00 3.93
30 31 1.673993 CCCGTGCACACATTAGGCA 60.674 57.895 18.64 0.00 34.70 4.75
31 32 1.240641 CCCGTGCACACATTAGGCAA 61.241 55.000 18.64 0.00 39.57 4.52
32 33 0.168788 CCGTGCACACATTAGGCAAG 59.831 55.000 18.64 0.00 39.57 4.01
33 34 0.454957 CGTGCACACATTAGGCAAGC 60.455 55.000 18.64 0.00 39.57 4.01
34 35 0.597568 GTGCACACATTAGGCAAGCA 59.402 50.000 13.17 0.00 39.57 3.91
35 36 1.000385 GTGCACACATTAGGCAAGCAA 60.000 47.619 13.17 0.00 39.57 3.91
36 37 1.000385 TGCACACATTAGGCAAGCAAC 60.000 47.619 0.00 0.00 34.05 4.17
37 38 1.669795 GCACACATTAGGCAAGCAACC 60.670 52.381 0.00 0.00 0.00 3.77
38 39 1.612950 CACACATTAGGCAAGCAACCA 59.387 47.619 0.00 0.00 0.00 3.67
39 40 2.035704 CACACATTAGGCAAGCAACCAA 59.964 45.455 0.00 0.00 0.00 3.67
40 41 2.297033 ACACATTAGGCAAGCAACCAAG 59.703 45.455 0.00 0.00 0.00 3.61
41 42 2.297033 CACATTAGGCAAGCAACCAAGT 59.703 45.455 0.00 0.00 0.00 3.16
42 43 2.965147 ACATTAGGCAAGCAACCAAGTT 59.035 40.909 0.00 0.00 0.00 2.66
43 44 3.243839 ACATTAGGCAAGCAACCAAGTTG 60.244 43.478 3.09 3.09 45.24 3.16
44 45 2.065899 TAGGCAAGCAACCAAGTTGT 57.934 45.000 9.07 0.00 44.40 3.32
45 46 0.746659 AGGCAAGCAACCAAGTTGTC 59.253 50.000 9.07 2.39 44.40 3.18
46 47 0.459489 GGCAAGCAACCAAGTTGTCA 59.541 50.000 9.07 0.00 44.40 3.58
47 48 1.134848 GGCAAGCAACCAAGTTGTCAA 60.135 47.619 9.07 0.00 44.40 3.18
48 49 2.195922 GCAAGCAACCAAGTTGTCAAG 58.804 47.619 9.07 0.00 44.40 3.02
49 50 2.159254 GCAAGCAACCAAGTTGTCAAGA 60.159 45.455 9.07 0.00 44.40 3.02
50 51 3.699067 CAAGCAACCAAGTTGTCAAGAG 58.301 45.455 9.07 0.00 44.40 2.85
51 52 3.004752 AGCAACCAAGTTGTCAAGAGT 57.995 42.857 9.07 0.00 44.40 3.24
52 53 2.945668 AGCAACCAAGTTGTCAAGAGTC 59.054 45.455 9.07 0.00 44.40 3.36
53 54 2.682856 GCAACCAAGTTGTCAAGAGTCA 59.317 45.455 9.07 0.00 44.40 3.41
54 55 3.316308 GCAACCAAGTTGTCAAGAGTCAT 59.684 43.478 9.07 0.00 44.40 3.06
55 56 4.555511 GCAACCAAGTTGTCAAGAGTCATC 60.556 45.833 9.07 0.00 44.40 2.92
56 57 3.393800 ACCAAGTTGTCAAGAGTCATCG 58.606 45.455 1.45 0.00 0.00 3.84
57 58 2.738846 CCAAGTTGTCAAGAGTCATCGG 59.261 50.000 1.45 0.00 0.00 4.18
58 59 3.554960 CCAAGTTGTCAAGAGTCATCGGA 60.555 47.826 1.45 0.00 0.00 4.55
59 60 3.584406 AGTTGTCAAGAGTCATCGGAG 57.416 47.619 0.00 0.00 0.00 4.63
60 61 2.894126 AGTTGTCAAGAGTCATCGGAGT 59.106 45.455 0.00 0.00 0.00 3.85
61 62 3.057174 AGTTGTCAAGAGTCATCGGAGTC 60.057 47.826 0.00 0.00 42.71 3.36
62 63 1.468914 TGTCAAGAGTCATCGGAGTCG 59.531 52.381 0.00 0.00 46.18 4.18
63 64 0.452184 TCAAGAGTCATCGGAGTCGC 59.548 55.000 0.00 0.00 46.18 5.19
64 65 0.171231 CAAGAGTCATCGGAGTCGCA 59.829 55.000 0.00 0.00 46.18 5.10
65 66 0.888619 AAGAGTCATCGGAGTCGCAA 59.111 50.000 0.00 0.00 46.18 4.85
66 67 0.888619 AGAGTCATCGGAGTCGCAAA 59.111 50.000 0.00 0.00 46.18 3.68
67 68 1.478510 AGAGTCATCGGAGTCGCAAAT 59.521 47.619 0.00 0.00 46.18 2.32
68 69 2.688446 AGAGTCATCGGAGTCGCAAATA 59.312 45.455 0.00 0.00 46.18 1.40
69 70 3.319405 AGAGTCATCGGAGTCGCAAATAT 59.681 43.478 0.00 0.00 46.18 1.28
70 71 4.519350 AGAGTCATCGGAGTCGCAAATATA 59.481 41.667 0.00 0.00 46.18 0.86
71 72 5.184096 AGAGTCATCGGAGTCGCAAATATAT 59.816 40.000 0.00 0.00 46.18 0.86
72 73 5.164233 AGTCATCGGAGTCGCAAATATATG 58.836 41.667 0.00 0.00 36.13 1.78
73 74 4.923871 GTCATCGGAGTCGCAAATATATGT 59.076 41.667 0.00 0.00 36.13 2.29
74 75 5.061064 GTCATCGGAGTCGCAAATATATGTC 59.939 44.000 0.00 0.00 36.13 3.06
75 76 3.561503 TCGGAGTCGCAAATATATGTCG 58.438 45.455 0.00 0.00 36.13 4.35
76 77 2.661675 CGGAGTCGCAAATATATGTCGG 59.338 50.000 0.00 0.00 0.00 4.79
77 78 2.412089 GGAGTCGCAAATATATGTCGGC 59.588 50.000 0.00 0.00 0.00 5.54
78 79 3.318017 GAGTCGCAAATATATGTCGGCT 58.682 45.455 7.93 7.93 37.44 5.52
79 80 3.318017 AGTCGCAAATATATGTCGGCTC 58.682 45.455 3.70 0.00 32.26 4.70
80 81 3.057019 GTCGCAAATATATGTCGGCTCA 58.943 45.455 0.00 0.00 0.00 4.26
81 82 3.057019 TCGCAAATATATGTCGGCTCAC 58.943 45.455 0.00 0.00 0.00 3.51
82 83 2.799978 CGCAAATATATGTCGGCTCACA 59.200 45.455 0.00 0.00 0.00 3.58
83 84 3.362986 CGCAAATATATGTCGGCTCACAC 60.363 47.826 0.00 0.00 0.00 3.82
84 85 3.058914 GCAAATATATGTCGGCTCACACC 60.059 47.826 0.00 0.00 0.00 4.16
85 86 4.126437 CAAATATATGTCGGCTCACACCA 58.874 43.478 0.00 0.00 0.00 4.17
86 87 3.667497 ATATATGTCGGCTCACACCAG 57.333 47.619 0.00 0.00 0.00 4.00
87 88 1.195115 ATATGTCGGCTCACACCAGT 58.805 50.000 0.00 0.00 0.00 4.00
88 89 0.973632 TATGTCGGCTCACACCAGTT 59.026 50.000 0.00 0.00 0.00 3.16
89 90 0.603707 ATGTCGGCTCACACCAGTTG 60.604 55.000 0.00 0.00 0.00 3.16
90 91 2.280797 TCGGCTCACACCAGTTGC 60.281 61.111 0.00 0.00 0.00 4.17
91 92 2.591429 CGGCTCACACCAGTTGCA 60.591 61.111 0.00 0.00 0.00 4.08
92 93 1.968017 CGGCTCACACCAGTTGCAT 60.968 57.895 0.00 0.00 0.00 3.96
93 94 1.518056 CGGCTCACACCAGTTGCATT 61.518 55.000 0.00 0.00 0.00 3.56
94 95 0.675633 GGCTCACACCAGTTGCATTT 59.324 50.000 0.00 0.00 0.00 2.32
95 96 1.336240 GGCTCACACCAGTTGCATTTC 60.336 52.381 0.00 0.00 0.00 2.17
96 97 1.337703 GCTCACACCAGTTGCATTTCA 59.662 47.619 0.00 0.00 0.00 2.69
97 98 2.223782 GCTCACACCAGTTGCATTTCAA 60.224 45.455 0.00 0.00 0.00 2.69
98 99 3.737663 GCTCACACCAGTTGCATTTCAAA 60.738 43.478 0.00 0.00 36.26 2.69
99 100 4.044336 TCACACCAGTTGCATTTCAAAG 57.956 40.909 0.00 0.00 36.26 2.77
100 101 3.125316 CACACCAGTTGCATTTCAAAGG 58.875 45.455 0.00 0.00 37.83 3.11
101 102 2.137523 CACCAGTTGCATTTCAAAGGC 58.862 47.619 0.00 0.00 36.25 4.35
102 103 1.761784 ACCAGTTGCATTTCAAAGGCA 59.238 42.857 5.11 5.11 36.25 4.75
103 104 2.369532 ACCAGTTGCATTTCAAAGGCAT 59.630 40.909 10.80 0.00 37.39 4.40
104 105 2.997986 CCAGTTGCATTTCAAAGGCATC 59.002 45.455 10.80 9.98 37.39 3.91
105 106 3.555377 CCAGTTGCATTTCAAAGGCATCA 60.555 43.478 17.57 0.00 37.39 3.07
106 107 4.250464 CAGTTGCATTTCAAAGGCATCAT 58.750 39.130 17.57 2.51 37.39 2.45
107 108 4.693566 CAGTTGCATTTCAAAGGCATCATT 59.306 37.500 17.57 0.00 37.39 2.57
108 109 4.933400 AGTTGCATTTCAAAGGCATCATTC 59.067 37.500 17.57 4.98 37.39 2.67
109 110 4.811969 TGCATTTCAAAGGCATCATTCT 57.188 36.364 5.11 0.00 31.58 2.40
110 111 5.155278 TGCATTTCAAAGGCATCATTCTT 57.845 34.783 5.11 0.00 31.58 2.52
111 112 4.932799 TGCATTTCAAAGGCATCATTCTTG 59.067 37.500 5.11 0.00 31.58 3.02
112 113 4.933400 GCATTTCAAAGGCATCATTCTTGT 59.067 37.500 0.90 0.00 0.00 3.16
113 114 5.063060 GCATTTCAAAGGCATCATTCTTGTC 59.937 40.000 0.90 0.00 0.00 3.18
114 115 6.395629 CATTTCAAAGGCATCATTCTTGTCT 58.604 36.000 0.00 0.00 0.00 3.41
132 133 1.453745 TCCAATGGGGAATGCGAGC 60.454 57.895 0.00 0.00 44.80 5.03
134 135 1.731433 CCAATGGGGAATGCGAGCTG 61.731 60.000 0.00 0.00 40.01 4.24
139 140 2.510238 GGAATGCGAGCTGAGCGT 60.510 61.111 0.00 0.00 37.44 5.07
150 151 1.211818 GCTGAGCGTCGTCATCATCC 61.212 60.000 0.00 0.00 0.00 3.51
164 165 1.224315 CATCCGATCCAGGCAACCA 59.776 57.895 0.00 0.00 37.17 3.67
192 193 0.526211 GGGTTTCCCTCAACGCATTC 59.474 55.000 0.00 0.00 41.34 2.67
195 196 1.200020 GTTTCCCTCAACGCATTCTGG 59.800 52.381 0.00 0.00 0.00 3.86
196 197 0.322456 TTCCCTCAACGCATTCTGGG 60.322 55.000 0.00 0.00 36.28 4.45
197 198 1.750399 CCCTCAACGCATTCTGGGG 60.750 63.158 0.00 0.00 34.28 4.96
198 199 1.750399 CCTCAACGCATTCTGGGGG 60.750 63.158 0.00 0.00 34.28 5.40
231 232 3.428999 GGAGTCGAGGATTTCATGTCGAA 60.429 47.826 5.54 0.00 42.66 3.71
312 328 0.248866 CGCCAAACCACCAAGACAAC 60.249 55.000 0.00 0.00 0.00 3.32
313 329 1.111277 GCCAAACCACCAAGACAACT 58.889 50.000 0.00 0.00 0.00 3.16
314 330 2.303175 GCCAAACCACCAAGACAACTA 58.697 47.619 0.00 0.00 0.00 2.24
315 331 2.034179 GCCAAACCACCAAGACAACTAC 59.966 50.000 0.00 0.00 0.00 2.73
316 332 2.621526 CCAAACCACCAAGACAACTACC 59.378 50.000 0.00 0.00 0.00 3.18
317 333 2.621526 CAAACCACCAAGACAACTACCC 59.378 50.000 0.00 0.00 0.00 3.69
318 334 0.769247 ACCACCAAGACAACTACCCC 59.231 55.000 0.00 0.00 0.00 4.95
319 335 0.037734 CCACCAAGACAACTACCCCC 59.962 60.000 0.00 0.00 0.00 5.40
350 745 4.619227 CGCCACGACCAACACCCT 62.619 66.667 0.00 0.00 0.00 4.34
356 751 4.947147 GACCAACACCCTGCCGCA 62.947 66.667 0.00 0.00 0.00 5.69
357 752 4.514585 ACCAACACCCTGCCGCAA 62.515 61.111 0.00 0.00 0.00 4.85
358 753 3.222855 CCAACACCCTGCCGCAAA 61.223 61.111 0.00 0.00 0.00 3.68
359 754 2.336088 CAACACCCTGCCGCAAAG 59.664 61.111 0.00 0.00 0.00 2.77
360 755 3.605664 AACACCCTGCCGCAAAGC 61.606 61.111 0.00 0.00 0.00 3.51
361 756 4.892965 ACACCCTGCCGCAAAGCA 62.893 61.111 0.00 0.00 41.46 3.91
362 757 3.376078 CACCCTGCCGCAAAGCAT 61.376 61.111 0.00 0.00 43.09 3.79
363 758 3.376078 ACCCTGCCGCAAAGCATG 61.376 61.111 0.00 0.00 43.09 4.06
364 759 3.376078 CCCTGCCGCAAAGCATGT 61.376 61.111 0.00 0.00 43.09 3.21
365 760 2.126228 CCTGCCGCAAAGCATGTG 60.126 61.111 0.00 0.00 43.09 3.21
366 761 2.628696 CCTGCCGCAAAGCATGTGA 61.629 57.895 4.80 0.00 43.09 3.58
367 762 1.509463 CTGCCGCAAAGCATGTGAT 59.491 52.632 4.80 0.00 43.09 3.06
368 763 0.800683 CTGCCGCAAAGCATGTGATG 60.801 55.000 4.80 0.00 43.09 3.07
380 775 1.337071 CATGTGATGCAAGAGGATGGC 59.663 52.381 0.00 0.00 0.00 4.40
381 776 0.394762 TGTGATGCAAGAGGATGGCC 60.395 55.000 0.00 0.00 0.00 5.36
382 777 0.394762 GTGATGCAAGAGGATGGCCA 60.395 55.000 8.56 8.56 36.29 5.36
383 778 0.394762 TGATGCAAGAGGATGGCCAC 60.395 55.000 8.16 1.35 36.29 5.01
384 779 1.076485 ATGCAAGAGGATGGCCACC 60.076 57.895 8.16 12.35 36.29 4.61
385 780 1.866483 ATGCAAGAGGATGGCCACCA 61.866 55.000 21.71 5.11 38.19 4.17
386 781 2.048603 GCAAGAGGATGGCCACCAC 61.049 63.158 21.71 16.82 35.80 4.16
387 782 1.379916 CAAGAGGATGGCCACCACA 59.620 57.895 21.71 0.00 35.80 4.17
388 783 0.962356 CAAGAGGATGGCCACCACAC 60.962 60.000 21.71 14.00 35.80 3.82
389 784 2.044946 GAGGATGGCCACCACACC 60.045 66.667 21.71 14.35 35.80 4.16
390 785 2.532715 AGGATGGCCACCACACCT 60.533 61.111 21.71 16.01 38.28 4.00
391 786 1.229820 AGGATGGCCACCACACCTA 60.230 57.895 21.71 0.00 40.16 3.08
392 787 1.224592 GGATGGCCACCACACCTAG 59.775 63.158 8.16 0.00 35.80 3.02
393 788 1.224592 GATGGCCACCACACCTAGG 59.775 63.158 8.16 7.41 35.80 3.02
394 789 2.270874 GATGGCCACCACACCTAGGG 62.271 65.000 8.16 4.64 35.80 3.53
395 790 4.426313 GGCCACCACACCTAGGGC 62.426 72.222 14.81 4.45 43.86 5.19
396 791 4.778143 GCCACCACACCTAGGGCG 62.778 72.222 14.81 6.31 34.56 6.13
397 792 3.000819 CCACCACACCTAGGGCGA 61.001 66.667 14.81 0.00 0.00 5.54
398 793 2.589157 CCACCACACCTAGGGCGAA 61.589 63.158 14.81 0.00 0.00 4.70
399 794 1.079127 CACCACACCTAGGGCGAAG 60.079 63.158 14.81 0.00 0.00 3.79
400 795 2.291043 ACCACACCTAGGGCGAAGG 61.291 63.158 14.81 13.02 40.20 3.46
419 814 3.122850 CGCAAATGGGGATGCTCC 58.877 61.111 0.00 0.00 35.23 4.70
421 816 2.492773 GCAAATGGGGATGCTCCGG 61.493 63.158 0.00 0.00 37.43 5.14
460 855 1.524621 GTGGAGATGTGGATGCCGG 60.525 63.158 0.00 0.00 0.00 6.13
534 929 1.373497 CATCGCTAGGTGATCCGCC 60.373 63.158 0.00 0.00 39.05 6.13
535 930 1.832608 ATCGCTAGGTGATCCGCCA 60.833 57.895 6.25 0.00 36.32 5.69
565 960 2.610859 GAAGGAGGTGGAGCCCCA 60.611 66.667 0.00 0.00 40.95 4.96
603 998 2.355481 GTGAACTTCGCCCGACGT 60.355 61.111 0.00 0.00 44.19 4.34
604 999 1.952635 GTGAACTTCGCCCGACGTT 60.953 57.895 11.53 11.53 44.19 3.99
614 1009 4.143333 CCGACGTTGGCCTCCGAT 62.143 66.667 19.28 5.72 0.00 4.18
616 1011 2.511600 GACGTTGGCCTCCGATGG 60.512 66.667 19.28 0.00 0.00 3.51
666 1061 3.575351 AAGGCAGCGGAGACACGTC 62.575 63.158 0.00 0.00 35.98 4.34
667 1062 4.357947 GGCAGCGGAGACACGTCA 62.358 66.667 0.00 0.00 35.98 4.35
672 1067 1.103803 AGCGGAGACACGTCATACAT 58.896 50.000 0.00 0.00 35.98 2.29
673 1068 1.476891 AGCGGAGACACGTCATACATT 59.523 47.619 0.00 0.00 35.98 2.71
678 1073 4.566759 CGGAGACACGTCATACATTTCATT 59.433 41.667 0.00 0.00 0.00 2.57
680 1075 5.351465 GGAGACACGTCATACATTTCATTGT 59.649 40.000 0.00 0.00 0.00 2.71
683 1078 6.312918 AGACACGTCATACATTTCATTGTACC 59.687 38.462 0.00 0.00 35.04 3.34
706 1185 1.847798 ATAAGGCCAACTCCACCGCA 61.848 55.000 5.01 0.00 0.00 5.69
721 1200 2.351276 GCACGACCCCATCCTGTT 59.649 61.111 0.00 0.00 0.00 3.16
900 1438 1.078848 GCGCTTGTCCTCATCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
1004 1553 1.386485 CCTCTCCCCCATCCATGGT 60.386 63.158 12.58 0.00 46.65 3.55
1025 1574 4.830765 CGCCCAGCCGAATTCCGA 62.831 66.667 0.00 0.00 41.76 4.55
1204 1762 2.978010 CCAAGTTCGCCGCCAAGT 60.978 61.111 0.00 0.00 0.00 3.16
1258 1816 1.424635 GTCGACGAGAAGGAGGACG 59.575 63.158 0.00 0.00 0.00 4.79
1322 1880 4.660938 GGCCGGTTTCCCTGCAGT 62.661 66.667 13.81 0.00 42.36 4.40
1517 2312 1.200252 CATCGACCTCAACGTCACTCT 59.800 52.381 0.00 0.00 32.74 3.24
1518 2313 0.873054 TCGACCTCAACGTCACTCTC 59.127 55.000 0.00 0.00 32.74 3.20
1527 2322 1.972223 CGTCACTCTCGGGTCCAGT 60.972 63.158 0.00 0.00 0.00 4.00
1743 2556 1.002134 CCAAAGTCAGGATGGCCGT 60.002 57.895 0.00 0.00 46.31 5.68
1973 2794 6.703607 GGTTCATATACACAAGATGAGGACAG 59.296 42.308 0.00 0.00 31.50 3.51
2283 3105 0.738975 CTACGGCCATGAGACTTCGA 59.261 55.000 2.24 0.00 0.00 3.71
2340 3164 4.148079 TCATGTGGTGTAGGCATTTCAAA 58.852 39.130 0.00 0.00 0.00 2.69
2445 3270 3.328382 TCAAGGACCAATACCGTGAAG 57.672 47.619 0.00 0.00 41.33 3.02
2463 3288 3.392616 TGAAGTTCAAAGGAAGAGAGGCT 59.607 43.478 2.20 0.00 32.62 4.58
2730 3555 2.091610 AGGAAGATCGACATGGAGGAGA 60.092 50.000 0.00 0.00 0.00 3.71
2731 3556 2.035321 GGAAGATCGACATGGAGGAGAC 59.965 54.545 0.00 0.00 0.00 3.36
2732 3557 1.313772 AGATCGACATGGAGGAGACG 58.686 55.000 0.00 0.00 0.00 4.18
2733 3558 0.312416 GATCGACATGGAGGAGACGG 59.688 60.000 0.00 0.00 0.00 4.79
2734 3559 1.739338 ATCGACATGGAGGAGACGGC 61.739 60.000 0.00 0.00 0.00 5.68
2735 3560 2.501610 GACATGGAGGAGACGGCC 59.498 66.667 0.00 0.00 0.00 6.13
2736 3561 3.083997 ACATGGAGGAGACGGCCC 61.084 66.667 0.00 0.00 0.00 5.80
2737 3562 4.227134 CATGGAGGAGACGGCCCG 62.227 72.222 0.00 0.00 0.00 6.13
3235 4230 2.827921 ACTAGGGCTTGGCATTTGAAAG 59.172 45.455 0.00 0.00 0.00 2.62
3236 4231 1.720781 AGGGCTTGGCATTTGAAAGT 58.279 45.000 0.00 0.00 0.00 2.66
3238 4233 2.145536 GGGCTTGGCATTTGAAAGTTG 58.854 47.619 0.00 0.00 0.00 3.16
3241 4236 2.477754 GCTTGGCATTTGAAAGTTGCTC 59.522 45.455 3.84 0.00 36.62 4.26
3382 4385 5.160607 ACAGAATCCAGATAAAACGGACA 57.839 39.130 0.00 0.00 0.00 4.02
3417 4420 1.583495 GCGGTGAAGTTGGCCTAACC 61.583 60.000 3.32 0.00 40.24 2.85
3418 4421 0.958876 CGGTGAAGTTGGCCTAACCC 60.959 60.000 3.32 3.05 40.24 4.11
3419 4422 0.611062 GGTGAAGTTGGCCTAACCCC 60.611 60.000 3.32 2.79 40.24 4.95
3420 4423 0.611062 GTGAAGTTGGCCTAACCCCC 60.611 60.000 3.32 0.46 40.24 5.40
3448 4451 4.854399 TGAACATTTTGACGTCCAATCAC 58.146 39.130 14.12 5.86 34.23 3.06
3463 4468 3.364565 CCAATCACGTAAGAAAACCCACG 60.365 47.826 0.00 0.00 43.62 4.94
3554 4559 0.944386 ACCACTTTAGCTTGCGTGTG 59.056 50.000 0.00 0.00 0.00 3.82
3583 4593 3.431626 GGAAGGAAACCAAACCAAACCAG 60.432 47.826 0.00 0.00 0.00 4.00
3597 4607 0.532862 AACCAGACCACGCTGTCTTG 60.533 55.000 4.79 4.87 42.92 3.02
3705 4723 0.593128 TTCGCTTTGCTTCTGCTTCC 59.407 50.000 0.00 0.00 40.48 3.46
3713 4731 4.697756 TTCTGCTTCCGGCCGTGG 62.698 66.667 26.12 14.36 40.92 4.94
3726 4744 3.199190 CGTGGCCGTGTGTGTGTT 61.199 61.111 0.00 0.00 0.00 3.32
3729 4747 1.675972 TGGCCGTGTGTGTGTTTGT 60.676 52.632 0.00 0.00 0.00 2.83
3730 4748 1.226547 GGCCGTGTGTGTGTTTGTG 60.227 57.895 0.00 0.00 0.00 3.33
3732 4750 0.796491 GCCGTGTGTGTGTTTGTGTG 60.796 55.000 0.00 0.00 0.00 3.82
3733 4751 0.519519 CCGTGTGTGTGTTTGTGTGT 59.480 50.000 0.00 0.00 0.00 3.72
3735 4753 1.727535 CGTGTGTGTGTTTGTGTGTGG 60.728 52.381 0.00 0.00 0.00 4.17
3736 4754 1.537638 GTGTGTGTGTTTGTGTGTGGA 59.462 47.619 0.00 0.00 0.00 4.02
3737 4755 2.163412 GTGTGTGTGTTTGTGTGTGGAT 59.837 45.455 0.00 0.00 0.00 3.41
3738 4756 2.421775 TGTGTGTGTTTGTGTGTGGATC 59.578 45.455 0.00 0.00 0.00 3.36
3798 4816 3.587933 GCGCCACGTGACCCAAAA 61.588 61.111 19.30 0.00 0.00 2.44
3800 4818 2.903547 CGCCACGTGACCCAAAAGG 61.904 63.158 19.30 0.00 43.78 3.11
3801 4819 1.527380 GCCACGTGACCCAAAAGGA 60.527 57.895 19.30 0.00 39.89 3.36
3803 4821 0.179029 CCACGTGACCCAAAAGGACT 60.179 55.000 19.30 0.00 39.89 3.85
3805 4823 0.108019 ACGTGACCCAAAAGGACTCC 59.892 55.000 0.00 0.00 39.89 3.85
3807 4825 1.072505 TGACCCAAAAGGACTCCGC 59.927 57.895 0.00 0.00 39.89 5.54
3808 4826 2.032071 ACCCAAAAGGACTCCGCG 59.968 61.111 0.00 0.00 39.89 6.46
3809 4827 2.746277 CCCAAAAGGACTCCGCGG 60.746 66.667 22.12 22.12 38.24 6.46
3810 4828 2.746277 CCAAAAGGACTCCGCGGG 60.746 66.667 27.83 18.67 0.00 6.13
3811 4829 2.032071 CAAAAGGACTCCGCGGGT 59.968 61.111 27.83 22.07 0.00 5.28
3812 4830 2.033194 CAAAAGGACTCCGCGGGTC 61.033 63.158 28.27 28.27 0.00 4.46
3813 4831 3.584868 AAAAGGACTCCGCGGGTCG 62.585 63.158 28.63 19.77 34.82 4.79
3826 4844 4.120331 GGTCGCTGGCATTGGCAC 62.120 66.667 9.11 5.86 43.71 5.01
3827 4845 4.120331 GTCGCTGGCATTGGCACC 62.120 66.667 9.11 1.88 43.71 5.01
3831 4849 4.387343 CTGGCATTGGCACCCCCT 62.387 66.667 9.11 0.00 43.71 4.79
3832 4850 2.943827 TGGCATTGGCACCCCCTA 60.944 61.111 9.11 0.00 43.71 3.53
3833 4851 2.442087 GGCATTGGCACCCCCTAC 60.442 66.667 5.17 0.00 43.71 3.18
3834 4852 2.683475 GCATTGGCACCCCCTACT 59.317 61.111 0.00 0.00 40.72 2.57
3909 4931 2.736826 CCGGCTTCTTCCTCTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
3952 4974 2.613482 GGTTGGTTCCCTCCTCCCC 61.613 68.421 0.00 0.00 0.00 4.81
4018 5041 1.755008 GCCACCCGTAGCTCTCTCT 60.755 63.158 0.00 0.00 0.00 3.10
4019 5042 1.730451 GCCACCCGTAGCTCTCTCTC 61.730 65.000 0.00 0.00 0.00 3.20
4020 5043 1.104577 CCACCCGTAGCTCTCTCTCC 61.105 65.000 0.00 0.00 0.00 3.71
4021 5044 0.394488 CACCCGTAGCTCTCTCTCCA 60.394 60.000 0.00 0.00 0.00 3.86
4022 5045 0.106918 ACCCGTAGCTCTCTCTCCAG 60.107 60.000 0.00 0.00 0.00 3.86
4023 5046 1.452145 CCCGTAGCTCTCTCTCCAGC 61.452 65.000 0.00 0.00 35.73 4.85
4024 5047 1.452145 CCGTAGCTCTCTCTCCAGCC 61.452 65.000 0.00 0.00 36.17 4.85
4025 5048 0.465460 CGTAGCTCTCTCTCCAGCCT 60.465 60.000 0.00 0.00 36.17 4.58
4026 5049 1.318576 GTAGCTCTCTCTCCAGCCTC 58.681 60.000 0.00 0.00 36.17 4.70
4027 5050 0.184933 TAGCTCTCTCTCCAGCCTCC 59.815 60.000 0.00 0.00 36.17 4.30
4028 5051 1.381056 GCTCTCTCTCCAGCCTCCA 60.381 63.158 0.00 0.00 0.00 3.86
4029 5052 1.394266 GCTCTCTCTCCAGCCTCCAG 61.394 65.000 0.00 0.00 0.00 3.86
4030 5053 1.381056 TCTCTCTCCAGCCTCCAGC 60.381 63.158 0.00 0.00 44.25 4.85
4105 5139 2.352457 CTTCCGCCGTCGATCTCG 60.352 66.667 0.00 0.00 38.10 4.04
4115 5149 2.279784 CGATCTCGGCCAGCCTTC 60.280 66.667 2.24 0.00 35.37 3.46
4131 5165 4.750695 TCCGCCCCCTCCATTCCA 62.751 66.667 0.00 0.00 0.00 3.53
4132 5166 4.506255 CCGCCCCCTCCATTCCAC 62.506 72.222 0.00 0.00 0.00 4.02
4133 5167 4.506255 CGCCCCCTCCATTCCACC 62.506 72.222 0.00 0.00 0.00 4.61
4134 5168 4.506255 GCCCCCTCCATTCCACCG 62.506 72.222 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.688446 TGTGTGCACGGGTTCAAATTTA 59.312 40.909 13.13 0.00 0.00 1.40
3 4 1.478510 TGTGTGCACGGGTTCAAATTT 59.521 42.857 13.13 0.00 0.00 1.82
4 5 1.107114 TGTGTGCACGGGTTCAAATT 58.893 45.000 13.13 0.00 0.00 1.82
5 6 1.327303 ATGTGTGCACGGGTTCAAAT 58.673 45.000 13.13 0.00 0.00 2.32
6 7 1.107114 AATGTGTGCACGGGTTCAAA 58.893 45.000 13.13 0.00 0.00 2.69
8 9 1.518325 CTAATGTGTGCACGGGTTCA 58.482 50.000 13.13 6.65 0.00 3.18
9 10 0.802494 CCTAATGTGTGCACGGGTTC 59.198 55.000 13.13 0.86 0.00 3.62
10 11 1.241315 GCCTAATGTGTGCACGGGTT 61.241 55.000 13.13 8.84 0.00 4.11
11 12 1.674322 GCCTAATGTGTGCACGGGT 60.674 57.895 13.13 0.00 0.00 5.28
12 13 1.240641 TTGCCTAATGTGTGCACGGG 61.241 55.000 13.13 8.18 34.16 5.28
13 14 0.168788 CTTGCCTAATGTGTGCACGG 59.831 55.000 13.13 7.11 34.16 4.94
14 15 0.454957 GCTTGCCTAATGTGTGCACG 60.455 55.000 13.13 0.00 34.16 5.34
15 16 0.597568 TGCTTGCCTAATGTGTGCAC 59.402 50.000 10.75 10.75 34.16 4.57
16 17 1.000385 GTTGCTTGCCTAATGTGTGCA 60.000 47.619 0.00 0.00 0.00 4.57
17 18 1.669795 GGTTGCTTGCCTAATGTGTGC 60.670 52.381 0.00 0.00 0.00 4.57
18 19 1.612950 TGGTTGCTTGCCTAATGTGTG 59.387 47.619 0.00 0.00 0.00 3.82
19 20 1.993956 TGGTTGCTTGCCTAATGTGT 58.006 45.000 0.00 0.00 0.00 3.72
20 21 2.297033 ACTTGGTTGCTTGCCTAATGTG 59.703 45.455 0.00 0.00 0.00 3.21
21 22 2.597455 ACTTGGTTGCTTGCCTAATGT 58.403 42.857 0.00 0.00 0.00 2.71
22 23 3.243839 ACAACTTGGTTGCTTGCCTAATG 60.244 43.478 9.89 0.00 46.20 1.90
23 24 2.965147 ACAACTTGGTTGCTTGCCTAAT 59.035 40.909 9.89 0.00 46.20 1.73
24 25 2.360801 GACAACTTGGTTGCTTGCCTAA 59.639 45.455 9.89 0.00 46.20 2.69
25 26 1.953686 GACAACTTGGTTGCTTGCCTA 59.046 47.619 9.89 0.00 46.20 3.93
26 27 0.746659 GACAACTTGGTTGCTTGCCT 59.253 50.000 9.89 0.00 46.20 4.75
27 28 0.459489 TGACAACTTGGTTGCTTGCC 59.541 50.000 9.89 0.00 46.20 4.52
28 29 2.159254 TCTTGACAACTTGGTTGCTTGC 60.159 45.455 9.89 0.00 46.20 4.01
29 30 3.129287 ACTCTTGACAACTTGGTTGCTTG 59.871 43.478 9.89 0.36 46.20 4.01
30 31 3.356290 ACTCTTGACAACTTGGTTGCTT 58.644 40.909 9.89 0.00 46.20 3.91
31 32 2.945668 GACTCTTGACAACTTGGTTGCT 59.054 45.455 9.89 0.00 46.20 3.91
32 33 2.682856 TGACTCTTGACAACTTGGTTGC 59.317 45.455 9.89 4.65 46.20 4.17
34 35 3.809832 CGATGACTCTTGACAACTTGGTT 59.190 43.478 0.00 0.00 0.00 3.67
35 36 3.393800 CGATGACTCTTGACAACTTGGT 58.606 45.455 0.00 0.00 0.00 3.67
36 37 2.738846 CCGATGACTCTTGACAACTTGG 59.261 50.000 0.00 0.00 0.00 3.61
37 38 3.653344 TCCGATGACTCTTGACAACTTG 58.347 45.455 0.00 0.00 0.00 3.16
38 39 3.322254 ACTCCGATGACTCTTGACAACTT 59.678 43.478 0.00 0.00 0.00 2.66
39 40 2.894126 ACTCCGATGACTCTTGACAACT 59.106 45.455 0.00 0.00 0.00 3.16
40 41 3.246619 GACTCCGATGACTCTTGACAAC 58.753 50.000 0.00 0.00 0.00 3.32
41 42 2.095212 CGACTCCGATGACTCTTGACAA 60.095 50.000 0.00 0.00 38.22 3.18
42 43 1.468914 CGACTCCGATGACTCTTGACA 59.531 52.381 0.00 0.00 38.22 3.58
43 44 1.795889 GCGACTCCGATGACTCTTGAC 60.796 57.143 0.00 0.00 38.22 3.18
44 45 0.452184 GCGACTCCGATGACTCTTGA 59.548 55.000 0.00 0.00 38.22 3.02
45 46 0.171231 TGCGACTCCGATGACTCTTG 59.829 55.000 0.00 0.00 38.22 3.02
46 47 0.888619 TTGCGACTCCGATGACTCTT 59.111 50.000 0.00 0.00 38.22 2.85
47 48 0.888619 TTTGCGACTCCGATGACTCT 59.111 50.000 0.00 0.00 38.22 3.24
48 49 1.927895 ATTTGCGACTCCGATGACTC 58.072 50.000 0.00 0.00 38.22 3.36
49 50 3.735237 ATATTTGCGACTCCGATGACT 57.265 42.857 0.00 0.00 38.22 3.41
50 51 4.923871 ACATATATTTGCGACTCCGATGAC 59.076 41.667 0.00 0.00 38.22 3.06
51 52 5.134202 ACATATATTTGCGACTCCGATGA 57.866 39.130 0.00 0.00 38.22 2.92
52 53 4.030641 CGACATATATTTGCGACTCCGATG 59.969 45.833 0.00 0.00 38.22 3.84
53 54 4.166523 CGACATATATTTGCGACTCCGAT 58.833 43.478 0.00 0.00 38.22 4.18
54 55 3.561503 CGACATATATTTGCGACTCCGA 58.438 45.455 0.00 0.00 38.22 4.55
55 56 2.661675 CCGACATATATTTGCGACTCCG 59.338 50.000 10.01 0.00 39.16 4.63
56 57 2.412089 GCCGACATATATTTGCGACTCC 59.588 50.000 10.01 0.00 0.00 3.85
57 58 3.318017 AGCCGACATATATTTGCGACTC 58.682 45.455 10.01 0.00 0.00 3.36
58 59 3.243737 TGAGCCGACATATATTTGCGACT 60.244 43.478 10.01 5.50 0.00 4.18
59 60 3.057019 TGAGCCGACATATATTTGCGAC 58.943 45.455 10.01 1.75 0.00 5.19
60 61 3.057019 GTGAGCCGACATATATTTGCGA 58.943 45.455 10.01 0.00 0.00 5.10
61 62 2.799978 TGTGAGCCGACATATATTTGCG 59.200 45.455 0.00 0.00 0.00 4.85
62 63 3.058914 GGTGTGAGCCGACATATATTTGC 60.059 47.826 0.00 0.00 0.00 3.68
63 64 4.126437 TGGTGTGAGCCGACATATATTTG 58.874 43.478 0.00 0.00 0.00 2.32
64 65 4.141711 ACTGGTGTGAGCCGACATATATTT 60.142 41.667 0.00 0.00 0.00 1.40
65 66 3.388024 ACTGGTGTGAGCCGACATATATT 59.612 43.478 0.00 0.00 0.00 1.28
66 67 2.965831 ACTGGTGTGAGCCGACATATAT 59.034 45.455 0.00 0.00 0.00 0.86
67 68 2.384828 ACTGGTGTGAGCCGACATATA 58.615 47.619 0.00 0.00 0.00 0.86
68 69 1.195115 ACTGGTGTGAGCCGACATAT 58.805 50.000 0.00 0.00 0.00 1.78
69 70 0.973632 AACTGGTGTGAGCCGACATA 59.026 50.000 0.00 0.00 0.00 2.29
70 71 0.603707 CAACTGGTGTGAGCCGACAT 60.604 55.000 0.00 0.00 0.00 3.06
71 72 1.227527 CAACTGGTGTGAGCCGACA 60.228 57.895 0.00 0.00 0.00 4.35
72 73 2.607892 GCAACTGGTGTGAGCCGAC 61.608 63.158 0.00 0.00 0.00 4.79
73 74 2.280797 GCAACTGGTGTGAGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
74 75 1.518056 AATGCAACTGGTGTGAGCCG 61.518 55.000 0.00 0.00 0.00 5.52
75 76 0.675633 AAATGCAACTGGTGTGAGCC 59.324 50.000 0.00 0.00 0.00 4.70
76 77 1.337703 TGAAATGCAACTGGTGTGAGC 59.662 47.619 0.00 0.00 0.00 4.26
77 78 3.713858 TTGAAATGCAACTGGTGTGAG 57.286 42.857 0.00 0.00 0.00 3.51
78 79 3.181477 CCTTTGAAATGCAACTGGTGTGA 60.181 43.478 0.00 0.00 35.91 3.58
79 80 3.125316 CCTTTGAAATGCAACTGGTGTG 58.875 45.455 0.00 0.00 35.91 3.82
80 81 2.483538 GCCTTTGAAATGCAACTGGTGT 60.484 45.455 0.22 0.00 35.91 4.16
81 82 2.137523 GCCTTTGAAATGCAACTGGTG 58.862 47.619 0.22 0.00 35.91 4.17
82 83 1.761784 TGCCTTTGAAATGCAACTGGT 59.238 42.857 5.40 0.00 35.91 4.00
83 84 2.529780 TGCCTTTGAAATGCAACTGG 57.470 45.000 5.40 0.00 35.91 4.00
84 85 3.655486 TGATGCCTTTGAAATGCAACTG 58.345 40.909 11.67 0.00 38.69 3.16
85 86 4.546829 ATGATGCCTTTGAAATGCAACT 57.453 36.364 11.67 0.00 38.69 3.16
86 87 4.933400 AGAATGATGCCTTTGAAATGCAAC 59.067 37.500 11.67 9.77 38.69 4.17
87 88 5.155278 AGAATGATGCCTTTGAAATGCAA 57.845 34.783 11.67 0.00 38.69 4.08
88 89 4.811969 AGAATGATGCCTTTGAAATGCA 57.188 36.364 10.16 10.16 39.68 3.96
89 90 4.933400 ACAAGAATGATGCCTTTGAAATGC 59.067 37.500 0.00 0.00 0.00 3.56
90 91 6.395629 AGACAAGAATGATGCCTTTGAAATG 58.604 36.000 0.00 0.00 0.00 2.32
91 92 6.350780 GGAGACAAGAATGATGCCTTTGAAAT 60.351 38.462 0.00 0.00 0.00 2.17
92 93 5.047802 GGAGACAAGAATGATGCCTTTGAAA 60.048 40.000 0.00 0.00 0.00 2.69
93 94 4.460382 GGAGACAAGAATGATGCCTTTGAA 59.540 41.667 0.00 0.00 0.00 2.69
94 95 4.012374 GGAGACAAGAATGATGCCTTTGA 58.988 43.478 0.00 0.00 0.00 2.69
95 96 3.760151 TGGAGACAAGAATGATGCCTTTG 59.240 43.478 0.00 0.00 37.44 2.77
96 97 4.038271 TGGAGACAAGAATGATGCCTTT 57.962 40.909 0.00 0.00 37.44 3.11
97 98 3.726557 TGGAGACAAGAATGATGCCTT 57.273 42.857 0.00 0.00 37.44 4.35
110 111 0.394216 CGCATTCCCCATTGGAGACA 60.394 55.000 3.62 0.00 46.24 3.41
111 112 0.107214 TCGCATTCCCCATTGGAGAC 60.107 55.000 3.62 0.00 46.24 3.36
112 113 0.181114 CTCGCATTCCCCATTGGAGA 59.819 55.000 3.62 0.00 46.24 3.71
113 114 1.450531 GCTCGCATTCCCCATTGGAG 61.451 60.000 3.62 0.00 46.24 3.86
114 115 1.453745 GCTCGCATTCCCCATTGGA 60.454 57.895 3.62 0.00 43.18 3.53
127 128 4.760840 TGACGACGCTCAGCTCGC 62.761 66.667 15.66 10.46 34.46 5.03
132 133 0.932123 CGGATGATGACGACGCTCAG 60.932 60.000 0.00 0.00 0.00 3.35
134 135 0.039978 ATCGGATGATGACGACGCTC 60.040 55.000 0.00 0.00 42.39 5.03
139 140 0.961753 CCTGGATCGGATGATGACGA 59.038 55.000 0.00 0.00 43.85 4.20
150 151 1.996786 GCATGTGGTTGCCTGGATCG 61.997 60.000 0.00 0.00 36.60 3.69
206 207 1.132500 ATGAAATCCTCGACTCCCCC 58.868 55.000 0.00 0.00 0.00 5.40
231 232 0.681733 TCGCTCTCTTGTTGAAGGCT 59.318 50.000 0.00 0.00 0.00 4.58
321 337 4.699522 GTGGCGGACACTGGGGTC 62.700 72.222 6.76 0.00 46.72 4.46
328 344 3.343421 GTTGGTCGTGGCGGACAC 61.343 66.667 3.20 3.20 46.78 3.67
350 745 1.213275 CATCACATGCTTTGCGGCA 59.787 52.632 0.00 0.00 46.63 5.69
360 755 1.337071 GCCATCCTCTTGCATCACATG 59.663 52.381 0.00 0.00 0.00 3.21
361 756 1.688772 GCCATCCTCTTGCATCACAT 58.311 50.000 0.00 0.00 0.00 3.21
362 757 0.394762 GGCCATCCTCTTGCATCACA 60.395 55.000 0.00 0.00 0.00 3.58
363 758 0.394762 TGGCCATCCTCTTGCATCAC 60.395 55.000 0.00 0.00 0.00 3.06
364 759 0.394762 GTGGCCATCCTCTTGCATCA 60.395 55.000 9.72 0.00 0.00 3.07
365 760 1.105759 GGTGGCCATCCTCTTGCATC 61.106 60.000 9.72 0.00 0.00 3.91
366 761 1.076485 GGTGGCCATCCTCTTGCAT 60.076 57.895 9.72 0.00 0.00 3.96
367 762 2.356278 GGTGGCCATCCTCTTGCA 59.644 61.111 9.72 0.00 0.00 4.08
368 763 2.048603 GTGGTGGCCATCCTCTTGC 61.049 63.158 15.03 0.00 35.28 4.01
369 764 0.962356 GTGTGGTGGCCATCCTCTTG 60.962 60.000 15.03 0.00 35.28 3.02
370 765 1.380302 GTGTGGTGGCCATCCTCTT 59.620 57.895 15.03 0.00 35.28 2.85
371 766 2.606587 GGTGTGGTGGCCATCCTCT 61.607 63.158 15.03 0.00 35.28 3.69
372 767 1.271840 TAGGTGTGGTGGCCATCCTC 61.272 60.000 15.03 15.27 39.75 3.71
373 768 1.229820 TAGGTGTGGTGGCCATCCT 60.230 57.895 15.03 15.89 41.11 3.24
374 769 1.224592 CTAGGTGTGGTGGCCATCC 59.775 63.158 15.03 15.16 35.28 3.51
375 770 1.224592 CCTAGGTGTGGTGGCCATC 59.775 63.158 9.72 9.78 35.28 3.51
376 771 2.308722 CCCTAGGTGTGGTGGCCAT 61.309 63.158 9.72 0.00 35.28 4.40
377 772 2.933287 CCCTAGGTGTGGTGGCCA 60.933 66.667 0.00 0.00 0.00 5.36
378 773 4.426313 GCCCTAGGTGTGGTGGCC 62.426 72.222 8.29 0.00 36.07 5.36
379 774 4.778143 CGCCCTAGGTGTGGTGGC 62.778 72.222 8.29 0.62 38.74 5.01
380 775 2.521958 CTTCGCCCTAGGTGTGGTGG 62.522 65.000 8.29 0.00 34.40 4.61
381 776 1.079127 CTTCGCCCTAGGTGTGGTG 60.079 63.158 8.29 0.00 34.40 4.17
382 777 2.291043 CCTTCGCCCTAGGTGTGGT 61.291 63.158 8.29 0.00 34.40 4.16
383 778 2.584608 CCTTCGCCCTAGGTGTGG 59.415 66.667 8.29 3.79 34.40 4.17
384 779 2.125106 GCCTTCGCCCTAGGTGTG 60.125 66.667 8.29 6.26 35.13 3.82
395 790 3.825611 CCCCATTTGCGGCCTTCG 61.826 66.667 0.00 0.00 42.76 3.79
396 791 1.758122 ATCCCCATTTGCGGCCTTC 60.758 57.895 0.00 0.00 0.00 3.46
397 792 2.059786 CATCCCCATTTGCGGCCTT 61.060 57.895 0.00 0.00 0.00 4.35
398 793 2.442643 CATCCCCATTTGCGGCCT 60.443 61.111 0.00 0.00 0.00 5.19
399 794 4.225703 GCATCCCCATTTGCGGCC 62.226 66.667 0.00 0.00 0.00 6.13
400 795 3.142820 GAGCATCCCCATTTGCGGC 62.143 63.158 0.00 0.00 43.61 6.53
401 796 3.122850 GAGCATCCCCATTTGCGG 58.877 61.111 0.00 0.00 43.61 5.69
419 814 0.521291 ATGCAACGATCCAAACACCG 59.479 50.000 0.00 0.00 0.00 4.94
421 816 1.465689 CCGATGCAACGATCCAAACAC 60.466 52.381 18.77 0.00 35.09 3.32
476 871 1.109920 TGGTCGGCTCTCATCTAGGC 61.110 60.000 0.00 0.00 36.24 3.93
479 874 0.755698 GGGTGGTCGGCTCTCATCTA 60.756 60.000 0.00 0.00 0.00 1.98
481 876 1.617947 AAGGGTGGTCGGCTCTCATC 61.618 60.000 0.00 0.00 0.00 2.92
483 878 2.203788 AAGGGTGGTCGGCTCTCA 60.204 61.111 0.00 0.00 0.00 3.27
543 938 2.885861 CTCCACCTCCTTCGTCGG 59.114 66.667 0.00 0.00 0.00 4.79
547 942 3.787001 GGGGCTCCACCTCCTTCG 61.787 72.222 0.00 0.00 39.10 3.79
586 981 1.952635 AACGTCGGGCGAAGTTCAC 60.953 57.895 9.82 0.00 41.54 3.18
587 982 1.952133 CAACGTCGGGCGAAGTTCA 60.952 57.895 9.82 0.00 42.96 3.18
645 1040 2.669569 TGTCTCCGCTGCCTTTGC 60.670 61.111 0.00 0.00 38.26 3.68
647 1042 2.357517 CGTGTCTCCGCTGCCTTT 60.358 61.111 0.00 0.00 0.00 3.11
653 1048 1.103803 ATGTATGACGTGTCTCCGCT 58.896 50.000 0.00 0.00 0.00 5.52
658 1053 6.312918 GGTACAATGAAATGTATGACGTGTCT 59.687 38.462 0.00 0.00 38.03 3.41
667 1062 9.162764 GCCTTATATCGGTACAATGAAATGTAT 57.837 33.333 0.00 0.00 38.03 2.29
672 1067 5.931294 TGGCCTTATATCGGTACAATGAAA 58.069 37.500 3.32 0.00 0.00 2.69
673 1068 5.554437 TGGCCTTATATCGGTACAATGAA 57.446 39.130 3.32 0.00 0.00 2.57
678 1073 3.322828 GGAGTTGGCCTTATATCGGTACA 59.677 47.826 3.32 0.00 0.00 2.90
680 1075 3.322828 GTGGAGTTGGCCTTATATCGGTA 59.677 47.826 3.32 0.00 0.00 4.02
683 1078 2.767505 GGTGGAGTTGGCCTTATATCG 58.232 52.381 3.32 0.00 0.00 2.92
706 1185 2.978824 CGAACAGGATGGGGTCGT 59.021 61.111 0.00 0.00 43.62 4.34
803 1341 1.001393 GGGGATGGGTCGAAAGCAA 60.001 57.895 0.00 0.00 0.00 3.91
804 1342 2.674754 GGGGATGGGTCGAAAGCA 59.325 61.111 0.00 0.00 0.00 3.91
836 1374 1.102222 CCGTTTCACCCCAAAACCGA 61.102 55.000 0.00 0.00 33.93 4.69
986 1535 3.585247 CCATGGATGGGGGAGAGG 58.415 66.667 5.56 0.00 44.31 3.69
996 1545 3.080765 TGGGCGTCGACCATGGAT 61.081 61.111 18.16 1.98 34.69 3.41
1004 1553 4.077184 AATTCGGCTGGGCGTCGA 62.077 61.111 15.54 0.96 0.00 4.20
1201 1759 1.522355 CCTCCATCGCATCGCACTT 60.522 57.895 0.00 0.00 0.00 3.16
1204 1762 4.916293 GGCCTCCATCGCATCGCA 62.916 66.667 0.00 0.00 0.00 5.10
1258 1816 1.717728 CGTGCGCTTTGTTGACGAC 60.718 57.895 9.73 0.00 31.71 4.34
1464 2067 2.879462 GGTGTAGACGGCGCGAAG 60.879 66.667 12.10 4.68 0.00 3.79
1743 2556 1.383943 ATCGGGGACATACTGGGCA 60.384 57.895 0.00 0.00 0.00 5.36
1752 2565 2.367202 GGCCTCTTCATCGGGGACA 61.367 63.158 0.00 0.00 0.00 4.02
1783 2596 1.201647 CGAGTCACCATGGTCGTAGTT 59.798 52.381 16.53 0.00 0.00 2.24
2283 3105 6.434028 AGTGAACATGCAAACATATACAAGGT 59.566 34.615 0.00 0.00 33.67 3.50
2340 3164 1.260544 GCCTTGAATGCCTCCAAAGT 58.739 50.000 0.00 0.00 0.00 2.66
2363 3188 3.225104 AGTGAATGGCTTGTCATTGTGT 58.775 40.909 5.11 0.00 37.47 3.72
2445 3270 3.744660 TCAAGCCTCTCTTCCTTTGAAC 58.255 45.455 0.00 0.00 31.27 3.18
2463 3288 1.503818 GCGAACTTGGCCGTCTTCAA 61.504 55.000 0.00 0.00 0.00 2.69
2578 3403 1.286501 CATCATGCCATGCAAAGTGC 58.713 50.000 0.00 0.00 43.62 4.40
2734 3559 3.737172 CGAGTTGCCTTTGCCGGG 61.737 66.667 2.18 0.00 36.33 5.73
2735 3560 2.668212 TCGAGTTGCCTTTGCCGG 60.668 61.111 0.00 0.00 36.33 6.13
2736 3561 1.577328 ATGTCGAGTTGCCTTTGCCG 61.577 55.000 0.00 0.00 36.33 5.69
2737 3562 0.109597 CATGTCGAGTTGCCTTTGCC 60.110 55.000 0.00 0.00 36.33 4.52
2738 3563 0.109597 CCATGTCGAGTTGCCTTTGC 60.110 55.000 0.00 0.00 38.26 3.68
2739 3564 1.466167 CTCCATGTCGAGTTGCCTTTG 59.534 52.381 0.00 0.00 0.00 2.77
2740 3565 1.611673 CCTCCATGTCGAGTTGCCTTT 60.612 52.381 0.00 0.00 0.00 3.11
2741 3566 0.036010 CCTCCATGTCGAGTTGCCTT 60.036 55.000 0.00 0.00 0.00 4.35
2742 3567 0.904865 TCCTCCATGTCGAGTTGCCT 60.905 55.000 0.00 0.00 0.00 4.75
2743 3568 0.460987 CTCCTCCATGTCGAGTTGCC 60.461 60.000 0.00 0.00 0.00 4.52
2744 3569 0.460987 CCTCCTCCATGTCGAGTTGC 60.461 60.000 0.00 0.00 0.00 4.17
2745 3570 0.460987 GCCTCCTCCATGTCGAGTTG 60.461 60.000 0.00 0.00 0.00 3.16
2750 3575 4.899239 GCCGCCTCCTCCATGTCG 62.899 72.222 0.00 0.00 0.00 4.35
2753 3578 4.559063 CTGGCCGCCTCCTCCATG 62.559 72.222 11.61 0.00 0.00 3.66
2769 3627 2.359230 GTCGAGCTGCCTTTGCCT 60.359 61.111 0.00 0.00 36.33 4.75
2802 3726 2.359230 GTCGAGCTGCCTTTGCCT 60.359 61.111 0.00 0.00 36.33 4.75
3186 4175 3.650950 AGCGGCCCCAGTTCATGT 61.651 61.111 0.00 0.00 0.00 3.21
3255 4256 2.503061 CCATCCTGTCCGGCTCTG 59.497 66.667 0.00 0.00 0.00 3.35
3256 4257 2.765807 CCCATCCTGTCCGGCTCT 60.766 66.667 0.00 0.00 0.00 4.09
3260 4263 3.280938 TTTGCCCCATCCTGTCCGG 62.281 63.158 0.00 0.00 0.00 5.14
3331 4334 1.493854 TAGGGCAATGGGGTCGTGTT 61.494 55.000 0.00 0.00 0.00 3.32
3417 4420 1.683917 TCAAAATGTTCAACACGGGGG 59.316 47.619 0.00 0.00 0.00 5.40
3418 4421 2.738135 GTCAAAATGTTCAACACGGGG 58.262 47.619 0.00 0.00 0.00 5.73
3419 4422 2.223386 ACGTCAAAATGTTCAACACGGG 60.223 45.455 0.00 0.00 0.00 5.28
3420 4423 3.033185 GACGTCAAAATGTTCAACACGG 58.967 45.455 11.55 0.00 0.00 4.94
3421 4424 3.033185 GGACGTCAAAATGTTCAACACG 58.967 45.455 18.91 0.00 0.00 4.49
3422 4425 4.022464 TGGACGTCAAAATGTTCAACAC 57.978 40.909 18.91 0.00 26.28 3.32
3423 4426 4.703645 TTGGACGTCAAAATGTTCAACA 57.296 36.364 18.91 0.00 35.39 3.33
3424 4427 5.173131 GTGATTGGACGTCAAAATGTTCAAC 59.827 40.000 18.91 4.76 41.62 3.18
3448 4451 1.801771 TGATGCGTGGGTTTTCTTACG 59.198 47.619 0.00 0.00 39.37 3.18
3452 4455 1.812571 GTCATGATGCGTGGGTTTTCT 59.187 47.619 0.00 0.00 0.00 2.52
3463 4468 1.431488 ATGGCGTCGTGTCATGATGC 61.431 55.000 25.17 25.17 42.62 3.91
3486 4491 2.697761 CCGGTCGCCTCGAGAGAAA 61.698 63.158 15.71 0.00 41.32 2.52
3526 4531 1.132643 AGCTAAAGTGGTCTCGCTACG 59.867 52.381 0.00 0.00 33.44 3.51
3531 4536 0.716108 CGCAAGCTAAAGTGGTCTCG 59.284 55.000 0.00 0.00 0.00 4.04
3537 4542 1.225855 TCCACACGCAAGCTAAAGTG 58.774 50.000 12.09 12.09 45.62 3.16
3554 4559 2.826128 GTTTGGTTTCCTTCCTCCATCC 59.174 50.000 0.00 0.00 0.00 3.51
3583 4593 2.029844 GGCTCAAGACAGCGTGGTC 61.030 63.158 1.00 1.00 40.68 4.02
3674 4684 2.726850 AAAGCGAAAGAAACGGCCGC 62.727 55.000 28.58 9.52 45.39 6.53
3683 4693 1.597742 AGCAGAAGCAAAGCGAAAGA 58.402 45.000 0.00 0.00 45.49 2.52
3684 4694 2.314122 GAAGCAGAAGCAAAGCGAAAG 58.686 47.619 0.00 0.00 45.49 2.62
3713 4731 0.796491 CACACAAACACACACACGGC 60.796 55.000 0.00 0.00 0.00 5.68
3726 4744 1.005512 CCGTCCGATCCACACACAA 60.006 57.895 0.00 0.00 0.00 3.33
3729 4747 2.642254 GGTCCGTCCGATCCACACA 61.642 63.158 0.00 0.00 0.00 3.72
3730 4748 2.183555 GGTCCGTCCGATCCACAC 59.816 66.667 0.00 0.00 0.00 3.82
3732 4750 2.183555 GTGGTCCGTCCGATCCAC 59.816 66.667 13.87 13.87 42.40 4.02
3733 4751 3.445687 CGTGGTCCGTCCGATCCA 61.446 66.667 0.00 0.00 39.52 3.41
3735 4753 4.203076 CCCGTGGTCCGTCCGATC 62.203 72.222 0.00 0.00 39.52 3.69
3781 4799 3.536498 CTTTTGGGTCACGTGGCGC 62.536 63.158 28.18 28.18 0.00 6.53
3782 4800 2.637025 CTTTTGGGTCACGTGGCG 59.363 61.111 17.00 0.00 0.00 5.69
3783 4801 1.527380 TCCTTTTGGGTCACGTGGC 60.527 57.895 17.00 15.01 40.87 5.01
3784 4802 0.179029 AGTCCTTTTGGGTCACGTGG 60.179 55.000 17.00 0.00 40.87 4.94
3786 4804 0.108019 GGAGTCCTTTTGGGTCACGT 59.892 55.000 0.41 0.00 40.87 4.49
3788 4806 1.235281 GCGGAGTCCTTTTGGGTCAC 61.235 60.000 7.77 0.00 40.87 3.67
3789 4807 1.072505 GCGGAGTCCTTTTGGGTCA 59.927 57.895 7.77 0.00 40.87 4.02
3790 4808 2.033194 CGCGGAGTCCTTTTGGGTC 61.033 63.158 7.77 0.00 40.87 4.46
3791 4809 2.032071 CGCGGAGTCCTTTTGGGT 59.968 61.111 7.77 0.00 40.87 4.51
3793 4811 2.746277 CCCGCGGAGTCCTTTTGG 60.746 66.667 30.73 0.44 42.21 3.28
3795 4813 2.346365 GACCCGCGGAGTCCTTTT 59.654 61.111 30.73 0.00 0.00 2.27
3796 4814 4.065281 CGACCCGCGGAGTCCTTT 62.065 66.667 30.73 0.35 36.03 3.11
3809 4827 4.120331 GTGCCAATGCCAGCGACC 62.120 66.667 0.00 0.00 36.33 4.79
3810 4828 4.120331 GGTGCCAATGCCAGCGAC 62.120 66.667 0.00 0.00 36.33 5.19
3814 4832 2.995077 TAGGGGGTGCCAATGCCAG 61.995 63.158 0.00 0.00 36.33 4.85
3815 4833 2.943827 TAGGGGGTGCCAATGCCA 60.944 61.111 0.00 0.00 36.33 4.92
3816 4834 2.442087 GTAGGGGGTGCCAATGCC 60.442 66.667 0.00 0.00 36.33 4.40
3817 4835 1.453928 GAGTAGGGGGTGCCAATGC 60.454 63.158 0.00 0.00 38.26 3.56
3818 4836 1.227383 GGAGTAGGGGGTGCCAATG 59.773 63.158 0.00 0.00 0.00 2.82
3819 4837 0.345502 TAGGAGTAGGGGGTGCCAAT 59.654 55.000 0.00 0.00 0.00 3.16
3820 4838 0.619543 GTAGGAGTAGGGGGTGCCAA 60.620 60.000 0.00 0.00 0.00 4.52
3821 4839 1.002533 GTAGGAGTAGGGGGTGCCA 59.997 63.158 0.00 0.00 0.00 4.92
3822 4840 1.049289 CAGTAGGAGTAGGGGGTGCC 61.049 65.000 0.00 0.00 0.00 5.01
3823 4841 1.049289 CCAGTAGGAGTAGGGGGTGC 61.049 65.000 0.00 0.00 36.89 5.01
3824 4842 1.049289 GCCAGTAGGAGTAGGGGGTG 61.049 65.000 0.00 0.00 36.89 4.61
3825 4843 1.229626 AGCCAGTAGGAGTAGGGGGT 61.230 60.000 0.00 0.00 36.89 4.95
3826 4844 0.760945 CAGCCAGTAGGAGTAGGGGG 60.761 65.000 0.00 0.00 36.89 5.40
3827 4845 0.760945 CCAGCCAGTAGGAGTAGGGG 60.761 65.000 0.00 0.00 36.89 4.79
3828 4846 1.403687 GCCAGCCAGTAGGAGTAGGG 61.404 65.000 0.00 0.00 36.89 3.53
3829 4847 0.397816 AGCCAGCCAGTAGGAGTAGG 60.398 60.000 0.00 0.00 36.89 3.18
3830 4848 1.036707 GAGCCAGCCAGTAGGAGTAG 58.963 60.000 0.00 0.00 36.89 2.57
3831 4849 0.631753 AGAGCCAGCCAGTAGGAGTA 59.368 55.000 0.00 0.00 36.89 2.59
3832 4850 0.631753 TAGAGCCAGCCAGTAGGAGT 59.368 55.000 0.00 0.00 36.89 3.85
3833 4851 1.036707 GTAGAGCCAGCCAGTAGGAG 58.963 60.000 0.00 0.00 36.89 3.69
3834 4852 0.397254 GGTAGAGCCAGCCAGTAGGA 60.397 60.000 0.00 0.00 35.19 2.94
3971 4993 3.461773 CTCGGTGGTGGCGATCCT 61.462 66.667 0.00 0.00 0.00 3.24
4000 5022 1.730451 GAGAGAGAGCTACGGGTGGC 61.730 65.000 0.00 0.00 37.33 5.01
4001 5023 1.104577 GGAGAGAGAGCTACGGGTGG 61.105 65.000 0.00 0.00 0.00 4.61
4022 5045 2.663423 GATCTGCTGGAGCTGGAGGC 62.663 65.000 0.00 0.00 42.66 4.70
4023 5046 1.335882 TGATCTGCTGGAGCTGGAGG 61.336 60.000 0.00 0.00 42.66 4.30
4024 5047 0.105224 CTGATCTGCTGGAGCTGGAG 59.895 60.000 0.00 0.00 42.66 3.86
4025 5048 1.969200 GCTGATCTGCTGGAGCTGGA 61.969 60.000 16.60 2.29 42.66 3.86
4026 5049 1.524165 GCTGATCTGCTGGAGCTGG 60.524 63.158 16.60 0.00 42.66 4.85
4027 5050 0.812014 CTGCTGATCTGCTGGAGCTG 60.812 60.000 23.02 9.10 42.66 4.24
4028 5051 1.523046 CTGCTGATCTGCTGGAGCT 59.477 57.895 23.02 0.00 42.66 4.09
4029 5052 4.128139 CTGCTGATCTGCTGGAGC 57.872 61.111 23.02 9.53 42.50 4.70
4030 5053 0.812014 CTGCTGCTGATCTGCTGGAG 60.812 60.000 27.76 27.76 41.76 3.86
4031 5054 1.221021 CTGCTGCTGATCTGCTGGA 59.779 57.895 25.44 22.92 39.95 3.86
4032 5055 1.820056 CCTGCTGCTGATCTGCTGG 60.820 63.158 25.44 18.38 46.37 4.85
4115 5149 4.506255 GTGGAATGGAGGGGGCGG 62.506 72.222 0.00 0.00 0.00 6.13
4121 5155 2.297895 TGGGTCGGTGGAATGGAGG 61.298 63.158 0.00 0.00 0.00 4.30
4123 5157 2.598787 GGTGGGTCGGTGGAATGGA 61.599 63.158 0.00 0.00 0.00 3.41
4125 5159 2.045340 GGGTGGGTCGGTGGAATG 60.045 66.667 0.00 0.00 0.00 2.67
4131 5165 2.226149 TTTTTGGTGGGTGGGTCGGT 62.226 55.000 0.00 0.00 0.00 4.69
4132 5166 1.455959 TTTTTGGTGGGTGGGTCGG 60.456 57.895 0.00 0.00 0.00 4.79
4133 5167 0.466555 TCTTTTTGGTGGGTGGGTCG 60.467 55.000 0.00 0.00 0.00 4.79
4134 5168 1.328279 CTCTTTTTGGTGGGTGGGTC 58.672 55.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.