Multiple sequence alignment - TraesCS6D01G290700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G290700 chr6D 100.000 8353 0 0 1 8353 401175592 401183944 0.000000e+00 15426.0
1 TraesCS6D01G290700 chr6D 81.931 321 38 14 4 305 471006421 471006102 3.870000e-63 254.0
2 TraesCS6D01G290700 chr6A 94.683 6131 225 37 798 6886 547733085 547739156 0.000000e+00 9422.0
3 TraesCS6D01G290700 chr6A 88.571 1085 53 23 6892 7945 547739270 547740314 0.000000e+00 1251.0
4 TraesCS6D01G290700 chr6A 91.262 103 9 0 638 740 547729381 547729483 3.140000e-29 141.0
5 TraesCS6D01G290700 chr6A 90.196 102 8 2 8181 8282 547740334 547740433 1.890000e-26 132.0
6 TraesCS6D01G290700 chr6A 97.436 39 1 0 6308 6346 547738523 547738561 5.410000e-07 67.6
7 TraesCS6D01G290700 chr6A 97.297 37 1 0 6247 6283 547738588 547738624 7.000000e-06 63.9
8 TraesCS6D01G290700 chr6B 95.263 5024 174 35 785 5778 601126294 601131283 0.000000e+00 7901.0
9 TraesCS6D01G290700 chr6B 92.356 1439 64 15 6249 7660 601131787 601133206 0.000000e+00 2006.0
10 TraesCS6D01G290700 chr6B 95.413 545 18 2 5808 6346 601131278 601131821 0.000000e+00 861.0
11 TraesCS6D01G290700 chr6B 90.625 576 39 9 7773 8338 601136400 601136970 0.000000e+00 750.0
12 TraesCS6D01G290700 chr6B 89.615 260 18 6 7715 7968 601136143 601136399 1.050000e-83 322.0
13 TraesCS6D01G290700 chr6B 91.503 153 3 3 640 784 601123927 601124077 1.420000e-47 202.0
14 TraesCS6D01G290700 chr6B 90.426 94 8 1 324 416 601121424 601121517 1.140000e-23 122.0
15 TraesCS6D01G290700 chr6B 88.710 62 6 1 324 384 601121776 601121837 3.230000e-09 75.0
16 TraesCS6D01G290700 chr6B 97.561 41 1 0 6308 6348 601131720 601131760 4.180000e-08 71.3
17 TraesCS6D01G290700 chr3A 78.396 611 88 28 1600 2179 727341412 727340815 2.870000e-94 357.0
18 TraesCS6D01G290700 chr3A 84.151 265 33 9 20 276 13336386 13336123 1.800000e-61 248.0
19 TraesCS6D01G290700 chr1B 84.858 317 32 10 4 305 328153561 328153246 1.050000e-78 305.0
20 TraesCS6D01G290700 chr2B 84.326 319 34 11 1 305 384346503 384346187 1.760000e-76 298.0
21 TraesCS6D01G290700 chr2B 92.157 51 4 0 541 591 660128384 660128334 1.160000e-08 73.1
22 TraesCS6D01G290700 chr2B 91.489 47 4 0 6610 6656 59217980 59218026 1.950000e-06 65.8
23 TraesCS6D01G290700 chr3B 84.912 285 26 15 6 276 659307398 659307679 1.070000e-68 272.0
24 TraesCS6D01G290700 chr3B 94.444 36 1 1 542 576 708410629 708410664 4.000000e-03 54.7
25 TraesCS6D01G290700 chr4D 82.704 318 41 5 1 305 499411004 499411320 3.840000e-68 270.0
26 TraesCS6D01G290700 chr3D 82.769 325 35 11 1 305 3231821 3231498 3.840000e-68 270.0
27 TraesCS6D01G290700 chr3D 83.566 286 27 15 8 276 498486267 498486549 5.010000e-62 250.0
28 TraesCS6D01G290700 chr2D 81.646 316 43 12 1 305 45688980 45688669 1.800000e-61 248.0
29 TraesCS6D01G290700 chr2D 88.889 117 13 0 1388 1504 284221480 284221364 2.430000e-30 145.0
30 TraesCS6D01G290700 chr2D 80.795 151 12 4 7624 7774 585499078 585499211 1.480000e-17 102.0
31 TraesCS6D01G290700 chr2D 97.297 37 1 0 6612 6648 590238940 590238976 7.000000e-06 63.9
32 TraesCS6D01G290700 chr1D 82.456 114 16 3 8085 8198 9334022 9333913 6.900000e-16 97.1
33 TraesCS6D01G290700 chr2A 89.474 57 5 1 8141 8197 74143723 74143668 4.180000e-08 71.3
34 TraesCS6D01G290700 chr7B 86.885 61 5 3 6591 6648 537165950 537165890 1.950000e-06 65.8
35 TraesCS6D01G290700 chr7A 86.885 61 5 3 6591 6648 579340213 579340273 1.950000e-06 65.8
36 TraesCS6D01G290700 chr5D 95.122 41 2 0 6608 6648 381914446 381914486 1.950000e-06 65.8
37 TraesCS6D01G290700 chr5D 97.297 37 1 0 6612 6648 56125677 56125641 7.000000e-06 63.9
38 TraesCS6D01G290700 chr4B 95.000 40 2 0 6612 6651 70256670 70256631 7.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G290700 chr6D 401175592 401183944 8352 False 15426.000000 15426 100.000000 1 8353 1 chr6D.!!$F1 8352
1 TraesCS6D01G290700 chr6A 547729381 547740433 11052 False 1846.250000 9422 93.240833 638 8282 6 chr6A.!!$F1 7644
2 TraesCS6D01G290700 chr6B 601121424 601136970 15546 False 1367.811111 7901 92.385778 324 8338 9 chr6B.!!$F1 8014
3 TraesCS6D01G290700 chr3A 727340815 727341412 597 True 357.000000 357 78.396000 1600 2179 1 chr3A.!!$R2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.468648 GTGGGGTATGTCTACAGCCC 59.531 60.000 14.00 14.00 41.43 5.19 F
1161 7908 0.381089 CTTCTACGGCACTAGGGTCG 59.619 60.000 19.29 19.29 0.00 4.79 F
2154 8949 0.476338 TGCTTGGGACAGGTTAGCAA 59.524 50.000 0.00 0.00 42.39 3.91 F
2377 9173 0.833409 TCTCTCTGCTTGGACTGGCA 60.833 55.000 0.00 0.00 36.94 4.92 F
2383 9179 1.342174 CTGCTTGGACTGGCACAATTT 59.658 47.619 0.00 0.00 38.70 1.82 F
3903 10718 0.179150 AGACATCTTCTGCTCGCGTC 60.179 55.000 5.77 0.00 31.12 5.19 F
4781 11605 0.108186 TGCATAGCCACGTCTCAAGG 60.108 55.000 0.00 0.00 0.00 3.61 F
5410 12235 0.036164 ACCTGCATGCGGTCTGTTAA 59.964 50.000 24.56 0.00 0.00 2.01 F
6532 13432 0.319728 CATAGCCCATCAGAGACGGG 59.680 60.000 0.00 0.00 43.42 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 8064 0.110192 CTGAGCGAAAACCGAAAGCC 60.110 55.000 0.00 0.0 41.76 4.35 R
2455 9252 2.754552 GCCTGCACTTTCCACAATCATA 59.245 45.455 0.00 0.0 0.00 2.15 R
3235 10034 1.747745 GGTACAATGCACGGGGGAC 60.748 63.158 0.00 0.0 0.00 4.46 R
3297 10096 2.297033 GCACCAACCAGAATGTGTCAAT 59.703 45.455 0.00 0.0 0.00 2.57 R
4306 11121 2.730550 AAGAAGGCAAAATTCGGCTG 57.269 45.000 4.87 0.0 39.56 4.85 R
5045 11869 1.092921 GGAAGTCGTGTTGTGTGGCA 61.093 55.000 0.00 0.0 0.00 4.92 R
6532 13432 0.828022 TACATGTGATCCCCGTGACC 59.172 55.000 9.11 0.0 0.00 4.02 R
6857 13762 1.172812 GGGACAGCACACCAAACCTC 61.173 60.000 0.00 0.0 0.00 3.85 R
7961 18124 0.531200 AGTGCGTGTCTAGGTTAGCC 59.469 55.000 0.00 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.940994 TCGTGAGATCAACCCCAAAA 57.059 45.000 0.00 0.00 33.31 2.44
23 24 3.216187 TCGTGAGATCAACCCCAAAAA 57.784 42.857 0.00 0.00 33.31 1.94
81 82 8.887264 TTTGATAACTTTTATGTGGGGTATGT 57.113 30.769 0.00 0.00 0.00 2.29
82 83 8.514330 TTGATAACTTTTATGTGGGGTATGTC 57.486 34.615 0.00 0.00 0.00 3.06
83 84 7.867921 TGATAACTTTTATGTGGGGTATGTCT 58.132 34.615 0.00 0.00 0.00 3.41
84 85 8.994500 TGATAACTTTTATGTGGGGTATGTCTA 58.006 33.333 0.00 0.00 0.00 2.59
85 86 9.269453 GATAACTTTTATGTGGGGTATGTCTAC 57.731 37.037 0.00 0.00 0.00 2.59
86 87 6.630203 ACTTTTATGTGGGGTATGTCTACA 57.370 37.500 0.00 0.00 0.00 2.74
87 88 6.650120 ACTTTTATGTGGGGTATGTCTACAG 58.350 40.000 0.00 0.00 0.00 2.74
88 89 4.682778 TTATGTGGGGTATGTCTACAGC 57.317 45.455 0.00 0.00 0.00 4.40
89 90 1.200519 TGTGGGGTATGTCTACAGCC 58.799 55.000 0.00 0.00 0.00 4.85
90 91 0.468648 GTGGGGTATGTCTACAGCCC 59.531 60.000 14.00 14.00 41.43 5.19
92 93 2.143129 GGGTATGTCTACAGCCCCC 58.857 63.158 12.18 6.54 38.37 5.40
93 94 0.693092 GGGTATGTCTACAGCCCCCA 60.693 60.000 12.18 0.00 38.37 4.96
94 95 1.209621 GGTATGTCTACAGCCCCCAA 58.790 55.000 0.00 0.00 0.00 4.12
95 96 1.562475 GGTATGTCTACAGCCCCCAAA 59.438 52.381 0.00 0.00 0.00 3.28
96 97 2.025699 GGTATGTCTACAGCCCCCAAAA 60.026 50.000 0.00 0.00 0.00 2.44
97 98 2.990740 ATGTCTACAGCCCCCAAAAA 57.009 45.000 0.00 0.00 0.00 1.94
119 120 6.882610 AAATCAGCTCAAACTCAATGTACA 57.117 33.333 0.00 0.00 0.00 2.90
120 121 7.458409 AAATCAGCTCAAACTCAATGTACAT 57.542 32.000 1.41 1.41 0.00 2.29
121 122 7.458409 AATCAGCTCAAACTCAATGTACATT 57.542 32.000 15.47 15.47 0.00 2.71
122 123 6.882610 TCAGCTCAAACTCAATGTACATTT 57.117 33.333 18.50 1.75 0.00 2.32
123 124 7.977789 TCAGCTCAAACTCAATGTACATTTA 57.022 32.000 18.50 10.20 0.00 1.40
124 125 8.032952 TCAGCTCAAACTCAATGTACATTTAG 57.967 34.615 22.53 22.53 0.00 1.85
125 126 7.877612 TCAGCTCAAACTCAATGTACATTTAGA 59.122 33.333 28.30 18.47 0.00 2.10
126 127 8.173775 CAGCTCAAACTCAATGTACATTTAGAG 58.826 37.037 28.30 26.08 31.15 2.43
127 128 8.097038 AGCTCAAACTCAATGTACATTTAGAGA 58.903 33.333 29.07 22.10 30.12 3.10
128 129 8.887717 GCTCAAACTCAATGTACATTTAGAGAT 58.112 33.333 29.07 20.47 30.12 2.75
160 161 7.470289 AGACAAATCGAATGTGAATAGTAGC 57.530 36.000 11.46 0.00 0.00 3.58
161 162 7.041721 AGACAAATCGAATGTGAATAGTAGCA 58.958 34.615 11.46 0.00 0.00 3.49
162 163 7.549134 AGACAAATCGAATGTGAATAGTAGCAA 59.451 33.333 11.46 0.00 0.00 3.91
163 164 7.464358 ACAAATCGAATGTGAATAGTAGCAAC 58.536 34.615 6.44 0.00 0.00 4.17
164 165 7.334421 ACAAATCGAATGTGAATAGTAGCAACT 59.666 33.333 6.44 0.00 39.91 3.16
165 166 7.849804 AATCGAATGTGAATAGTAGCAACTT 57.150 32.000 0.00 0.00 37.15 2.66
166 167 7.849804 ATCGAATGTGAATAGTAGCAACTTT 57.150 32.000 0.00 0.00 37.15 2.66
167 168 7.667043 TCGAATGTGAATAGTAGCAACTTTT 57.333 32.000 0.00 0.00 37.15 2.27
168 169 7.518161 TCGAATGTGAATAGTAGCAACTTTTG 58.482 34.615 0.00 0.00 37.15 2.44
169 170 6.742718 CGAATGTGAATAGTAGCAACTTTTGG 59.257 38.462 0.00 0.00 37.15 3.28
170 171 7.524717 AATGTGAATAGTAGCAACTTTTGGT 57.475 32.000 0.00 0.00 44.64 3.67
171 172 6.312399 TGTGAATAGTAGCAACTTTTGGTG 57.688 37.500 0.91 0.00 42.14 4.17
172 173 6.058833 TGTGAATAGTAGCAACTTTTGGTGA 58.941 36.000 0.91 0.00 40.19 4.02
173 174 6.544197 TGTGAATAGTAGCAACTTTTGGTGAA 59.456 34.615 0.91 0.00 40.19 3.18
174 175 7.230510 TGTGAATAGTAGCAACTTTTGGTGAAT 59.769 33.333 0.91 0.00 40.19 2.57
175 176 8.726988 GTGAATAGTAGCAACTTTTGGTGAATA 58.273 33.333 0.91 0.00 40.19 1.75
176 177 8.946085 TGAATAGTAGCAACTTTTGGTGAATAG 58.054 33.333 0.91 0.00 40.19 1.73
177 178 8.863872 AATAGTAGCAACTTTTGGTGAATAGT 57.136 30.769 0.91 0.00 40.19 2.12
178 179 9.953565 AATAGTAGCAACTTTTGGTGAATAGTA 57.046 29.630 0.91 0.00 40.19 1.82
179 180 7.668525 AGTAGCAACTTTTGGTGAATAGTAC 57.331 36.000 0.91 0.00 40.19 2.73
180 181 7.450903 AGTAGCAACTTTTGGTGAATAGTACT 58.549 34.615 0.00 0.00 40.19 2.73
181 182 7.937394 AGTAGCAACTTTTGGTGAATAGTACTT 59.063 33.333 0.00 0.00 40.19 2.24
182 183 7.582667 AGCAACTTTTGGTGAATAGTACTTT 57.417 32.000 0.00 0.00 40.19 2.66
183 184 8.685838 AGCAACTTTTGGTGAATAGTACTTTA 57.314 30.769 0.00 0.00 40.19 1.85
184 185 9.127277 AGCAACTTTTGGTGAATAGTACTTTAA 57.873 29.630 0.00 0.00 40.19 1.52
185 186 9.177304 GCAACTTTTGGTGAATAGTACTTTAAC 57.823 33.333 0.00 0.00 40.19 2.01
188 189 9.623000 ACTTTTGGTGAATAGTACTTTAACACT 57.377 29.630 0.00 0.00 0.00 3.55
252 253 7.898014 ATTAGGAGTTGAAACTTTTTGAGGT 57.102 32.000 0.00 0.00 39.88 3.85
253 254 7.712204 TTAGGAGTTGAAACTTTTTGAGGTT 57.288 32.000 0.00 0.00 39.88 3.50
254 255 5.965922 AGGAGTTGAAACTTTTTGAGGTTG 58.034 37.500 0.00 0.00 39.88 3.77
255 256 4.566759 GGAGTTGAAACTTTTTGAGGTTGC 59.433 41.667 0.00 0.00 39.88 4.17
256 257 5.146010 AGTTGAAACTTTTTGAGGTTGCA 57.854 34.783 0.00 0.00 34.74 4.08
257 258 4.929211 AGTTGAAACTTTTTGAGGTTGCAC 59.071 37.500 0.00 0.00 34.74 4.57
258 259 4.527509 TGAAACTTTTTGAGGTTGCACA 57.472 36.364 0.00 0.00 34.74 4.57
259 260 5.083533 TGAAACTTTTTGAGGTTGCACAT 57.916 34.783 0.00 0.00 34.74 3.21
260 261 5.108517 TGAAACTTTTTGAGGTTGCACATC 58.891 37.500 0.00 0.00 34.74 3.06
261 262 4.734398 AACTTTTTGAGGTTGCACATCA 57.266 36.364 0.00 0.00 37.10 3.07
262 263 4.734398 ACTTTTTGAGGTTGCACATCAA 57.266 36.364 10.79 10.79 45.61 2.57
267 268 4.669206 TTGAGGTTGCACATCAAACATT 57.331 36.364 11.95 0.00 44.53 2.71
268 269 3.979948 TGAGGTTGCACATCAAACATTG 58.020 40.909 0.00 0.00 44.77 2.82
269 270 3.635836 TGAGGTTGCACATCAAACATTGA 59.364 39.130 0.00 0.00 44.77 2.57
285 286 9.926158 TCAAACATTGATGTGTGCTTATAATTT 57.074 25.926 9.03 0.00 43.98 1.82
308 309 6.660887 TTTTTGAGAATGTTTGAACAAGCC 57.339 33.333 0.10 0.00 43.03 4.35
309 310 4.320608 TTGAGAATGTTTGAACAAGCCC 57.679 40.909 0.10 0.00 43.03 5.19
310 311 2.627699 TGAGAATGTTTGAACAAGCCCC 59.372 45.455 0.10 0.00 43.03 5.80
311 312 1.970640 AGAATGTTTGAACAAGCCCCC 59.029 47.619 0.10 0.00 43.03 5.40
342 343 7.012044 CCCCCAGTAGTTTTGAAGATATTAACG 59.988 40.741 0.00 0.00 0.00 3.18
343 344 7.407337 CCCAGTAGTTTTGAAGATATTAACGC 58.593 38.462 0.00 0.00 0.00 4.84
345 346 8.447833 CCAGTAGTTTTGAAGATATTAACGCAA 58.552 33.333 0.00 0.00 0.00 4.85
443 458 1.668419 GCTTGTCGCCATTGTAGGAT 58.332 50.000 0.00 0.00 0.00 3.24
446 461 2.890808 TGTCGCCATTGTAGGATCTC 57.109 50.000 0.00 0.00 0.00 2.75
447 462 1.067060 TGTCGCCATTGTAGGATCTCG 59.933 52.381 0.00 0.00 0.00 4.04
451 1158 2.760374 GCCATTGTAGGATCTCGGAAG 58.240 52.381 0.00 0.00 0.00 3.46
479 1186 9.802039 TGGAAATAACCTTTACAAAGTGTATCT 57.198 29.630 1.32 0.00 32.20 1.98
494 1501 8.792633 CAAAGTGTATCTTTTCTTTGATGGGTA 58.207 33.333 9.86 0.00 45.15 3.69
500 1507 9.899226 GTATCTTTTCTTTGATGGGTATAATGC 57.101 33.333 0.00 0.00 0.00 3.56
501 1508 7.026631 TCTTTTCTTTGATGGGTATAATGCG 57.973 36.000 0.00 0.00 0.00 4.73
502 1509 6.601613 TCTTTTCTTTGATGGGTATAATGCGT 59.398 34.615 0.00 0.00 0.00 5.24
503 1510 7.771361 TCTTTTCTTTGATGGGTATAATGCGTA 59.229 33.333 0.00 0.00 0.00 4.42
504 1511 7.490962 TTTCTTTGATGGGTATAATGCGTAG 57.509 36.000 0.00 0.00 0.00 3.51
505 1512 6.169557 TCTTTGATGGGTATAATGCGTAGT 57.830 37.500 0.00 0.00 0.00 2.73
506 1513 7.292713 TCTTTGATGGGTATAATGCGTAGTA 57.707 36.000 0.00 0.00 0.00 1.82
507 1514 7.149973 TCTTTGATGGGTATAATGCGTAGTAC 58.850 38.462 0.00 0.00 0.00 2.73
508 1515 6.659745 TTGATGGGTATAATGCGTAGTACT 57.340 37.500 0.00 0.00 0.00 2.73
509 1516 6.020971 TGATGGGTATAATGCGTAGTACTG 57.979 41.667 5.39 0.00 0.00 2.74
517 1524 8.728833 GGTATAATGCGTAGTACTGTATCTCTT 58.271 37.037 5.39 0.00 0.00 2.85
545 1552 9.983024 ACTAGTGATTACCTCTATATAGCACAT 57.017 33.333 4.75 0.31 0.00 3.21
549 1556 7.911205 GTGATTACCTCTATATAGCACATCGTC 59.089 40.741 4.75 0.00 0.00 4.20
551 1558 4.576879 ACCTCTATATAGCACATCGTCGA 58.423 43.478 4.75 0.00 0.00 4.20
571 1578 6.985188 TCGAAAGACCTGAAATAAATCCAG 57.015 37.500 0.00 0.00 33.31 3.86
579 1586 8.037166 AGACCTGAAATAAATCCAGAAAATTGC 58.963 33.333 0.00 0.00 0.00 3.56
586 1593 1.243902 TCCAGAAAATTGCGACCACC 58.756 50.000 0.00 0.00 0.00 4.61
587 1594 0.958091 CCAGAAAATTGCGACCACCA 59.042 50.000 0.00 0.00 0.00 4.17
588 1595 1.068333 CCAGAAAATTGCGACCACCAG 60.068 52.381 0.00 0.00 0.00 4.00
589 1596 1.608590 CAGAAAATTGCGACCACCAGT 59.391 47.619 0.00 0.00 0.00 4.00
590 1597 1.608590 AGAAAATTGCGACCACCAGTG 59.391 47.619 0.00 0.00 0.00 3.66
591 1598 1.606668 GAAAATTGCGACCACCAGTGA 59.393 47.619 0.00 0.00 0.00 3.41
592 1599 0.951558 AAATTGCGACCACCAGTGAC 59.048 50.000 0.00 0.00 0.00 3.67
593 1600 0.889186 AATTGCGACCACCAGTGACC 60.889 55.000 0.00 0.00 0.00 4.02
594 1601 2.050836 ATTGCGACCACCAGTGACCA 62.051 55.000 0.00 0.00 0.00 4.02
613 1620 5.363868 TGACCAGTATAGGACTTGAATCTGG 59.636 44.000 0.00 0.00 44.39 3.86
614 1621 5.281314 ACCAGTATAGGACTTGAATCTGGT 58.719 41.667 7.56 7.56 46.04 4.00
615 1622 5.848406 CCAGTATAGGACTTGAATCTGGTC 58.152 45.833 0.00 0.00 35.64 4.02
616 1623 5.508153 CCAGTATAGGACTTGAATCTGGTCG 60.508 48.000 0.00 0.00 35.64 4.79
617 1624 5.299531 CAGTATAGGACTTGAATCTGGTCGA 59.700 44.000 0.00 0.00 35.64 4.20
618 1625 6.015856 CAGTATAGGACTTGAATCTGGTCGAT 60.016 42.308 0.00 0.00 35.64 3.59
619 1626 5.878406 ATAGGACTTGAATCTGGTCGATT 57.122 39.130 0.00 0.00 44.87 3.34
620 1627 3.866651 AGGACTTGAATCTGGTCGATTG 58.133 45.455 0.00 0.00 42.31 2.67
621 1628 2.939103 GGACTTGAATCTGGTCGATTGG 59.061 50.000 0.00 0.00 42.31 3.16
622 1629 3.600388 GACTTGAATCTGGTCGATTGGT 58.400 45.455 0.00 0.00 42.31 3.67
623 1630 4.003648 GACTTGAATCTGGTCGATTGGTT 58.996 43.478 0.00 0.00 42.31 3.67
625 1632 4.455877 ACTTGAATCTGGTCGATTGGTTTC 59.544 41.667 0.00 0.00 42.31 2.78
627 1634 3.751175 TGAATCTGGTCGATTGGTTTCAC 59.249 43.478 0.00 0.00 42.31 3.18
628 1635 2.178912 TCTGGTCGATTGGTTTCACC 57.821 50.000 0.00 0.00 39.22 4.02
641 1648 1.602377 GTTTCACCACAAGGAAGGTCG 59.398 52.381 0.00 0.00 35.52 4.79
687 2892 1.876497 CTGTTCGTGGGCCCATTTGG 61.876 60.000 31.45 17.84 37.09 3.28
779 3926 3.609373 CGAGTTCGATAAGCCACGTAAAA 59.391 43.478 0.00 0.00 43.02 1.52
780 3927 4.489841 CGAGTTCGATAAGCCACGTAAAAC 60.490 45.833 0.00 0.00 43.02 2.43
781 3928 7.640795 CGAGTTCGATAAGCCACGTAAAACG 62.641 48.000 0.00 0.00 44.58 3.60
791 3938 2.609759 CGTAAAACGCCGTTGCCCT 61.610 57.895 1.95 0.00 33.65 5.19
793 3940 1.227883 TAAAACGCCGTTGCCCTCA 60.228 52.632 1.95 0.00 0.00 3.86
794 3941 0.818445 TAAAACGCCGTTGCCCTCAA 60.818 50.000 1.95 0.00 0.00 3.02
795 3942 1.460273 AAAACGCCGTTGCCCTCAAT 61.460 50.000 1.95 0.00 34.29 2.57
866 7612 1.767289 CGTCATGGAGGCGTACATAC 58.233 55.000 3.26 2.98 41.32 2.39
908 7654 4.777384 GCAGGGGGCAAAACAAAG 57.223 55.556 0.00 0.00 43.97 2.77
909 7655 1.071299 GCAGGGGGCAAAACAAAGG 59.929 57.895 0.00 0.00 43.97 3.11
910 7656 1.071299 CAGGGGGCAAAACAAAGGC 59.929 57.895 0.00 0.00 0.00 4.35
1051 7798 3.907260 CTCCTCCGGCAGCTGCAAA 62.907 63.158 37.63 21.61 44.36 3.68
1161 7908 0.381089 CTTCTACGGCACTAGGGTCG 59.619 60.000 19.29 19.29 0.00 4.79
1305 8052 2.295070 GGAGGTGGCGTGTTATGTTTTT 59.705 45.455 0.00 0.00 0.00 1.94
1317 8064 4.226761 GTTATGTTTTTGCTTCTGTCCGG 58.773 43.478 0.00 0.00 0.00 5.14
1332 8079 2.127003 CGGGCTTTCGGTTTTCGC 60.127 61.111 0.00 0.00 39.05 4.70
1580 8340 5.784750 TTCGAGTTATCTGCTGAACAATG 57.215 39.130 0.00 0.00 0.00 2.82
1594 8354 5.569059 GCTGAACAATGTTAGTTGTGCATAC 59.431 40.000 0.00 0.00 44.48 2.39
1595 8355 6.568462 GCTGAACAATGTTAGTTGTGCATACT 60.568 38.462 0.00 9.11 44.48 2.12
1621 8386 4.651962 GTCAGTCTAAGGGCTAGAGGAATT 59.348 45.833 0.00 0.00 37.32 2.17
1622 8387 5.834204 GTCAGTCTAAGGGCTAGAGGAATTA 59.166 44.000 0.00 0.00 37.32 1.40
1623 8388 5.834204 TCAGTCTAAGGGCTAGAGGAATTAC 59.166 44.000 0.00 0.00 37.32 1.89
1770 8549 6.883217 ACCTAAGTACGAGAATCAGTCAGTTA 59.117 38.462 0.00 0.00 33.17 2.24
2154 8949 0.476338 TGCTTGGGACAGGTTAGCAA 59.524 50.000 0.00 0.00 42.39 3.91
2183 8978 7.671398 AGAAACAGGATGATATTCAGTTTGGTT 59.329 33.333 0.00 0.00 39.69 3.67
2239 9034 2.870372 GCACTTGTGCTAAGGGCG 59.130 61.111 17.36 0.00 45.43 6.13
2304 9099 2.084610 TGCATTCTCTTGTGTCCTCG 57.915 50.000 0.00 0.00 0.00 4.63
2324 9119 6.013379 TCCTCGCATCCTCTTTCCATATTTAT 60.013 38.462 0.00 0.00 0.00 1.40
2372 9168 4.187694 CCACTATTTCTCTCTGCTTGGAC 58.812 47.826 0.00 0.00 0.00 4.02
2377 9173 0.833409 TCTCTCTGCTTGGACTGGCA 60.833 55.000 0.00 0.00 36.94 4.92
2383 9179 1.342174 CTGCTTGGACTGGCACAATTT 59.658 47.619 0.00 0.00 38.70 1.82
2474 9271 5.771469 TGTTTATGATTGTGGAAAGTGCAG 58.229 37.500 0.00 0.00 0.00 4.41
2514 9311 7.379750 GTTTCTCATGTAGTCTTCTTACCTGT 58.620 38.462 0.00 0.00 0.00 4.00
2587 9384 9.364989 CCAAGTACCCAATTATATTGTGTTTTG 57.635 33.333 0.00 0.00 0.00 2.44
2671 9468 1.949525 GCAAGCACTGGAGAGAACAAA 59.050 47.619 0.00 0.00 0.00 2.83
2972 9769 4.168101 ACCAAAGGAAGTGGTCAGAGATA 58.832 43.478 0.00 0.00 46.79 1.98
3235 10034 8.365210 GTGTTCATTCAAGCATAATTACAAACG 58.635 33.333 0.00 0.00 0.00 3.60
3242 10041 2.032426 GCATAATTACAAACGTCCCCCG 59.968 50.000 0.00 0.00 44.03 5.73
3290 10089 7.649306 GCTTTTCTGCTTATTTGACTTCTTTCA 59.351 33.333 0.00 0.00 0.00 2.69
3297 10096 8.412456 TGCTTATTTGACTTCTTTCATTGACAA 58.588 29.630 0.00 0.00 0.00 3.18
3326 10125 1.112916 TCTGGTTGGTGCTCGACTGA 61.113 55.000 0.00 0.00 0.00 3.41
3327 10126 0.668706 CTGGTTGGTGCTCGACTGAG 60.669 60.000 0.00 0.00 45.49 3.35
3744 10559 3.423571 CGAGAAATTGCAACAGATCAGC 58.576 45.455 0.00 0.00 0.00 4.26
3747 10562 3.442977 AGAAATTGCAACAGATCAGCTCC 59.557 43.478 0.00 0.00 0.00 4.70
3791 10606 0.542702 CCCATTGCCCCTCTTTGTGT 60.543 55.000 0.00 0.00 0.00 3.72
3804 10619 5.760253 CCCTCTTTGTGTGCTAATAGTATGG 59.240 44.000 0.00 0.00 0.00 2.74
3815 10630 4.809426 GCTAATAGTATGGTTGCGTCTGTT 59.191 41.667 0.00 0.00 0.00 3.16
3816 10631 5.293569 GCTAATAGTATGGTTGCGTCTGTTT 59.706 40.000 0.00 0.00 0.00 2.83
3817 10632 6.183360 GCTAATAGTATGGTTGCGTCTGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
3818 10633 6.569179 AATAGTATGGTTGCGTCTGTTTTT 57.431 33.333 0.00 0.00 0.00 1.94
3903 10718 0.179150 AGACATCTTCTGCTCGCGTC 60.179 55.000 5.77 0.00 31.12 5.19
4306 11121 6.902224 AATGTGTTGTTTGTTTAGGCTTTC 57.098 33.333 0.00 0.00 0.00 2.62
4403 11218 4.223923 ACAACTTAACTAGGAGCTCTGCAT 59.776 41.667 14.64 0.10 0.00 3.96
4404 11219 5.422331 ACAACTTAACTAGGAGCTCTGCATA 59.578 40.000 14.64 1.34 0.00 3.14
4405 11220 5.782893 ACTTAACTAGGAGCTCTGCATAG 57.217 43.478 14.64 12.74 0.00 2.23
4595 11418 7.009631 CGAAGGATATTATCAGTAATTCTGCGG 59.990 40.741 6.04 0.00 43.32 5.69
4620 11443 1.190643 AGAGTGCCTCTTACCTCTGC 58.809 55.000 0.00 0.00 37.60 4.26
4662 11485 2.494059 CCTGTTACCTCTGTTGGTGTG 58.506 52.381 0.00 0.00 41.05 3.82
4676 11499 1.070134 TGGTGTGAGTAACCACTGAGC 59.930 52.381 0.00 0.00 42.82 4.26
4720 11544 0.988145 CATCCTGCCTGTTAGGGGGA 60.988 60.000 0.00 0.00 35.37 4.81
4746 11570 7.068686 AGGAGAGACTATGGGCTTTATTTAC 57.931 40.000 0.00 0.00 0.00 2.01
4759 11583 6.349860 GGGCTTTATTTACTCAAAACCACGAT 60.350 38.462 0.00 0.00 0.00 3.73
4774 11598 3.569916 CGATAGTGCATAGCCACGT 57.430 52.632 0.00 0.00 40.59 4.49
4781 11605 0.108186 TGCATAGCCACGTCTCAAGG 60.108 55.000 0.00 0.00 0.00 3.61
4787 11611 1.674057 CCACGTCTCAAGGGAAGCT 59.326 57.895 0.00 0.00 0.00 3.74
4788 11612 0.671781 CCACGTCTCAAGGGAAGCTG 60.672 60.000 0.00 0.00 0.00 4.24
4859 11683 2.158534 TGTCACACCTAACCAAATGCCT 60.159 45.455 0.00 0.00 0.00 4.75
4914 11738 1.075482 CCCCTGCACAGTCCACATT 59.925 57.895 0.00 0.00 0.00 2.71
4986 11810 1.064758 TGGAACAGCAACCAGTTCAGT 60.065 47.619 7.49 0.00 44.46 3.41
5013 11837 2.613977 CCACTCGCTCCTCAGAATTTGT 60.614 50.000 0.00 0.00 0.00 2.83
5045 11869 4.569719 AGGAATTACCCAAAGTCGTCAT 57.430 40.909 0.00 0.00 40.05 3.06
5232 12057 4.907579 TGTAACATGTATGAAAGCGCATG 58.092 39.130 11.47 4.13 42.93 4.06
5278 12103 1.761784 TCATGCCTGGTTTTTGCTGTT 59.238 42.857 0.00 0.00 0.00 3.16
5300 12125 7.695820 TGTTGTTATTTACTTACGCTTTGTGT 58.304 30.769 0.00 0.00 0.00 3.72
5331 12156 2.710096 TGTAAGCCCCTGTTGCTATC 57.290 50.000 0.00 0.00 38.34 2.08
5410 12235 0.036164 ACCTGCATGCGGTCTGTTAA 59.964 50.000 24.56 0.00 0.00 2.01
5446 12271 5.009631 TGCTTATTACAATCACTGCACCTT 58.990 37.500 0.00 0.00 0.00 3.50
5449 12274 3.788227 TTACAATCACTGCACCTTCCT 57.212 42.857 0.00 0.00 0.00 3.36
5455 12280 0.664761 CACTGCACCTTCCTTGTGTG 59.335 55.000 0.00 0.00 36.11 3.82
5586 12411 7.466590 GCTCTCATCAGGTTTAGTTCTATTTGC 60.467 40.741 0.00 0.00 0.00 3.68
5622 12447 4.286032 TGTGTTCCTGTAAGCAGTCCTAAT 59.714 41.667 0.00 0.00 41.02 1.73
5666 12491 4.727507 ATACTGAAGTTCTCATGCGAGT 57.272 40.909 4.17 0.00 40.44 4.18
5710 12536 3.520290 TCCAAGAGCCGTACATAACAG 57.480 47.619 0.00 0.00 0.00 3.16
5740 12568 4.278170 AGCTACAAATAAACAGTGCTGCAA 59.722 37.500 2.77 0.00 0.00 4.08
5741 12569 5.047802 AGCTACAAATAAACAGTGCTGCAAT 60.048 36.000 2.77 0.00 0.00 3.56
5770 12598 5.993441 TGGACTAAACTACTTAACCTTGTGC 59.007 40.000 0.00 0.00 0.00 4.57
6018 12846 2.430694 GTTGGTTCAGTTTTCCCTTGCT 59.569 45.455 0.00 0.00 0.00 3.91
6040 12868 6.319152 TGCTACTGAGGAGTAAGTACTTCATC 59.681 42.308 12.39 11.05 36.50 2.92
6043 12871 6.971340 ACTGAGGAGTAAGTACTTCATCCTA 58.029 40.000 28.66 19.72 37.61 2.94
6047 12875 9.931698 TGAGGAGTAAGTACTTCATCCTAAATA 57.068 33.333 28.66 18.09 37.61 1.40
6292 13126 7.774134 TGCATGCTTTGATATTCAACACTAAT 58.226 30.769 20.33 0.00 35.89 1.73
6417 13314 7.285783 TCGTAAGGACAAATCTAAACGAATG 57.714 36.000 0.00 0.00 38.47 2.67
6528 13428 3.328535 TGGTACATAGCCCATCAGAGA 57.671 47.619 0.00 0.00 0.00 3.10
6529 13429 2.965831 TGGTACATAGCCCATCAGAGAC 59.034 50.000 0.00 0.00 0.00 3.36
6530 13430 2.029828 GGTACATAGCCCATCAGAGACG 60.030 54.545 0.00 0.00 0.00 4.18
6531 13431 1.043816 ACATAGCCCATCAGAGACGG 58.956 55.000 0.00 0.00 0.00 4.79
6532 13432 0.319728 CATAGCCCATCAGAGACGGG 59.680 60.000 0.00 0.00 43.42 5.28
6533 13433 0.833834 ATAGCCCATCAGAGACGGGG 60.834 60.000 0.00 1.15 43.72 5.73
6534 13434 3.083997 GCCCATCAGAGACGGGGT 61.084 66.667 0.00 0.00 42.79 4.95
6535 13435 3.095347 GCCCATCAGAGACGGGGTC 62.095 68.421 0.00 0.00 42.79 4.46
6589 13489 1.134401 CCTGGAAGCGGCAAAGAGATA 60.134 52.381 1.45 0.00 0.00 1.98
6593 13493 2.159028 GGAAGCGGCAAAGAGATACTCT 60.159 50.000 1.45 0.00 43.37 3.24
6725 13629 1.009675 GCCTGTCGTGTTTGCAGTG 60.010 57.895 0.00 0.00 0.00 3.66
6738 13642 2.993471 GCAGTGGCAAATGTCCGGG 61.993 63.158 0.00 0.00 40.72 5.73
6749 13653 0.604511 ATGTCCGGGTTGTCGTTTCC 60.605 55.000 0.00 0.00 0.00 3.13
6753 13658 1.026584 CCGGGTTGTCGTTTCCTTTT 58.973 50.000 0.00 0.00 0.00 2.27
6759 13664 3.065233 GGTTGTCGTTTCCTTTTAACGGT 59.935 43.478 8.08 0.00 46.10 4.83
6760 13665 3.948196 TGTCGTTTCCTTTTAACGGTG 57.052 42.857 8.08 0.00 46.10 4.94
6762 13667 4.437239 TGTCGTTTCCTTTTAACGGTGTA 58.563 39.130 8.08 0.00 46.10 2.90
6822 13727 1.657751 GGGAAAGCTGCATCGGTTCC 61.658 60.000 14.30 14.30 0.00 3.62
6857 13762 2.731976 GTGACTCTTGACTTGGTTAGCG 59.268 50.000 0.00 0.00 0.00 4.26
6919 13932 7.908601 GGAAATTAGATCGTGTACCAATGTTTC 59.091 37.037 0.00 0.00 0.00 2.78
6970 13995 1.328680 ACGCATGCTGCTAAAAGATCG 59.671 47.619 17.13 0.00 42.25 3.69
6987 14012 4.442706 AGATCGTTCAAGACAAACTGTGT 58.557 39.130 0.00 0.00 45.74 3.72
7011 14036 7.093814 TGTTGTGCTTAGCAATCCATTATCTTT 60.094 33.333 9.05 0.00 41.47 2.52
7012 14037 8.405531 GTTGTGCTTAGCAATCCATTATCTTTA 58.594 33.333 9.05 0.00 41.47 1.85
7013 14038 8.696043 TGTGCTTAGCAATCCATTATCTTTAT 57.304 30.769 9.05 0.00 41.47 1.40
7062 14087 3.517100 GCAGGATGGCAGGAAGAGATATA 59.483 47.826 0.00 0.00 35.86 0.86
7152 14177 2.222227 CCCCTCTTCTCTTTTTGGGG 57.778 55.000 0.00 0.00 46.89 4.96
7153 14178 1.429299 CCCCTCTTCTCTTTTTGGGGT 59.571 52.381 6.73 0.00 46.84 4.95
7154 14179 2.647802 CCCCTCTTCTCTTTTTGGGGTA 59.352 50.000 6.73 0.00 46.84 3.69
7155 14180 3.269643 CCCCTCTTCTCTTTTTGGGGTAT 59.730 47.826 6.73 0.00 46.84 2.73
7157 14182 4.273318 CCTCTTCTCTTTTTGGGGTATGG 58.727 47.826 0.00 0.00 0.00 2.74
7158 14183 4.263949 CCTCTTCTCTTTTTGGGGTATGGT 60.264 45.833 0.00 0.00 0.00 3.55
7159 14184 4.918588 TCTTCTCTTTTTGGGGTATGGTC 58.081 43.478 0.00 0.00 0.00 4.02
7160 14185 4.352595 TCTTCTCTTTTTGGGGTATGGTCA 59.647 41.667 0.00 0.00 0.00 4.02
7161 14186 4.946160 TCTCTTTTTGGGGTATGGTCAT 57.054 40.909 0.00 0.00 0.00 3.06
7162 14187 4.855340 TCTCTTTTTGGGGTATGGTCATC 58.145 43.478 0.00 0.00 0.00 2.92
7349 14374 1.340991 GGCCCACCTCTGAAATTAGCA 60.341 52.381 0.00 0.00 0.00 3.49
7359 14384 6.151817 ACCTCTGAAATTAGCATGAAGAAACC 59.848 38.462 0.00 0.00 0.00 3.27
7451 14476 5.539048 AGCTAGTTTCATACGTGTTTCTGT 58.461 37.500 0.00 0.00 0.00 3.41
7452 14477 6.684686 AGCTAGTTTCATACGTGTTTCTGTA 58.315 36.000 0.00 0.00 0.00 2.74
7462 14487 9.394767 TCATACGTGTTTCTGTATAGTTACCTA 57.605 33.333 0.00 0.00 30.41 3.08
7501 14540 0.320697 ACCGGCTTTCTTTAGACGCT 59.679 50.000 0.00 0.00 45.31 5.07
7558 14600 8.594687 CAGTTTCTTTTCTGTAACAATGTTTGG 58.405 33.333 3.17 0.00 34.12 3.28
7566 14608 6.872920 TCTGTAACAATGTTTGGCTTTTCTT 58.127 32.000 3.17 0.00 34.12 2.52
7608 14650 4.083565 GGTAATAGTTTGGGCTGAAACCA 58.916 43.478 8.45 0.00 36.63 3.67
7705 14747 5.874261 GGTTTGGTGTGGGATTTAATGATTG 59.126 40.000 0.00 0.00 0.00 2.67
7757 17714 5.774498 AACAAATCAGTCTCAAACCCTTC 57.226 39.130 0.00 0.00 0.00 3.46
7762 17719 7.725844 ACAAATCAGTCTCAAACCCTTCTTATT 59.274 33.333 0.00 0.00 0.00 1.40
7766 17723 7.741785 TCAGTCTCAAACCCTTCTTATTTACA 58.258 34.615 0.00 0.00 0.00 2.41
7785 17742 1.734465 CAGACAAAATCCAGTCGAGCC 59.266 52.381 0.00 0.00 39.67 4.70
7791 17748 0.620556 AATCCAGTCGAGCCACCATT 59.379 50.000 0.00 0.00 0.00 3.16
7793 17750 1.191489 TCCAGTCGAGCCACCATTCA 61.191 55.000 0.00 0.00 0.00 2.57
7817 17775 2.073816 ACCGATTTTGCTTCCTGTACG 58.926 47.619 0.00 0.00 0.00 3.67
7986 18149 2.168496 ACCTAGACACGCACTGTACAT 58.832 47.619 0.00 0.00 31.03 2.29
8001 18164 0.817654 TACATCAGCAGCTACGCACT 59.182 50.000 0.00 0.00 0.00 4.40
8025 18188 6.750148 TGAACACACACTTGGTTTAAAACTT 58.250 32.000 4.60 0.00 0.00 2.66
8027 18190 7.169982 TGAACACACACTTGGTTTAAAACTTTG 59.830 33.333 4.60 1.72 0.00 2.77
8028 18191 5.929415 ACACACACTTGGTTTAAAACTTTGG 59.071 36.000 4.60 0.00 0.00 3.28
8039 18202 2.979814 AAACTTTGGGTTCCAACTGC 57.020 45.000 0.00 0.00 43.82 4.40
8061 18224 6.131264 TGCATGTAGGAAATGATCTGGATTT 58.869 36.000 0.00 0.00 0.00 2.17
8067 18230 5.727434 AGGAAATGATCTGGATTTGTTTGC 58.273 37.500 0.00 0.00 0.00 3.68
8092 18255 6.418057 TTGAAAATGCCTACAGTTTGGATT 57.582 33.333 0.00 0.00 43.63 3.01
8253 18416 5.472137 TCCAACATTACAACTGAAAGCTACC 59.528 40.000 0.00 0.00 37.60 3.18
8254 18417 5.335661 CCAACATTACAACTGAAAGCTACCC 60.336 44.000 0.00 0.00 37.60 3.69
8273 18436 1.004560 AGACACCCATGCGACACTG 60.005 57.895 0.00 0.00 0.00 3.66
8286 18449 1.920574 CGACACTGGCAAATAGAGACG 59.079 52.381 0.00 0.00 0.00 4.18
8320 18483 1.886542 GCTTCATGTTTTCTTCCCGGT 59.113 47.619 0.00 0.00 0.00 5.28
8334 18497 2.516906 TCCCGGTGTTATTTTGGGTTC 58.483 47.619 0.00 0.00 40.86 3.62
8335 18498 2.158505 TCCCGGTGTTATTTTGGGTTCA 60.159 45.455 0.00 0.00 40.86 3.18
8336 18499 2.829120 CCCGGTGTTATTTTGGGTTCAT 59.171 45.455 0.00 0.00 35.05 2.57
8337 18500 3.367910 CCCGGTGTTATTTTGGGTTCATG 60.368 47.826 0.00 0.00 35.05 3.07
8338 18501 3.249917 CGGTGTTATTTTGGGTTCATGC 58.750 45.455 0.00 0.00 0.00 4.06
8339 18502 3.305676 CGGTGTTATTTTGGGTTCATGCA 60.306 43.478 0.00 0.00 0.00 3.96
8340 18503 4.620332 CGGTGTTATTTTGGGTTCATGCAT 60.620 41.667 0.00 0.00 0.00 3.96
8341 18504 4.630940 GGTGTTATTTTGGGTTCATGCATG 59.369 41.667 21.07 21.07 0.00 4.06
8342 18505 5.477510 GTGTTATTTTGGGTTCATGCATGA 58.522 37.500 25.42 25.42 34.44 3.07
8343 18506 6.108015 GTGTTATTTTGGGTTCATGCATGAT 58.892 36.000 29.13 14.50 36.56 2.45
8344 18507 6.594937 GTGTTATTTTGGGTTCATGCATGATT 59.405 34.615 29.13 9.84 36.56 2.57
8345 18508 6.594547 TGTTATTTTGGGTTCATGCATGATTG 59.405 34.615 29.13 4.21 36.56 2.67
8346 18509 4.620589 TTTTGGGTTCATGCATGATTGT 57.379 36.364 29.13 0.00 36.56 2.71
8347 18510 4.620589 TTTGGGTTCATGCATGATTGTT 57.379 36.364 29.13 0.00 36.56 2.83
8348 18511 3.872511 TGGGTTCATGCATGATTGTTC 57.127 42.857 29.13 16.80 36.56 3.18
8349 18512 2.164017 TGGGTTCATGCATGATTGTTCG 59.836 45.455 29.13 0.00 36.56 3.95
8350 18513 2.164219 GGGTTCATGCATGATTGTTCGT 59.836 45.455 29.13 0.00 36.56 3.85
8351 18514 3.367292 GGGTTCATGCATGATTGTTCGTT 60.367 43.478 29.13 0.00 36.56 3.85
8352 18515 4.142491 GGGTTCATGCATGATTGTTCGTTA 60.142 41.667 29.13 8.97 36.56 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.866015 TGGGGTTGATCTCACGATCT 58.134 50.000 0.00 0.00 45.10 2.75
1 2 2.691409 TTGGGGTTGATCTCACGATC 57.309 50.000 0.00 0.00 45.09 3.69
2 3 3.433306 TTTTGGGGTTGATCTCACGAT 57.567 42.857 0.00 0.00 0.00 3.73
3 4 2.940994 TTTTGGGGTTGATCTCACGA 57.059 45.000 0.00 0.00 0.00 4.35
55 56 9.487442 ACATACCCCACATAAAAGTTATCAAAT 57.513 29.630 0.00 0.00 0.00 2.32
56 57 8.887264 ACATACCCCACATAAAAGTTATCAAA 57.113 30.769 0.00 0.00 0.00 2.69
57 58 8.333235 AGACATACCCCACATAAAAGTTATCAA 58.667 33.333 0.00 0.00 0.00 2.57
58 59 7.867921 AGACATACCCCACATAAAAGTTATCA 58.132 34.615 0.00 0.00 0.00 2.15
59 60 9.269453 GTAGACATACCCCACATAAAAGTTATC 57.731 37.037 0.00 0.00 0.00 1.75
60 61 8.774183 TGTAGACATACCCCACATAAAAGTTAT 58.226 33.333 0.00 0.00 0.00 1.89
61 62 8.148437 TGTAGACATACCCCACATAAAAGTTA 57.852 34.615 0.00 0.00 0.00 2.24
62 63 7.023171 TGTAGACATACCCCACATAAAAGTT 57.977 36.000 0.00 0.00 0.00 2.66
63 64 6.630203 TGTAGACATACCCCACATAAAAGT 57.370 37.500 0.00 0.00 0.00 2.66
64 65 5.527582 GCTGTAGACATACCCCACATAAAAG 59.472 44.000 0.00 0.00 0.00 2.27
65 66 5.433526 GCTGTAGACATACCCCACATAAAA 58.566 41.667 0.00 0.00 0.00 1.52
66 67 4.141574 GGCTGTAGACATACCCCACATAAA 60.142 45.833 0.00 0.00 0.00 1.40
67 68 3.389983 GGCTGTAGACATACCCCACATAA 59.610 47.826 0.00 0.00 0.00 1.90
68 69 2.969950 GGCTGTAGACATACCCCACATA 59.030 50.000 0.00 0.00 0.00 2.29
69 70 1.768870 GGCTGTAGACATACCCCACAT 59.231 52.381 0.00 0.00 0.00 3.21
70 71 1.200519 GGCTGTAGACATACCCCACA 58.799 55.000 0.00 0.00 0.00 4.17
71 72 0.468648 GGGCTGTAGACATACCCCAC 59.531 60.000 8.96 0.00 36.59 4.61
72 73 2.925078 GGGCTGTAGACATACCCCA 58.075 57.895 8.96 0.00 36.59 4.96
74 75 0.693092 TGGGGGCTGTAGACATACCC 60.693 60.000 10.97 10.97 39.90 3.69
75 76 1.209621 TTGGGGGCTGTAGACATACC 58.790 55.000 0.00 0.00 0.00 2.73
76 77 3.359695 TTTTGGGGGCTGTAGACATAC 57.640 47.619 0.00 0.00 0.00 2.39
78 79 2.990740 TTTTTGGGGGCTGTAGACAT 57.009 45.000 0.00 0.00 0.00 3.06
94 95 7.715657 TGTACATTGAGTTTGAGCTGATTTTT 58.284 30.769 0.00 0.00 0.00 1.94
95 96 7.275888 TGTACATTGAGTTTGAGCTGATTTT 57.724 32.000 0.00 0.00 0.00 1.82
96 97 6.882610 TGTACATTGAGTTTGAGCTGATTT 57.117 33.333 0.00 0.00 0.00 2.17
97 98 7.458409 AATGTACATTGAGTTTGAGCTGATT 57.542 32.000 20.19 0.00 0.00 2.57
98 99 7.458409 AAATGTACATTGAGTTTGAGCTGAT 57.542 32.000 21.46 0.00 0.00 2.90
99 100 6.882610 AAATGTACATTGAGTTTGAGCTGA 57.117 33.333 21.46 0.00 0.00 4.26
100 101 8.032952 TCTAAATGTACATTGAGTTTGAGCTG 57.967 34.615 25.90 5.13 32.26 4.24
101 102 8.097038 TCTCTAAATGTACATTGAGTTTGAGCT 58.903 33.333 25.90 9.38 32.26 4.09
102 103 8.256611 TCTCTAAATGTACATTGAGTTTGAGC 57.743 34.615 25.90 0.00 32.26 4.26
134 135 8.391106 GCTACTATTCACATTCGATTTGTCTTT 58.609 33.333 0.00 0.00 0.00 2.52
135 136 7.549134 TGCTACTATTCACATTCGATTTGTCTT 59.451 33.333 0.00 0.00 0.00 3.01
136 137 7.041721 TGCTACTATTCACATTCGATTTGTCT 58.958 34.615 0.00 0.00 0.00 3.41
137 138 7.234187 TGCTACTATTCACATTCGATTTGTC 57.766 36.000 0.00 0.00 0.00 3.18
138 139 7.334421 AGTTGCTACTATTCACATTCGATTTGT 59.666 33.333 0.00 0.00 31.21 2.83
139 140 7.688372 AGTTGCTACTATTCACATTCGATTTG 58.312 34.615 0.00 0.00 31.21 2.32
140 141 7.849804 AGTTGCTACTATTCACATTCGATTT 57.150 32.000 0.00 0.00 31.21 2.17
141 142 7.849804 AAGTTGCTACTATTCACATTCGATT 57.150 32.000 0.00 0.00 33.17 3.34
142 143 7.849804 AAAGTTGCTACTATTCACATTCGAT 57.150 32.000 0.00 0.00 33.17 3.59
143 144 7.360861 CCAAAAGTTGCTACTATTCACATTCGA 60.361 37.037 0.00 0.00 33.17 3.71
144 145 6.742718 CCAAAAGTTGCTACTATTCACATTCG 59.257 38.462 0.00 0.00 33.17 3.34
145 146 7.538678 CACCAAAAGTTGCTACTATTCACATTC 59.461 37.037 0.00 0.00 33.17 2.67
146 147 7.230510 TCACCAAAAGTTGCTACTATTCACATT 59.769 33.333 0.00 0.00 33.17 2.71
147 148 6.714810 TCACCAAAAGTTGCTACTATTCACAT 59.285 34.615 0.00 0.00 33.17 3.21
148 149 6.058833 TCACCAAAAGTTGCTACTATTCACA 58.941 36.000 0.00 0.00 33.17 3.58
149 150 6.554334 TCACCAAAAGTTGCTACTATTCAC 57.446 37.500 0.00 0.00 33.17 3.18
150 151 7.759489 ATTCACCAAAAGTTGCTACTATTCA 57.241 32.000 0.00 0.00 33.17 2.57
151 152 8.947115 ACTATTCACCAAAAGTTGCTACTATTC 58.053 33.333 0.00 0.00 33.17 1.75
152 153 8.863872 ACTATTCACCAAAAGTTGCTACTATT 57.136 30.769 0.00 0.00 33.17 1.73
153 154 9.379791 GTACTATTCACCAAAAGTTGCTACTAT 57.620 33.333 0.00 0.00 33.17 2.12
154 155 8.591072 AGTACTATTCACCAAAAGTTGCTACTA 58.409 33.333 0.00 0.00 33.17 1.82
155 156 7.450903 AGTACTATTCACCAAAAGTTGCTACT 58.549 34.615 0.00 0.00 35.68 2.57
156 157 7.668525 AGTACTATTCACCAAAAGTTGCTAC 57.331 36.000 0.00 0.00 0.00 3.58
157 158 8.685838 AAAGTACTATTCACCAAAAGTTGCTA 57.314 30.769 0.00 0.00 0.00 3.49
158 159 7.582667 AAAGTACTATTCACCAAAAGTTGCT 57.417 32.000 0.00 0.00 0.00 3.91
159 160 9.177304 GTTAAAGTACTATTCACCAAAAGTTGC 57.823 33.333 0.00 0.00 0.00 4.17
162 163 9.623000 AGTGTTAAAGTACTATTCACCAAAAGT 57.377 29.630 0.00 0.00 0.00 2.66
226 227 8.758829 ACCTCAAAAAGTTTCAACTCCTAATTT 58.241 29.630 0.00 0.00 38.57 1.82
227 228 8.306313 ACCTCAAAAAGTTTCAACTCCTAATT 57.694 30.769 0.00 0.00 38.57 1.40
228 229 7.898014 ACCTCAAAAAGTTTCAACTCCTAAT 57.102 32.000 0.00 0.00 38.57 1.73
229 230 7.543756 CAACCTCAAAAAGTTTCAACTCCTAA 58.456 34.615 0.00 0.00 38.57 2.69
230 231 6.405397 GCAACCTCAAAAAGTTTCAACTCCTA 60.405 38.462 0.00 0.00 38.57 2.94
231 232 5.624509 GCAACCTCAAAAAGTTTCAACTCCT 60.625 40.000 0.00 0.00 38.57 3.69
232 233 4.566759 GCAACCTCAAAAAGTTTCAACTCC 59.433 41.667 0.00 0.00 38.57 3.85
233 234 5.062183 GTGCAACCTCAAAAAGTTTCAACTC 59.938 40.000 0.00 0.00 38.57 3.01
234 235 4.929211 GTGCAACCTCAAAAAGTTTCAACT 59.071 37.500 0.00 0.00 42.04 3.16
235 236 4.688413 TGTGCAACCTCAAAAAGTTTCAAC 59.312 37.500 0.00 0.00 34.36 3.18
236 237 4.887748 TGTGCAACCTCAAAAAGTTTCAA 58.112 34.783 0.00 0.00 34.36 2.69
237 238 4.527509 TGTGCAACCTCAAAAAGTTTCA 57.472 36.364 0.00 0.00 34.36 2.69
238 239 5.108517 TGATGTGCAACCTCAAAAAGTTTC 58.891 37.500 0.00 0.00 38.55 2.78
239 240 5.083533 TGATGTGCAACCTCAAAAAGTTT 57.916 34.783 0.00 0.00 38.55 2.66
240 241 4.734398 TGATGTGCAACCTCAAAAAGTT 57.266 36.364 0.00 0.00 38.55 2.66
241 242 4.734398 TTGATGTGCAACCTCAAAAAGT 57.266 36.364 0.00 0.00 46.12 2.66
247 248 3.635836 TCAATGTTTGATGTGCAACCTCA 59.364 39.130 0.00 0.00 39.76 3.86
248 249 4.241590 TCAATGTTTGATGTGCAACCTC 57.758 40.909 0.00 0.00 35.91 3.85
259 260 9.926158 AAATTATAAGCACACATCAATGTTTGA 57.074 25.926 12.28 0.00 40.04 2.69
285 286 5.584251 GGGCTTGTTCAAACATTCTCAAAAA 59.416 36.000 0.00 0.00 38.95 1.94
286 287 5.115480 GGGCTTGTTCAAACATTCTCAAAA 58.885 37.500 0.00 0.00 38.95 2.44
287 288 4.442753 GGGGCTTGTTCAAACATTCTCAAA 60.443 41.667 0.00 0.00 38.95 2.69
288 289 3.069443 GGGGCTTGTTCAAACATTCTCAA 59.931 43.478 0.00 0.00 38.95 3.02
289 290 2.627699 GGGGCTTGTTCAAACATTCTCA 59.372 45.455 0.00 0.00 38.95 3.27
290 291 2.029020 GGGGGCTTGTTCAAACATTCTC 60.029 50.000 0.00 0.00 38.95 2.87
291 292 1.970640 GGGGGCTTGTTCAAACATTCT 59.029 47.619 0.00 0.00 38.95 2.40
292 293 2.455674 GGGGGCTTGTTCAAACATTC 57.544 50.000 0.00 0.00 38.95 2.67
316 317 7.012044 CGTTAATATCTTCAAAACTACTGGGGG 59.988 40.741 0.00 0.00 0.00 5.40
317 318 7.466860 GCGTTAATATCTTCAAAACTACTGGGG 60.467 40.741 0.00 0.00 0.00 4.96
318 319 7.065324 TGCGTTAATATCTTCAAAACTACTGGG 59.935 37.037 0.00 0.00 0.00 4.45
319 320 7.970384 TGCGTTAATATCTTCAAAACTACTGG 58.030 34.615 0.00 0.00 0.00 4.00
320 321 9.478019 CTTGCGTTAATATCTTCAAAACTACTG 57.522 33.333 0.00 0.00 0.00 2.74
321 322 9.431887 TCTTGCGTTAATATCTTCAAAACTACT 57.568 29.630 0.00 0.00 0.00 2.57
343 344 5.051816 ACCATTTTCATGTTGCACTTCTTG 58.948 37.500 0.00 0.00 0.00 3.02
345 346 4.942761 ACCATTTTCATGTTGCACTTCT 57.057 36.364 0.00 0.00 0.00 2.85
398 400 5.978322 GCACAACGTTTAGGGTTTAAAATGA 59.022 36.000 0.00 0.00 0.00 2.57
406 408 1.788067 GCGGCACAACGTTTAGGGTT 61.788 55.000 0.00 0.00 35.98 4.11
435 450 3.437213 TCCAACTTCCGAGATCCTACAA 58.563 45.455 0.00 0.00 0.00 2.41
443 458 4.903045 AGGTTATTTCCAACTTCCGAGA 57.097 40.909 0.00 0.00 0.00 4.04
446 461 6.563222 TGTAAAGGTTATTTCCAACTTCCG 57.437 37.500 0.00 0.00 0.00 4.30
447 462 8.418662 ACTTTGTAAAGGTTATTTCCAACTTCC 58.581 33.333 9.00 0.00 40.31 3.46
479 1186 6.767524 ACGCATTATACCCATCAAAGAAAA 57.232 33.333 0.00 0.00 0.00 2.29
491 1498 8.266392 AGAGATACAGTACTACGCATTATACC 57.734 38.462 0.00 0.00 0.00 2.73
500 1507 9.526713 TCACTAGTTAAGAGATACAGTACTACG 57.473 37.037 0.00 0.00 0.00 3.51
506 1513 9.924010 AGGTAATCACTAGTTAAGAGATACAGT 57.076 33.333 0.00 0.00 34.80 3.55
540 1547 0.716108 CAGGTCTTTCGACGATGTGC 59.284 55.000 0.00 0.00 41.16 4.57
545 1552 5.579511 GGATTTATTTCAGGTCTTTCGACGA 59.420 40.000 0.00 0.00 41.16 4.20
549 1556 6.985188 TCTGGATTTATTTCAGGTCTTTCG 57.015 37.500 0.00 0.00 0.00 3.46
571 1578 1.606668 TCACTGGTGGTCGCAATTTTC 59.393 47.619 0.70 0.00 0.00 2.29
579 1586 0.895530 ATACTGGTCACTGGTGGTCG 59.104 55.000 0.70 0.00 0.00 4.79
586 1593 5.661056 TTCAAGTCCTATACTGGTCACTG 57.339 43.478 0.00 0.00 38.88 3.66
587 1594 6.097554 CAGATTCAAGTCCTATACTGGTCACT 59.902 42.308 0.00 0.00 38.88 3.41
588 1595 6.276847 CAGATTCAAGTCCTATACTGGTCAC 58.723 44.000 0.00 0.00 38.88 3.67
589 1596 5.363868 CCAGATTCAAGTCCTATACTGGTCA 59.636 44.000 0.00 0.00 38.88 4.02
590 1597 5.848406 CCAGATTCAAGTCCTATACTGGTC 58.152 45.833 0.00 0.00 38.88 4.02
591 1598 5.878406 CCAGATTCAAGTCCTATACTGGT 57.122 43.478 0.00 0.00 38.88 4.00
592 1599 5.508153 CGACCAGATTCAAGTCCTATACTGG 60.508 48.000 0.00 0.00 45.93 4.00
593 1600 5.299531 TCGACCAGATTCAAGTCCTATACTG 59.700 44.000 0.00 0.00 38.88 2.74
594 1601 5.446860 TCGACCAGATTCAAGTCCTATACT 58.553 41.667 0.00 0.00 41.49 2.12
621 1628 1.602377 CGACCTTCCTTGTGGTGAAAC 59.398 52.381 0.00 0.00 36.59 2.78
622 1629 1.487142 TCGACCTTCCTTGTGGTGAAA 59.513 47.619 0.00 0.00 36.59 2.69
623 1630 1.124780 TCGACCTTCCTTGTGGTGAA 58.875 50.000 0.00 0.00 36.59 3.18
625 1632 2.185004 AATCGACCTTCCTTGTGGTG 57.815 50.000 0.00 0.00 36.59 4.17
627 1634 2.351738 GCAAAATCGACCTTCCTTGTGG 60.352 50.000 0.00 0.00 0.00 4.17
628 1635 2.293122 TGCAAAATCGACCTTCCTTGTG 59.707 45.455 0.00 0.00 0.00 3.33
630 1637 2.665519 CGTGCAAAATCGACCTTCCTTG 60.666 50.000 0.00 0.00 0.00 3.61
631 1638 1.535462 CGTGCAAAATCGACCTTCCTT 59.465 47.619 0.00 0.00 0.00 3.36
633 1640 0.872388 ACGTGCAAAATCGACCTTCC 59.128 50.000 1.06 0.00 0.00 3.46
634 1641 2.093783 CCTACGTGCAAAATCGACCTTC 59.906 50.000 0.00 0.00 0.00 3.46
635 1642 2.073816 CCTACGTGCAAAATCGACCTT 58.926 47.619 0.00 0.00 0.00 3.50
641 1648 5.581085 ACAGAAGATACCTACGTGCAAAATC 59.419 40.000 0.00 0.00 0.00 2.17
689 2894 1.980765 AGACTTCAGTGCAAGGATGGA 59.019 47.619 0.00 0.00 0.00 3.41
779 3926 2.746277 GATTGAGGGCAACGGCGT 60.746 61.111 6.77 6.77 42.47 5.68
780 3927 1.861542 TTTGATTGAGGGCAACGGCG 61.862 55.000 4.80 4.80 42.47 6.46
781 3928 0.316841 TTTTGATTGAGGGCAACGGC 59.683 50.000 0.00 0.00 36.72 5.68
865 7611 3.120786 CGAAAGAACAAGGCGTATTTCGT 60.121 43.478 9.10 1.11 44.20 3.85
866 7612 3.404564 CGAAAGAACAAGGCGTATTTCG 58.595 45.455 3.84 3.84 44.00 3.46
1305 8052 1.302511 GAAAGCCCGGACAGAAGCA 60.303 57.895 0.73 0.00 0.00 3.91
1317 8064 0.110192 CTGAGCGAAAACCGAAAGCC 60.110 55.000 0.00 0.00 41.76 4.35
1332 8079 2.252976 GCTAAATCCAGCTCCCTGAG 57.747 55.000 0.00 0.00 41.77 3.35
1532 8279 2.595095 CTGTGTGTGTGTGGGGGT 59.405 61.111 0.00 0.00 0.00 4.95
1533 8280 2.906897 GCTGTGTGTGTGTGGGGG 60.907 66.667 0.00 0.00 0.00 5.40
1536 8283 0.525311 TTTGTGCTGTGTGTGTGTGG 59.475 50.000 0.00 0.00 0.00 4.17
1538 8285 1.242989 TGTTTGTGCTGTGTGTGTGT 58.757 45.000 0.00 0.00 0.00 3.72
1539 8286 2.565210 ATGTTTGTGCTGTGTGTGTG 57.435 45.000 0.00 0.00 0.00 3.82
1540 8287 2.477694 CGAATGTTTGTGCTGTGTGTGT 60.478 45.455 0.00 0.00 0.00 3.72
1542 8289 2.013400 TCGAATGTTTGTGCTGTGTGT 58.987 42.857 0.00 0.00 0.00 3.72
1580 8340 7.036220 AGACTGACATAGTATGCACAACTAAC 58.964 38.462 10.16 9.28 40.53 2.34
1594 8354 4.764823 CCTCTAGCCCTTAGACTGACATAG 59.235 50.000 0.00 0.00 34.67 2.23
1595 8355 4.415846 TCCTCTAGCCCTTAGACTGACATA 59.584 45.833 0.00 0.00 34.67 2.29
1770 8549 4.141914 ACCGAGACTCACACTTCTTTCTTT 60.142 41.667 2.82 0.00 0.00 2.52
2154 8949 9.918630 CAAACTGAATATCATCCTGTTTCTTTT 57.081 29.630 0.00 0.00 0.00 2.27
2183 8978 5.711506 AGGCAATGACAACACATATCTTTGA 59.288 36.000 0.00 0.00 32.17 2.69
2255 9050 9.178758 GGGTGAAATCTGAAACTGTATTATCTT 57.821 33.333 0.00 0.00 0.00 2.40
2346 9141 3.604582 AGCAGAGAGAAATAGTGGCAAC 58.395 45.455 0.00 0.00 0.00 4.17
2372 9168 9.421806 TCAAACAAGATAATAAAATTGTGCCAG 57.578 29.630 0.00 0.00 36.09 4.85
2383 9179 9.671279 TCTTCAGCTGATCAAACAAGATAATAA 57.329 29.630 19.04 0.00 0.00 1.40
2455 9252 2.754552 GCCTGCACTTTCCACAATCATA 59.245 45.455 0.00 0.00 0.00 2.15
2474 9271 4.016444 TGAGAAACCCTGACAATAATGCC 58.984 43.478 0.00 0.00 0.00 4.40
2514 9311 7.607991 TGGAAAAGAAAAACACAAGGCAATTTA 59.392 29.630 0.00 0.00 0.00 1.40
2818 9615 3.364889 TTCCTGAGAGTACACACAACG 57.635 47.619 0.00 0.00 0.00 4.10
3215 10014 6.405397 GGGGACGTTTGTAATTATGCTTGAAT 60.405 38.462 0.00 0.00 0.00 2.57
3235 10034 1.747745 GGTACAATGCACGGGGGAC 60.748 63.158 0.00 0.00 0.00 4.46
3290 10089 6.218019 CAACCAGAATGTGTCAATTGTCAAT 58.782 36.000 6.96 0.00 0.00 2.57
3297 10096 2.297033 GCACCAACCAGAATGTGTCAAT 59.703 45.455 0.00 0.00 0.00 2.57
3326 10125 7.841282 TGCCTATTAAGACTGATAGTAAGCT 57.159 36.000 5.75 0.00 0.00 3.74
3327 10126 8.145122 AGTTGCCTATTAAGACTGATAGTAAGC 58.855 37.037 5.75 0.00 0.00 3.09
3328 10127 9.469807 CAGTTGCCTATTAAGACTGATAGTAAG 57.530 37.037 0.00 0.00 39.97 2.34
3329 10128 7.926555 GCAGTTGCCTATTAAGACTGATAGTAA 59.073 37.037 6.03 0.45 39.97 2.24
3330 10129 7.287927 AGCAGTTGCCTATTAAGACTGATAGTA 59.712 37.037 6.03 0.00 43.38 1.82
3331 10130 6.098982 AGCAGTTGCCTATTAAGACTGATAGT 59.901 38.462 6.03 0.00 43.38 2.12
3332 10131 6.520272 AGCAGTTGCCTATTAAGACTGATAG 58.480 40.000 6.03 1.01 43.38 2.08
3348 10152 6.611381 TGATAGAATACACAAAAGCAGTTGC 58.389 36.000 0.00 0.00 42.49 4.17
3744 10559 4.142227 CCTCAAAATCAGGAATTGCAGGAG 60.142 45.833 0.00 0.00 31.91 3.69
3747 10562 5.395682 TTCCTCAAAATCAGGAATTGCAG 57.604 39.130 0.00 0.00 43.84 4.41
3791 10606 4.142026 ACAGACGCAACCATACTATTAGCA 60.142 41.667 0.00 0.00 0.00 3.49
4165 10980 7.796838 GCAAATGTATGCTATAAAGATGACGA 58.203 34.615 0.00 0.00 43.06 4.20
4199 11014 8.559536 CCACCATACATTTCATAACTGATGTAC 58.440 37.037 0.00 0.00 32.46 2.90
4306 11121 2.730550 AAGAAGGCAAAATTCGGCTG 57.269 45.000 4.87 0.00 39.56 4.85
4405 11220 3.069586 AGAACAAAAACAGGCTAAAGGGC 59.930 43.478 0.00 0.00 41.20 5.19
4620 11443 4.510340 GGCACTCAATATTACTTACACCCG 59.490 45.833 0.00 0.00 0.00 5.28
4662 11485 7.942990 AGTATGTATAAGCTCAGTGGTTACTC 58.057 38.462 0.00 0.00 40.80 2.59
4720 11544 6.582929 AATAAAGCCCATAGTCTCTCCTTT 57.417 37.500 0.00 0.00 0.00 3.11
4746 11570 4.260375 GCTATGCACTATCGTGGTTTTGAG 60.260 45.833 0.00 0.00 41.51 3.02
4759 11583 1.470051 TGAGACGTGGCTATGCACTA 58.530 50.000 0.00 0.00 0.00 2.74
4774 11598 1.925455 CCCCCAGCTTCCCTTGAGA 60.925 63.158 0.00 0.00 0.00 3.27
4781 11605 2.496070 GTTTAATGTTCCCCCAGCTTCC 59.504 50.000 0.00 0.00 0.00 3.46
4787 11611 3.512219 ACTTCGTTTAATGTTCCCCCA 57.488 42.857 0.00 0.00 0.00 4.96
4788 11612 4.761227 TGTAACTTCGTTTAATGTTCCCCC 59.239 41.667 0.00 0.00 0.00 5.40
4859 11683 4.569162 GGCAACTACAGCGTCATATTGTTA 59.431 41.667 0.00 0.00 0.00 2.41
4914 11738 3.213506 CAATGGTGTGAGGTGAAAGTGA 58.786 45.455 0.00 0.00 0.00 3.41
4986 11810 2.037367 AGGAGCGAGTGGCCTACA 59.963 61.111 3.32 0.00 45.17 2.74
5013 11837 4.962839 TGGGTAATTCCTACTGGGTTCTA 58.037 43.478 0.00 0.00 36.25 2.10
5045 11869 1.092921 GGAAGTCGTGTTGTGTGGCA 61.093 55.000 0.00 0.00 0.00 4.92
5232 12057 2.481289 AAGTCCTGCCAGTAAGAAGC 57.519 50.000 0.00 0.00 0.00 3.86
5238 12063 6.350110 GCATGAAATAAAAAGTCCTGCCAGTA 60.350 38.462 0.00 0.00 29.71 2.74
5300 12125 3.138283 AGGGGCTTACATGCTAATGCTTA 59.862 43.478 0.00 0.00 40.48 3.09
5410 12235 8.915057 ATTGTAATAAGCATGATAGAAGCACT 57.085 30.769 0.00 0.00 0.00 4.40
5446 12271 6.849085 ATTAATGGCAATAACACACAAGGA 57.151 33.333 0.00 0.00 0.00 3.36
5645 12470 4.727507 ACTCGCATGAGAACTTCAGTAT 57.272 40.909 0.00 0.00 45.57 2.12
5710 12536 8.345565 AGCACTGTTTATTTGTAGCTTATATGC 58.654 33.333 0.00 2.42 0.00 3.14
5778 12606 6.197364 TGTTACAAGGTTCAACGTCAAATT 57.803 33.333 0.00 0.00 0.00 1.82
5779 12607 5.821516 TGTTACAAGGTTCAACGTCAAAT 57.178 34.783 0.00 0.00 0.00 2.32
5780 12608 5.821516 ATGTTACAAGGTTCAACGTCAAA 57.178 34.783 0.00 0.00 0.00 2.69
5873 12701 8.990163 AATTAACAAAGGAAACAGGAGAAGTA 57.010 30.769 0.00 0.00 0.00 2.24
6018 12846 6.971340 AGGATGAAGTACTTACTCCTCAGTA 58.029 40.000 23.58 0.00 34.99 2.74
6040 12868 9.236006 CAGGGACATCCTAATTGAATATTTAGG 57.764 37.037 5.01 5.01 46.12 2.69
6043 12871 8.061304 ACACAGGGACATCCTAATTGAATATTT 58.939 33.333 0.00 0.00 46.12 1.40
6047 12875 5.456921 ACACAGGGACATCCTAATTGAAT 57.543 39.130 0.00 0.00 46.12 2.57
6292 13126 3.819368 TGTCAATGGAGCTGTGAAGAAA 58.181 40.909 0.00 0.00 0.00 2.52
6483 13383 4.890088 ACGGCACTGAGTTTAGAAACATA 58.110 39.130 7.82 0.00 41.30 2.29
6528 13428 4.707768 TGATCCCCGTGACCCCGT 62.708 66.667 0.00 0.00 0.00 5.28
6529 13429 4.157120 GTGATCCCCGTGACCCCG 62.157 72.222 0.00 0.00 0.00 5.73
6530 13430 2.375345 ATGTGATCCCCGTGACCCC 61.375 63.158 0.00 0.00 0.00 4.95
6531 13431 1.153168 CATGTGATCCCCGTGACCC 60.153 63.158 0.00 0.00 0.00 4.46
6532 13432 0.828022 TACATGTGATCCCCGTGACC 59.172 55.000 9.11 0.00 0.00 4.02
6533 13433 2.910688 ATACATGTGATCCCCGTGAC 57.089 50.000 9.11 0.00 0.00 3.67
6534 13434 5.955355 TCATATATACATGTGATCCCCGTGA 59.045 40.000 9.11 0.18 28.29 4.35
6535 13435 6.220726 TCATATATACATGTGATCCCCGTG 57.779 41.667 9.11 0.00 28.29 4.94
6589 13489 8.225603 ACACAACTCAAACATATTTTCAGAGT 57.774 30.769 4.64 4.64 32.66 3.24
6593 13493 7.581213 AGGACACAACTCAAACATATTTTCA 57.419 32.000 0.00 0.00 0.00 2.69
6676 13579 6.474751 GCTGAATCAGGACTTGCATATTTTTC 59.525 38.462 12.66 0.00 31.21 2.29
6725 13629 1.584495 GACAACCCGGACATTTGCC 59.416 57.895 0.73 0.00 0.00 4.52
6822 13727 9.429359 AGTCAAGAGTCACAAATAGACAAATAG 57.571 33.333 0.00 0.00 38.46 1.73
6857 13762 1.172812 GGGACAGCACACCAAACCTC 61.173 60.000 0.00 0.00 0.00 3.85
6919 13932 5.278169 CCAGACTGTCCAGATGAAAAACAAG 60.278 44.000 3.76 0.00 0.00 3.16
6970 13995 3.608073 GCACAACACAGTTTGTCTTGAAC 59.392 43.478 4.58 0.00 37.62 3.18
6987 14012 7.408756 AAAGATAATGGATTGCTAAGCACAA 57.591 32.000 0.00 0.00 38.71 3.33
7062 14087 2.767394 TGCTTGCATGCAAATATCCCTT 59.233 40.909 31.37 0.00 40.29 3.95
7152 14177 4.080863 ACCAAGTGAGAAGGATGACCATAC 60.081 45.833 0.00 0.00 38.94 2.39
7153 14178 4.104086 ACCAAGTGAGAAGGATGACCATA 58.896 43.478 0.00 0.00 38.94 2.74
7154 14179 2.915604 ACCAAGTGAGAAGGATGACCAT 59.084 45.455 0.00 0.00 38.94 3.55
7155 14180 2.303022 GACCAAGTGAGAAGGATGACCA 59.697 50.000 0.00 0.00 38.94 4.02
7157 14182 3.685139 TGACCAAGTGAGAAGGATGAC 57.315 47.619 0.00 0.00 0.00 3.06
7158 14183 4.042062 ACATTGACCAAGTGAGAAGGATGA 59.958 41.667 0.00 0.00 0.00 2.92
7159 14184 4.155462 CACATTGACCAAGTGAGAAGGATG 59.845 45.833 0.00 0.00 35.33 3.51
7160 14185 4.202503 ACACATTGACCAAGTGAGAAGGAT 60.203 41.667 14.56 0.00 37.05 3.24
7161 14186 3.136443 ACACATTGACCAAGTGAGAAGGA 59.864 43.478 14.56 0.00 37.05 3.36
7162 14187 3.480470 ACACATTGACCAAGTGAGAAGG 58.520 45.455 14.56 0.00 37.05 3.46
7425 14450 7.817962 ACAGAAACACGTATGAAACTAGCTAAT 59.182 33.333 0.00 0.00 0.00 1.73
7462 14487 6.165577 CCGGTTTCCAATCATCTCAAAATTT 58.834 36.000 0.00 0.00 0.00 1.82
7481 14520 1.154197 GCGTCTAAAGAAAGCCGGTT 58.846 50.000 1.90 0.00 0.00 4.44
7501 14540 7.774157 CGCCTTTATAGACTACTATATCCCTCA 59.226 40.741 0.00 0.00 40.07 3.86
7558 14600 7.116376 GGTTTAATTCTAACAGCCAAGAAAAGC 59.884 37.037 5.91 0.00 35.47 3.51
7566 14608 4.993028 ACCAGGTTTAATTCTAACAGCCA 58.007 39.130 0.00 0.00 0.00 4.75
7608 14650 9.030301 CAAAATGAAAACCGAACTTGAAACTAT 57.970 29.630 0.00 0.00 0.00 2.12
7616 14658 3.133901 AGCCCAAAATGAAAACCGAACTT 59.866 39.130 0.00 0.00 0.00 2.66
7676 14718 4.350368 AAATCCCACACCAAACCAAATC 57.650 40.909 0.00 0.00 0.00 2.17
7705 14747 1.416030 ACCAAACCAAACCAATCCAGC 59.584 47.619 0.00 0.00 0.00 4.85
7757 17714 8.251750 TCGACTGGATTTTGTCTGTAAATAAG 57.748 34.615 0.00 0.00 0.00 1.73
7762 17719 3.994392 GCTCGACTGGATTTTGTCTGTAA 59.006 43.478 0.00 0.00 0.00 2.41
7766 17723 1.347707 TGGCTCGACTGGATTTTGTCT 59.652 47.619 0.00 0.00 0.00 3.41
7785 17742 3.825308 CAAAATCGGTCTGTGAATGGTG 58.175 45.455 0.00 0.00 0.00 4.17
7791 17748 2.151202 GGAAGCAAAATCGGTCTGTGA 58.849 47.619 0.00 0.00 0.00 3.58
7793 17750 2.154462 CAGGAAGCAAAATCGGTCTGT 58.846 47.619 0.00 0.00 0.00 3.41
7855 17813 0.941542 GCCGTAGCATCGCCATTTTA 59.058 50.000 0.00 0.00 39.53 1.52
7921 18082 9.847224 TGTCTAGTTTAGGATTTTCTTTGAAGT 57.153 29.630 0.00 0.00 0.00 3.01
7929 18090 5.638234 AGTGCGTGTCTAGTTTAGGATTTTC 59.362 40.000 0.00 0.00 0.00 2.29
7961 18124 0.531200 AGTGCGTGTCTAGGTTAGCC 59.469 55.000 0.00 0.00 0.00 3.93
8001 18164 6.334102 AGTTTTAAACCAAGTGTGTGTTCA 57.666 33.333 4.01 0.00 0.00 3.18
8025 18188 2.513753 CTACATGCAGTTGGAACCCAA 58.486 47.619 0.00 0.00 41.69 4.12
8027 18190 1.004277 TCCTACATGCAGTTGGAACCC 59.996 52.381 13.83 0.00 46.84 4.11
8028 18191 2.489938 TCCTACATGCAGTTGGAACC 57.510 50.000 13.83 0.00 46.84 3.62
8039 18202 7.578310 ACAAATCCAGATCATTTCCTACATG 57.422 36.000 0.00 0.00 0.00 3.21
8061 18224 3.386078 TGTAGGCATTTTCAAGGCAAACA 59.614 39.130 0.00 0.00 40.56 2.83
8067 18230 4.280677 TCCAAACTGTAGGCATTTTCAAGG 59.719 41.667 0.00 0.00 0.00 3.61
8106 18269 2.234908 CACCAAACCAAACCAGACCAAA 59.765 45.455 0.00 0.00 0.00 3.28
8154 18317 1.148027 TCCAAACATAAACCCAGCCCA 59.852 47.619 0.00 0.00 0.00 5.36
8189 18352 8.498054 TCAAAGATGAATTCTAACTAAGCCTG 57.502 34.615 7.05 0.00 33.05 4.85
8253 18416 2.034879 GTGTCGCATGGGTGTCTGG 61.035 63.158 9.86 0.00 0.00 3.86
8254 18417 1.004560 AGTGTCGCATGGGTGTCTG 60.005 57.895 9.86 0.00 0.00 3.51
8273 18436 1.936547 CAAGGCTCGTCTCTATTTGCC 59.063 52.381 0.00 0.00 40.54 4.52
8317 18480 3.249917 GCATGAACCCAAAATAACACCG 58.750 45.455 0.00 0.00 0.00 4.94
8320 18483 5.735285 TCATGCATGAACCCAAAATAACA 57.265 34.783 26.87 0.00 33.08 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.