Multiple sequence alignment - TraesCS6D01G289400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G289400 chr6D 100.000 2318 0 0 1 2318 400088477 400090794 0.000000e+00 4281.0
1 TraesCS6D01G289400 chr6D 86.567 201 20 4 1336 1529 400089850 400090050 5.020000e-52 215.0
2 TraesCS6D01G289400 chr6A 97.824 1195 20 2 341 1529 545883448 545884642 0.000000e+00 2058.0
3 TraesCS6D01G289400 chr6A 95.390 564 16 3 1392 1948 545884457 545885017 0.000000e+00 889.0
4 TraesCS6D01G289400 chr6A 93.314 344 12 5 1 342 545883078 545883412 4.450000e-137 497.0
5 TraesCS6D01G289400 chr6A 87.571 177 12 3 1950 2116 545885325 545885501 1.820000e-46 196.0
6 TraesCS6D01G289400 chr6B 96.460 1243 35 2 341 1574 599121871 599123113 0.000000e+00 2043.0
7 TraesCS6D01G289400 chr6B 92.079 808 41 6 1336 2120 599122913 599123720 0.000000e+00 1116.0
8 TraesCS6D01G289400 chr6B 90.164 183 15 1 1350 1529 599122976 599123158 3.850000e-58 235.0
9 TraesCS6D01G289400 chr6B 90.968 155 10 4 66 216 599121594 599121748 3.020000e-49 206.0
10 TraesCS6D01G289400 chr4A 95.812 191 8 0 2128 2318 545766688 545766498 2.240000e-80 309.0
11 TraesCS6D01G289400 chr5A 94.241 191 11 0 2128 2318 69238440 69238630 2.250000e-75 292.0
12 TraesCS6D01G289400 chr7B 93.717 191 12 0 2128 2318 421038623 421038813 1.050000e-73 287.0
13 TraesCS6D01G289400 chr7D 90.761 184 17 0 2128 2311 37968304 37968487 1.780000e-61 246.0
14 TraesCS6D01G289400 chr2A 100.000 44 0 0 554 597 595832087 595832130 5.310000e-12 82.4
15 TraesCS6D01G289400 chr2A 100.000 44 0 0 554 597 595872773 595872816 5.310000e-12 82.4
16 TraesCS6D01G289400 chr3A 93.182 44 3 0 805 848 730116394 730116437 5.350000e-07 65.8
17 TraesCS6D01G289400 chr1D 89.796 49 3 1 2079 2127 487627398 487627444 6.920000e-06 62.1
18 TraesCS6D01G289400 chr3B 90.909 44 4 0 805 848 807976563 807976520 2.490000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G289400 chr6D 400088477 400090794 2317 False 2248 4281 93.28350 1 2318 2 chr6D.!!$F1 2317
1 TraesCS6D01G289400 chr6A 545883078 545885501 2423 False 910 2058 93.52475 1 2116 4 chr6A.!!$F1 2115
2 TraesCS6D01G289400 chr6B 599121594 599123720 2126 False 900 2043 92.41775 66 2120 4 chr6B.!!$F1 2054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 322 1.372997 CGCACCCGAAGATATCCCG 60.373 63.158 0.0 3.68 36.29 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2684 0.039618 GGCCTGGAGGGATTTGTTCA 59.96 55.0 0.0 0.0 37.23 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.542462 GCATGTTACTTCTTACTATGACCATAA 57.458 33.333 0.00 0.00 0.00 1.90
51 52 9.712305 ATGACCATAATAACATAGTCTAGCAAC 57.288 33.333 0.00 0.00 0.00 4.17
69 70 8.886719 TCTAGCAACATGATAAATCAAGAACAG 58.113 33.333 0.00 0.00 40.69 3.16
70 71 7.458409 AGCAACATGATAAATCAAGAACAGT 57.542 32.000 0.00 0.00 40.69 3.55
115 117 8.614469 AGCTGATTTAATTAGAGGCAAGATAC 57.386 34.615 0.71 0.00 0.00 2.24
315 322 1.372997 CGCACCCGAAGATATCCCG 60.373 63.158 0.00 3.68 36.29 5.14
497 541 4.161295 CTTCTCCATGGCGCGGGA 62.161 66.667 8.83 12.64 0.00 5.14
810 854 3.426568 GCGAACTCCTGGCAGTGC 61.427 66.667 14.43 6.55 0.00 4.40
1336 1380 2.583685 GAAATCGGGCGACAGCTTGC 62.584 60.000 0.00 0.00 44.37 4.01
1854 1952 3.138798 GGGAGTGCTCGTAGGCGA 61.139 66.667 0.00 0.00 45.79 5.54
1937 2035 1.006571 TGTCCGTCGCTCTGTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
1953 2358 7.069877 TCTGTTTCCTTTACTACCTTTAGCA 57.930 36.000 0.00 0.00 0.00 3.49
1957 2362 9.444600 TGTTTCCTTTACTACCTTTAGCATTAG 57.555 33.333 0.00 0.00 0.00 1.73
2049 2471 6.708949 AGAAACACACGTACCTTTATTCACAT 59.291 34.615 0.00 0.00 0.00 3.21
2120 2542 9.924010 AAATACAGAGTAACTCCTATGACTACT 57.076 33.333 0.00 0.00 0.00 2.57
2123 2545 8.321621 ACAGAGTAACTCCTATGACTACTAGA 57.678 38.462 0.00 0.00 0.00 2.43
2124 2546 8.770322 ACAGAGTAACTCCTATGACTACTAGAA 58.230 37.037 0.00 0.00 0.00 2.10
2125 2547 9.787435 CAGAGTAACTCCTATGACTACTAGAAT 57.213 37.037 0.00 0.00 0.00 2.40
2131 2553 9.569122 AACTCCTATGACTACTAGAATTCTCTC 57.431 37.037 12.24 1.16 32.70 3.20
2132 2554 7.876068 ACTCCTATGACTACTAGAATTCTCTCG 59.124 40.741 12.24 4.58 32.70 4.04
2133 2555 7.737869 TCCTATGACTACTAGAATTCTCTCGT 58.262 38.462 12.24 10.30 32.64 4.18
2134 2556 7.874016 TCCTATGACTACTAGAATTCTCTCGTC 59.126 40.741 12.24 14.03 30.64 4.20
2135 2557 7.658167 CCTATGACTACTAGAATTCTCTCGTCA 59.342 40.741 21.58 21.58 33.31 4.35
2136 2558 7.867305 ATGACTACTAGAATTCTCTCGTCAA 57.133 36.000 22.44 12.92 32.91 3.18
2137 2559 7.310072 TGACTACTAGAATTCTCTCGTCAAG 57.690 40.000 12.24 4.40 30.64 3.02
2138 2560 7.104290 TGACTACTAGAATTCTCTCGTCAAGA 58.896 38.462 12.24 0.00 30.64 3.02
2139 2561 7.771361 TGACTACTAGAATTCTCTCGTCAAGAT 59.229 37.037 12.24 0.00 32.19 2.40
2140 2562 9.263538 GACTACTAGAATTCTCTCGTCAAGATA 57.736 37.037 12.24 0.00 32.19 1.98
2141 2563 9.787435 ACTACTAGAATTCTCTCGTCAAGATAT 57.213 33.333 12.24 0.00 32.19 1.63
2143 2565 8.458573 ACTAGAATTCTCTCGTCAAGATATGT 57.541 34.615 12.24 0.00 32.19 2.29
2144 2566 8.564574 ACTAGAATTCTCTCGTCAAGATATGTC 58.435 37.037 12.24 0.00 32.19 3.06
2145 2567 6.434596 AGAATTCTCTCGTCAAGATATGTCG 58.565 40.000 0.88 0.00 41.11 4.35
2146 2568 5.759506 ATTCTCTCGTCAAGATATGTCGT 57.240 39.130 0.00 0.00 40.69 4.34
2147 2569 4.537936 TCTCTCGTCAAGATATGTCGTG 57.462 45.455 0.00 0.00 40.69 4.35
2148 2570 3.039405 CTCTCGTCAAGATATGTCGTGC 58.961 50.000 0.52 0.00 40.69 5.34
2149 2571 2.120232 CTCGTCAAGATATGTCGTGCC 58.880 52.381 0.52 0.00 40.69 5.01
2150 2572 1.749063 TCGTCAAGATATGTCGTGCCT 59.251 47.619 0.52 0.00 40.69 4.75
2151 2573 2.165641 TCGTCAAGATATGTCGTGCCTT 59.834 45.455 0.52 0.00 40.69 4.35
2152 2574 2.535984 CGTCAAGATATGTCGTGCCTTC 59.464 50.000 0.52 0.00 36.12 3.46
2153 2575 2.866762 GTCAAGATATGTCGTGCCTTCC 59.133 50.000 0.52 0.00 34.38 3.46
2154 2576 2.766263 TCAAGATATGTCGTGCCTTCCT 59.234 45.455 0.52 0.00 34.38 3.36
2155 2577 3.197766 TCAAGATATGTCGTGCCTTCCTT 59.802 43.478 0.52 0.00 34.38 3.36
2156 2578 3.914426 AGATATGTCGTGCCTTCCTTT 57.086 42.857 0.00 0.00 0.00 3.11
2157 2579 3.535561 AGATATGTCGTGCCTTCCTTTG 58.464 45.455 0.00 0.00 0.00 2.77
2158 2580 2.107950 TATGTCGTGCCTTCCTTTGG 57.892 50.000 0.00 0.00 0.00 3.28
2159 2581 0.110486 ATGTCGTGCCTTCCTTTGGT 59.890 50.000 0.00 0.00 0.00 3.67
2160 2582 0.817634 TGTCGTGCCTTCCTTTGGTG 60.818 55.000 0.00 0.00 0.00 4.17
2161 2583 0.818040 GTCGTGCCTTCCTTTGGTGT 60.818 55.000 0.00 0.00 0.00 4.16
2162 2584 0.817634 TCGTGCCTTCCTTTGGTGTG 60.818 55.000 0.00 0.00 0.00 3.82
2163 2585 1.795170 CGTGCCTTCCTTTGGTGTGG 61.795 60.000 0.00 0.00 0.00 4.17
2164 2586 0.755327 GTGCCTTCCTTTGGTGTGGT 60.755 55.000 0.00 0.00 0.00 4.16
2165 2587 0.847373 TGCCTTCCTTTGGTGTGGTA 59.153 50.000 0.00 0.00 0.00 3.25
2166 2588 1.215673 TGCCTTCCTTTGGTGTGGTAA 59.784 47.619 0.00 0.00 0.00 2.85
2167 2589 1.886542 GCCTTCCTTTGGTGTGGTAAG 59.113 52.381 0.00 0.00 0.00 2.34
2168 2590 2.488347 GCCTTCCTTTGGTGTGGTAAGA 60.488 50.000 0.00 0.00 0.00 2.10
2169 2591 3.827722 CCTTCCTTTGGTGTGGTAAGAA 58.172 45.455 0.00 0.00 0.00 2.52
2170 2592 4.211920 CCTTCCTTTGGTGTGGTAAGAAA 58.788 43.478 0.00 0.00 0.00 2.52
2171 2593 4.278419 CCTTCCTTTGGTGTGGTAAGAAAG 59.722 45.833 0.00 0.00 0.00 2.62
2172 2594 4.781775 TCCTTTGGTGTGGTAAGAAAGA 57.218 40.909 0.00 0.00 0.00 2.52
2173 2595 5.118729 TCCTTTGGTGTGGTAAGAAAGAA 57.881 39.130 0.00 0.00 0.00 2.52
2174 2596 5.130350 TCCTTTGGTGTGGTAAGAAAGAAG 58.870 41.667 0.00 0.00 0.00 2.85
2175 2597 4.261614 CCTTTGGTGTGGTAAGAAAGAAGC 60.262 45.833 0.00 0.00 0.00 3.86
2176 2598 2.489971 TGGTGTGGTAAGAAAGAAGCG 58.510 47.619 0.00 0.00 0.00 4.68
2177 2599 2.103432 TGGTGTGGTAAGAAAGAAGCGA 59.897 45.455 0.00 0.00 0.00 4.93
2178 2600 3.135994 GGTGTGGTAAGAAAGAAGCGAA 58.864 45.455 0.00 0.00 0.00 4.70
2179 2601 3.059120 GGTGTGGTAAGAAAGAAGCGAAC 60.059 47.826 0.00 0.00 0.00 3.95
2180 2602 3.558418 GTGTGGTAAGAAAGAAGCGAACA 59.442 43.478 0.00 0.00 0.00 3.18
2181 2603 3.807622 TGTGGTAAGAAAGAAGCGAACAG 59.192 43.478 0.00 0.00 0.00 3.16
2192 2614 3.349006 CGAACAGCGGCAACTGCT 61.349 61.111 1.45 0.00 45.07 4.24
2193 2615 2.896801 CGAACAGCGGCAACTGCTT 61.897 57.895 1.45 0.27 42.95 3.91
2194 2616 1.360192 GAACAGCGGCAACTGCTTT 59.640 52.632 1.45 0.00 42.95 3.51
2195 2617 0.936297 GAACAGCGGCAACTGCTTTG 60.936 55.000 1.45 1.10 42.95 2.77
2196 2618 1.666209 AACAGCGGCAACTGCTTTGT 61.666 50.000 1.45 1.68 42.95 2.83
2197 2619 1.659335 CAGCGGCAACTGCTTTGTG 60.659 57.895 1.45 0.00 42.95 3.33
2198 2620 2.355009 GCGGCAACTGCTTTGTGG 60.355 61.111 1.06 0.00 41.70 4.17
2199 2621 2.355009 CGGCAACTGCTTTGTGGC 60.355 61.111 1.06 0.00 41.70 5.01
2200 2622 2.848858 CGGCAACTGCTTTGTGGCT 61.849 57.895 1.06 0.00 41.70 4.75
2201 2623 1.442987 GGCAACTGCTTTGTGGCTT 59.557 52.632 1.06 0.00 41.70 4.35
2202 2624 0.877213 GGCAACTGCTTTGTGGCTTG 60.877 55.000 1.06 0.00 41.70 4.01
2203 2625 0.877213 GCAACTGCTTTGTGGCTTGG 60.877 55.000 0.00 0.00 37.54 3.61
2204 2626 0.249573 CAACTGCTTTGTGGCTTGGG 60.250 55.000 0.00 0.00 0.00 4.12
2205 2627 0.396974 AACTGCTTTGTGGCTTGGGA 60.397 50.000 0.00 0.00 0.00 4.37
2206 2628 0.396974 ACTGCTTTGTGGCTTGGGAA 60.397 50.000 0.00 0.00 0.00 3.97
2207 2629 0.971386 CTGCTTTGTGGCTTGGGAAT 59.029 50.000 0.00 0.00 0.00 3.01
2208 2630 0.968405 TGCTTTGTGGCTTGGGAATC 59.032 50.000 0.00 0.00 0.00 2.52
2209 2631 1.260544 GCTTTGTGGCTTGGGAATCT 58.739 50.000 0.00 0.00 0.00 2.40
2210 2632 1.067354 GCTTTGTGGCTTGGGAATCTG 60.067 52.381 0.00 0.00 0.00 2.90
2211 2633 2.242043 CTTTGTGGCTTGGGAATCTGT 58.758 47.619 0.00 0.00 0.00 3.41
2212 2634 3.420893 CTTTGTGGCTTGGGAATCTGTA 58.579 45.455 0.00 0.00 0.00 2.74
2213 2635 3.737559 TTGTGGCTTGGGAATCTGTAT 57.262 42.857 0.00 0.00 0.00 2.29
2214 2636 3.003394 TGTGGCTTGGGAATCTGTATG 57.997 47.619 0.00 0.00 0.00 2.39
2215 2637 1.678101 GTGGCTTGGGAATCTGTATGC 59.322 52.381 0.00 0.00 0.00 3.14
2216 2638 1.284491 TGGCTTGGGAATCTGTATGCA 59.716 47.619 0.00 0.00 0.00 3.96
2217 2639 2.291475 TGGCTTGGGAATCTGTATGCAA 60.291 45.455 0.00 0.00 0.00 4.08
2218 2640 2.760092 GGCTTGGGAATCTGTATGCAAA 59.240 45.455 0.00 0.00 0.00 3.68
2219 2641 3.429410 GGCTTGGGAATCTGTATGCAAAC 60.429 47.826 0.00 0.00 0.00 2.93
2220 2642 3.429410 GCTTGGGAATCTGTATGCAAACC 60.429 47.826 0.00 0.00 0.00 3.27
2221 2643 3.737559 TGGGAATCTGTATGCAAACCT 57.262 42.857 0.00 0.00 0.00 3.50
2222 2644 4.853468 TGGGAATCTGTATGCAAACCTA 57.147 40.909 0.00 0.00 0.00 3.08
2223 2645 5.186256 TGGGAATCTGTATGCAAACCTAA 57.814 39.130 0.00 0.00 0.00 2.69
2224 2646 5.575157 TGGGAATCTGTATGCAAACCTAAA 58.425 37.500 0.00 0.00 0.00 1.85
2225 2647 6.194235 TGGGAATCTGTATGCAAACCTAAAT 58.806 36.000 0.00 0.00 0.00 1.40
2226 2648 6.096705 TGGGAATCTGTATGCAAACCTAAATG 59.903 38.462 0.00 0.00 0.00 2.32
2227 2649 6.461509 GGGAATCTGTATGCAAACCTAAATGG 60.462 42.308 0.00 0.00 42.93 3.16
2228 2650 6.461509 GGAATCTGTATGCAAACCTAAATGGG 60.462 42.308 0.00 0.00 41.11 4.00
2229 2651 3.699038 TCTGTATGCAAACCTAAATGGGC 59.301 43.478 0.00 0.00 41.11 5.36
2230 2652 2.763448 TGTATGCAAACCTAAATGGGCC 59.237 45.455 0.00 0.00 41.11 5.80
2231 2653 0.823460 ATGCAAACCTAAATGGGCCG 59.177 50.000 0.00 0.00 41.11 6.13
2232 2654 1.254284 TGCAAACCTAAATGGGCCGG 61.254 55.000 0.00 0.00 41.11 6.13
2233 2655 1.254975 GCAAACCTAAATGGGCCGGT 61.255 55.000 1.90 0.00 41.11 5.28
2234 2656 0.530288 CAAACCTAAATGGGCCGGTG 59.470 55.000 1.90 0.00 41.11 4.94
2235 2657 0.613572 AAACCTAAATGGGCCGGTGG 60.614 55.000 1.90 0.00 41.11 4.61
2247 2669 4.547367 CGGTGGCCTCGGAATCCC 62.547 72.222 3.32 0.00 0.00 3.85
2248 2670 4.191015 GGTGGCCTCGGAATCCCC 62.191 72.222 3.32 0.00 0.00 4.81
2249 2671 3.407967 GTGGCCTCGGAATCCCCA 61.408 66.667 3.32 0.00 34.14 4.96
2250 2672 2.612430 TGGCCTCGGAATCCCCAA 60.612 61.111 3.32 0.00 34.14 4.12
2251 2673 2.124278 GGCCTCGGAATCCCCAAC 60.124 66.667 0.00 0.00 34.14 3.77
2252 2674 2.124278 GCCTCGGAATCCCCAACC 60.124 66.667 0.00 0.00 34.14 3.77
2253 2675 2.680370 GCCTCGGAATCCCCAACCT 61.680 63.158 0.00 0.00 34.14 3.50
2254 2676 1.342672 GCCTCGGAATCCCCAACCTA 61.343 60.000 0.00 0.00 34.14 3.08
2255 2677 0.468648 CCTCGGAATCCCCAACCTAC 59.531 60.000 0.00 0.00 34.14 3.18
2256 2678 1.200519 CTCGGAATCCCCAACCTACA 58.799 55.000 0.00 0.00 34.14 2.74
2257 2679 1.557832 CTCGGAATCCCCAACCTACAA 59.442 52.381 0.00 0.00 34.14 2.41
2258 2680 2.172717 CTCGGAATCCCCAACCTACAAT 59.827 50.000 0.00 0.00 34.14 2.71
2259 2681 2.092646 TCGGAATCCCCAACCTACAATG 60.093 50.000 0.00 0.00 34.14 2.82
2260 2682 2.666317 GGAATCCCCAACCTACAATGG 58.334 52.381 0.00 0.00 36.42 3.16
2261 2683 2.031870 GAATCCCCAACCTACAATGGC 58.968 52.381 0.00 0.00 35.28 4.40
2262 2684 1.308877 ATCCCCAACCTACAATGGCT 58.691 50.000 0.00 0.00 35.28 4.75
2263 2685 0.331278 TCCCCAACCTACAATGGCTG 59.669 55.000 0.00 0.00 35.28 4.85
2264 2686 0.331278 CCCCAACCTACAATGGCTGA 59.669 55.000 0.00 0.00 35.28 4.26
2265 2687 1.272425 CCCCAACCTACAATGGCTGAA 60.272 52.381 0.00 0.00 35.28 3.02
2266 2688 1.818674 CCCAACCTACAATGGCTGAAC 59.181 52.381 0.00 0.00 35.28 3.18
2267 2689 2.513753 CCAACCTACAATGGCTGAACA 58.486 47.619 0.00 0.00 0.00 3.18
2268 2690 2.890311 CCAACCTACAATGGCTGAACAA 59.110 45.455 0.00 0.00 0.00 2.83
2269 2691 3.320541 CCAACCTACAATGGCTGAACAAA 59.679 43.478 0.00 0.00 0.00 2.83
2270 2692 4.021192 CCAACCTACAATGGCTGAACAAAT 60.021 41.667 0.00 0.00 0.00 2.32
2271 2693 5.163513 CAACCTACAATGGCTGAACAAATC 58.836 41.667 0.00 0.00 0.00 2.17
2272 2694 3.763897 ACCTACAATGGCTGAACAAATCC 59.236 43.478 0.00 0.00 0.00 3.01
2273 2695 3.131046 CCTACAATGGCTGAACAAATCCC 59.869 47.826 0.00 0.00 0.00 3.85
2274 2696 2.893424 ACAATGGCTGAACAAATCCCT 58.107 42.857 0.00 0.00 0.00 4.20
2275 2697 2.827921 ACAATGGCTGAACAAATCCCTC 59.172 45.455 0.00 0.00 0.00 4.30
2276 2698 2.149973 ATGGCTGAACAAATCCCTCC 57.850 50.000 0.00 0.00 0.00 4.30
2277 2699 0.776810 TGGCTGAACAAATCCCTCCA 59.223 50.000 0.00 0.00 0.00 3.86
2278 2700 1.272092 TGGCTGAACAAATCCCTCCAG 60.272 52.381 0.00 0.00 0.00 3.86
2279 2701 1.467920 GCTGAACAAATCCCTCCAGG 58.532 55.000 0.00 0.00 0.00 4.45
2280 2702 1.467920 CTGAACAAATCCCTCCAGGC 58.532 55.000 0.00 0.00 34.51 4.85
2281 2703 0.039618 TGAACAAATCCCTCCAGGCC 59.960 55.000 0.00 0.00 34.51 5.19
2282 2704 0.039618 GAACAAATCCCTCCAGGCCA 59.960 55.000 5.01 0.00 34.51 5.36
2283 2705 0.040204 AACAAATCCCTCCAGGCCAG 59.960 55.000 5.01 0.00 34.51 4.85
2284 2706 1.076485 CAAATCCCTCCAGGCCAGG 60.076 63.158 8.15 8.15 34.51 4.45
2285 2707 1.544917 AAATCCCTCCAGGCCAGGT 60.545 57.895 14.79 0.00 34.51 4.00
2286 2708 1.867595 AAATCCCTCCAGGCCAGGTG 61.868 60.000 14.79 11.83 34.51 4.00
2299 2721 4.954970 AGGTGGCCGTGGTTGCAG 62.955 66.667 0.00 0.00 0.00 4.41
2300 2722 4.947147 GGTGGCCGTGGTTGCAGA 62.947 66.667 0.00 0.00 0.00 4.26
2301 2723 2.904866 GTGGCCGTGGTTGCAGAA 60.905 61.111 0.00 0.00 0.00 3.02
2302 2724 2.594303 TGGCCGTGGTTGCAGAAG 60.594 61.111 0.00 0.00 0.00 2.85
2303 2725 2.594592 GGCCGTGGTTGCAGAAGT 60.595 61.111 0.00 0.00 0.00 3.01
2304 2726 1.302192 GGCCGTGGTTGCAGAAGTA 60.302 57.895 0.00 0.00 0.00 2.24
2305 2727 0.676782 GGCCGTGGTTGCAGAAGTAT 60.677 55.000 0.00 0.00 0.00 2.12
2306 2728 0.447801 GCCGTGGTTGCAGAAGTATG 59.552 55.000 0.00 0.00 0.00 2.39
2307 2729 1.943968 GCCGTGGTTGCAGAAGTATGA 60.944 52.381 0.00 0.00 0.00 2.15
2308 2730 1.732259 CCGTGGTTGCAGAAGTATGAC 59.268 52.381 0.00 0.00 0.00 3.06
2309 2731 2.412870 CGTGGTTGCAGAAGTATGACA 58.587 47.619 0.00 0.00 0.00 3.58
2310 2732 2.805671 CGTGGTTGCAGAAGTATGACAA 59.194 45.455 0.00 0.00 0.00 3.18
2311 2733 3.249799 CGTGGTTGCAGAAGTATGACAAA 59.750 43.478 0.00 0.00 0.00 2.83
2312 2734 4.611355 CGTGGTTGCAGAAGTATGACAAAG 60.611 45.833 0.00 0.00 0.00 2.77
2313 2735 4.515191 GTGGTTGCAGAAGTATGACAAAGA 59.485 41.667 0.00 0.00 0.00 2.52
2314 2736 4.515191 TGGTTGCAGAAGTATGACAAAGAC 59.485 41.667 0.00 0.00 0.00 3.01
2315 2737 4.515191 GGTTGCAGAAGTATGACAAAGACA 59.485 41.667 0.00 0.00 0.00 3.41
2316 2738 5.334414 GGTTGCAGAAGTATGACAAAGACAG 60.334 44.000 0.00 0.00 0.00 3.51
2317 2739 4.318332 TGCAGAAGTATGACAAAGACAGG 58.682 43.478 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.564793 TGGTCATAGTAAGAAGTAACATGCAT 58.435 34.615 0.00 0.00 0.00 3.96
51 52 8.443160 ACGTGTTACTGTTCTTGATTTATCATG 58.557 33.333 0.00 0.00 36.56 3.07
69 70 5.801444 AGCTTTTGGTTTTTACACGTGTTAC 59.199 36.000 28.55 18.29 0.00 2.50
70 71 5.800941 CAGCTTTTGGTTTTTACACGTGTTA 59.199 36.000 28.55 16.01 0.00 2.41
139 143 9.720667 CGACATTGATGTGTTATTTGTATTCAT 57.279 29.630 0.57 0.00 41.95 2.57
184 188 8.186178 TCGATTGAGTAATCTCTTTAGTTTGC 57.814 34.615 0.00 0.00 40.43 3.68
497 541 0.109689 CGCCTTCTTCGACGACTTCT 60.110 55.000 0.00 0.00 0.00 2.85
810 854 3.114616 CACACGCTGGGCTTCTCG 61.115 66.667 0.00 0.00 0.00 4.04
1854 1952 3.641017 GCTCTCCAGCCTCTTGTTT 57.359 52.632 0.00 0.00 40.14 2.83
1957 2362 0.107459 AGGGCAGCTTAGCAGTTAGC 60.107 55.000 7.07 2.13 46.19 3.09
1960 2365 0.111253 AACAGGGCAGCTTAGCAGTT 59.889 50.000 7.07 0.00 35.83 3.16
2033 2455 8.385111 ACAATTACGAATGTGAATAAAGGTACG 58.615 33.333 0.00 0.00 0.00 3.67
2062 2484 7.943447 GGTCTTAGATCAAGATAGGTGTACCTA 59.057 40.741 12.85 12.85 44.22 3.08
2075 2497 8.792830 TGTATTTTCTTGGGTCTTAGATCAAG 57.207 34.615 16.48 16.48 38.26 3.02
2120 2542 7.226918 ACGACATATCTTGACGAGAGAATTCTA 59.773 37.037 8.25 0.00 44.56 2.10
2121 2543 6.038825 ACGACATATCTTGACGAGAGAATTCT 59.961 38.462 7.95 7.95 44.56 2.40
2122 2544 6.141527 CACGACATATCTTGACGAGAGAATTC 59.858 42.308 0.00 0.00 44.56 2.17
2123 2545 5.974158 CACGACATATCTTGACGAGAGAATT 59.026 40.000 4.64 0.00 44.56 2.17
2124 2546 5.515184 CACGACATATCTTGACGAGAGAAT 58.485 41.667 4.64 0.00 44.56 2.40
2125 2547 4.730903 GCACGACATATCTTGACGAGAGAA 60.731 45.833 4.64 0.00 44.56 2.87
2126 2548 3.242772 GCACGACATATCTTGACGAGAGA 60.243 47.826 4.64 0.00 44.56 3.10
2127 2549 3.039405 GCACGACATATCTTGACGAGAG 58.961 50.000 4.64 0.00 44.56 3.20
2128 2550 2.223502 GGCACGACATATCTTGACGAGA 60.224 50.000 4.64 0.00 44.56 4.04
2129 2551 2.120232 GGCACGACATATCTTGACGAG 58.880 52.381 4.64 0.00 44.56 4.18
2130 2552 1.749063 AGGCACGACATATCTTGACGA 59.251 47.619 4.64 0.00 44.56 4.20
2131 2553 2.209838 AGGCACGACATATCTTGACG 57.790 50.000 0.00 0.00 46.63 4.35
2132 2554 2.866762 GGAAGGCACGACATATCTTGAC 59.133 50.000 0.00 0.00 32.09 3.18
2133 2555 2.766263 AGGAAGGCACGACATATCTTGA 59.234 45.455 0.00 0.00 0.00 3.02
2134 2556 3.185246 AGGAAGGCACGACATATCTTG 57.815 47.619 0.00 0.00 0.00 3.02
2135 2557 3.914426 AAGGAAGGCACGACATATCTT 57.086 42.857 0.00 0.00 0.00 2.40
2136 2558 3.535561 CAAAGGAAGGCACGACATATCT 58.464 45.455 0.00 0.00 0.00 1.98
2137 2559 2.614057 CCAAAGGAAGGCACGACATATC 59.386 50.000 0.00 0.00 0.00 1.63
2138 2560 2.026262 ACCAAAGGAAGGCACGACATAT 60.026 45.455 0.00 0.00 0.00 1.78
2139 2561 1.349688 ACCAAAGGAAGGCACGACATA 59.650 47.619 0.00 0.00 0.00 2.29
2140 2562 0.110486 ACCAAAGGAAGGCACGACAT 59.890 50.000 0.00 0.00 0.00 3.06
2141 2563 0.817634 CACCAAAGGAAGGCACGACA 60.818 55.000 0.00 0.00 0.00 4.35
2142 2564 0.818040 ACACCAAAGGAAGGCACGAC 60.818 55.000 0.00 0.00 0.00 4.34
2143 2565 0.817634 CACACCAAAGGAAGGCACGA 60.818 55.000 0.00 0.00 0.00 4.35
2144 2566 1.654220 CACACCAAAGGAAGGCACG 59.346 57.895 0.00 0.00 0.00 5.34
2145 2567 0.755327 ACCACACCAAAGGAAGGCAC 60.755 55.000 0.00 0.00 0.00 5.01
2146 2568 0.847373 TACCACACCAAAGGAAGGCA 59.153 50.000 0.00 0.00 0.00 4.75
2147 2569 1.886542 CTTACCACACCAAAGGAAGGC 59.113 52.381 0.00 0.00 0.00 4.35
2148 2570 3.502123 TCTTACCACACCAAAGGAAGG 57.498 47.619 0.00 0.00 0.00 3.46
2149 2571 5.130350 TCTTTCTTACCACACCAAAGGAAG 58.870 41.667 0.00 0.00 37.24 3.46
2150 2572 5.118729 TCTTTCTTACCACACCAAAGGAA 57.881 39.130 0.00 0.00 0.00 3.36
2151 2573 4.781775 TCTTTCTTACCACACCAAAGGA 57.218 40.909 0.00 0.00 0.00 3.36
2152 2574 4.261614 GCTTCTTTCTTACCACACCAAAGG 60.262 45.833 0.00 0.00 0.00 3.11
2153 2575 4.554723 CGCTTCTTTCTTACCACACCAAAG 60.555 45.833 0.00 0.00 0.00 2.77
2154 2576 3.314080 CGCTTCTTTCTTACCACACCAAA 59.686 43.478 0.00 0.00 0.00 3.28
2155 2577 2.875933 CGCTTCTTTCTTACCACACCAA 59.124 45.455 0.00 0.00 0.00 3.67
2156 2578 2.103432 TCGCTTCTTTCTTACCACACCA 59.897 45.455 0.00 0.00 0.00 4.17
2157 2579 2.762745 TCGCTTCTTTCTTACCACACC 58.237 47.619 0.00 0.00 0.00 4.16
2158 2580 3.558418 TGTTCGCTTCTTTCTTACCACAC 59.442 43.478 0.00 0.00 0.00 3.82
2159 2581 3.799366 TGTTCGCTTCTTTCTTACCACA 58.201 40.909 0.00 0.00 0.00 4.17
2160 2582 3.364068 GCTGTTCGCTTCTTTCTTACCAC 60.364 47.826 0.00 0.00 35.14 4.16
2161 2583 2.806244 GCTGTTCGCTTCTTTCTTACCA 59.194 45.455 0.00 0.00 35.14 3.25
2162 2584 2.159827 CGCTGTTCGCTTCTTTCTTACC 60.160 50.000 0.00 0.00 36.13 2.85
2163 2585 2.159827 CCGCTGTTCGCTTCTTTCTTAC 60.160 50.000 0.00 0.00 36.73 2.34
2164 2586 2.066262 CCGCTGTTCGCTTCTTTCTTA 58.934 47.619 0.00 0.00 36.73 2.10
2165 2587 0.868406 CCGCTGTTCGCTTCTTTCTT 59.132 50.000 0.00 0.00 36.73 2.52
2166 2588 1.569479 GCCGCTGTTCGCTTCTTTCT 61.569 55.000 0.00 0.00 36.73 2.52
2167 2589 1.154395 GCCGCTGTTCGCTTCTTTC 60.154 57.895 0.00 0.00 36.73 2.62
2168 2590 1.444119 TTGCCGCTGTTCGCTTCTTT 61.444 50.000 0.00 0.00 36.73 2.52
2169 2591 1.891919 TTGCCGCTGTTCGCTTCTT 60.892 52.632 0.00 0.00 36.73 2.52
2170 2592 2.280797 TTGCCGCTGTTCGCTTCT 60.281 55.556 0.00 0.00 36.73 2.85
2171 2593 2.127232 GTTGCCGCTGTTCGCTTC 60.127 61.111 0.00 0.00 36.73 3.86
2172 2594 2.591715 AGTTGCCGCTGTTCGCTT 60.592 55.556 0.00 0.00 36.73 4.68
2173 2595 3.349006 CAGTTGCCGCTGTTCGCT 61.349 61.111 0.00 0.00 36.73 4.93
2175 2597 2.392613 AAAGCAGTTGCCGCTGTTCG 62.393 55.000 0.00 0.00 43.38 3.95
2176 2598 0.936297 CAAAGCAGTTGCCGCTGTTC 60.936 55.000 0.00 0.00 43.38 3.18
2177 2599 1.066257 CAAAGCAGTTGCCGCTGTT 59.934 52.632 0.00 0.00 43.38 3.16
2178 2600 2.120909 ACAAAGCAGTTGCCGCTGT 61.121 52.632 0.00 0.00 41.31 4.40
2179 2601 1.659335 CACAAAGCAGTTGCCGCTG 60.659 57.895 0.00 0.79 41.31 5.18
2180 2602 2.723746 CACAAAGCAGTTGCCGCT 59.276 55.556 0.00 0.00 41.31 5.52
2181 2603 2.355009 CCACAAAGCAGTTGCCGC 60.355 61.111 0.00 0.00 41.31 6.53
2182 2604 2.354074 AAGCCACAAAGCAGTTGCCG 62.354 55.000 0.00 0.00 41.31 5.69
2183 2605 0.877213 CAAGCCACAAAGCAGTTGCC 60.877 55.000 0.00 0.00 41.31 4.52
2184 2606 0.877213 CCAAGCCACAAAGCAGTTGC 60.877 55.000 0.00 0.00 41.31 4.17
2185 2607 0.249573 CCCAAGCCACAAAGCAGTTG 60.250 55.000 0.00 0.00 43.43 3.16
2186 2608 0.396974 TCCCAAGCCACAAAGCAGTT 60.397 50.000 0.00 0.00 34.23 3.16
2187 2609 0.396974 TTCCCAAGCCACAAAGCAGT 60.397 50.000 0.00 0.00 34.23 4.40
2188 2610 0.971386 ATTCCCAAGCCACAAAGCAG 59.029 50.000 0.00 0.00 34.23 4.24
2189 2611 0.968405 GATTCCCAAGCCACAAAGCA 59.032 50.000 0.00 0.00 34.23 3.91
2190 2612 1.067354 CAGATTCCCAAGCCACAAAGC 60.067 52.381 0.00 0.00 0.00 3.51
2191 2613 2.242043 ACAGATTCCCAAGCCACAAAG 58.758 47.619 0.00 0.00 0.00 2.77
2192 2614 2.380064 ACAGATTCCCAAGCCACAAA 57.620 45.000 0.00 0.00 0.00 2.83
2193 2615 3.355378 CATACAGATTCCCAAGCCACAA 58.645 45.455 0.00 0.00 0.00 3.33
2194 2616 2.945440 GCATACAGATTCCCAAGCCACA 60.945 50.000 0.00 0.00 0.00 4.17
2195 2617 1.678101 GCATACAGATTCCCAAGCCAC 59.322 52.381 0.00 0.00 0.00 5.01
2196 2618 1.284491 TGCATACAGATTCCCAAGCCA 59.716 47.619 0.00 0.00 0.00 4.75
2197 2619 2.057137 TGCATACAGATTCCCAAGCC 57.943 50.000 0.00 0.00 0.00 4.35
2198 2620 3.429410 GGTTTGCATACAGATTCCCAAGC 60.429 47.826 9.57 0.00 0.00 4.01
2199 2621 4.019174 AGGTTTGCATACAGATTCCCAAG 58.981 43.478 9.57 0.00 0.00 3.61
2200 2622 4.046286 AGGTTTGCATACAGATTCCCAA 57.954 40.909 9.57 0.00 0.00 4.12
2201 2623 3.737559 AGGTTTGCATACAGATTCCCA 57.262 42.857 9.57 0.00 0.00 4.37
2202 2624 6.461509 CCATTTAGGTTTGCATACAGATTCCC 60.462 42.308 9.57 0.00 0.00 3.97
2203 2625 6.461509 CCCATTTAGGTTTGCATACAGATTCC 60.462 42.308 9.57 0.00 34.66 3.01
2204 2626 6.507023 CCCATTTAGGTTTGCATACAGATTC 58.493 40.000 9.57 0.00 34.66 2.52
2205 2627 5.163416 GCCCATTTAGGTTTGCATACAGATT 60.163 40.000 9.57 0.00 34.66 2.40
2206 2628 4.342092 GCCCATTTAGGTTTGCATACAGAT 59.658 41.667 9.57 0.00 34.66 2.90
2207 2629 3.699038 GCCCATTTAGGTTTGCATACAGA 59.301 43.478 9.57 0.00 34.66 3.41
2208 2630 3.181476 GGCCCATTTAGGTTTGCATACAG 60.181 47.826 9.57 0.00 34.66 2.74
2209 2631 2.763448 GGCCCATTTAGGTTTGCATACA 59.237 45.455 9.57 0.00 34.66 2.29
2210 2632 2.223711 CGGCCCATTTAGGTTTGCATAC 60.224 50.000 0.00 0.00 34.66 2.39
2211 2633 2.028130 CGGCCCATTTAGGTTTGCATA 58.972 47.619 0.00 0.00 34.66 3.14
2212 2634 0.823460 CGGCCCATTTAGGTTTGCAT 59.177 50.000 0.00 0.00 34.66 3.96
2213 2635 1.254284 CCGGCCCATTTAGGTTTGCA 61.254 55.000 0.00 0.00 34.66 4.08
2214 2636 1.254975 ACCGGCCCATTTAGGTTTGC 61.255 55.000 0.00 0.00 32.17 3.68
2215 2637 0.530288 CACCGGCCCATTTAGGTTTG 59.470 55.000 0.00 0.00 34.25 2.93
2216 2638 0.613572 CCACCGGCCCATTTAGGTTT 60.614 55.000 0.00 0.00 34.25 3.27
2217 2639 1.000145 CCACCGGCCCATTTAGGTT 60.000 57.895 0.00 0.00 34.25 3.50
2218 2640 2.680965 CCACCGGCCCATTTAGGT 59.319 61.111 0.00 0.00 37.49 3.08
2219 2641 2.833121 GCCACCGGCCCATTTAGG 60.833 66.667 0.00 0.00 44.06 2.69
2230 2652 4.547367 GGGATTCCGAGGCCACCG 62.547 72.222 5.01 8.22 0.00 4.94
2231 2653 4.191015 GGGGATTCCGAGGCCACC 62.191 72.222 5.01 0.00 0.00 4.61
2232 2654 2.978946 TTGGGGATTCCGAGGCCAC 61.979 63.158 5.01 0.00 38.76 5.01
2233 2655 2.612430 TTGGGGATTCCGAGGCCA 60.612 61.111 5.01 0.00 38.76 5.36
2234 2656 2.124278 GTTGGGGATTCCGAGGCC 60.124 66.667 0.00 0.00 38.76 5.19
2235 2657 1.342672 TAGGTTGGGGATTCCGAGGC 61.343 60.000 0.00 0.00 38.76 4.70
2236 2658 0.468648 GTAGGTTGGGGATTCCGAGG 59.531 60.000 0.00 0.00 38.76 4.63
2237 2659 1.200519 TGTAGGTTGGGGATTCCGAG 58.799 55.000 0.00 0.00 38.76 4.63
2238 2660 1.659022 TTGTAGGTTGGGGATTCCGA 58.341 50.000 0.00 0.00 38.76 4.55
2239 2661 2.297701 CATTGTAGGTTGGGGATTCCG 58.702 52.381 0.00 0.00 38.76 4.30
2240 2662 2.666317 CCATTGTAGGTTGGGGATTCC 58.334 52.381 0.00 0.00 0.00 3.01
2241 2663 2.031870 GCCATTGTAGGTTGGGGATTC 58.968 52.381 0.00 0.00 33.40 2.52
2242 2664 1.645919 AGCCATTGTAGGTTGGGGATT 59.354 47.619 0.00 0.00 33.40 3.01
2243 2665 1.063717 CAGCCATTGTAGGTTGGGGAT 60.064 52.381 0.00 0.00 36.37 3.85
2244 2666 0.331278 CAGCCATTGTAGGTTGGGGA 59.669 55.000 0.00 0.00 36.37 4.81
2245 2667 0.331278 TCAGCCATTGTAGGTTGGGG 59.669 55.000 0.00 0.00 39.98 4.96
2246 2668 1.818674 GTTCAGCCATTGTAGGTTGGG 59.181 52.381 0.00 0.00 39.98 4.12
2247 2669 2.513753 TGTTCAGCCATTGTAGGTTGG 58.486 47.619 0.00 0.00 39.98 3.77
2248 2670 4.582701 TTTGTTCAGCCATTGTAGGTTG 57.417 40.909 0.00 0.00 40.81 3.77
2249 2671 4.220602 GGATTTGTTCAGCCATTGTAGGTT 59.779 41.667 0.00 0.00 0.00 3.50
2250 2672 3.763897 GGATTTGTTCAGCCATTGTAGGT 59.236 43.478 0.00 0.00 0.00 3.08
2251 2673 3.131046 GGGATTTGTTCAGCCATTGTAGG 59.869 47.826 0.00 0.00 0.00 3.18
2252 2674 4.019174 AGGGATTTGTTCAGCCATTGTAG 58.981 43.478 0.00 0.00 0.00 2.74
2253 2675 4.016444 GAGGGATTTGTTCAGCCATTGTA 58.984 43.478 0.00 0.00 0.00 2.41
2254 2676 2.827921 GAGGGATTTGTTCAGCCATTGT 59.172 45.455 0.00 0.00 0.00 2.71
2255 2677 2.167075 GGAGGGATTTGTTCAGCCATTG 59.833 50.000 0.00 0.00 0.00 2.82
2256 2678 2.225343 TGGAGGGATTTGTTCAGCCATT 60.225 45.455 0.00 0.00 0.00 3.16
2257 2679 1.358787 TGGAGGGATTTGTTCAGCCAT 59.641 47.619 0.00 0.00 0.00 4.40
2258 2680 0.776810 TGGAGGGATTTGTTCAGCCA 59.223 50.000 0.00 0.00 0.00 4.75
2259 2681 1.467920 CTGGAGGGATTTGTTCAGCC 58.532 55.000 0.00 0.00 0.00 4.85
2260 2682 1.467920 CCTGGAGGGATTTGTTCAGC 58.532 55.000 0.00 0.00 37.23 4.26
2261 2683 1.467920 GCCTGGAGGGATTTGTTCAG 58.532 55.000 0.00 0.00 37.23 3.02
2262 2684 0.039618 GGCCTGGAGGGATTTGTTCA 59.960 55.000 0.00 0.00 37.23 3.18
2263 2685 0.039618 TGGCCTGGAGGGATTTGTTC 59.960 55.000 3.32 0.00 37.23 3.18
2264 2686 0.040204 CTGGCCTGGAGGGATTTGTT 59.960 55.000 3.32 0.00 37.23 2.83
2265 2687 1.693640 CTGGCCTGGAGGGATTTGT 59.306 57.895 3.32 0.00 37.23 2.83
2266 2688 1.076485 CCTGGCCTGGAGGGATTTG 60.076 63.158 23.89 0.00 37.23 2.32
2267 2689 1.544917 ACCTGGCCTGGAGGGATTT 60.545 57.895 33.43 7.78 37.23 2.17
2268 2690 2.128226 ACCTGGCCTGGAGGGATT 59.872 61.111 33.43 8.56 37.23 3.01
2269 2691 2.693864 CACCTGGCCTGGAGGGAT 60.694 66.667 33.43 9.33 37.23 3.85
2282 2704 4.954970 CTGCAACCACGGCCACCT 62.955 66.667 2.24 0.00 0.00 4.00
2283 2705 4.947147 TCTGCAACCACGGCCACC 62.947 66.667 2.24 0.00 0.00 4.61
2284 2706 2.904866 TTCTGCAACCACGGCCAC 60.905 61.111 2.24 0.00 0.00 5.01
2285 2707 2.046009 TACTTCTGCAACCACGGCCA 62.046 55.000 2.24 0.00 0.00 5.36
2286 2708 0.676782 ATACTTCTGCAACCACGGCC 60.677 55.000 0.00 0.00 0.00 6.13
2287 2709 0.447801 CATACTTCTGCAACCACGGC 59.552 55.000 0.00 0.00 0.00 5.68
2288 2710 1.732259 GTCATACTTCTGCAACCACGG 59.268 52.381 0.00 0.00 0.00 4.94
2289 2711 2.412870 TGTCATACTTCTGCAACCACG 58.587 47.619 0.00 0.00 0.00 4.94
2290 2712 4.515191 TCTTTGTCATACTTCTGCAACCAC 59.485 41.667 0.00 0.00 0.00 4.16
2291 2713 4.515191 GTCTTTGTCATACTTCTGCAACCA 59.485 41.667 0.00 0.00 0.00 3.67
2292 2714 4.515191 TGTCTTTGTCATACTTCTGCAACC 59.485 41.667 0.00 0.00 0.00 3.77
2293 2715 5.334414 CCTGTCTTTGTCATACTTCTGCAAC 60.334 44.000 0.00 0.00 0.00 4.17
2294 2716 4.756642 CCTGTCTTTGTCATACTTCTGCAA 59.243 41.667 0.00 0.00 0.00 4.08
2295 2717 4.318332 CCTGTCTTTGTCATACTTCTGCA 58.682 43.478 0.00 0.00 0.00 4.41
2296 2718 4.935885 CCTGTCTTTGTCATACTTCTGC 57.064 45.455 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.