Multiple sequence alignment - TraesCS6D01G288300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G288300 chr6D 100.000 4659 0 0 1 4659 398177681 398182339 0.000000e+00 8604.0
1 TraesCS6D01G288300 chr6D 82.749 342 50 7 4149 4487 6772446 6772781 3.520000e-76 296.0
2 TraesCS6D01G288300 chr6A 92.510 1215 64 10 1161 2358 544174775 544175979 0.000000e+00 1714.0
3 TraesCS6D01G288300 chr6A 94.758 744 33 4 2511 3253 544176030 544176768 0.000000e+00 1153.0
4 TraesCS6D01G288300 chr6A 84.298 898 90 26 3476 4354 544177112 544177977 0.000000e+00 830.0
5 TraesCS6D01G288300 chr6A 90.061 493 17 13 648 1120 544173804 544174284 1.110000e-170 610.0
6 TraesCS6D01G288300 chr6A 89.053 338 30 5 253 590 544173257 544173587 3.350000e-111 412.0
7 TraesCS6D01G288300 chr6A 88.263 213 18 1 35 240 544173060 544173272 1.000000e-61 248.0
8 TraesCS6D01G288300 chr6A 87.387 222 16 6 4437 4647 544187593 544187813 1.290000e-60 244.0
9 TraesCS6D01G288300 chr6A 87.952 83 7 3 593 673 544173722 544173803 1.380000e-15 95.3
10 TraesCS6D01G288300 chr6B 92.802 1042 46 11 1225 2248 595227315 595228345 0.000000e+00 1482.0
11 TraesCS6D01G288300 chr6B 87.903 1116 79 30 7 1089 595225675 595226767 0.000000e+00 1262.0
12 TraesCS6D01G288300 chr6B 93.511 786 33 6 2511 3296 595228659 595229426 0.000000e+00 1153.0
13 TraesCS6D01G288300 chr6B 84.279 916 89 22 3481 4385 595229715 595230586 0.000000e+00 843.0
14 TraesCS6D01G288300 chr6B 87.518 713 69 12 2 704 595220797 595221499 0.000000e+00 806.0
15 TraesCS6D01G288300 chr6B 94.891 137 6 1 2345 2480 159990649 159990513 3.650000e-51 213.0
16 TraesCS6D01G288300 chr6B 92.857 126 5 2 2236 2358 595228484 595228608 3.700000e-41 180.0
17 TraesCS6D01G288300 chr6B 100.000 32 0 0 2479 2510 595228605 595228636 5.030000e-05 60.2
18 TraesCS6D01G288300 chr4D 83.367 499 63 8 4178 4659 313930420 313930915 1.190000e-120 444.0
19 TraesCS6D01G288300 chr4D 79.359 562 74 15 4115 4653 509018383 509018925 1.590000e-94 357.0
20 TraesCS6D01G288300 chr2B 80.961 562 91 10 4113 4659 102123513 102122953 9.260000e-117 431.0
21 TraesCS6D01G288300 chr2B 98.462 130 1 1 2354 2482 547962614 547962485 1.300000e-55 228.0
22 TraesCS6D01G288300 chr3D 79.877 487 85 9 4178 4657 475022692 475022212 1.240000e-90 344.0
23 TraesCS6D01G288300 chr3D 79.626 481 65 16 4180 4640 587537031 587537498 9.730000e-82 315.0
24 TraesCS6D01G288300 chr3D 95.652 138 3 3 2345 2480 67064775 67064911 7.850000e-53 219.0
25 TraesCS6D01G288300 chr3D 89.744 117 10 2 1020 1135 132608056 132607941 1.040000e-31 148.0
26 TraesCS6D01G288300 chr7B 78.070 570 84 23 4113 4659 550452237 550452788 5.820000e-84 322.0
27 TraesCS6D01G288300 chr7B 94.815 135 5 2 2347 2480 92205240 92205107 4.720000e-50 209.0
28 TraesCS6D01G288300 chr7B 94.815 135 6 1 2347 2480 385347020 385346886 4.720000e-50 209.0
29 TraesCS6D01G288300 chr7B 95.536 112 5 0 993 1104 111312934 111313045 3.700000e-41 180.0
30 TraesCS6D01G288300 chr7B 87.097 93 12 0 1390 1482 111313326 111313418 6.380000e-19 106.0
31 TraesCS6D01G288300 chr7B 87.952 83 10 0 3014 3096 111315270 111315352 1.070000e-16 99.0
32 TraesCS6D01G288300 chr1A 84.498 329 45 5 4164 4489 16306467 16306792 2.090000e-83 320.0
33 TraesCS6D01G288300 chr1A 96.296 135 3 2 2347 2480 552145792 552145925 2.180000e-53 220.0
34 TraesCS6D01G288300 chr1A 95.402 87 4 0 1021 1107 521331968 521332054 6.290000e-29 139.0
35 TraesCS6D01G288300 chr4B 77.699 565 90 17 4115 4659 149055612 149056160 3.500000e-81 313.0
36 TraesCS6D01G288300 chr4B 100.000 28 0 0 4124 4151 57273675 57273702 8.000000e-03 52.8
37 TraesCS6D01G288300 chr4A 80.939 362 56 7 4300 4650 626649204 626648845 1.650000e-69 274.0
38 TraesCS6D01G288300 chr4A 79.494 395 60 11 4275 4651 665712128 665712519 1.290000e-65 261.0
39 TraesCS6D01G288300 chr2D 80.056 356 61 7 4113 4464 186866929 186866580 5.980000e-64 255.0
40 TraesCS6D01G288300 chr2D 83.810 105 14 1 4496 4600 649382037 649381936 3.840000e-16 97.1
41 TraesCS6D01G288300 chr5B 79.006 362 65 7 4300 4653 335808815 335808457 2.170000e-58 237.0
42 TraesCS6D01G288300 chr5B 96.296 135 3 2 2348 2481 18076956 18077089 2.180000e-53 220.0
43 TraesCS6D01G288300 chr1B 96.269 134 4 1 2348 2481 482450486 482450618 7.850000e-53 219.0
44 TraesCS6D01G288300 chr1B 95.402 87 4 0 1021 1107 575923511 575923597 6.290000e-29 139.0
45 TraesCS6D01G288300 chr3A 95.556 135 5 1 2350 2483 657422648 657422782 1.020000e-51 215.0
46 TraesCS6D01G288300 chr3A 89.744 117 10 2 1020 1135 146395806 146395691 1.040000e-31 148.0
47 TraesCS6D01G288300 chr2A 77.344 384 64 12 4276 4644 207480321 207480696 6.110000e-49 206.0
48 TraesCS6D01G288300 chr3B 89.241 158 10 7 2327 2480 637085530 637085376 1.710000e-44 191.0
49 TraesCS6D01G288300 chr3B 90.351 114 9 2 1020 1132 189159461 189159349 1.040000e-31 148.0
50 TraesCS6D01G288300 chr7D 94.783 115 6 0 993 1107 148148042 148148156 3.700000e-41 180.0
51 TraesCS6D01G288300 chr7D 85.393 89 12 1 3011 3098 148151069 148151157 1.790000e-14 91.6
52 TraesCS6D01G288300 chr1D 76.738 374 55 17 4309 4659 427920759 427920395 3.700000e-41 180.0
53 TraesCS6D01G288300 chr1D 96.552 87 3 0 1021 1107 426404868 426404954 1.350000e-30 145.0
54 TraesCS6D01G288300 chr7A 95.536 112 4 1 996 1107 149303020 149303130 1.330000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G288300 chr6D 398177681 398182339 4658 False 8604.000000 8604 100.000000 1 4659 1 chr6D.!!$F2 4658
1 TraesCS6D01G288300 chr6A 544173060 544177977 4917 False 723.185714 1714 89.556429 35 4354 7 chr6A.!!$F2 4319
2 TraesCS6D01G288300 chr6B 595225675 595230586 4911 False 830.033333 1482 91.892000 7 4385 6 chr6B.!!$F2 4378
3 TraesCS6D01G288300 chr6B 595220797 595221499 702 False 806.000000 806 87.518000 2 704 1 chr6B.!!$F1 702
4 TraesCS6D01G288300 chr4D 509018383 509018925 542 False 357.000000 357 79.359000 4115 4653 1 chr4D.!!$F2 538
5 TraesCS6D01G288300 chr2B 102122953 102123513 560 True 431.000000 431 80.961000 4113 4659 1 chr2B.!!$R1 546
6 TraesCS6D01G288300 chr7B 550452237 550452788 551 False 322.000000 322 78.070000 4113 4659 1 chr7B.!!$F1 546
7 TraesCS6D01G288300 chr4B 149055612 149056160 548 False 313.000000 313 77.699000 4115 4659 1 chr4B.!!$F2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 171 2.096496 CAGCTAGGCCGTTTGATGAAAG 59.904 50.0 0.00 0.0 0.00 2.62 F
1139 1357 0.252742 TTCCTCTCTCCCCCTTCACC 60.253 60.0 0.00 0.0 0.00 4.02 F
2378 3223 0.172803 CCTCCGTCCGGAAGTACTTG 59.827 60.0 14.14 0.0 44.66 3.16 F
2481 3326 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.0 0.00 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2639 0.180406 CCGCCCACCTATAAGCAGTT 59.820 55.0 0.0 0.0 0.0 3.16 R
2462 3307 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.0 0.0 0.0 3.46 R
3612 4651 0.181587 TCCACCGAAGTTCCTGCAAA 59.818 50.0 0.0 0.0 0.0 3.68 R
4162 5206 0.753867 TGTCCACAAACTAGTCGCCA 59.246 50.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.653287 TTGATGATAACTAACGAAGATCAAACT 57.347 29.630 0.00 0.00 30.75 2.66
49 50 3.851976 AACTCTATTATCTAGCCGCCG 57.148 47.619 0.00 0.00 0.00 6.46
51 52 3.947868 ACTCTATTATCTAGCCGCCGTA 58.052 45.455 0.00 0.00 0.00 4.02
66 67 3.183775 CCGCCGTATCTGTTTTACATAGC 59.816 47.826 0.00 0.00 0.00 2.97
72 73 7.115095 GCCGTATCTGTTTTACATAGCTCTAAG 59.885 40.741 0.00 0.00 0.00 2.18
97 98 4.425577 AGCATTTCAGTTCCGCTTTAAG 57.574 40.909 0.00 0.00 0.00 1.85
156 164 2.205074 CTATGTCAGCTAGGCCGTTTG 58.795 52.381 0.00 0.00 0.00 2.93
163 171 2.096496 CAGCTAGGCCGTTTGATGAAAG 59.904 50.000 0.00 0.00 0.00 2.62
367 378 3.128764 TGAGCGTGAGTTACTACATGAGG 59.871 47.826 0.00 0.00 0.00 3.86
391 403 9.408648 AGGATTTAAGAAAACCTACATGTATGG 57.591 33.333 5.91 12.10 29.66 2.74
392 404 8.630037 GGATTTAAGAAAACCTACATGTATGGG 58.370 37.037 19.30 14.88 0.00 4.00
411 423 4.653868 TGGGAACTAATAAAGCGAACCAA 58.346 39.130 0.00 0.00 0.00 3.67
436 448 9.533253 AAAGAAAAGGTGATTGAAAATACACAG 57.467 29.630 0.00 0.00 35.33 3.66
440 452 7.581213 AAGGTGATTGAAAATACACAGAACA 57.419 32.000 0.00 0.00 35.33 3.18
442 454 8.862325 AGGTGATTGAAAATACACAGAACATA 57.138 30.769 0.00 0.00 35.33 2.29
500 512 7.862873 GCTTTAGGGAATCATTCTTTTATTCCG 59.137 37.037 0.00 0.00 46.41 4.30
503 515 9.640952 TTAGGGAATCATTCTTTTATTCCGAAT 57.359 29.630 0.00 0.00 46.41 3.34
515 527 8.447833 TCTTTTATTCCGAATACACATGACAAC 58.552 33.333 0.00 0.00 0.00 3.32
521 534 4.454161 CCGAATACACATGACAACAGGAAA 59.546 41.667 0.00 0.00 0.00 3.13
523 536 6.250819 CGAATACACATGACAACAGGAAATC 58.749 40.000 0.00 0.00 0.00 2.17
524 537 6.092670 CGAATACACATGACAACAGGAAATCT 59.907 38.462 0.00 0.00 0.00 2.40
565 578 9.284594 GCTCGTAGAAATGCTCTATTATCTTAG 57.715 37.037 0.00 0.00 38.91 2.18
639 784 6.662414 ACATCACCACATTTATCAACTACG 57.338 37.500 0.00 0.00 0.00 3.51
641 786 7.324935 ACATCACCACATTTATCAACTACGTA 58.675 34.615 0.00 0.00 0.00 3.57
643 788 6.927416 TCACCACATTTATCAACTACGTACT 58.073 36.000 0.00 0.00 0.00 2.73
644 789 7.031372 TCACCACATTTATCAACTACGTACTC 58.969 38.462 0.00 0.00 0.00 2.59
645 790 6.809689 CACCACATTTATCAACTACGTACTCA 59.190 38.462 0.00 0.00 0.00 3.41
662 834 5.121611 CGTACTCATGTTGCCTGTTGAAATA 59.878 40.000 0.00 0.00 0.00 1.40
967 1182 3.013327 TCCCTCCTCGACCTCCGA 61.013 66.667 0.00 0.00 46.35 4.55
989 1204 2.298158 GAAGGAATCGGAGAGGCGCA 62.298 60.000 10.83 0.00 43.63 6.09
1120 1338 1.238439 CACCGTGAGCACCAAATCTT 58.762 50.000 0.00 0.00 0.00 2.40
1121 1339 1.608590 CACCGTGAGCACCAAATCTTT 59.391 47.619 0.00 0.00 0.00 2.52
1122 1340 1.880027 ACCGTGAGCACCAAATCTTTC 59.120 47.619 0.00 0.00 0.00 2.62
1123 1341 1.200020 CCGTGAGCACCAAATCTTTCC 59.800 52.381 0.00 0.00 0.00 3.13
1124 1342 2.154462 CGTGAGCACCAAATCTTTCCT 58.846 47.619 0.00 0.00 0.00 3.36
1125 1343 2.160417 CGTGAGCACCAAATCTTTCCTC 59.840 50.000 0.00 0.00 0.00 3.71
1126 1344 3.416156 GTGAGCACCAAATCTTTCCTCT 58.584 45.455 0.00 0.00 0.00 3.69
1127 1345 3.438434 GTGAGCACCAAATCTTTCCTCTC 59.562 47.826 0.00 0.00 0.00 3.20
1128 1346 3.328931 TGAGCACCAAATCTTTCCTCTCT 59.671 43.478 0.00 0.00 0.00 3.10
1129 1347 3.938334 GAGCACCAAATCTTTCCTCTCTC 59.062 47.826 0.00 0.00 0.00 3.20
1130 1348 3.013219 GCACCAAATCTTTCCTCTCTCC 58.987 50.000 0.00 0.00 0.00 3.71
1131 1349 3.615155 CACCAAATCTTTCCTCTCTCCC 58.385 50.000 0.00 0.00 0.00 4.30
1132 1350 2.578480 ACCAAATCTTTCCTCTCTCCCC 59.422 50.000 0.00 0.00 0.00 4.81
1133 1351 2.092158 CCAAATCTTTCCTCTCTCCCCC 60.092 54.545 0.00 0.00 0.00 5.40
1134 1352 2.849318 CAAATCTTTCCTCTCTCCCCCT 59.151 50.000 0.00 0.00 0.00 4.79
1135 1353 2.980699 ATCTTTCCTCTCTCCCCCTT 57.019 50.000 0.00 0.00 0.00 3.95
1136 1354 2.255770 TCTTTCCTCTCTCCCCCTTC 57.744 55.000 0.00 0.00 0.00 3.46
1137 1355 1.437149 TCTTTCCTCTCTCCCCCTTCA 59.563 52.381 0.00 0.00 0.00 3.02
1138 1356 1.557371 CTTTCCTCTCTCCCCCTTCAC 59.443 57.143 0.00 0.00 0.00 3.18
1139 1357 0.252742 TTCCTCTCTCCCCCTTCACC 60.253 60.000 0.00 0.00 0.00 4.02
1140 1358 1.690985 CCTCTCTCCCCCTTCACCC 60.691 68.421 0.00 0.00 0.00 4.61
1141 1359 1.394151 CTCTCTCCCCCTTCACCCT 59.606 63.158 0.00 0.00 0.00 4.34
1142 1360 0.252927 CTCTCTCCCCCTTCACCCTT 60.253 60.000 0.00 0.00 0.00 3.95
1143 1361 0.252742 TCTCTCCCCCTTCACCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
1144 1362 0.547712 CTCTCCCCCTTCACCCTTCA 60.548 60.000 0.00 0.00 0.00 3.02
1155 1815 2.283173 CCCTTCACCCCTGTTGCC 60.283 66.667 0.00 0.00 0.00 4.52
1208 1877 6.774656 AGCTTTAGATATGTTCCATTTCAGGG 59.225 38.462 0.00 0.00 0.00 4.45
1251 1920 4.022068 AGTGCTGGTGGTGATTTTGTATTG 60.022 41.667 0.00 0.00 0.00 1.90
1261 1930 7.174253 GTGGTGATTTTGTATTGTTGGAGACTA 59.826 37.037 0.00 0.00 0.00 2.59
1325 1994 0.855349 CTGTGATGGATTAGCGTCGC 59.145 55.000 9.80 9.80 0.00 5.19
1348 2017 0.871722 TGATTTTCCGTCGCACTTGG 59.128 50.000 0.00 0.00 0.00 3.61
1436 2105 1.231221 ATTTCAGCGCAAACGTGGTA 58.769 45.000 11.47 0.00 42.83 3.25
1501 2170 4.709250 GGTAAATCTCACCTCCTGATTCC 58.291 47.826 0.00 0.00 32.98 3.01
1516 2185 2.030893 TGATTCCACTGCTTTCTTTGCG 60.031 45.455 0.00 0.00 0.00 4.85
1520 2189 0.308684 CACTGCTTTCTTTGCGCTGA 59.691 50.000 9.73 1.04 0.00 4.26
1563 2232 0.595825 GTTTTGCCTCAGCTGCACAC 60.596 55.000 9.47 0.00 38.72 3.82
1564 2233 1.036481 TTTTGCCTCAGCTGCACACA 61.036 50.000 9.47 1.38 38.72 3.72
1581 2250 4.618489 GCACACATCACAGTAGCAAATTTC 59.382 41.667 0.00 0.00 0.00 2.17
1586 2255 5.182001 ACATCACAGTAGCAAATTTCACTCC 59.818 40.000 0.00 0.00 0.00 3.85
1587 2256 3.745975 TCACAGTAGCAAATTTCACTCCG 59.254 43.478 0.00 0.00 0.00 4.63
1593 2262 1.529438 GCAAATTTCACTCCGTGACGA 59.471 47.619 6.54 0.00 42.60 4.20
1735 2406 1.611491 AGCCGAGCTAGCTATGAGAAC 59.389 52.381 19.38 1.84 39.29 3.01
1772 2443 4.119862 GCCGAAATGTTCTACTAGCATCA 58.880 43.478 0.00 0.00 0.00 3.07
1795 2469 6.313411 TCATTTGCTTCACTTGTTCCTTTTTG 59.687 34.615 0.00 0.00 0.00 2.44
1821 2507 5.669477 TGGAAAGAGGTTTGAATGTTTTGG 58.331 37.500 0.00 0.00 0.00 3.28
1823 2509 5.396324 GGAAAGAGGTTTGAATGTTTTGGGT 60.396 40.000 0.00 0.00 0.00 4.51
2125 2817 4.752101 GTGGACAGCTTATCATCCATGTAC 59.248 45.833 4.29 0.00 43.02 2.90
2216 2908 7.013274 TGTCTGGTGAAGCTTAATAAATATGGC 59.987 37.037 0.00 0.00 0.00 4.40
2248 2940 1.274167 TCGTTTACGGATTGGACTGCT 59.726 47.619 2.09 0.00 40.29 4.24
2269 3111 5.566016 TGCTTGAAATATCGTGTTTAAACGC 59.434 36.000 19.69 19.69 43.26 4.84
2358 3203 3.626670 TCTGCGTCCTTAACTAGCTACTC 59.373 47.826 0.00 0.00 0.00 2.59
2359 3204 2.686915 TGCGTCCTTAACTAGCTACTCC 59.313 50.000 0.00 0.00 0.00 3.85
2360 3205 2.034432 GCGTCCTTAACTAGCTACTCCC 59.966 54.545 0.00 0.00 0.00 4.30
2361 3206 3.553904 CGTCCTTAACTAGCTACTCCCT 58.446 50.000 0.00 0.00 0.00 4.20
2362 3207 3.565063 CGTCCTTAACTAGCTACTCCCTC 59.435 52.174 0.00 0.00 0.00 4.30
2363 3208 3.890756 GTCCTTAACTAGCTACTCCCTCC 59.109 52.174 0.00 0.00 0.00 4.30
2364 3209 2.885894 CCTTAACTAGCTACTCCCTCCG 59.114 54.545 0.00 0.00 0.00 4.63
2365 3210 3.553904 CTTAACTAGCTACTCCCTCCGT 58.446 50.000 0.00 0.00 0.00 4.69
2366 3211 2.055684 AACTAGCTACTCCCTCCGTC 57.944 55.000 0.00 0.00 0.00 4.79
2367 3212 0.183252 ACTAGCTACTCCCTCCGTCC 59.817 60.000 0.00 0.00 0.00 4.79
2368 3213 0.885596 CTAGCTACTCCCTCCGTCCG 60.886 65.000 0.00 0.00 0.00 4.79
2369 3214 2.335092 TAGCTACTCCCTCCGTCCGG 62.335 65.000 0.00 0.00 0.00 5.14
2370 3215 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2371 3216 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2372 3217 1.077212 TACTCCCTCCGTCCGGAAG 60.077 63.158 5.23 8.49 44.66 3.46
2373 3218 1.856539 TACTCCCTCCGTCCGGAAGT 61.857 60.000 16.46 11.87 44.66 3.01
2374 3219 1.077212 CTCCCTCCGTCCGGAAGTA 60.077 63.158 16.46 0.00 44.66 2.24
2375 3220 1.379044 TCCCTCCGTCCGGAAGTAC 60.379 63.158 16.46 0.00 44.66 2.73
2376 3221 1.379576 CCCTCCGTCCGGAAGTACT 60.380 63.158 16.46 0.00 44.66 2.73
2377 3222 0.969409 CCCTCCGTCCGGAAGTACTT 60.969 60.000 16.46 8.13 44.66 2.24
2378 3223 0.172803 CCTCCGTCCGGAAGTACTTG 59.827 60.000 14.14 0.00 44.66 3.16
2379 3224 0.886563 CTCCGTCCGGAAGTACTTGT 59.113 55.000 14.14 0.00 44.66 3.16
2380 3225 0.883833 TCCGTCCGGAAGTACTTGTC 59.116 55.000 14.14 4.21 42.05 3.18
2381 3226 0.599558 CCGTCCGGAAGTACTTGTCA 59.400 55.000 14.14 0.00 37.50 3.58
2382 3227 1.203994 CCGTCCGGAAGTACTTGTCAT 59.796 52.381 14.14 0.00 37.50 3.06
2383 3228 2.527100 CGTCCGGAAGTACTTGTCATC 58.473 52.381 14.14 0.00 0.00 2.92
2384 3229 2.094906 CGTCCGGAAGTACTTGTCATCA 60.095 50.000 14.14 0.00 0.00 3.07
2385 3230 3.613193 CGTCCGGAAGTACTTGTCATCAA 60.613 47.826 14.14 0.00 0.00 2.57
2386 3231 4.312443 GTCCGGAAGTACTTGTCATCAAA 58.688 43.478 14.14 0.00 32.87 2.69
2387 3232 4.753107 GTCCGGAAGTACTTGTCATCAAAA 59.247 41.667 14.14 0.00 32.87 2.44
2388 3233 5.411669 GTCCGGAAGTACTTGTCATCAAAAT 59.588 40.000 14.14 0.00 32.87 1.82
2389 3234 5.411361 TCCGGAAGTACTTGTCATCAAAATG 59.589 40.000 14.14 0.00 32.87 2.32
2390 3235 5.411361 CCGGAAGTACTTGTCATCAAAATGA 59.589 40.000 14.14 0.00 39.63 2.57
2391 3236 6.072728 CCGGAAGTACTTGTCATCAAAATGAA 60.073 38.462 14.14 0.00 43.42 2.57
2392 3237 7.362056 CCGGAAGTACTTGTCATCAAAATGAAT 60.362 37.037 14.14 0.00 43.42 2.57
2393 3238 8.664798 CGGAAGTACTTGTCATCAAAATGAATA 58.335 33.333 14.14 0.00 43.42 1.75
2400 3245 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
2401 3246 9.880157 CTTGTCATCAAAATGAATAAAAGGGAT 57.120 29.630 0.00 0.00 43.42 3.85
2402 3247 9.656040 TTGTCATCAAAATGAATAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
2403 3248 8.814931 TGTCATCAAAATGAATAAAAGGGATGT 58.185 29.630 0.00 0.00 43.42 3.06
2444 3289 8.794335 AGTTCTAGATACATTCCTTTTTGTCC 57.206 34.615 0.00 0.00 0.00 4.02
2445 3290 8.383175 AGTTCTAGATACATTCCTTTTTGTCCA 58.617 33.333 0.00 0.00 0.00 4.02
2446 3291 9.178758 GTTCTAGATACATTCCTTTTTGTCCAT 57.821 33.333 0.00 0.00 0.00 3.41
2447 3292 9.753674 TTCTAGATACATTCCTTTTTGTCCATT 57.246 29.630 0.00 0.00 0.00 3.16
2448 3293 9.753674 TCTAGATACATTCCTTTTTGTCCATTT 57.246 29.630 0.00 0.00 0.00 2.32
2451 3296 8.869109 AGATACATTCCTTTTTGTCCATTTTGA 58.131 29.630 0.00 0.00 0.00 2.69
2452 3297 9.657419 GATACATTCCTTTTTGTCCATTTTGAT 57.343 29.630 0.00 0.00 0.00 2.57
2453 3298 7.733402 ACATTCCTTTTTGTCCATTTTGATG 57.267 32.000 0.00 0.00 0.00 3.07
2454 3299 7.507829 ACATTCCTTTTTGTCCATTTTGATGA 58.492 30.769 0.00 0.00 0.00 2.92
2455 3300 7.442062 ACATTCCTTTTTGTCCATTTTGATGAC 59.558 33.333 0.00 0.00 0.00 3.06
2456 3301 6.477053 TCCTTTTTGTCCATTTTGATGACA 57.523 33.333 0.00 0.00 0.00 3.58
2457 3302 6.882656 TCCTTTTTGTCCATTTTGATGACAA 58.117 32.000 0.00 0.00 34.47 3.18
2458 3303 6.985645 TCCTTTTTGTCCATTTTGATGACAAG 59.014 34.615 0.00 0.00 37.13 3.16
2459 3304 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
2460 3305 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
2461 3306 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
2462 3307 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
2463 3308 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2464 3309 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
2465 3310 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
2466 3311 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
2467 3312 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
2468 3313 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2469 3314 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2470 3315 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2471 3316 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2472 3317 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2473 3318 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2474 3319 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2475 3320 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2476 3321 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2477 3322 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2478 3323 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2479 3324 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2480 3325 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2481 3326 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
2570 3437 6.761714 AGGCCAACAAGAAATACTATCTAACG 59.238 38.462 5.01 0.00 0.00 3.18
2917 3792 4.335594 GCTCAAAGACACAACAGGTAAAGT 59.664 41.667 0.00 0.00 0.00 2.66
2959 3834 1.026182 CCCTCGCTGCAGCAATTGTA 61.026 55.000 36.03 13.92 42.21 2.41
2991 3866 7.148641 TCAAAGTGTTTGTGTAAGCTGAAAAA 58.851 30.769 0.00 0.00 41.36 1.94
3104 3979 1.583054 AGAAAAAGAAGCAGCGTCGT 58.417 45.000 2.40 0.00 0.00 4.34
3128 4003 7.096023 CGTGGATGCTCTATGATGTAAGTAAAC 60.096 40.741 0.00 0.00 0.00 2.01
3131 4006 7.096023 GGATGCTCTATGATGTAAGTAAACACG 60.096 40.741 0.00 0.00 30.75 4.49
3154 4029 5.052172 CGACACTTGCAGTTTTTCTTCATTG 60.052 40.000 0.00 0.00 0.00 2.82
3155 4030 4.567959 ACACTTGCAGTTTTTCTTCATTGC 59.432 37.500 0.00 0.00 0.00 3.56
3159 4034 4.706035 TGCAGTTTTTCTTCATTGCCATT 58.294 34.783 0.00 0.00 0.00 3.16
3160 4035 5.124645 TGCAGTTTTTCTTCATTGCCATTT 58.875 33.333 0.00 0.00 0.00 2.32
3161 4036 5.589452 TGCAGTTTTTCTTCATTGCCATTTT 59.411 32.000 0.00 0.00 0.00 1.82
3162 4037 6.138088 GCAGTTTTTCTTCATTGCCATTTTC 58.862 36.000 0.00 0.00 0.00 2.29
3213 4089 9.214957 CAGTACTGTAATAGTTGTCATTTTGGA 57.785 33.333 15.06 0.00 40.89 3.53
3234 4110 3.482436 ACATAAGCACGGTCTCCAAAAA 58.518 40.909 0.00 0.00 0.00 1.94
3240 4116 0.179018 ACGGTCTCCAAAAAGCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
3253 4136 2.938956 AGCAGCTTTGACCACTACTT 57.061 45.000 0.00 0.00 0.00 2.24
3254 4137 3.214696 AGCAGCTTTGACCACTACTTT 57.785 42.857 0.00 0.00 0.00 2.66
3255 4138 3.555966 AGCAGCTTTGACCACTACTTTT 58.444 40.909 0.00 0.00 0.00 2.27
3256 4139 3.316308 AGCAGCTTTGACCACTACTTTTG 59.684 43.478 0.00 0.00 0.00 2.44
3257 4140 3.315191 GCAGCTTTGACCACTACTTTTGA 59.685 43.478 0.00 0.00 0.00 2.69
3258 4141 4.789802 GCAGCTTTGACCACTACTTTTGAC 60.790 45.833 0.00 0.00 0.00 3.18
3259 4142 4.576463 CAGCTTTGACCACTACTTTTGACT 59.424 41.667 0.00 0.00 0.00 3.41
3260 4143 5.758296 CAGCTTTGACCACTACTTTTGACTA 59.242 40.000 0.00 0.00 0.00 2.59
3261 4144 6.260050 CAGCTTTGACCACTACTTTTGACTAA 59.740 38.462 0.00 0.00 0.00 2.24
3310 4251 8.504815 GTTCTAAAAGTTTGACTTCCTATGTCC 58.495 37.037 0.00 0.00 37.47 4.02
3311 4252 7.741785 TCTAAAAGTTTGACTTCCTATGTCCA 58.258 34.615 0.00 0.00 37.47 4.02
3317 4258 7.004086 AGTTTGACTTCCTATGTCCAAAATGA 58.996 34.615 0.00 0.00 33.83 2.57
3326 4267 9.898152 TTCCTATGTCCAAAATGAAAAGTTTTT 57.102 25.926 1.64 0.00 0.00 1.94
3404 4345 8.367911 AGAACTATGGCATGATTAATTCGAGTA 58.632 33.333 10.98 0.00 0.00 2.59
3406 4347 8.311650 ACTATGGCATGATTAATTCGAGTAAC 57.688 34.615 10.98 0.00 0.00 2.50
3415 4358 7.463544 TGATTAATTCGAGTAACTGTGCAATG 58.536 34.615 0.00 0.00 0.00 2.82
3416 4359 4.685169 AATTCGAGTAACTGTGCAATGG 57.315 40.909 0.00 0.00 0.00 3.16
3433 4376 6.647212 GCAATGGCAAAATTTACCTAGAAC 57.353 37.500 10.58 0.00 40.72 3.01
3441 4384 7.597369 GGCAAAATTTACCTAGAACGTGAATTT 59.403 33.333 0.00 7.05 39.62 1.82
3475 4418 7.830099 AAAGAAAATCCAGAGTGATTTGAGT 57.170 32.000 0.21 0.00 42.58 3.41
3479 4422 5.762179 AATCCAGAGTGATTTGAGTACCA 57.238 39.130 0.00 0.00 30.88 3.25
3482 4512 7.623999 ATCCAGAGTGATTTGAGTACCATAT 57.376 36.000 0.00 0.00 0.00 1.78
3497 4527 8.268605 TGAGTACCATATTATGTTGCTAAACCA 58.731 33.333 3.10 0.00 35.25 3.67
3507 4537 5.070770 TGTTGCTAAACCATGCATTAAGG 57.929 39.130 0.00 0.00 39.07 2.69
3536 4566 4.226761 GAGGTTGGTTATGCTTTTGTTCG 58.773 43.478 0.00 0.00 0.00 3.95
3546 4576 7.009174 GGTTATGCTTTTGTTCGGAAATGTATG 59.991 37.037 0.00 0.00 0.00 2.39
3553 4583 9.619316 CTTTTGTTCGGAAATGTATGTGAAATA 57.381 29.630 0.00 0.00 0.00 1.40
3560 4590 6.021782 CGGAAATGTATGTGAAATAAACGCAC 60.022 38.462 0.00 0.00 0.00 5.34
3563 4593 7.969387 AATGTATGTGAAATAAACGCACATC 57.031 32.000 10.54 4.89 46.93 3.06
3567 4597 5.619625 TGTGAAATAAACGCACATCATCA 57.380 34.783 0.00 0.00 37.60 3.07
3568 4598 5.630061 TGTGAAATAAACGCACATCATCAG 58.370 37.500 0.00 0.00 37.60 2.90
3572 4602 4.906065 ATAAACGCACATCATCAGCATT 57.094 36.364 0.00 0.00 0.00 3.56
3592 4627 6.366644 CATTTTATGCGTGTTCTGTTTCTG 57.633 37.500 0.00 0.00 0.00 3.02
3596 4631 2.351455 TGCGTGTTCTGTTTCTGAACA 58.649 42.857 14.73 14.73 45.25 3.18
3605 4640 8.633075 TGTTCTGTTTCTGAACATTGAATTTC 57.367 30.769 14.73 0.00 43.60 2.17
3606 4641 8.469200 TGTTCTGTTTCTGAACATTGAATTTCT 58.531 29.630 14.73 0.00 43.60 2.52
3664 4703 6.016527 TGCTATGCTTCAAATCCTGAATGATC 60.017 38.462 0.00 0.00 43.20 2.92
3671 4710 5.443283 TCAAATCCTGAATGATCAAGGAGG 58.557 41.667 17.50 13.65 36.76 4.30
3672 4711 5.044624 TCAAATCCTGAATGATCAAGGAGGT 60.045 40.000 17.50 7.62 36.76 3.85
3673 4712 4.703379 ATCCTGAATGATCAAGGAGGTC 57.297 45.455 17.50 2.87 36.76 3.85
3674 4713 2.774234 TCCTGAATGATCAAGGAGGTCC 59.226 50.000 10.09 0.00 34.49 4.46
3675 4714 2.158696 CCTGAATGATCAAGGAGGTCCC 60.159 54.545 6.10 0.00 34.49 4.46
3684 4723 4.779733 GGAGGTCCCTCAGCCCGA 62.780 72.222 15.01 0.00 44.40 5.14
3685 4724 2.683933 GAGGTCCCTCAGCCCGAA 60.684 66.667 8.49 0.00 42.31 4.30
3686 4725 2.685380 AGGTCCCTCAGCCCGAAG 60.685 66.667 0.00 0.00 0.00 3.79
3687 4726 4.475135 GGTCCCTCAGCCCGAAGC 62.475 72.222 0.00 0.00 44.25 3.86
3697 4736 2.537560 GCCCGAAGCGACATCATGG 61.538 63.158 0.00 0.00 0.00 3.66
3698 4737 1.889105 CCCGAAGCGACATCATGGG 60.889 63.158 0.00 0.00 0.00 4.00
3699 4738 1.153369 CCGAAGCGACATCATGGGT 60.153 57.895 0.00 0.00 0.00 4.51
3700 4739 1.431488 CCGAAGCGACATCATGGGTG 61.431 60.000 0.00 0.00 0.00 4.61
3701 4740 1.723870 GAAGCGACATCATGGGTGC 59.276 57.895 0.00 0.00 0.00 5.01
3702 4741 2.040213 GAAGCGACATCATGGGTGCG 62.040 60.000 0.00 2.76 0.00 5.34
3703 4742 4.241999 GCGACATCATGGGTGCGC 62.242 66.667 0.00 0.00 35.95 6.09
3704 4743 3.576356 CGACATCATGGGTGCGCC 61.576 66.667 8.12 8.12 0.00 6.53
3724 4763 1.723870 GAAGCGACATCATGGGTGC 59.276 57.895 0.00 0.00 0.00 5.01
3727 4766 3.928769 CGACATCATGGGTGCGCG 61.929 66.667 0.00 0.00 0.00 6.86
3774 4813 0.098200 CACTGGATGTGCTGATTGCG 59.902 55.000 0.00 0.00 46.63 4.85
3797 4836 5.280945 GCGGTCAATGTGTATATTTGCATT 58.719 37.500 0.00 0.00 32.48 3.56
4032 5073 5.240623 ACAGCAACATTGAAATCTTACGGAA 59.759 36.000 0.00 0.00 0.00 4.30
4089 5130 3.264897 CATGCGACGCTGGTAGCC 61.265 66.667 22.08 0.00 43.25 3.93
4118 5162 4.524328 GGCATATTCCTCAACAATAAGGGG 59.476 45.833 0.00 0.00 33.21 4.79
4157 5201 0.879090 AAATTTTCTCCCGTGTCCGC 59.121 50.000 0.00 0.00 0.00 5.54
4158 5202 0.250553 AATTTTCTCCCGTGTCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
4162 5206 3.374402 CTCCCGTGTCCGCAGACT 61.374 66.667 1.05 0.00 43.91 3.24
4187 5237 3.119743 CGACTAGTTTGTGGACACGGATA 60.120 47.826 0.00 0.00 0.00 2.59
4206 5256 4.115199 GGGAGGCCGCTGTCCAAT 62.115 66.667 6.40 0.00 34.14 3.16
4216 5266 2.202690 TGTCCAATCGTAGCCGCG 60.203 61.111 0.00 0.00 0.00 6.46
4254 5304 9.258826 CACATTTTCAACAAACTGGATGAAATA 57.741 29.630 9.32 4.21 37.25 1.40
4256 5306 7.922505 TTTTCAACAAACTGGATGAAATACG 57.077 32.000 9.32 0.00 37.25 3.06
4288 5338 7.095229 ACACGATCGGATTTCATATAAACATGG 60.095 37.037 20.98 0.00 0.00 3.66
4295 5345 8.233868 CGGATTTCATATAAACATGGCGAATTA 58.766 33.333 0.00 0.00 0.00 1.40
4402 5455 2.640184 TCACTCTCACGACACGGATAT 58.360 47.619 0.00 0.00 0.00 1.63
4421 5474 6.509199 CGGATATACTACATTAGTCTACGGCG 60.509 46.154 4.80 4.80 40.14 6.46
4512 5576 5.394883 GGAACACCGTATCTTTCCTATGTCA 60.395 44.000 0.00 0.00 35.56 3.58
4547 5611 1.303643 GGAGTGGCAAAGAGGGTGG 60.304 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.751060 TCGTTAGTTATCATCAAAGCGGT 58.249 39.130 0.00 0.00 0.00 5.68
2 3 6.569228 TCTTCGTTAGTTATCATCAAAGCG 57.431 37.500 0.00 0.00 0.00 4.68
3 4 8.131455 TGATCTTCGTTAGTTATCATCAAAGC 57.869 34.615 0.00 0.00 0.00 3.51
32 33 4.575236 CAGATACGGCGGCTAGATAATAGA 59.425 45.833 13.24 0.00 0.00 1.98
66 67 5.006165 CGGAACTGAAATGCTAAGCTTAGAG 59.994 44.000 32.88 22.29 32.47 2.43
72 73 1.740025 AGCGGAACTGAAATGCTAAGC 59.260 47.619 0.00 0.00 33.37 3.09
97 98 4.620184 GTCGTTCATAGTATAATGACCGCC 59.380 45.833 0.82 0.00 40.39 6.13
100 101 9.740239 TTAGTTGTCGTTCATAGTATAATGACC 57.260 33.333 15.02 7.12 39.71 4.02
139 147 0.613260 ATCAAACGGCCTAGCTGACA 59.387 50.000 0.00 0.00 38.46 3.58
156 164 5.013236 CACGTTATTGTGCGTACTTTCATC 58.987 41.667 4.97 0.00 39.48 2.92
163 171 3.984018 ATGACACGTTATTGTGCGTAC 57.016 42.857 0.00 0.00 43.74 3.67
350 361 9.871238 TTCTTAAATCCTCATGTAGTAACTCAC 57.129 33.333 0.00 0.00 0.00 3.51
357 368 9.668497 GTAGGTTTTCTTAAATCCTCATGTAGT 57.332 33.333 5.49 0.00 31.56 2.73
367 378 9.403583 TCCCATACATGTAGGTTTTCTTAAATC 57.596 33.333 15.78 0.00 0.00 2.17
391 403 6.490566 TCTTTGGTTCGCTTTATTAGTTCC 57.509 37.500 0.00 0.00 0.00 3.62
392 404 8.791355 TTTTCTTTGGTTCGCTTTATTAGTTC 57.209 30.769 0.00 0.00 0.00 3.01
411 423 8.912988 TCTGTGTATTTTCAATCACCTTTTCTT 58.087 29.630 0.00 0.00 0.00 2.52
436 448 7.067532 TGTATGATCCGTGTGTTTTATGTTC 57.932 36.000 0.00 0.00 0.00 3.18
442 454 9.554395 TGATATTATGTATGATCCGTGTGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
500 512 7.383102 AGATTTCCTGTTGTCATGTGTATTC 57.617 36.000 0.00 0.00 0.00 1.75
503 515 7.581213 AAAAGATTTCCTGTTGTCATGTGTA 57.419 32.000 0.00 0.00 0.00 2.90
534 547 7.559590 AATAGAGCATTTCTACGAGCAAAAT 57.440 32.000 0.00 0.00 41.10 1.82
565 578 4.004196 ACTTTGAGGCCTGTTGTAGTAC 57.996 45.455 12.00 0.00 0.00 2.73
578 591 6.780457 ATGTGAAATTGGGATACTTTGAGG 57.220 37.500 0.00 0.00 0.00 3.86
639 784 4.829064 TTTCAACAGGCAACATGAGTAC 57.171 40.909 0.00 0.00 41.41 2.73
641 786 4.083324 CGTATTTCAACAGGCAACATGAGT 60.083 41.667 0.00 0.00 41.41 3.41
643 788 3.818210 ACGTATTTCAACAGGCAACATGA 59.182 39.130 0.00 0.00 41.41 3.07
644 789 4.159377 ACGTATTTCAACAGGCAACATG 57.841 40.909 0.00 0.00 41.41 3.21
645 790 6.237996 CGTATACGTATTTCAACAGGCAACAT 60.238 38.462 17.16 0.00 34.49 2.71
762 953 4.040198 AACCCCTCCCTCCTCCCC 62.040 72.222 0.00 0.00 0.00 4.81
763 954 2.692741 CAACCCCTCCCTCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
764 955 2.692741 CCAACCCCTCCCTCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
765 956 1.996187 GACCAACCCCTCCCTCCTC 60.996 68.421 0.00 0.00 0.00 3.71
766 957 2.125225 GACCAACCCCTCCCTCCT 59.875 66.667 0.00 0.00 0.00 3.69
943 1158 4.075793 TCGAGGAGGGAGTGGGGG 62.076 72.222 0.00 0.00 0.00 5.40
944 1159 2.760385 GTCGAGGAGGGAGTGGGG 60.760 72.222 0.00 0.00 0.00 4.96
947 1162 1.755008 GGAGGTCGAGGAGGGAGTG 60.755 68.421 0.00 0.00 0.00 3.51
948 1163 2.684735 GGAGGTCGAGGAGGGAGT 59.315 66.667 0.00 0.00 0.00 3.85
949 1164 2.517402 CGGAGGTCGAGGAGGGAG 60.517 72.222 0.00 0.00 42.43 4.30
950 1165 3.013327 TCGGAGGTCGAGGAGGGA 61.013 66.667 0.00 0.00 43.74 4.20
967 1182 1.051556 GCCTCTCCGATTCCTTCCCT 61.052 60.000 0.00 0.00 0.00 4.20
1120 1338 0.252742 GGTGAAGGGGGAGAGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
1121 1339 1.392534 GGTGAAGGGGGAGAGAGGA 59.607 63.158 0.00 0.00 0.00 3.71
1122 1340 1.690985 GGGTGAAGGGGGAGAGAGG 60.691 68.421 0.00 0.00 0.00 3.69
1123 1341 0.252927 AAGGGTGAAGGGGGAGAGAG 60.253 60.000 0.00 0.00 0.00 3.20
1124 1342 0.252742 GAAGGGTGAAGGGGGAGAGA 60.253 60.000 0.00 0.00 0.00 3.10
1125 1343 0.547712 TGAAGGGTGAAGGGGGAGAG 60.548 60.000 0.00 0.00 0.00 3.20
1126 1344 0.840722 GTGAAGGGTGAAGGGGGAGA 60.841 60.000 0.00 0.00 0.00 3.71
1127 1345 1.685820 GTGAAGGGTGAAGGGGGAG 59.314 63.158 0.00 0.00 0.00 4.30
1128 1346 1.850755 GGTGAAGGGTGAAGGGGGA 60.851 63.158 0.00 0.00 0.00 4.81
1129 1347 2.763902 GGTGAAGGGTGAAGGGGG 59.236 66.667 0.00 0.00 0.00 5.40
1130 1348 2.763902 GGGTGAAGGGTGAAGGGG 59.236 66.667 0.00 0.00 0.00 4.79
1131 1349 1.852626 AGGGGTGAAGGGTGAAGGG 60.853 63.158 0.00 0.00 0.00 3.95
1132 1350 1.380302 CAGGGGTGAAGGGTGAAGG 59.620 63.158 0.00 0.00 0.00 3.46
1133 1351 0.478507 AACAGGGGTGAAGGGTGAAG 59.521 55.000 0.00 0.00 0.00 3.02
1134 1352 0.184933 CAACAGGGGTGAAGGGTGAA 59.815 55.000 0.00 0.00 0.00 3.18
1135 1353 1.843421 CAACAGGGGTGAAGGGTGA 59.157 57.895 0.00 0.00 0.00 4.02
1136 1354 1.903404 GCAACAGGGGTGAAGGGTG 60.903 63.158 0.00 0.00 0.00 4.61
1137 1355 2.520968 GCAACAGGGGTGAAGGGT 59.479 61.111 0.00 0.00 0.00 4.34
1138 1356 2.283173 GGCAACAGGGGTGAAGGG 60.283 66.667 0.00 0.00 0.00 3.95
1139 1357 2.672996 CGGCAACAGGGGTGAAGG 60.673 66.667 0.00 0.00 0.00 3.46
1140 1358 3.365265 GCGGCAACAGGGGTGAAG 61.365 66.667 0.00 0.00 0.00 3.02
1231 1900 4.519540 ACAATACAAAATCACCACCAGC 57.480 40.909 0.00 0.00 0.00 4.85
1251 1920 4.072131 TCCTTTGCACAATAGTCTCCAAC 58.928 43.478 0.00 0.00 0.00 3.77
1261 1930 3.509442 TGGGAAAGATCCTTTGCACAAT 58.491 40.909 11.87 0.00 45.77 2.71
1338 2007 1.525077 TTGGTGTCCCAAGTGCGAC 60.525 57.895 0.00 0.00 45.93 5.19
1348 2017 6.642540 GTCAGAAAATTGAGAAATTGGTGTCC 59.357 38.462 0.00 0.00 0.00 4.02
1501 2170 0.308684 TCAGCGCAAAGAAAGCAGTG 59.691 50.000 11.47 0.00 0.00 3.66
1516 2185 1.067516 ACAAACCACAGTTGCATCAGC 59.932 47.619 0.00 0.00 35.97 4.26
1520 2189 2.944129 ACCTACAAACCACAGTTGCAT 58.056 42.857 0.00 0.00 35.97 3.96
1525 2194 5.731957 AAACAAAACCTACAAACCACAGT 57.268 34.783 0.00 0.00 0.00 3.55
1563 2232 5.634896 GGAGTGAAATTTGCTACTGTGATG 58.365 41.667 0.00 0.00 0.00 3.07
1564 2233 4.393062 CGGAGTGAAATTTGCTACTGTGAT 59.607 41.667 0.00 0.00 0.00 3.06
1586 2255 5.079406 CAGTTACCAAATGAATTCGTCACG 58.921 41.667 0.00 0.00 39.72 4.35
1587 2256 5.390613 CCAGTTACCAAATGAATTCGTCAC 58.609 41.667 0.00 0.00 39.72 3.67
1593 2262 3.769300 GCTCCCCAGTTACCAAATGAATT 59.231 43.478 0.00 0.00 0.00 2.17
1687 2358 2.119457 GAGAAGGCAAGCACAAAAACG 58.881 47.619 0.00 0.00 0.00 3.60
1735 2406 2.028420 TCGGCACCTTCTTCATGATG 57.972 50.000 0.00 0.00 0.00 3.07
1772 2443 6.172630 ACAAAAAGGAACAAGTGAAGCAAAT 58.827 32.000 0.00 0.00 0.00 2.32
1777 2448 6.162777 TCCAAACAAAAAGGAACAAGTGAAG 58.837 36.000 0.00 0.00 0.00 3.02
1778 2449 6.102897 TCCAAACAAAAAGGAACAAGTGAA 57.897 33.333 0.00 0.00 0.00 3.18
1779 2450 5.730296 TCCAAACAAAAAGGAACAAGTGA 57.270 34.783 0.00 0.00 0.00 3.41
1780 2451 6.648725 TCTTTCCAAACAAAAAGGAACAAGTG 59.351 34.615 0.00 0.00 40.88 3.16
1795 2469 7.413988 CCAAAACATTCAAACCTCTTTCCAAAC 60.414 37.037 0.00 0.00 0.00 2.93
1821 2507 4.188462 CTGAAAGGGGAAACAACAAAACC 58.812 43.478 0.00 0.00 0.00 3.27
1823 2509 4.826556 CACTGAAAGGGGAAACAACAAAA 58.173 39.130 0.00 0.00 39.30 2.44
1950 2636 2.159014 CGCCCACCTATAAGCAGTTACA 60.159 50.000 0.00 0.00 0.00 2.41
1951 2637 2.480845 CGCCCACCTATAAGCAGTTAC 58.519 52.381 0.00 0.00 0.00 2.50
1952 2638 1.414919 CCGCCCACCTATAAGCAGTTA 59.585 52.381 0.00 0.00 0.00 2.24
1953 2639 0.180406 CCGCCCACCTATAAGCAGTT 59.820 55.000 0.00 0.00 0.00 3.16
1954 2640 0.981277 ACCGCCCACCTATAAGCAGT 60.981 55.000 0.00 0.00 0.00 4.40
2216 2908 2.096417 CCGTAAACGACCTCAAAGCTTG 60.096 50.000 0.00 0.00 43.02 4.01
2248 2940 9.608617 TTATTGCGTTTAAACACGATATTTCAA 57.391 25.926 18.07 5.21 43.15 2.69
2269 3111 8.600625 CAATCATGGCAGAGTTTTTCATTATTG 58.399 33.333 0.00 0.00 0.00 1.90
2358 3203 0.969409 AAGTACTTCCGGACGGAGGG 60.969 60.000 23.78 17.53 46.06 4.30
2359 3204 0.172803 CAAGTACTTCCGGACGGAGG 59.827 60.000 19.51 19.51 46.06 4.30
2360 3205 0.886563 ACAAGTACTTCCGGACGGAG 59.113 55.000 13.17 6.49 46.06 4.63
2361 3206 0.883833 GACAAGTACTTCCGGACGGA 59.116 55.000 13.17 9.76 43.52 4.69
2362 3207 0.599558 TGACAAGTACTTCCGGACGG 59.400 55.000 13.17 3.96 0.00 4.79
2363 3208 2.094906 TGATGACAAGTACTTCCGGACG 60.095 50.000 1.83 4.48 0.00 4.79
2364 3209 3.587797 TGATGACAAGTACTTCCGGAC 57.412 47.619 1.83 0.00 0.00 4.79
2365 3210 4.610605 TTTGATGACAAGTACTTCCGGA 57.389 40.909 4.77 0.00 37.32 5.14
2366 3211 5.411361 TCATTTTGATGACAAGTACTTCCGG 59.589 40.000 4.77 0.00 37.32 5.14
2367 3212 6.480524 TCATTTTGATGACAAGTACTTCCG 57.519 37.500 4.77 0.00 37.32 4.30
2374 3219 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
2375 3220 9.880157 ATCCCTTTTATTCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
2376 3221 9.656040 CATCCCTTTTATTCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
2377 3222 8.814931 ACATCCCTTTTATTCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
2418 3263 9.886132 GGACAAAAAGGAATGTATCTAGAACTA 57.114 33.333 0.00 0.00 0.00 2.24
2419 3264 8.383175 TGGACAAAAAGGAATGTATCTAGAACT 58.617 33.333 0.00 0.00 0.00 3.01
2420 3265 8.561738 TGGACAAAAAGGAATGTATCTAGAAC 57.438 34.615 0.00 0.00 0.00 3.01
2421 3266 9.753674 AATGGACAAAAAGGAATGTATCTAGAA 57.246 29.630 0.00 0.00 0.00 2.10
2422 3267 9.753674 AAATGGACAAAAAGGAATGTATCTAGA 57.246 29.630 0.00 0.00 0.00 2.43
2425 3270 8.869109 TCAAAATGGACAAAAAGGAATGTATCT 58.131 29.630 0.00 0.00 0.00 1.98
2426 3271 9.657419 ATCAAAATGGACAAAAAGGAATGTATC 57.343 29.630 0.00 0.00 0.00 2.24
2427 3272 9.439500 CATCAAAATGGACAAAAAGGAATGTAT 57.561 29.630 0.00 0.00 0.00 2.29
2428 3273 8.646004 TCATCAAAATGGACAAAAAGGAATGTA 58.354 29.630 0.00 0.00 33.42 2.29
2429 3274 7.442062 GTCATCAAAATGGACAAAAAGGAATGT 59.558 33.333 0.00 0.00 33.42 2.71
2430 3275 7.441760 TGTCATCAAAATGGACAAAAAGGAATG 59.558 33.333 0.00 0.00 33.42 2.67
2431 3276 7.507829 TGTCATCAAAATGGACAAAAAGGAAT 58.492 30.769 0.00 0.00 33.42 3.01
2432 3277 6.882656 TGTCATCAAAATGGACAAAAAGGAA 58.117 32.000 0.00 0.00 33.42 3.36
2433 3278 6.477053 TGTCATCAAAATGGACAAAAAGGA 57.523 33.333 0.00 0.00 33.42 3.36
2434 3279 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
2435 3280 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
2436 3281 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
2437 3282 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2438 3283 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
2439 3284 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
2440 3285 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
2441 3286 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
2442 3287 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2443 3288 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2444 3289 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2445 3290 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2446 3291 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2447 3292 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2448 3293 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2449 3294 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2450 3295 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2451 3296 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2452 3297 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2453 3298 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2454 3299 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2455 3300 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2456 3301 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2457 3302 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2458 3303 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2459 3304 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2460 3305 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2461 3306 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2462 3307 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2463 3308 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2464 3309 0.038744 AAAGTACTCCCTCCGTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
2465 3310 0.455005 GAAAGTACTCCCTCCGTCCG 59.545 60.000 0.00 0.00 0.00 4.79
2466 3311 1.477295 CAGAAAGTACTCCCTCCGTCC 59.523 57.143 0.00 0.00 0.00 4.79
2467 3312 2.094649 CACAGAAAGTACTCCCTCCGTC 60.095 54.545 0.00 0.00 0.00 4.79
2468 3313 1.893801 CACAGAAAGTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
2469 3314 2.164624 CTCACAGAAAGTACTCCCTCCG 59.835 54.545 0.00 0.00 0.00 4.63
2470 3315 3.432378 TCTCACAGAAAGTACTCCCTCC 58.568 50.000 0.00 0.00 0.00 4.30
2471 3316 5.669164 AATCTCACAGAAAGTACTCCCTC 57.331 43.478 0.00 0.00 0.00 4.30
2472 3317 7.400339 TGATTAATCTCACAGAAAGTACTCCCT 59.600 37.037 16.24 0.00 0.00 4.20
2473 3318 7.556844 TGATTAATCTCACAGAAAGTACTCCC 58.443 38.462 16.24 0.00 0.00 4.30
2629 3504 4.002982 ACGAAGATCTGCAAGCAACATTA 58.997 39.130 0.51 0.00 0.00 1.90
2630 3505 2.816087 ACGAAGATCTGCAAGCAACATT 59.184 40.909 0.51 0.00 0.00 2.71
2631 3506 2.161012 CACGAAGATCTGCAAGCAACAT 59.839 45.455 0.51 0.00 0.00 2.71
2632 3507 1.532437 CACGAAGATCTGCAAGCAACA 59.468 47.619 0.51 0.00 0.00 3.33
2633 3508 1.800586 TCACGAAGATCTGCAAGCAAC 59.199 47.619 0.51 0.00 0.00 4.17
2634 3509 2.168326 TCACGAAGATCTGCAAGCAA 57.832 45.000 0.51 0.00 0.00 3.91
2635 3510 2.071540 CTTCACGAAGATCTGCAAGCA 58.928 47.619 0.51 0.00 40.79 3.91
2636 3511 2.341257 TCTTCACGAAGATCTGCAAGC 58.659 47.619 5.38 0.00 42.06 4.01
2917 3792 6.430000 GGGCATACAGTTCTCTTACAGAAAAA 59.570 38.462 0.00 0.00 43.10 1.94
2959 3834 7.067494 AGCTTACACAAACACTTTGAAGAAGAT 59.933 33.333 1.75 0.00 43.26 2.40
2991 3866 9.618890 ATTCTACATATTGCACAAGTGTAAGAT 57.381 29.630 9.45 7.47 37.54 2.40
3095 3970 2.613739 TAGAGCATCCACGACGCTGC 62.614 60.000 0.00 0.00 28.87 5.25
3104 3979 7.710907 GTGTTTACTTACATCATAGAGCATCCA 59.289 37.037 0.00 0.00 33.66 3.41
3110 3985 7.968956 AGTGTCGTGTTTACTTACATCATAGAG 59.031 37.037 0.00 0.00 0.00 2.43
3173 4048 7.652757 TTACAGTACTGGAGGGGAGTATATA 57.347 40.000 26.12 2.63 34.19 0.86
3181 4057 4.715297 ACAACTATTACAGTACTGGAGGGG 59.285 45.833 26.12 14.89 36.04 4.79
3213 4089 2.851263 TTTGGAGACCGTGCTTATGT 57.149 45.000 0.00 0.00 0.00 2.29
3234 4110 2.938956 AAGTAGTGGTCAAAGCTGCT 57.061 45.000 0.00 0.00 0.00 4.24
3285 4226 8.215050 TGGACATAGGAAGTCAAACTTTTAGAA 58.785 33.333 0.00 0.00 38.80 2.10
3289 4230 7.654022 TTTGGACATAGGAAGTCAAACTTTT 57.346 32.000 0.00 0.00 38.80 2.27
3297 4238 7.886338 ACTTTTCATTTTGGACATAGGAAGTC 58.114 34.615 0.00 0.00 35.29 3.01
3339 4280 9.794719 AAAATAGCTTTAGAACTTGGTTACTCT 57.205 29.630 0.00 0.00 0.00 3.24
3370 4311 7.698506 AATCATGCCATAGTTCTATGAATGG 57.301 36.000 18.03 7.85 41.55 3.16
3382 4323 8.438513 CAGTTACTCGAATTAATCATGCCATAG 58.561 37.037 0.00 0.00 0.00 2.23
3384 4325 6.767902 ACAGTTACTCGAATTAATCATGCCAT 59.232 34.615 0.00 0.00 0.00 4.40
3399 4340 1.155889 TGCCATTGCACAGTTACTCG 58.844 50.000 0.00 0.00 44.23 4.18
3415 4358 5.616488 TCACGTTCTAGGTAAATTTTGCC 57.384 39.130 8.09 8.09 35.41 4.52
3416 4359 8.515473 AAATTCACGTTCTAGGTAAATTTTGC 57.485 30.769 0.00 0.00 0.00 3.68
3449 4392 9.525826 ACTCAAATCACTCTGGATTTTCTTTAT 57.474 29.630 0.00 0.00 43.13 1.40
3450 4393 8.924511 ACTCAAATCACTCTGGATTTTCTTTA 57.075 30.769 0.00 0.00 43.13 1.85
3454 4397 6.655003 TGGTACTCAAATCACTCTGGATTTTC 59.345 38.462 0.00 0.00 43.13 2.29
3475 4418 7.503902 TGCATGGTTTAGCAACATAATATGGTA 59.496 33.333 5.16 0.00 37.90 3.25
3482 4512 7.264221 CCTTAATGCATGGTTTAGCAACATAA 58.736 34.615 0.00 0.00 44.88 1.90
3507 4537 2.493278 AGCATAACCAACCTCAACATGC 59.507 45.455 0.00 0.00 38.02 4.06
3536 4566 6.804295 TGTGCGTTTATTTCACATACATTTCC 59.196 34.615 0.00 0.00 35.99 3.13
3546 4576 4.496895 GCTGATGATGTGCGTTTATTTCAC 59.503 41.667 0.00 0.00 0.00 3.18
3553 4583 3.581024 AAATGCTGATGATGTGCGTTT 57.419 38.095 0.00 0.00 39.95 3.60
3572 4602 5.507077 GTTCAGAAACAGAACACGCATAAA 58.493 37.500 0.00 0.00 43.64 1.40
3592 4627 9.801714 CTGCAAATGTAAAGAAATTCAATGTTC 57.198 29.630 0.00 0.00 0.00 3.18
3596 4631 8.992073 GTTCCTGCAAATGTAAAGAAATTCAAT 58.008 29.630 0.00 0.00 0.00 2.57
3605 4640 4.023193 ACCGAAGTTCCTGCAAATGTAAAG 60.023 41.667 0.00 0.00 0.00 1.85
3606 4641 3.886505 ACCGAAGTTCCTGCAAATGTAAA 59.113 39.130 0.00 0.00 0.00 2.01
3612 4651 0.181587 TCCACCGAAGTTCCTGCAAA 59.818 50.000 0.00 0.00 0.00 3.68
3671 4710 4.821589 CGCTTCGGGCTGAGGGAC 62.822 72.222 7.62 0.00 39.13 4.46
3673 4712 4.821589 GTCGCTTCGGGCTGAGGG 62.822 72.222 7.62 5.68 39.13 4.30
3674 4713 3.376935 ATGTCGCTTCGGGCTGAGG 62.377 63.158 0.22 0.22 39.13 3.86
3675 4714 1.880340 GATGTCGCTTCGGGCTGAG 60.880 63.158 0.00 0.00 39.13 3.35
3676 4715 1.960040 ATGATGTCGCTTCGGGCTGA 61.960 55.000 0.00 0.00 39.13 4.26
3677 4716 1.522355 ATGATGTCGCTTCGGGCTG 60.522 57.895 0.00 0.00 39.13 4.85
3678 4717 1.522355 CATGATGTCGCTTCGGGCT 60.522 57.895 0.00 0.00 39.13 5.19
3679 4718 2.537560 CCATGATGTCGCTTCGGGC 61.538 63.158 0.00 0.00 37.64 6.13
3681 4720 1.153369 ACCCATGATGTCGCTTCGG 60.153 57.895 0.00 0.00 0.00 4.30
3682 4721 2.009108 CACCCATGATGTCGCTTCG 58.991 57.895 0.00 0.00 0.00 3.79
3684 4723 2.108514 CGCACCCATGATGTCGCTT 61.109 57.895 0.00 0.00 0.00 4.68
3685 4724 2.512286 CGCACCCATGATGTCGCT 60.512 61.111 0.00 0.00 0.00 4.93
3686 4725 4.241999 GCGCACCCATGATGTCGC 62.242 66.667 0.30 16.34 36.18 5.19
3687 4726 3.576356 GGCGCACCCATGATGTCG 61.576 66.667 10.83 2.26 0.00 4.35
3702 4741 2.537560 CCATGATGTCGCTTCGGGC 61.538 63.158 0.00 0.00 37.64 6.13
3703 4742 1.889105 CCCATGATGTCGCTTCGGG 60.889 63.158 0.00 0.00 0.00 5.14
3704 4743 1.153369 ACCCATGATGTCGCTTCGG 60.153 57.895 0.00 0.00 0.00 4.30
3705 4744 2.009108 CACCCATGATGTCGCTTCG 58.991 57.895 0.00 0.00 0.00 3.79
3706 4745 1.723870 GCACCCATGATGTCGCTTC 59.276 57.895 0.00 0.00 0.00 3.86
3707 4746 2.108514 CGCACCCATGATGTCGCTT 61.109 57.895 0.00 0.00 0.00 4.68
3708 4747 2.512286 CGCACCCATGATGTCGCT 60.512 61.111 0.00 0.00 0.00 4.93
3709 4748 4.241999 GCGCACCCATGATGTCGC 62.242 66.667 0.30 16.34 36.18 5.19
3710 4749 3.928769 CGCGCACCCATGATGTCG 61.929 66.667 8.75 2.26 0.00 4.35
3711 4750 3.576356 CCGCGCACCCATGATGTC 61.576 66.667 8.75 0.00 0.00 3.06
3724 4763 2.450960 TTCGTCAATTTGGTGCCGCG 62.451 55.000 0.00 0.00 0.00 6.46
3727 4766 1.336755 AGTGTTCGTCAATTTGGTGCC 59.663 47.619 0.00 0.00 0.00 5.01
3741 4780 4.202161 ACATCCAGTGGATATCGAGTGTTC 60.202 45.833 24.40 0.00 40.98 3.18
3756 4795 1.651240 GCGCAATCAGCACATCCAGT 61.651 55.000 0.30 0.00 46.13 4.00
3774 4813 4.285807 TGCAAATATACACATTGACCGC 57.714 40.909 0.00 0.00 0.00 5.68
4009 5050 5.295431 TCCGTAAGATTTCAATGTTGCTG 57.705 39.130 0.00 0.00 43.02 4.41
4045 5086 9.319143 CCAACTGTAAAGATTTATAGTCCTCAG 57.681 37.037 13.10 5.62 42.03 3.35
4089 5130 2.358737 GAGGAATATGCCCCGCCG 60.359 66.667 0.00 0.00 0.00 6.46
4095 5136 4.524328 CCCCTTATTGTTGAGGAATATGCC 59.476 45.833 0.00 0.00 34.91 4.40
4104 5145 6.040166 CCATTGAAGATCCCCTTATTGTTGAG 59.960 42.308 0.00 0.00 34.68 3.02
4118 5162 1.820519 TGCAGGTTGCCATTGAAGATC 59.179 47.619 0.00 0.00 44.23 2.75
4157 5201 2.061773 CACAAACTAGTCGCCAGTCTG 58.938 52.381 0.00 0.00 0.00 3.51
4158 5202 1.000955 CCACAAACTAGTCGCCAGTCT 59.999 52.381 0.00 0.00 0.00 3.24
4162 5206 0.753867 TGTCCACAAACTAGTCGCCA 59.246 50.000 0.00 0.00 0.00 5.69
4165 5215 1.001048 TCCGTGTCCACAAACTAGTCG 60.001 52.381 0.00 0.00 0.00 4.18
4169 5219 2.094597 CCGTATCCGTGTCCACAAACTA 60.095 50.000 0.00 0.00 0.00 2.24
4173 5223 0.899253 TCCCGTATCCGTGTCCACAA 60.899 55.000 0.00 0.00 0.00 3.33
4206 5256 1.874915 GCAATGTACGCGGCTACGA 60.875 57.895 12.47 0.00 44.60 3.43
4216 5266 5.457148 TGTTGAAAATGTGTTCGCAATGTAC 59.543 36.000 0.00 0.00 0.00 2.90
4225 5275 6.756074 TCATCCAGTTTGTTGAAAATGTGTTC 59.244 34.615 0.00 0.00 35.77 3.18
4231 5281 8.141268 ACGTATTTCATCCAGTTTGTTGAAAAT 58.859 29.630 0.00 0.00 40.36 1.82
4256 5306 2.095969 TGAAATCCGATCGTGTTTGCAC 60.096 45.455 15.09 4.04 41.97 4.57
4288 5338 2.535934 TCGGTTTGTGCATAATTCGC 57.464 45.000 11.72 0.00 0.00 4.70
4295 5345 2.853731 TTTTCGTTCGGTTTGTGCAT 57.146 40.000 0.00 0.00 0.00 3.96
4297 5347 3.880610 ACTATTTTCGTTCGGTTTGTGC 58.119 40.909 0.00 0.00 0.00 4.57
4345 5396 3.619233 ACGTGCACACAATTTTACCTC 57.381 42.857 18.64 0.00 0.00 3.85
4354 5407 1.945169 CGACCGTACGTGCACACAA 60.945 57.895 18.64 0.00 0.00 3.33
4356 5409 3.759828 GCGACCGTACGTGCACAC 61.760 66.667 18.64 7.49 35.59 3.82
4388 5441 6.707608 ACTAATGTAGTATATCCGTGTCGTGA 59.292 38.462 0.00 0.00 37.23 4.35
4402 5455 3.141398 CCCGCCGTAGACTAATGTAGTA 58.859 50.000 0.00 0.00 39.59 1.82
4547 5611 2.269241 CTTCCCCTCCGGCTGAAC 59.731 66.667 0.00 0.00 0.00 3.18
4600 5664 6.217294 GTTCTTTATCTTAGACCATCCTCGG 58.783 44.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.