Multiple sequence alignment - TraesCS6D01G288000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G288000 chr6D 100.000 2883 0 0 1 2883 397628485 397631367 0.000000e+00 5325.0
1 TraesCS6D01G288000 chr6D 94.488 381 12 2 2512 2883 5819374 5819754 1.930000e-161 579.0
2 TraesCS6D01G288000 chr6D 92.632 190 5 2 2512 2692 397635779 397635968 6.130000e-67 265.0
3 TraesCS6D01G288000 chr6D 97.500 40 1 0 1454 1493 102261455 102261494 5.150000e-08 69.4
4 TraesCS6D01G288000 chr6B 88.771 1505 69 44 839 2278 594439119 594440588 0.000000e+00 1751.0
5 TraesCS6D01G288000 chr6B 90.054 372 26 7 2522 2883 659250736 659250366 3.360000e-129 472.0
6 TraesCS6D01G288000 chr6B 82.004 489 34 20 389 839 594438681 594439153 1.630000e-97 366.0
7 TraesCS6D01G288000 chr6B 85.463 227 23 6 2268 2491 594440617 594440836 8.040000e-56 228.0
8 TraesCS6D01G288000 chr6B 87.143 140 12 4 1349 1482 594434715 594434854 1.380000e-33 154.0
9 TraesCS6D01G288000 chr6B 89.655 58 5 1 1435 1491 504020548 504020491 3.980000e-09 73.1
10 TraesCS6D01G288000 chr6A 88.173 1226 45 28 810 1975 543930834 543932019 0.000000e+00 1369.0
11 TraesCS6D01G288000 chr6A 84.769 801 74 27 31 795 543930066 543930854 0.000000e+00 760.0
12 TraesCS6D01G288000 chr6A 91.770 243 16 2 2268 2510 543932331 543932569 4.600000e-88 335.0
13 TraesCS6D01G288000 chr6A 90.991 222 7 4 2033 2242 543932047 543932267 1.310000e-73 287.0
14 TraesCS6D01G288000 chr4D 96.325 381 5 2 2512 2883 504071162 504070782 4.080000e-173 617.0
15 TraesCS6D01G288000 chr2D 95.538 381 8 2 2512 2883 588111752 588112132 4.110000e-168 601.0
16 TraesCS6D01G288000 chr2D 98.333 180 3 0 2512 2691 588116534 588116713 1.670000e-82 316.0
17 TraesCS6D01G288000 chr2D 90.000 180 18 0 2512 2691 503877050 503876871 1.730000e-57 233.0
18 TraesCS6D01G288000 chr3D 93.701 381 15 2 2512 2883 12089197 12088817 1.940000e-156 562.0
19 TraesCS6D01G288000 chr3A 91.935 372 30 0 2512 2883 583934502 583934873 3.290000e-144 521.0
20 TraesCS6D01G288000 chr2B 90.080 373 35 2 2512 2883 368986034 368985663 1.550000e-132 483.0
21 TraesCS6D01G288000 chr2B 87.363 182 18 5 2512 2691 368981273 368981095 1.350000e-48 204.0
22 TraesCS6D01G288000 chr3B 86.364 374 38 8 2522 2883 811069958 811069586 2.080000e-106 396.0
23 TraesCS6D01G288000 chr7A 85.791 373 41 6 2522 2883 247273677 247273306 4.510000e-103 385.0
24 TraesCS6D01G288000 chr7A 83.434 332 38 12 1310 1625 148832512 148832182 2.810000e-75 292.0
25 TraesCS6D01G288000 chr7D 83.283 329 41 11 1310 1625 147579643 147579316 1.010000e-74 291.0
26 TraesCS6D01G288000 chr7D 80.531 226 30 12 1342 1554 634158823 634159047 8.270000e-36 161.0
27 TraesCS6D01G288000 chr7B 82.972 323 44 10 1310 1622 110353074 110352753 6.080000e-72 281.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G288000 chr6D 397628485 397631367 2882 False 5325.00 5325 100.00000 1 2883 1 chr6D.!!$F3 2882
1 TraesCS6D01G288000 chr6B 594434715 594440836 6121 False 624.75 1751 85.84525 389 2491 4 chr6B.!!$F1 2102
2 TraesCS6D01G288000 chr6A 543930066 543932569 2503 False 687.75 1369 88.92575 31 2510 4 chr6A.!!$F1 2479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.107017 GGAATCCAGGCTGCTGCTTA 60.107 55.0 15.64 0.0 39.59 3.09 F
567 4156 0.107508 AGCACGGGGTGAATCTCATG 60.108 55.0 0.00 0.0 35.23 3.07 F
1756 5466 0.845768 CAAACTTTCAAAGCGTGGCG 59.154 50.0 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 5502 0.254178 CATCCATCCCCATCCCGATC 59.746 60.0 0.0 0.0 0.00 3.69 R
1798 5508 0.627986 GATCCCCATCCATCCCCATC 59.372 60.0 0.0 0.0 0.00 3.51 R
2788 6580 0.031994 GTGCCGACCAAGCAACAATT 59.968 50.0 0.0 0.0 43.02 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.745115 GCGTGGAGCTATGGCACAA 60.745 57.895 3.10 0.00 43.20 3.33
27 28 1.709147 GCGTGGAGCTATGGCACAAG 61.709 60.000 3.10 5.63 43.20 3.16
46 47 0.107017 GGAATCCAGGCTGCTGCTTA 60.107 55.000 15.64 0.00 39.59 3.09
55 56 1.812922 CTGCTGCTTAGCCTGGACG 60.813 63.158 0.29 0.00 0.00 4.79
57 58 2.265739 CTGCTTAGCCTGGACGCA 59.734 61.111 0.29 0.00 0.00 5.24
98 99 6.463331 CCCCTGGTCTACATAATTAAGCGTTA 60.463 42.308 0.00 0.00 0.00 3.18
99 100 7.159372 CCCTGGTCTACATAATTAAGCGTTAT 58.841 38.462 0.00 0.00 0.00 1.89
100 101 7.660208 CCCTGGTCTACATAATTAAGCGTTATT 59.340 37.037 0.00 0.00 0.00 1.40
101 102 9.701098 CCTGGTCTACATAATTAAGCGTTATTA 57.299 33.333 0.00 0.00 0.00 0.98
118 132 9.820725 AGCGTTATTATATACAACTAACACCAA 57.179 29.630 5.36 0.00 0.00 3.67
146 160 1.398390 GACAGCTATTTGGCCTGAACG 59.602 52.381 3.32 0.00 0.00 3.95
154 168 1.377366 TTGGCCTGAACGCGAACAAA 61.377 50.000 15.93 0.61 0.00 2.83
172 186 3.132111 ACAAACGCCATTATCATTTCCCC 59.868 43.478 0.00 0.00 0.00 4.81
210 224 1.345741 ACAGTACATGCACAGTCAGCT 59.654 47.619 0.00 0.00 0.00 4.24
225 239 1.001764 AGCTGCCAGCAGTGCAATA 60.002 52.632 20.53 0.00 45.56 1.90
238 252 3.566742 CAGTGCAATAATCATGCTGCCTA 59.433 43.478 0.00 0.00 44.14 3.93
260 274 7.355778 CCTATCAGCGAAATCAATTCCTTAAC 58.644 38.462 0.00 0.00 34.34 2.01
261 275 7.227512 CCTATCAGCGAAATCAATTCCTTAACT 59.772 37.037 0.00 0.00 34.34 2.24
275 289 6.614694 TTCCTTAACTAATACAGTGCCAGA 57.385 37.500 0.00 0.00 37.63 3.86
277 291 5.128827 TCCTTAACTAATACAGTGCCAGAGG 59.871 44.000 0.00 0.00 37.63 3.69
288 302 2.829003 CCAGAGGCCATGCAGCTG 60.829 66.667 10.11 10.11 33.32 4.24
289 303 3.518998 CAGAGGCCATGCAGCTGC 61.519 66.667 31.89 31.89 42.50 5.25
294 308 2.512286 GCCATGCAGCTGCGAGTA 60.512 61.111 32.11 16.56 45.83 2.59
295 309 2.108514 GCCATGCAGCTGCGAGTAA 61.109 57.895 32.11 16.16 45.83 2.24
296 310 2.012237 CCATGCAGCTGCGAGTAAG 58.988 57.895 32.11 17.37 45.83 2.34
297 311 1.351012 CATGCAGCTGCGAGTAAGC 59.649 57.895 32.11 7.88 45.83 3.09
306 320 1.144969 TGCGAGTAAGCAAAACCTCG 58.855 50.000 0.00 0.00 45.06 4.63
307 321 1.145803 GCGAGTAAGCAAAACCTCGT 58.854 50.000 9.31 0.00 46.30 4.18
308 322 1.136336 GCGAGTAAGCAAAACCTCGTG 60.136 52.381 9.31 0.00 46.30 4.35
309 323 1.136336 CGAGTAAGCAAAACCTCGTGC 60.136 52.381 0.00 0.00 41.30 5.34
313 327 2.050077 GCAAAACCTCGTGCTGGC 60.050 61.111 0.00 0.00 37.78 4.85
314 328 2.252260 CAAAACCTCGTGCTGGCG 59.748 61.111 0.00 0.00 0.00 5.69
316 330 1.525077 AAAACCTCGTGCTGGCGAA 60.525 52.632 0.00 0.00 40.57 4.70
317 331 0.889186 AAAACCTCGTGCTGGCGAAT 60.889 50.000 0.00 0.00 40.57 3.34
318 332 1.298859 AAACCTCGTGCTGGCGAATC 61.299 55.000 0.00 0.00 40.57 2.52
319 333 2.892425 CCTCGTGCTGGCGAATCC 60.892 66.667 0.00 0.00 40.57 3.01
320 334 3.257561 CTCGTGCTGGCGAATCCG 61.258 66.667 0.00 0.00 40.57 4.18
343 357 4.398598 GCCGGTCGCAACGCAAAT 62.399 61.111 1.90 0.00 37.47 2.32
344 358 2.501650 CCGGTCGCAACGCAAATG 60.502 61.111 0.00 0.00 0.00 2.32
345 359 2.501650 CGGTCGCAACGCAAATGG 60.502 61.111 0.00 0.00 0.00 3.16
347 361 2.050533 GTCGCAACGCAAATGGCA 60.051 55.556 0.00 0.00 45.17 4.92
349 363 3.460278 CGCAACGCAAATGGCACG 61.460 61.111 0.00 0.00 45.17 5.34
350 364 2.354539 GCAACGCAAATGGCACGT 60.355 55.556 0.00 0.00 45.17 4.49
352 366 1.065031 GCAACGCAAATGGCACGTAG 61.065 55.000 1.15 0.00 45.17 3.51
353 367 0.515127 CAACGCAAATGGCACGTAGA 59.485 50.000 1.15 0.00 45.17 2.59
354 368 0.796312 AACGCAAATGGCACGTAGAG 59.204 50.000 1.15 0.00 45.17 2.43
355 369 1.019278 ACGCAAATGGCACGTAGAGG 61.019 55.000 0.00 0.00 45.17 3.69
358 372 1.369625 CAAATGGCACGTAGAGGACC 58.630 55.000 0.00 0.00 0.00 4.46
359 373 0.252197 AAATGGCACGTAGAGGACCC 59.748 55.000 0.00 0.00 0.00 4.46
361 375 1.330655 ATGGCACGTAGAGGACCCAG 61.331 60.000 0.00 0.00 0.00 4.45
362 376 2.184579 GCACGTAGAGGACCCAGC 59.815 66.667 0.00 0.00 0.00 4.85
363 377 2.646175 GCACGTAGAGGACCCAGCA 61.646 63.158 0.00 0.00 0.00 4.41
364 378 1.215647 CACGTAGAGGACCCAGCAC 59.784 63.158 0.00 0.00 0.00 4.40
365 379 2.341101 ACGTAGAGGACCCAGCACG 61.341 63.158 0.00 4.51 35.62 5.34
366 380 2.184579 GTAGAGGACCCAGCACGC 59.815 66.667 0.00 0.00 0.00 5.34
367 381 3.075005 TAGAGGACCCAGCACGCC 61.075 66.667 0.00 0.00 0.00 5.68
389 403 2.939022 GCAACTGCCTCACACGAC 59.061 61.111 0.00 0.00 34.31 4.34
390 404 2.607892 GCAACTGCCTCACACGACC 61.608 63.158 0.00 0.00 34.31 4.79
392 406 3.515316 AACTGCCTCACACGACCGG 62.515 63.158 0.00 0.00 0.00 5.28
501 4090 0.745845 ACCTGGCGCACTTCATCATC 60.746 55.000 10.83 0.00 0.00 2.92
503 4092 1.306148 CTGGCGCACTTCATCATCAT 58.694 50.000 10.83 0.00 0.00 2.45
505 4094 2.874086 CTGGCGCACTTCATCATCATTA 59.126 45.455 10.83 0.00 0.00 1.90
508 4097 4.201940 TGGCGCACTTCATCATCATTAAAG 60.202 41.667 10.83 0.00 0.00 1.85
509 4098 3.727723 GCGCACTTCATCATCATTAAAGC 59.272 43.478 0.30 0.00 0.00 3.51
510 4099 4.731483 GCGCACTTCATCATCATTAAAGCA 60.731 41.667 0.30 0.00 0.00 3.91
520 4109 2.323959 TCATTAAAGCAAAAAGGCGCG 58.676 42.857 0.00 0.00 39.27 6.86
556 4145 0.391927 TCGGATAACAAAGCACGGGG 60.392 55.000 0.00 0.00 0.00 5.73
564 4153 0.804989 CAAAGCACGGGGTGAATCTC 59.195 55.000 0.00 0.00 35.23 2.75
566 4155 0.620556 AAGCACGGGGTGAATCTCAT 59.379 50.000 0.00 0.00 35.23 2.90
567 4156 0.107508 AGCACGGGGTGAATCTCATG 60.108 55.000 0.00 0.00 35.23 3.07
595 4188 2.433868 ATAACGCACTACTATGCCGG 57.566 50.000 0.00 0.00 42.99 6.13
652 4245 4.092091 GCTGAATGTTTCTCCAACTCTACG 59.908 45.833 0.00 0.00 36.21 3.51
653 4246 4.566004 TGAATGTTTCTCCAACTCTACGG 58.434 43.478 0.00 0.00 36.21 4.02
654 4247 4.282449 TGAATGTTTCTCCAACTCTACGGA 59.718 41.667 0.00 0.00 36.21 4.69
655 4248 5.046591 TGAATGTTTCTCCAACTCTACGGAT 60.047 40.000 0.00 0.00 36.21 4.18
738 4355 3.255149 AGTGGACAGTACCAACGAGTAAG 59.745 47.826 0.00 0.00 41.87 2.34
764 4381 1.226802 CTGATCTGCGGTGAGACGG 60.227 63.158 0.00 0.00 0.00 4.79
766 4383 2.362503 ATCTGCGGTGAGACGGGA 60.363 61.111 0.00 0.00 0.00 5.14
784 4401 3.188492 GGGAGAGAAAAGTAGTAAGCGC 58.812 50.000 0.00 0.00 0.00 5.92
792 4409 5.235831 AGAAAAGTAGTAAGCGCGTCTTTTT 59.764 36.000 18.28 13.18 35.97 1.94
963 4590 2.928396 CCCACCGTTGACTCCCCT 60.928 66.667 0.00 0.00 0.00 4.79
964 4591 2.347490 CCACCGTTGACTCCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
1017 4645 1.747367 CCGATAAAAGGCCCGCACA 60.747 57.895 0.00 0.00 0.00 4.57
1018 4646 1.309499 CCGATAAAAGGCCCGCACAA 61.309 55.000 0.00 0.00 0.00 3.33
1030 4658 2.485122 GCACAACATACGCTGCCC 59.515 61.111 0.00 0.00 0.00 5.36
1711 5421 2.910977 ACAGGGAAAGGAAAGGTATCGT 59.089 45.455 0.00 0.00 0.00 3.73
1756 5466 0.845768 CAAACTTTCAAAGCGTGGCG 59.154 50.000 0.00 0.00 0.00 5.69
1763 5473 1.234821 TCAAAGCGTGGCGAAAAGAT 58.765 45.000 0.00 0.00 0.00 2.40
1792 5502 2.278857 CTCGGATGGTTCGGCTCG 60.279 66.667 0.00 0.00 0.00 5.03
1795 5505 1.661821 CGGATGGTTCGGCTCGATC 60.662 63.158 0.00 0.00 35.23 3.69
1798 5508 3.151958 ATGGTTCGGCTCGATCGGG 62.152 63.158 16.41 14.14 35.23 5.14
1799 5509 3.524606 GGTTCGGCTCGATCGGGA 61.525 66.667 21.68 7.08 35.23 5.14
1800 5510 2.728817 GTTCGGCTCGATCGGGAT 59.271 61.111 21.68 0.00 35.23 3.85
1803 5513 4.363990 CGGCTCGATCGGGATGGG 62.364 72.222 21.68 0.00 0.00 4.00
1804 5514 4.008933 GGCTCGATCGGGATGGGG 62.009 72.222 21.68 0.45 0.00 4.96
1805 5515 2.917751 GCTCGATCGGGATGGGGA 60.918 66.667 21.68 0.00 0.00 4.81
1806 5516 2.286523 GCTCGATCGGGATGGGGAT 61.287 63.158 21.68 0.00 0.00 3.85
1852 5562 2.158081 AGTTCTTTCTCTCCTCCCCTGT 60.158 50.000 0.00 0.00 0.00 4.00
1856 5569 0.793617 TTCTCTCCTCCCCTGTTCCT 59.206 55.000 0.00 0.00 0.00 3.36
1934 5648 8.575565 TTGCTACATTCGTTCTCATACTTATC 57.424 34.615 0.00 0.00 0.00 1.75
1977 5700 5.961395 TTACGGCTGATAATTTCTTCGTC 57.039 39.130 0.00 0.00 0.00 4.20
1984 5707 7.128976 GGCTGATAATTTCTTCGTCTTTGATC 58.871 38.462 0.00 0.00 0.00 2.92
1986 5709 8.061268 GCTGATAATTTCTTCGTCTTTGATCTC 58.939 37.037 0.00 0.00 0.00 2.75
1987 5710 9.091784 CTGATAATTTCTTCGTCTTTGATCTCA 57.908 33.333 0.00 0.00 0.00 3.27
1996 5723 3.679980 CGTCTTTGATCTCACGAATGGTT 59.320 43.478 0.00 0.00 34.06 3.67
2010 5737 4.202326 ACGAATGGTTAGTGACTTCTTGGT 60.202 41.667 0.00 0.00 0.00 3.67
2019 5746 2.096218 GTGACTTCTTGGTGTCGCATTC 60.096 50.000 0.00 0.00 41.64 2.67
2023 5750 1.154413 CTTGGTGTCGCATTCGCAC 60.154 57.895 4.36 4.36 39.89 5.34
2152 5896 1.492319 TTGCGACCCAAGAAACGACG 61.492 55.000 0.00 0.00 0.00 5.12
2232 5976 2.355837 GTCTTGCACGAGACGGCA 60.356 61.111 2.87 0.00 36.97 5.69
2258 6010 2.746277 GTGACGCATGTCCCCACC 60.746 66.667 0.00 0.00 44.86 4.61
2281 6070 1.288127 GAGGTGTTACACGGCTCGT 59.712 57.895 9.52 0.00 42.36 4.18
2285 6074 1.602668 GGTGTTACACGGCTCGTTGTA 60.603 52.381 9.52 2.81 38.32 2.41
2293 6082 1.802365 ACGGCTCGTTGTAAATTGGAC 59.198 47.619 0.00 0.00 36.35 4.02
2322 6114 5.195940 AGGGAATTGATGTGAATTCATCGT 58.804 37.500 12.12 6.91 44.82 3.73
2324 6116 5.066375 GGGAATTGATGTGAATTCATCGTGA 59.934 40.000 12.12 0.00 44.82 4.35
2348 6140 4.383850 ACCGTGATCTTGAGAGAATCAG 57.616 45.455 0.00 0.00 39.68 2.90
2353 6145 3.708631 TGATCTTGAGAGAATCAGGGACC 59.291 47.826 0.00 0.00 39.68 4.46
2354 6146 2.103373 TCTTGAGAGAATCAGGGACCG 58.897 52.381 0.00 0.00 39.68 4.79
2383 6175 1.743996 GAATTCCAGACAGACAGCCC 58.256 55.000 0.00 0.00 0.00 5.19
2444 6236 5.416952 CAGAATAGAATGCTTCTGGGTTGTT 59.583 40.000 8.21 0.00 42.93 2.83
2510 6302 4.128643 ACTTTGAATGGTTTGTGCAATGG 58.871 39.130 0.00 0.00 0.00 3.16
2511 6303 2.835580 TGAATGGTTTGTGCAATGGG 57.164 45.000 0.00 0.00 0.00 4.00
2512 6304 2.045524 TGAATGGTTTGTGCAATGGGT 58.954 42.857 0.00 0.00 0.00 4.51
2513 6305 2.224233 TGAATGGTTTGTGCAATGGGTG 60.224 45.455 0.00 0.00 0.00 4.61
2514 6306 0.686224 ATGGTTTGTGCAATGGGTGG 59.314 50.000 0.00 0.00 0.00 4.61
2515 6307 0.397675 TGGTTTGTGCAATGGGTGGA 60.398 50.000 0.00 0.00 0.00 4.02
2519 6311 3.578456 GTGCAATGGGTGGACGAG 58.422 61.111 0.00 0.00 38.94 4.18
2520 6312 1.302511 GTGCAATGGGTGGACGAGT 60.303 57.895 0.00 0.00 38.94 4.18
2521 6313 1.302431 TGCAATGGGTGGACGAGTG 60.302 57.895 0.00 0.00 0.00 3.51
2522 6314 1.003839 GCAATGGGTGGACGAGTGA 60.004 57.895 0.00 0.00 0.00 3.41
2523 6315 0.605319 GCAATGGGTGGACGAGTGAA 60.605 55.000 0.00 0.00 0.00 3.18
2524 6316 1.890876 CAATGGGTGGACGAGTGAAA 58.109 50.000 0.00 0.00 0.00 2.69
2525 6317 1.806542 CAATGGGTGGACGAGTGAAAG 59.193 52.381 0.00 0.00 0.00 2.62
2526 6318 1.348064 ATGGGTGGACGAGTGAAAGA 58.652 50.000 0.00 0.00 0.00 2.52
2527 6319 1.124780 TGGGTGGACGAGTGAAAGAA 58.875 50.000 0.00 0.00 0.00 2.52
2528 6320 1.697432 TGGGTGGACGAGTGAAAGAAT 59.303 47.619 0.00 0.00 0.00 2.40
2529 6321 2.076863 GGGTGGACGAGTGAAAGAATG 58.923 52.381 0.00 0.00 0.00 2.67
2530 6322 2.289444 GGGTGGACGAGTGAAAGAATGA 60.289 50.000 0.00 0.00 0.00 2.57
2531 6323 2.996621 GGTGGACGAGTGAAAGAATGAG 59.003 50.000 0.00 0.00 0.00 2.90
2532 6324 2.413453 GTGGACGAGTGAAAGAATGAGC 59.587 50.000 0.00 0.00 0.00 4.26
2533 6325 2.037121 TGGACGAGTGAAAGAATGAGCA 59.963 45.455 0.00 0.00 0.00 4.26
2534 6326 3.067106 GGACGAGTGAAAGAATGAGCAA 58.933 45.455 0.00 0.00 0.00 3.91
2535 6327 3.686726 GGACGAGTGAAAGAATGAGCAAT 59.313 43.478 0.00 0.00 0.00 3.56
2536 6328 4.201763 GGACGAGTGAAAGAATGAGCAATC 60.202 45.833 0.00 0.00 0.00 2.67
2537 6329 3.686726 ACGAGTGAAAGAATGAGCAATCC 59.313 43.478 0.00 0.00 0.00 3.01
2538 6330 3.686241 CGAGTGAAAGAATGAGCAATCCA 59.314 43.478 0.00 0.00 0.00 3.41
2539 6331 4.436584 CGAGTGAAAGAATGAGCAATCCAC 60.437 45.833 0.00 0.00 0.00 4.02
2540 6332 3.760684 AGTGAAAGAATGAGCAATCCACC 59.239 43.478 0.00 0.00 0.00 4.61
2541 6333 3.760684 GTGAAAGAATGAGCAATCCACCT 59.239 43.478 0.00 0.00 0.00 4.00
2542 6334 4.219288 GTGAAAGAATGAGCAATCCACCTT 59.781 41.667 0.00 0.00 0.00 3.50
2543 6335 5.415701 GTGAAAGAATGAGCAATCCACCTTA 59.584 40.000 0.00 0.00 0.00 2.69
2544 6336 5.649395 TGAAAGAATGAGCAATCCACCTTAG 59.351 40.000 0.00 0.00 0.00 2.18
2545 6337 4.162040 AGAATGAGCAATCCACCTTAGG 57.838 45.455 0.00 0.00 0.00 2.69
2546 6338 3.525199 AGAATGAGCAATCCACCTTAGGT 59.475 43.478 0.00 0.00 35.62 3.08
2556 6348 2.848608 ACCTTAGGTGGTGCTGTGA 58.151 52.632 1.74 0.00 39.17 3.58
2557 6349 1.362224 ACCTTAGGTGGTGCTGTGAT 58.638 50.000 1.74 0.00 39.17 3.06
2558 6350 1.705186 ACCTTAGGTGGTGCTGTGATT 59.295 47.619 1.74 0.00 39.17 2.57
2559 6351 2.086869 CCTTAGGTGGTGCTGTGATTG 58.913 52.381 0.00 0.00 0.00 2.67
2560 6352 2.290260 CCTTAGGTGGTGCTGTGATTGA 60.290 50.000 0.00 0.00 0.00 2.57
2561 6353 3.614092 CTTAGGTGGTGCTGTGATTGAT 58.386 45.455 0.00 0.00 0.00 2.57
2562 6354 2.119801 AGGTGGTGCTGTGATTGATC 57.880 50.000 0.00 0.00 0.00 2.92
2563 6355 1.632409 AGGTGGTGCTGTGATTGATCT 59.368 47.619 0.00 0.00 0.00 2.75
2564 6356 2.012673 GGTGGTGCTGTGATTGATCTC 58.987 52.381 0.00 0.00 0.00 2.75
2565 6357 2.355513 GGTGGTGCTGTGATTGATCTCT 60.356 50.000 0.00 0.00 0.00 3.10
2566 6358 2.676839 GTGGTGCTGTGATTGATCTCTG 59.323 50.000 0.00 0.00 0.00 3.35
2567 6359 1.669779 GGTGCTGTGATTGATCTCTGC 59.330 52.381 14.19 14.19 42.06 4.26
2568 6360 2.630158 GTGCTGTGATTGATCTCTGCT 58.370 47.619 18.83 0.00 42.15 4.24
2569 6361 3.008330 GTGCTGTGATTGATCTCTGCTT 58.992 45.455 18.83 0.00 42.15 3.91
2570 6362 4.186926 GTGCTGTGATTGATCTCTGCTTA 58.813 43.478 18.83 4.63 42.15 3.09
2571 6363 4.815308 GTGCTGTGATTGATCTCTGCTTAT 59.185 41.667 18.83 0.00 42.15 1.73
2572 6364 5.987953 GTGCTGTGATTGATCTCTGCTTATA 59.012 40.000 18.83 3.87 42.15 0.98
2573 6365 6.649973 GTGCTGTGATTGATCTCTGCTTATAT 59.350 38.462 18.83 0.00 42.15 0.86
2574 6366 7.816513 GTGCTGTGATTGATCTCTGCTTATATA 59.183 37.037 18.83 3.11 42.15 0.86
2575 6367 8.370182 TGCTGTGATTGATCTCTGCTTATATAA 58.630 33.333 18.83 0.00 42.15 0.98
2576 6368 9.212641 GCTGTGATTGATCTCTGCTTATATAAA 57.787 33.333 13.94 0.00 40.08 1.40
2587 6379 9.628500 TCTCTGCTTATATAAAGACAGTACAGA 57.372 33.333 14.66 10.17 0.00 3.41
2588 6380 9.891828 CTCTGCTTATATAAAGACAGTACAGAG 57.108 37.037 14.66 0.00 39.96 3.35
2589 6381 8.851145 TCTGCTTATATAAAGACAGTACAGAGG 58.149 37.037 14.66 0.00 0.00 3.69
2590 6382 7.952671 TGCTTATATAAAGACAGTACAGAGGG 58.047 38.462 0.00 0.00 0.00 4.30
2591 6383 7.783119 TGCTTATATAAAGACAGTACAGAGGGA 59.217 37.037 0.00 0.00 0.00 4.20
2592 6384 8.301002 GCTTATATAAAGACAGTACAGAGGGAG 58.699 40.741 0.00 0.00 0.00 4.30
2593 6385 6.658188 ATATAAAGACAGTACAGAGGGAGC 57.342 41.667 0.00 0.00 0.00 4.70
2594 6386 1.178276 AAGACAGTACAGAGGGAGCG 58.822 55.000 0.00 0.00 0.00 5.03
2595 6387 1.139947 GACAGTACAGAGGGAGCGC 59.860 63.158 0.00 0.00 0.00 5.92
2596 6388 2.286127 GACAGTACAGAGGGAGCGCC 62.286 65.000 2.29 0.00 0.00 6.53
2597 6389 3.141488 AGTACAGAGGGAGCGCCG 61.141 66.667 2.29 0.00 33.83 6.46
2598 6390 3.138798 GTACAGAGGGAGCGCCGA 61.139 66.667 2.29 0.00 33.83 5.54
2599 6391 2.829003 TACAGAGGGAGCGCCGAG 60.829 66.667 2.29 0.00 33.83 4.63
2626 6418 4.831307 GAGCGCGTGGTCGATCGT 62.831 66.667 15.94 0.00 39.71 3.73
2631 6423 3.445687 CGTGGTCGATCGTGGGGA 61.446 66.667 15.94 0.00 39.71 4.81
2632 6424 2.782222 CGTGGTCGATCGTGGGGAT 61.782 63.158 15.94 0.00 39.71 3.85
2633 6425 1.067582 GTGGTCGATCGTGGGGATC 59.932 63.158 15.94 0.00 46.70 3.36
2639 6431 2.973420 GATCGTGGGGATCGTGAAC 58.027 57.895 0.00 0.00 42.02 3.18
2640 6432 0.460311 GATCGTGGGGATCGTGAACT 59.540 55.000 0.00 0.00 42.02 3.01
2641 6433 0.175760 ATCGTGGGGATCGTGAACTG 59.824 55.000 0.00 0.00 0.00 3.16
2642 6434 1.447838 CGTGGGGATCGTGAACTGG 60.448 63.158 0.00 0.00 0.00 4.00
2643 6435 1.884075 CGTGGGGATCGTGAACTGGA 61.884 60.000 0.00 0.00 0.00 3.86
2644 6436 0.108138 GTGGGGATCGTGAACTGGAG 60.108 60.000 0.00 0.00 0.00 3.86
2645 6437 1.153349 GGGGATCGTGAACTGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
2646 6438 1.519455 GGGATCGTGAACTGGAGCG 60.519 63.158 0.00 0.00 0.00 5.03
2647 6439 1.215647 GGATCGTGAACTGGAGCGT 59.784 57.895 0.00 0.00 0.00 5.07
2648 6440 1.078759 GGATCGTGAACTGGAGCGTG 61.079 60.000 0.00 0.00 0.00 5.34
2649 6441 1.687494 GATCGTGAACTGGAGCGTGC 61.687 60.000 0.00 0.00 0.00 5.34
2650 6442 3.767230 CGTGAACTGGAGCGTGCG 61.767 66.667 0.00 0.00 0.00 5.34
2651 6443 3.414700 GTGAACTGGAGCGTGCGG 61.415 66.667 0.00 0.00 0.00 5.69
2652 6444 4.680237 TGAACTGGAGCGTGCGGG 62.680 66.667 0.00 0.00 0.00 6.13
2653 6445 4.373116 GAACTGGAGCGTGCGGGA 62.373 66.667 0.00 0.00 0.00 5.14
2654 6446 4.681978 AACTGGAGCGTGCGGGAC 62.682 66.667 0.00 0.00 0.00 4.46
2656 6448 4.457496 CTGGAGCGTGCGGGACAT 62.457 66.667 0.00 0.00 0.00 3.06
2657 6449 4.758251 TGGAGCGTGCGGGACATG 62.758 66.667 0.00 0.00 38.41 3.21
2675 6467 4.222847 GGCGAGCGGGGGTTCTAG 62.223 72.222 0.00 0.00 0.00 2.43
2676 6468 3.459063 GCGAGCGGGGGTTCTAGT 61.459 66.667 0.00 0.00 0.00 2.57
2677 6469 2.806237 CGAGCGGGGGTTCTAGTC 59.194 66.667 0.00 0.00 0.00 2.59
2678 6470 1.753463 CGAGCGGGGGTTCTAGTCT 60.753 63.158 0.00 0.00 0.00 3.24
2679 6471 0.465097 CGAGCGGGGGTTCTAGTCTA 60.465 60.000 0.00 0.00 0.00 2.59
2680 6472 1.818522 CGAGCGGGGGTTCTAGTCTAT 60.819 57.143 0.00 0.00 0.00 1.98
2681 6473 2.551721 CGAGCGGGGGTTCTAGTCTATA 60.552 54.545 0.00 0.00 0.00 1.31
2682 6474 2.819019 GAGCGGGGGTTCTAGTCTATAC 59.181 54.545 0.00 0.00 0.00 1.47
2683 6475 2.176364 AGCGGGGGTTCTAGTCTATACA 59.824 50.000 0.00 0.00 0.00 2.29
2684 6476 2.557490 GCGGGGGTTCTAGTCTATACAG 59.443 54.545 0.00 0.00 0.00 2.74
2685 6477 3.830121 CGGGGGTTCTAGTCTATACAGT 58.170 50.000 0.00 0.00 0.00 3.55
2686 6478 4.213513 CGGGGGTTCTAGTCTATACAGTT 58.786 47.826 0.00 0.00 0.00 3.16
2687 6479 5.380043 CGGGGGTTCTAGTCTATACAGTTA 58.620 45.833 0.00 0.00 0.00 2.24
2688 6480 5.829924 CGGGGGTTCTAGTCTATACAGTTAA 59.170 44.000 0.00 0.00 0.00 2.01
2689 6481 6.238869 CGGGGGTTCTAGTCTATACAGTTAAC 60.239 46.154 0.00 0.00 0.00 2.01
2690 6482 6.608808 GGGGGTTCTAGTCTATACAGTTAACA 59.391 42.308 8.61 0.00 0.00 2.41
2691 6483 7.417229 GGGGGTTCTAGTCTATACAGTTAACAC 60.417 44.444 8.61 0.00 0.00 3.32
2692 6484 7.417229 GGGGTTCTAGTCTATACAGTTAACACC 60.417 44.444 8.61 1.12 0.00 4.16
2693 6485 7.417229 GGGTTCTAGTCTATACAGTTAACACCC 60.417 44.444 8.61 6.80 0.00 4.61
2694 6486 7.341512 GGTTCTAGTCTATACAGTTAACACCCT 59.658 40.741 8.61 0.00 0.00 4.34
2695 6487 7.876936 TCTAGTCTATACAGTTAACACCCTG 57.123 40.000 8.61 0.00 34.82 4.45
2696 6488 5.340439 AGTCTATACAGTTAACACCCTGC 57.660 43.478 8.61 0.00 31.76 4.85
2697 6489 4.161754 AGTCTATACAGTTAACACCCTGCC 59.838 45.833 8.61 0.00 31.76 4.85
2698 6490 2.396590 ATACAGTTAACACCCTGCCG 57.603 50.000 8.61 0.00 31.76 5.69
2699 6491 0.320946 TACAGTTAACACCCTGCCGC 60.321 55.000 8.61 0.00 31.76 6.53
2700 6492 1.599518 CAGTTAACACCCTGCCGCA 60.600 57.895 8.61 0.00 0.00 5.69
2701 6493 1.302511 AGTTAACACCCTGCCGCAG 60.303 57.895 13.82 13.82 0.00 5.18
2702 6494 1.599797 GTTAACACCCTGCCGCAGT 60.600 57.895 18.98 2.72 0.00 4.40
2703 6495 1.149627 TTAACACCCTGCCGCAGTT 59.850 52.632 18.98 9.90 0.00 3.16
2704 6496 1.169661 TTAACACCCTGCCGCAGTTG 61.170 55.000 18.98 16.60 0.00 3.16
2705 6497 2.046009 TAACACCCTGCCGCAGTTGA 62.046 55.000 18.98 0.00 0.00 3.18
2706 6498 2.594303 CACCCTGCCGCAGTTGAA 60.594 61.111 18.98 0.00 0.00 2.69
2707 6499 2.281761 ACCCTGCCGCAGTTGAAG 60.282 61.111 18.98 3.27 0.00 3.02
2708 6500 3.741476 CCCTGCCGCAGTTGAAGC 61.741 66.667 18.98 0.00 0.00 3.86
2709 6501 2.979676 CCTGCCGCAGTTGAAGCA 60.980 61.111 18.98 0.00 0.00 3.91
2710 6502 2.338015 CCTGCCGCAGTTGAAGCAT 61.338 57.895 18.98 0.00 34.16 3.79
2711 6503 1.136147 CTGCCGCAGTTGAAGCATC 59.864 57.895 12.54 0.00 34.16 3.91
2712 6504 2.262471 CTGCCGCAGTTGAAGCATCC 62.262 60.000 12.54 0.00 34.16 3.51
2713 6505 2.787249 CCGCAGTTGAAGCATCCG 59.213 61.111 0.00 0.00 0.00 4.18
2714 6506 2.753966 CCGCAGTTGAAGCATCCGG 61.754 63.158 0.00 0.00 0.00 5.14
2715 6507 2.753966 CGCAGTTGAAGCATCCGGG 61.754 63.158 0.00 0.00 0.00 5.73
2716 6508 2.409870 GCAGTTGAAGCATCCGGGG 61.410 63.158 0.00 0.00 0.00 5.73
2717 6509 1.750399 CAGTTGAAGCATCCGGGGG 60.750 63.158 0.00 0.00 0.00 5.40
2731 6523 3.443588 GGGGGCGGATGCATAAAC 58.556 61.111 0.00 0.00 45.35 2.01
2732 6524 1.152756 GGGGGCGGATGCATAAACT 60.153 57.895 0.00 0.00 45.35 2.66
2733 6525 1.455383 GGGGGCGGATGCATAAACTG 61.455 60.000 0.00 0.00 45.35 3.16
2734 6526 1.455383 GGGGCGGATGCATAAACTGG 61.455 60.000 0.00 0.00 45.35 4.00
2735 6527 0.465460 GGGCGGATGCATAAACTGGA 60.465 55.000 0.00 0.00 45.35 3.86
2736 6528 1.388547 GGCGGATGCATAAACTGGAA 58.611 50.000 0.00 0.00 45.35 3.53
2737 6529 1.065551 GGCGGATGCATAAACTGGAAC 59.934 52.381 0.00 0.00 45.35 3.62
2738 6530 1.268032 GCGGATGCATAAACTGGAACG 60.268 52.381 0.00 0.00 42.15 3.95
2739 6531 2.276201 CGGATGCATAAACTGGAACGA 58.724 47.619 0.00 0.00 33.54 3.85
2740 6532 2.675844 CGGATGCATAAACTGGAACGAA 59.324 45.455 0.00 0.00 33.54 3.85
2741 6533 3.126171 CGGATGCATAAACTGGAACGAAA 59.874 43.478 0.00 0.00 33.54 3.46
2742 6534 4.378978 CGGATGCATAAACTGGAACGAAAA 60.379 41.667 0.00 0.00 33.54 2.29
2743 6535 5.650543 GGATGCATAAACTGGAACGAAAAT 58.349 37.500 0.00 0.00 0.00 1.82
2744 6536 5.743872 GGATGCATAAACTGGAACGAAAATC 59.256 40.000 0.00 0.00 0.00 2.17
2745 6537 5.957842 TGCATAAACTGGAACGAAAATCT 57.042 34.783 0.00 0.00 0.00 2.40
2746 6538 6.325919 TGCATAAACTGGAACGAAAATCTT 57.674 33.333 0.00 0.00 0.00 2.40
2747 6539 6.148948 TGCATAAACTGGAACGAAAATCTTG 58.851 36.000 0.00 0.00 0.00 3.02
2748 6540 6.016693 TGCATAAACTGGAACGAAAATCTTGA 60.017 34.615 0.00 0.00 0.00 3.02
2749 6541 6.861055 GCATAAACTGGAACGAAAATCTTGAA 59.139 34.615 0.00 0.00 0.00 2.69
2750 6542 7.381139 GCATAAACTGGAACGAAAATCTTGAAA 59.619 33.333 0.00 0.00 0.00 2.69
2751 6543 8.690840 CATAAACTGGAACGAAAATCTTGAAAC 58.309 33.333 0.00 0.00 0.00 2.78
2752 6544 4.844267 ACTGGAACGAAAATCTTGAAACG 58.156 39.130 0.00 0.00 0.00 3.60
2753 6545 3.623863 TGGAACGAAAATCTTGAAACGC 58.376 40.909 0.00 0.00 0.00 4.84
2754 6546 2.977829 GGAACGAAAATCTTGAAACGCC 59.022 45.455 0.00 0.00 0.00 5.68
2755 6547 2.309898 ACGAAAATCTTGAAACGCCG 57.690 45.000 0.00 0.00 0.00 6.46
2756 6548 1.600485 ACGAAAATCTTGAAACGCCGT 59.400 42.857 0.00 0.00 0.00 5.68
2757 6549 1.969256 CGAAAATCTTGAAACGCCGTG 59.031 47.619 0.00 0.00 0.00 4.94
2758 6550 2.315901 GAAAATCTTGAAACGCCGTGG 58.684 47.619 0.00 0.00 0.00 4.94
2759 6551 1.314730 AAATCTTGAAACGCCGTGGT 58.685 45.000 0.00 0.00 0.00 4.16
2760 6552 0.872388 AATCTTGAAACGCCGTGGTC 59.128 50.000 0.00 0.00 0.00 4.02
2761 6553 1.289109 ATCTTGAAACGCCGTGGTCG 61.289 55.000 0.00 2.02 0.00 4.79
2779 6571 3.483587 GGAGACCCTTGGTGAGCA 58.516 61.111 0.00 0.00 35.25 4.26
2780 6572 1.003233 GGAGACCCTTGGTGAGCAC 60.003 63.158 0.00 0.00 35.25 4.40
2781 6573 1.374758 GAGACCCTTGGTGAGCACG 60.375 63.158 0.00 0.00 35.25 5.34
2782 6574 2.100879 GAGACCCTTGGTGAGCACGT 62.101 60.000 0.00 0.00 35.25 4.49
2783 6575 1.668151 GACCCTTGGTGAGCACGTC 60.668 63.158 0.00 0.00 35.25 4.34
2784 6576 2.358737 CCCTTGGTGAGCACGTCC 60.359 66.667 0.00 0.00 0.00 4.79
2785 6577 2.738521 CCTTGGTGAGCACGTCCG 60.739 66.667 0.00 0.00 0.00 4.79
2786 6578 3.414700 CTTGGTGAGCACGTCCGC 61.415 66.667 0.00 0.00 0.00 5.54
2790 6582 2.809601 GTGAGCACGTCCGCGAAT 60.810 61.111 8.23 0.00 42.00 3.34
2791 6583 2.048597 TGAGCACGTCCGCGAATT 60.049 55.556 8.23 0.00 42.00 2.17
2792 6584 2.379634 TGAGCACGTCCGCGAATTG 61.380 57.895 8.23 0.00 42.00 2.32
2793 6585 2.357034 AGCACGTCCGCGAATTGT 60.357 55.556 8.23 0.00 42.00 2.71
2794 6586 1.897398 GAGCACGTCCGCGAATTGTT 61.897 55.000 8.23 0.00 42.00 2.83
2795 6587 1.792057 GCACGTCCGCGAATTGTTG 60.792 57.895 8.23 0.00 42.00 3.33
2796 6588 1.792057 CACGTCCGCGAATTGTTGC 60.792 57.895 8.23 0.00 42.00 4.17
2797 6589 1.959226 ACGTCCGCGAATTGTTGCT 60.959 52.632 8.23 0.00 42.00 3.91
2798 6590 1.206578 CGTCCGCGAATTGTTGCTT 59.793 52.632 8.23 0.00 41.33 3.91
2799 6591 1.059657 CGTCCGCGAATTGTTGCTTG 61.060 55.000 8.23 0.00 41.33 4.01
2800 6592 0.729140 GTCCGCGAATTGTTGCTTGG 60.729 55.000 8.23 0.00 0.00 3.61
2801 6593 1.169661 TCCGCGAATTGTTGCTTGGT 61.170 50.000 8.23 0.00 0.00 3.67
2802 6594 0.729140 CCGCGAATTGTTGCTTGGTC 60.729 55.000 8.23 0.00 0.00 4.02
2803 6595 1.059657 CGCGAATTGTTGCTTGGTCG 61.060 55.000 0.00 0.00 0.00 4.79
2804 6596 0.729140 GCGAATTGTTGCTTGGTCGG 60.729 55.000 0.00 0.00 0.00 4.79
2805 6597 0.729140 CGAATTGTTGCTTGGTCGGC 60.729 55.000 0.00 0.00 0.00 5.54
2806 6598 0.313672 GAATTGTTGCTTGGTCGGCA 59.686 50.000 0.00 0.00 37.97 5.69
2807 6599 0.031994 AATTGTTGCTTGGTCGGCAC 59.968 50.000 0.00 0.00 39.55 5.01
2808 6600 1.106351 ATTGTTGCTTGGTCGGCACA 61.106 50.000 0.00 0.00 39.55 4.57
2809 6601 1.106351 TTGTTGCTTGGTCGGCACAT 61.106 50.000 0.00 0.00 39.55 3.21
2810 6602 1.081242 GTTGCTTGGTCGGCACATG 60.081 57.895 0.00 0.00 39.55 3.21
2811 6603 2.267351 TTGCTTGGTCGGCACATGG 61.267 57.895 0.00 0.00 39.55 3.66
2812 6604 2.359850 GCTTGGTCGGCACATGGA 60.360 61.111 0.00 0.00 0.00 3.41
2813 6605 2.401766 GCTTGGTCGGCACATGGAG 61.402 63.158 0.00 0.00 0.00 3.86
2814 6606 2.359850 TTGGTCGGCACATGGAGC 60.360 61.111 0.00 0.00 0.00 4.70
2815 6607 3.189376 TTGGTCGGCACATGGAGCA 62.189 57.895 13.40 6.18 38.75 4.26
2816 6608 3.127533 GGTCGGCACATGGAGCAC 61.128 66.667 13.40 4.93 0.00 4.40
2817 6609 3.490759 GTCGGCACATGGAGCACG 61.491 66.667 13.40 13.26 0.00 5.34
2822 6614 2.741985 CACATGGAGCACGCGGAA 60.742 61.111 12.47 0.00 0.00 4.30
2823 6615 2.742372 ACATGGAGCACGCGGAAC 60.742 61.111 12.47 0.00 0.00 3.62
2824 6616 2.434884 CATGGAGCACGCGGAACT 60.435 61.111 12.47 3.87 0.00 3.01
2825 6617 2.034879 CATGGAGCACGCGGAACTT 61.035 57.895 12.47 0.00 0.00 2.66
2826 6618 2.034879 ATGGAGCACGCGGAACTTG 61.035 57.895 12.47 0.00 0.00 3.16
2827 6619 4.090057 GGAGCACGCGGAACTTGC 62.090 66.667 12.47 11.23 36.45 4.01
2828 6620 4.090057 GAGCACGCGGAACTTGCC 62.090 66.667 12.47 1.24 36.91 4.52
2837 6629 4.090057 GAACTTGCCGAGCGCCAC 62.090 66.667 2.29 0.00 36.24 5.01
2874 6666 3.969287 TGGATATCCAGCTCTATGTGC 57.031 47.619 20.98 0.00 42.01 4.57
2875 6667 3.514539 TGGATATCCAGCTCTATGTGCT 58.485 45.455 20.98 0.00 42.01 4.40
2876 6668 3.906218 TGGATATCCAGCTCTATGTGCTT 59.094 43.478 20.98 0.00 42.01 3.91
2877 6669 4.020751 TGGATATCCAGCTCTATGTGCTTC 60.021 45.833 20.98 0.00 42.01 3.86
2878 6670 2.522836 ATCCAGCTCTATGTGCTTCG 57.477 50.000 0.00 0.00 38.92 3.79
2879 6671 1.186200 TCCAGCTCTATGTGCTTCGT 58.814 50.000 0.00 0.00 38.92 3.85
2880 6672 1.135139 TCCAGCTCTATGTGCTTCGTC 59.865 52.381 0.00 0.00 38.92 4.20
2881 6673 1.565305 CAGCTCTATGTGCTTCGTCC 58.435 55.000 0.00 0.00 38.92 4.79
2882 6674 1.135915 CAGCTCTATGTGCTTCGTCCT 59.864 52.381 0.00 0.00 38.92 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.077519 ATAGCTCCACGCCGACCAC 62.078 63.158 0.00 0.00 40.39 4.16
2 3 2.758327 ATAGCTCCACGCCGACCA 60.758 61.111 0.00 0.00 40.39 4.02
3 4 2.279517 CATAGCTCCACGCCGACC 60.280 66.667 0.00 0.00 40.39 4.79
5 6 4.221422 GCCATAGCTCCACGCCGA 62.221 66.667 0.00 0.00 40.39 5.54
6 7 4.529219 TGCCATAGCTCCACGCCG 62.529 66.667 0.00 0.00 40.39 6.46
7 8 2.897350 GTGCCATAGCTCCACGCC 60.897 66.667 0.00 0.00 40.39 5.68
9 10 1.091771 CCTTGTGCCATAGCTCCACG 61.092 60.000 0.00 0.00 40.80 4.94
10 11 0.253044 TCCTTGTGCCATAGCTCCAC 59.747 55.000 0.00 0.00 40.80 4.02
11 12 0.991146 TTCCTTGTGCCATAGCTCCA 59.009 50.000 0.00 0.00 40.80 3.86
12 13 2.225467 GATTCCTTGTGCCATAGCTCC 58.775 52.381 0.00 0.00 40.80 4.70
13 14 2.225467 GGATTCCTTGTGCCATAGCTC 58.775 52.381 0.00 0.00 40.80 4.09
14 15 1.565759 TGGATTCCTTGTGCCATAGCT 59.434 47.619 3.95 0.00 40.80 3.32
17 18 1.410083 GCCTGGATTCCTTGTGCCATA 60.410 52.381 3.95 0.00 0.00 2.74
18 19 0.685458 GCCTGGATTCCTTGTGCCAT 60.685 55.000 3.95 0.00 0.00 4.40
19 20 1.304381 GCCTGGATTCCTTGTGCCA 60.304 57.895 3.95 0.00 0.00 4.92
22 23 0.323178 AGCAGCCTGGATTCCTTGTG 60.323 55.000 3.95 0.00 0.00 3.33
23 24 0.323178 CAGCAGCCTGGATTCCTTGT 60.323 55.000 3.95 0.00 35.38 3.16
26 27 1.860944 AAGCAGCAGCCTGGATTCCT 61.861 55.000 3.95 0.00 43.56 3.36
27 28 0.107017 TAAGCAGCAGCCTGGATTCC 60.107 55.000 0.00 0.00 43.56 3.01
29 30 3.491208 CTAAGCAGCAGCCTGGATT 57.509 52.632 0.00 0.00 43.56 3.01
72 73 4.202326 CGCTTAATTATGTAGACCAGGGGT 60.202 45.833 0.00 0.00 39.44 4.95
104 105 9.268268 CTGTCTATCTTTTTGGTGTTAGTTGTA 57.732 33.333 0.00 0.00 0.00 2.41
105 106 7.255139 GCTGTCTATCTTTTTGGTGTTAGTTGT 60.255 37.037 0.00 0.00 0.00 3.32
111 125 8.299570 CAAATAGCTGTCTATCTTTTTGGTGTT 58.700 33.333 0.00 0.00 34.53 3.32
118 132 5.591877 CAGGCCAAATAGCTGTCTATCTTTT 59.408 40.000 5.01 0.00 34.53 2.27
154 168 2.174639 TGAGGGGAAATGATAATGGCGT 59.825 45.455 0.00 0.00 0.00 5.68
165 179 2.158325 TGAGCAGGTTTTGAGGGGAAAT 60.158 45.455 0.00 0.00 0.00 2.17
167 181 0.850100 TGAGCAGGTTTTGAGGGGAA 59.150 50.000 0.00 0.00 0.00 3.97
172 186 2.476619 CTGTACGTGAGCAGGTTTTGAG 59.523 50.000 0.00 0.00 0.00 3.02
210 224 1.836802 TGATTATTGCACTGCTGGCA 58.163 45.000 1.98 3.29 40.00 4.92
238 252 8.506168 TTAGTTAAGGAATTGATTTCGCTGAT 57.494 30.769 0.00 0.00 34.98 2.90
277 291 2.044832 CTTACTCGCAGCTGCATGGC 62.045 60.000 36.03 11.36 42.21 4.40
278 292 2.012237 CTTACTCGCAGCTGCATGG 58.988 57.895 36.03 25.74 42.21 3.66
279 293 1.351012 GCTTACTCGCAGCTGCATG 59.649 57.895 36.03 28.22 42.21 4.06
280 294 0.674581 TTGCTTACTCGCAGCTGCAT 60.675 50.000 36.03 23.34 41.55 3.96
281 295 0.884259 TTTGCTTACTCGCAGCTGCA 60.884 50.000 36.03 22.30 41.55 4.41
282 296 0.238289 TTTTGCTTACTCGCAGCTGC 59.762 50.000 29.12 29.12 41.55 5.25
283 297 1.400242 GGTTTTGCTTACTCGCAGCTG 60.400 52.381 10.11 10.11 41.55 4.24
284 298 0.875059 GGTTTTGCTTACTCGCAGCT 59.125 50.000 0.00 0.00 41.55 4.24
285 299 0.875059 AGGTTTTGCTTACTCGCAGC 59.125 50.000 0.00 0.00 41.55 5.25
286 300 1.126846 CGAGGTTTTGCTTACTCGCAG 59.873 52.381 0.00 0.00 44.90 5.18
288 302 3.949313 CGAGGTTTTGCTTACTCGC 57.051 52.632 0.00 0.00 44.90 5.03
290 304 2.596263 GCACGAGGTTTTGCTTACTC 57.404 50.000 0.00 0.00 35.74 2.59
296 310 2.050077 GCCAGCACGAGGTTTTGC 60.050 61.111 0.00 0.00 39.16 3.68
297 311 1.781025 TTCGCCAGCACGAGGTTTTG 61.781 55.000 0.00 0.00 44.00 2.44
300 314 1.741770 GATTCGCCAGCACGAGGTT 60.742 57.895 0.00 0.00 44.00 3.50
301 315 2.125512 GATTCGCCAGCACGAGGT 60.126 61.111 0.00 0.00 44.00 3.85
302 316 2.892425 GGATTCGCCAGCACGAGG 60.892 66.667 0.00 0.00 44.00 4.63
303 317 3.257561 CGGATTCGCCAGCACGAG 61.258 66.667 0.00 0.00 44.00 4.18
326 340 4.398598 ATTTGCGTTGCGACCGGC 62.399 61.111 0.00 0.00 43.96 6.13
327 341 2.501650 CATTTGCGTTGCGACCGG 60.502 61.111 0.00 0.00 0.00 5.28
331 345 2.050533 GTGCCATTTGCGTTGCGA 60.051 55.556 0.00 0.00 45.60 5.10
333 347 1.065031 CTACGTGCCATTTGCGTTGC 61.065 55.000 0.00 0.00 45.60 4.17
334 348 0.515127 TCTACGTGCCATTTGCGTTG 59.485 50.000 0.00 0.00 45.60 4.10
337 351 0.739462 TCCTCTACGTGCCATTTGCG 60.739 55.000 0.00 0.00 45.60 4.85
338 352 0.727398 GTCCTCTACGTGCCATTTGC 59.273 55.000 0.00 0.00 41.77 3.68
339 353 1.369625 GGTCCTCTACGTGCCATTTG 58.630 55.000 0.00 0.00 0.00 2.32
340 354 0.252197 GGGTCCTCTACGTGCCATTT 59.748 55.000 0.00 0.00 0.00 2.32
343 357 1.982395 CTGGGTCCTCTACGTGCCA 60.982 63.158 0.00 0.00 0.00 4.92
344 358 2.893398 CTGGGTCCTCTACGTGCC 59.107 66.667 0.00 0.00 0.00 5.01
345 359 2.184579 GCTGGGTCCTCTACGTGC 59.815 66.667 0.00 0.00 0.00 5.34
347 361 2.341101 CGTGCTGGGTCCTCTACGT 61.341 63.158 0.00 0.00 0.00 3.57
349 363 2.184579 GCGTGCTGGGTCCTCTAC 59.815 66.667 0.00 0.00 0.00 2.59
350 364 3.075005 GGCGTGCTGGGTCCTCTA 61.075 66.667 0.00 0.00 0.00 2.43
372 386 2.607892 GGTCGTGTGAGGCAGTTGC 61.608 63.158 0.00 0.00 41.14 4.17
373 387 2.310233 CGGTCGTGTGAGGCAGTTG 61.310 63.158 0.00 0.00 0.00 3.16
374 388 2.029073 CGGTCGTGTGAGGCAGTT 59.971 61.111 0.00 0.00 0.00 3.16
375 389 3.991051 CCGGTCGTGTGAGGCAGT 61.991 66.667 0.00 0.00 0.00 4.40
380 394 4.662961 TGCTGCCGGTCGTGTGAG 62.663 66.667 1.90 0.00 0.00 3.51
381 395 4.662961 CTGCTGCCGGTCGTGTGA 62.663 66.667 1.90 0.00 0.00 3.58
386 400 4.093952 CTTTGCTGCTGCCGGTCG 62.094 66.667 13.47 0.00 38.71 4.79
387 401 4.410743 GCTTTGCTGCTGCCGGTC 62.411 66.667 13.47 0.00 38.71 4.79
501 4090 1.389784 CCGCGCCTTTTTGCTTTAATG 59.610 47.619 0.00 0.00 0.00 1.90
503 4092 0.669077 TCCGCGCCTTTTTGCTTTAA 59.331 45.000 0.00 0.00 0.00 1.52
505 4094 0.885196 TATCCGCGCCTTTTTGCTTT 59.115 45.000 0.00 0.00 0.00 3.51
508 4097 1.587946 CATTTATCCGCGCCTTTTTGC 59.412 47.619 0.00 0.00 0.00 3.68
509 4098 2.598192 CACATTTATCCGCGCCTTTTTG 59.402 45.455 0.00 0.00 0.00 2.44
510 4099 2.490115 TCACATTTATCCGCGCCTTTTT 59.510 40.909 0.00 0.00 0.00 1.94
538 4127 0.675522 ACCCCGTGCTTTGTTATCCG 60.676 55.000 0.00 0.00 0.00 4.18
556 4145 7.613146 CGTTATTAGTCACACATGAGATTCAC 58.387 38.462 0.00 0.00 34.75 3.18
564 4153 5.805486 AGTAGTGCGTTATTAGTCACACATG 59.195 40.000 0.00 0.00 32.25 3.21
566 4155 5.381174 AGTAGTGCGTTATTAGTCACACA 57.619 39.130 0.00 0.00 32.25 3.72
567 4156 6.074994 GCATAGTAGTGCGTTATTAGTCACAC 60.075 42.308 0.00 0.00 35.10 3.82
595 4188 0.501435 CGGTTGTTTCTGACGACGAC 59.499 55.000 0.00 0.00 42.63 4.34
652 4245 8.186821 GCTGTGCATCTTCCATTATTATTATCC 58.813 37.037 0.00 0.00 0.00 2.59
653 4246 8.186821 GGCTGTGCATCTTCCATTATTATTATC 58.813 37.037 0.00 0.00 0.00 1.75
654 4247 7.892241 AGGCTGTGCATCTTCCATTATTATTAT 59.108 33.333 0.00 0.00 0.00 1.28
655 4248 7.175467 CAGGCTGTGCATCTTCCATTATTATTA 59.825 37.037 6.28 0.00 0.00 0.98
665 4262 0.524862 CAACAGGCTGTGCATCTTCC 59.475 55.000 22.83 0.00 0.00 3.46
757 4374 3.764218 ACTACTTTTCTCTCCCGTCTCA 58.236 45.455 0.00 0.00 0.00 3.27
764 4381 2.853003 CGCGCTTACTACTTTTCTCTCC 59.147 50.000 5.56 0.00 0.00 3.71
766 4383 3.190953 AGACGCGCTTACTACTTTTCTCT 59.809 43.478 5.73 0.00 0.00 3.10
795 4412 3.005554 CGCTTGCTTATATCCTGATGGG 58.994 50.000 0.00 0.00 0.00 4.00
836 4457 3.310774 CAGCTGACACGCTTGCTAATAAT 59.689 43.478 8.42 0.00 38.41 1.28
837 4458 2.672874 CAGCTGACACGCTTGCTAATAA 59.327 45.455 8.42 0.00 38.41 1.40
838 4459 2.270923 CAGCTGACACGCTTGCTAATA 58.729 47.619 8.42 0.00 38.41 0.98
844 4465 0.512952 GTTACCAGCTGACACGCTTG 59.487 55.000 17.39 0.00 38.41 4.01
868 4490 4.913335 ACGTTCGCCAGAATAGAAGATA 57.087 40.909 0.00 0.00 38.80 1.98
870 4492 3.250744 CAACGTTCGCCAGAATAGAAGA 58.749 45.455 0.00 0.00 38.80 2.87
871 4493 2.348666 CCAACGTTCGCCAGAATAGAAG 59.651 50.000 0.00 0.00 38.80 2.85
872 4494 2.343101 CCAACGTTCGCCAGAATAGAA 58.657 47.619 0.00 0.00 38.80 2.10
877 4499 1.153127 AACCCAACGTTCGCCAGAA 60.153 52.632 0.00 0.00 0.00 3.02
1017 4645 2.125269 GTCGGGGCAGCGTATGTT 60.125 61.111 0.00 0.00 0.00 2.71
1018 4646 3.387091 TGTCGGGGCAGCGTATGT 61.387 61.111 0.00 0.00 0.00 2.29
1058 4686 1.143073 GTGGTTGGGTCTGGTCTCTTT 59.857 52.381 0.00 0.00 0.00 2.52
1377 5065 0.744771 GCCGGATGAAGGTCTTCCAC 60.745 60.000 5.05 2.91 39.82 4.02
1673 5376 3.006728 TGGTGTGATCCGGGGGAC 61.007 66.667 0.00 0.00 32.98 4.46
1674 5377 3.006728 GTGGTGTGATCCGGGGGA 61.007 66.667 0.00 0.00 35.55 4.81
1711 5421 1.836802 TGACCACCATCATCCATCGAA 59.163 47.619 0.00 0.00 0.00 3.71
1763 5473 0.322456 CATCCGAGAAAAGGCCACCA 60.322 55.000 5.01 0.00 0.00 4.17
1792 5502 0.254178 CATCCATCCCCATCCCGATC 59.746 60.000 0.00 0.00 0.00 3.69
1795 5505 2.759114 CCATCCATCCCCATCCCG 59.241 66.667 0.00 0.00 0.00 5.14
1798 5508 0.627986 GATCCCCATCCATCCCCATC 59.372 60.000 0.00 0.00 0.00 3.51
1799 5509 1.210204 CGATCCCCATCCATCCCCAT 61.210 60.000 0.00 0.00 0.00 4.00
1800 5510 1.847506 CGATCCCCATCCATCCCCA 60.848 63.158 0.00 0.00 0.00 4.96
1803 5513 1.421646 AGAAACGATCCCCATCCATCC 59.578 52.381 0.00 0.00 0.00 3.51
1804 5514 2.938956 AGAAACGATCCCCATCCATC 57.061 50.000 0.00 0.00 0.00 3.51
1805 5515 3.203040 AGAAAGAAACGATCCCCATCCAT 59.797 43.478 0.00 0.00 0.00 3.41
1806 5516 2.576191 AGAAAGAAACGATCCCCATCCA 59.424 45.455 0.00 0.00 0.00 3.41
1852 5562 4.270084 GCGACGAACAATCAATCATAGGAA 59.730 41.667 0.00 0.00 0.00 3.36
1856 5569 4.180817 ACAGCGACGAACAATCAATCATA 58.819 39.130 0.00 0.00 0.00 2.15
1923 5637 9.994432 GACAAAACTTGGATTGATAAGTATGAG 57.006 33.333 0.00 0.00 36.19 2.90
1934 5648 2.235016 TCGGGGACAAAACTTGGATTG 58.765 47.619 0.00 0.00 34.12 2.67
1977 5700 5.869344 TCACTAACCATTCGTGAGATCAAAG 59.131 40.000 0.00 0.00 41.60 2.77
1984 5707 4.810790 AGAAGTCACTAACCATTCGTGAG 58.189 43.478 0.00 0.00 38.24 3.51
1986 5709 4.152402 CCAAGAAGTCACTAACCATTCGTG 59.848 45.833 0.00 0.00 31.78 4.35
1987 5710 4.202326 ACCAAGAAGTCACTAACCATTCGT 60.202 41.667 0.00 0.00 0.00 3.85
1996 5723 1.684450 TGCGACACCAAGAAGTCACTA 59.316 47.619 0.00 0.00 34.48 2.74
2019 5746 0.863957 AAAACAACGGCGAAAGTGCG 60.864 50.000 16.62 0.00 35.06 5.34
2023 5750 1.486439 ATGCAAAACAACGGCGAAAG 58.514 45.000 16.62 5.04 0.00 2.62
2232 5976 2.341257 GACATGCGTCACAAGATCACT 58.659 47.619 0.00 0.00 42.13 3.41
2258 6010 0.872388 GCCGTGTAACACCTCCAAAG 59.128 55.000 0.00 0.00 35.74 2.77
2271 6023 1.533731 CCAATTTACAACGAGCCGTGT 59.466 47.619 0.94 5.00 39.99 4.49
2281 6070 2.613474 CCCTCGACCGTCCAATTTACAA 60.613 50.000 0.00 0.00 0.00 2.41
2285 6074 0.688487 TTCCCTCGACCGTCCAATTT 59.312 50.000 0.00 0.00 0.00 1.82
2293 6082 1.134818 TCACATCAATTCCCTCGACCG 60.135 52.381 0.00 0.00 0.00 4.79
2322 6114 3.421844 TCTCTCAAGATCACGGTTCTCA 58.578 45.455 0.00 0.00 0.00 3.27
2324 6116 4.464244 TGATTCTCTCAAGATCACGGTTCT 59.536 41.667 0.00 0.00 0.00 3.01
2337 6129 1.667154 CGCGGTCCCTGATTCTCTCA 61.667 60.000 0.00 0.00 0.00 3.27
2353 6145 3.623330 GGAATTCGGTACCGCGCG 61.623 66.667 29.64 25.67 39.59 6.86
2354 6146 2.509786 TGGAATTCGGTACCGCGC 60.510 61.111 29.64 16.65 39.59 6.86
2362 6154 1.363744 GCTGTCTGTCTGGAATTCGG 58.636 55.000 0.00 0.00 0.00 4.30
2383 6175 3.191371 GGTTGGAGGTTAACATCAAGCAG 59.809 47.826 20.75 0.00 0.00 4.24
2444 6236 0.901827 ATGCGACCTGTATCCACACA 59.098 50.000 0.00 0.00 0.00 3.72
2510 6302 2.996621 CTCATTCTTTCACTCGTCCACC 59.003 50.000 0.00 0.00 0.00 4.61
2511 6303 2.413453 GCTCATTCTTTCACTCGTCCAC 59.587 50.000 0.00 0.00 0.00 4.02
2512 6304 2.037121 TGCTCATTCTTTCACTCGTCCA 59.963 45.455 0.00 0.00 0.00 4.02
2513 6305 2.688507 TGCTCATTCTTTCACTCGTCC 58.311 47.619 0.00 0.00 0.00 4.79
2514 6306 4.201763 GGATTGCTCATTCTTTCACTCGTC 60.202 45.833 0.00 0.00 0.00 4.20
2515 6307 3.686726 GGATTGCTCATTCTTTCACTCGT 59.313 43.478 0.00 0.00 0.00 4.18
2516 6308 3.686241 TGGATTGCTCATTCTTTCACTCG 59.314 43.478 0.00 0.00 0.00 4.18
2517 6309 4.142513 GGTGGATTGCTCATTCTTTCACTC 60.143 45.833 0.00 0.00 0.00 3.51
2518 6310 3.760684 GGTGGATTGCTCATTCTTTCACT 59.239 43.478 0.00 0.00 0.00 3.41
2519 6311 3.760684 AGGTGGATTGCTCATTCTTTCAC 59.239 43.478 0.00 0.00 0.00 3.18
2520 6312 4.038271 AGGTGGATTGCTCATTCTTTCA 57.962 40.909 0.00 0.00 0.00 2.69
2521 6313 5.067023 CCTAAGGTGGATTGCTCATTCTTTC 59.933 44.000 0.00 0.00 0.00 2.62
2522 6314 4.952335 CCTAAGGTGGATTGCTCATTCTTT 59.048 41.667 0.00 0.00 0.00 2.52
2523 6315 4.018050 ACCTAAGGTGGATTGCTCATTCTT 60.018 41.667 0.00 0.00 32.98 2.52
2524 6316 3.525199 ACCTAAGGTGGATTGCTCATTCT 59.475 43.478 0.00 0.00 32.98 2.40
2525 6317 3.891049 ACCTAAGGTGGATTGCTCATTC 58.109 45.455 0.00 0.00 32.98 2.67
2538 6330 1.362224 ATCACAGCACCACCTAAGGT 58.638 50.000 0.00 0.00 44.48 3.50
2539 6331 2.086869 CAATCACAGCACCACCTAAGG 58.913 52.381 0.00 0.00 0.00 2.69
2540 6332 3.057969 TCAATCACAGCACCACCTAAG 57.942 47.619 0.00 0.00 0.00 2.18
2541 6333 3.264193 AGATCAATCACAGCACCACCTAA 59.736 43.478 0.00 0.00 0.00 2.69
2542 6334 2.840038 AGATCAATCACAGCACCACCTA 59.160 45.455 0.00 0.00 0.00 3.08
2543 6335 1.632409 AGATCAATCACAGCACCACCT 59.368 47.619 0.00 0.00 0.00 4.00
2544 6336 2.012673 GAGATCAATCACAGCACCACC 58.987 52.381 0.00 0.00 0.00 4.61
2545 6337 2.676839 CAGAGATCAATCACAGCACCAC 59.323 50.000 0.00 0.00 0.00 4.16
2546 6338 2.938314 GCAGAGATCAATCACAGCACCA 60.938 50.000 0.00 0.00 32.04 4.17
2547 6339 1.669779 GCAGAGATCAATCACAGCACC 59.330 52.381 0.00 0.00 32.04 5.01
2548 6340 2.630158 AGCAGAGATCAATCACAGCAC 58.370 47.619 7.36 0.00 33.63 4.40
2549 6341 3.345508 AAGCAGAGATCAATCACAGCA 57.654 42.857 7.36 0.00 33.63 4.41
2550 6342 8.768957 TTATATAAGCAGAGATCAATCACAGC 57.231 34.615 0.00 0.00 31.92 4.40
2561 6353 9.628500 TCTGTACTGTCTTTATATAAGCAGAGA 57.372 33.333 20.67 14.13 0.00 3.10
2562 6354 9.891828 CTCTGTACTGTCTTTATATAAGCAGAG 57.108 37.037 20.67 16.19 39.00 3.35
2563 6355 8.851145 CCTCTGTACTGTCTTTATATAAGCAGA 58.149 37.037 20.67 10.26 0.00 4.26
2564 6356 8.085296 CCCTCTGTACTGTCTTTATATAAGCAG 58.915 40.741 15.88 15.88 0.00 4.24
2565 6357 7.783119 TCCCTCTGTACTGTCTTTATATAAGCA 59.217 37.037 0.00 0.00 0.00 3.91
2566 6358 8.179509 TCCCTCTGTACTGTCTTTATATAAGC 57.820 38.462 0.00 0.00 0.00 3.09
2567 6359 8.301002 GCTCCCTCTGTACTGTCTTTATATAAG 58.699 40.741 0.00 0.00 0.00 1.73
2568 6360 7.040617 CGCTCCCTCTGTACTGTCTTTATATAA 60.041 40.741 0.00 0.00 0.00 0.98
2569 6361 6.430308 CGCTCCCTCTGTACTGTCTTTATATA 59.570 42.308 0.00 0.00 0.00 0.86
2570 6362 5.241949 CGCTCCCTCTGTACTGTCTTTATAT 59.758 44.000 0.00 0.00 0.00 0.86
2571 6363 4.579340 CGCTCCCTCTGTACTGTCTTTATA 59.421 45.833 0.00 0.00 0.00 0.98
2572 6364 3.381908 CGCTCCCTCTGTACTGTCTTTAT 59.618 47.826 0.00 0.00 0.00 1.40
2573 6365 2.753452 CGCTCCCTCTGTACTGTCTTTA 59.247 50.000 0.00 0.00 0.00 1.85
2574 6366 1.546476 CGCTCCCTCTGTACTGTCTTT 59.454 52.381 0.00 0.00 0.00 2.52
2575 6367 1.178276 CGCTCCCTCTGTACTGTCTT 58.822 55.000 0.00 0.00 0.00 3.01
2576 6368 1.316706 GCGCTCCCTCTGTACTGTCT 61.317 60.000 0.00 0.00 0.00 3.41
2577 6369 1.139947 GCGCTCCCTCTGTACTGTC 59.860 63.158 0.00 0.00 0.00 3.51
2578 6370 2.352032 GGCGCTCCCTCTGTACTGT 61.352 63.158 7.64 0.00 0.00 3.55
2579 6371 2.496817 GGCGCTCCCTCTGTACTG 59.503 66.667 7.64 0.00 0.00 2.74
2580 6372 3.141488 CGGCGCTCCCTCTGTACT 61.141 66.667 7.64 0.00 0.00 2.73
2581 6373 3.127352 CTCGGCGCTCCCTCTGTAC 62.127 68.421 7.64 0.00 0.00 2.90
2582 6374 2.829003 CTCGGCGCTCCCTCTGTA 60.829 66.667 7.64 0.00 0.00 2.74
2606 6398 4.538283 ATCGACCACGCGCTCTCG 62.538 66.667 5.73 9.97 39.58 4.04
2607 6399 2.652496 GATCGACCACGCGCTCTC 60.652 66.667 5.73 0.00 39.58 3.20
2608 6400 4.538283 CGATCGACCACGCGCTCT 62.538 66.667 10.26 0.00 39.58 4.09
2609 6401 4.831307 ACGATCGACCACGCGCTC 62.831 66.667 24.34 0.00 39.58 5.03
2614 6406 2.679132 GATCCCCACGATCGACCACG 62.679 65.000 24.34 4.91 38.23 4.94
2615 6407 1.067582 GATCCCCACGATCGACCAC 59.932 63.158 24.34 2.61 38.23 4.16
2616 6408 3.533720 GATCCCCACGATCGACCA 58.466 61.111 24.34 0.58 38.23 4.02
2621 6413 0.460311 AGTTCACGATCCCCACGATC 59.540 55.000 0.00 0.00 43.58 3.69
2622 6414 0.175760 CAGTTCACGATCCCCACGAT 59.824 55.000 0.00 0.00 34.70 3.73
2623 6415 1.589630 CAGTTCACGATCCCCACGA 59.410 57.895 0.00 0.00 34.70 4.35
2624 6416 1.447838 CCAGTTCACGATCCCCACG 60.448 63.158 0.00 0.00 0.00 4.94
2625 6417 0.108138 CTCCAGTTCACGATCCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
2626 6418 1.899437 GCTCCAGTTCACGATCCCCA 61.899 60.000 0.00 0.00 0.00 4.96
2627 6419 1.153349 GCTCCAGTTCACGATCCCC 60.153 63.158 0.00 0.00 0.00 4.81
2628 6420 1.519455 CGCTCCAGTTCACGATCCC 60.519 63.158 0.00 0.00 0.00 3.85
2629 6421 1.078759 CACGCTCCAGTTCACGATCC 61.079 60.000 0.00 0.00 0.00 3.36
2630 6422 1.687494 GCACGCTCCAGTTCACGATC 61.687 60.000 0.00 0.00 0.00 3.69
2631 6423 1.738099 GCACGCTCCAGTTCACGAT 60.738 57.895 0.00 0.00 0.00 3.73
2632 6424 2.355837 GCACGCTCCAGTTCACGA 60.356 61.111 0.00 0.00 0.00 4.35
2633 6425 3.767230 CGCACGCTCCAGTTCACG 61.767 66.667 0.00 0.00 0.00 4.35
2634 6426 3.414700 CCGCACGCTCCAGTTCAC 61.415 66.667 0.00 0.00 0.00 3.18
2635 6427 4.680237 CCCGCACGCTCCAGTTCA 62.680 66.667 0.00 0.00 0.00 3.18
2636 6428 4.373116 TCCCGCACGCTCCAGTTC 62.373 66.667 0.00 0.00 0.00 3.01
2637 6429 4.681978 GTCCCGCACGCTCCAGTT 62.682 66.667 0.00 0.00 0.00 3.16
2639 6431 4.457496 ATGTCCCGCACGCTCCAG 62.457 66.667 0.00 0.00 0.00 3.86
2640 6432 4.758251 CATGTCCCGCACGCTCCA 62.758 66.667 0.00 0.00 0.00 3.86
2658 6450 4.222847 CTAGAACCCCCGCTCGCC 62.223 72.222 0.00 0.00 0.00 5.54
2659 6451 3.427598 GACTAGAACCCCCGCTCGC 62.428 68.421 0.00 0.00 0.00 5.03
2660 6452 0.465097 TAGACTAGAACCCCCGCTCG 60.465 60.000 0.00 0.00 0.00 5.03
2661 6453 1.998222 ATAGACTAGAACCCCCGCTC 58.002 55.000 0.00 0.00 0.00 5.03
2662 6454 2.176364 TGTATAGACTAGAACCCCCGCT 59.824 50.000 0.00 0.00 0.00 5.52
2663 6455 2.557490 CTGTATAGACTAGAACCCCCGC 59.443 54.545 0.00 0.00 0.00 6.13
2664 6456 3.830121 ACTGTATAGACTAGAACCCCCG 58.170 50.000 0.00 0.00 0.00 5.73
2665 6457 6.608808 TGTTAACTGTATAGACTAGAACCCCC 59.391 42.308 7.22 0.00 0.00 5.40
2666 6458 7.417229 GGTGTTAACTGTATAGACTAGAACCCC 60.417 44.444 7.22 0.00 0.00 4.95
2667 6459 7.417229 GGGTGTTAACTGTATAGACTAGAACCC 60.417 44.444 7.22 6.24 33.76 4.11
2668 6460 7.341512 AGGGTGTTAACTGTATAGACTAGAACC 59.658 40.741 7.22 0.59 0.00 3.62
2669 6461 8.189460 CAGGGTGTTAACTGTATAGACTAGAAC 58.811 40.741 7.22 0.00 0.00 3.01
2670 6462 7.147949 GCAGGGTGTTAACTGTATAGACTAGAA 60.148 40.741 7.22 0.00 37.07 2.10
2671 6463 6.320672 GCAGGGTGTTAACTGTATAGACTAGA 59.679 42.308 7.22 0.00 37.07 2.43
2672 6464 6.461231 GGCAGGGTGTTAACTGTATAGACTAG 60.461 46.154 7.22 0.00 37.07 2.57
2673 6465 5.361857 GGCAGGGTGTTAACTGTATAGACTA 59.638 44.000 7.22 0.00 37.07 2.59
2674 6466 4.161754 GGCAGGGTGTTAACTGTATAGACT 59.838 45.833 7.22 0.00 37.07 3.24
2675 6467 4.439968 GGCAGGGTGTTAACTGTATAGAC 58.560 47.826 7.22 0.00 37.07 2.59
2676 6468 3.131577 CGGCAGGGTGTTAACTGTATAGA 59.868 47.826 7.22 0.00 37.07 1.98
2677 6469 3.454375 CGGCAGGGTGTTAACTGTATAG 58.546 50.000 7.22 0.00 37.07 1.31
2678 6470 2.419021 GCGGCAGGGTGTTAACTGTATA 60.419 50.000 7.22 0.00 37.07 1.47
2679 6471 1.677820 GCGGCAGGGTGTTAACTGTAT 60.678 52.381 7.22 0.00 37.07 2.29
2680 6472 0.320946 GCGGCAGGGTGTTAACTGTA 60.321 55.000 7.22 0.00 37.07 2.74
2681 6473 1.599797 GCGGCAGGGTGTTAACTGT 60.600 57.895 7.22 0.00 37.07 3.55
2682 6474 1.577328 CTGCGGCAGGGTGTTAACTG 61.577 60.000 22.11 0.00 37.76 3.16
2683 6475 1.302511 CTGCGGCAGGGTGTTAACT 60.303 57.895 22.11 0.00 0.00 2.24
2684 6476 1.170290 AACTGCGGCAGGGTGTTAAC 61.170 55.000 31.38 0.00 35.51 2.01
2685 6477 1.149627 AACTGCGGCAGGGTGTTAA 59.850 52.632 31.38 0.00 35.51 2.01
2686 6478 1.599518 CAACTGCGGCAGGGTGTTA 60.600 57.895 31.38 0.00 35.51 2.41
2687 6479 2.902423 TTCAACTGCGGCAGGGTGTT 62.902 55.000 31.38 16.13 35.51 3.32
2688 6480 3.414136 TTCAACTGCGGCAGGGTGT 62.414 57.895 31.38 10.78 35.51 4.16
2689 6481 2.594303 TTCAACTGCGGCAGGGTG 60.594 61.111 31.38 26.56 35.51 4.61
2690 6482 2.281761 CTTCAACTGCGGCAGGGT 60.282 61.111 31.38 17.56 35.51 4.34
2691 6483 3.741476 GCTTCAACTGCGGCAGGG 61.741 66.667 31.38 22.86 35.51 4.45
2692 6484 2.262471 GATGCTTCAACTGCGGCAGG 62.262 60.000 31.38 16.33 38.11 4.85
2693 6485 1.136147 GATGCTTCAACTGCGGCAG 59.864 57.895 27.43 27.43 38.11 4.85
2694 6486 2.334946 GGATGCTTCAACTGCGGCA 61.335 57.895 1.29 1.29 39.06 5.69
2695 6487 2.486966 GGATGCTTCAACTGCGGC 59.513 61.111 1.64 0.00 0.00 6.53
2696 6488 2.753966 CCGGATGCTTCAACTGCGG 61.754 63.158 0.00 0.00 0.00 5.69
2697 6489 2.753966 CCCGGATGCTTCAACTGCG 61.754 63.158 0.73 0.00 0.00 5.18
2698 6490 2.409870 CCCCGGATGCTTCAACTGC 61.410 63.158 0.73 0.00 0.00 4.40
2699 6491 1.750399 CCCCCGGATGCTTCAACTG 60.750 63.158 0.73 0.00 0.00 3.16
2700 6492 2.677228 CCCCCGGATGCTTCAACT 59.323 61.111 0.73 0.00 0.00 3.16
2714 6506 1.152756 AGTTTATGCATCCGCCCCC 60.153 57.895 0.19 0.00 37.32 5.40
2715 6507 1.455383 CCAGTTTATGCATCCGCCCC 61.455 60.000 0.19 0.00 37.32 5.80
2716 6508 0.465460 TCCAGTTTATGCATCCGCCC 60.465 55.000 0.19 0.00 37.32 6.13
2717 6509 1.065551 GTTCCAGTTTATGCATCCGCC 59.934 52.381 0.19 0.00 37.32 6.13
2718 6510 1.268032 CGTTCCAGTTTATGCATCCGC 60.268 52.381 0.19 0.00 39.24 5.54
2719 6511 2.276201 TCGTTCCAGTTTATGCATCCG 58.724 47.619 0.19 0.00 0.00 4.18
2720 6512 4.695217 TTTCGTTCCAGTTTATGCATCC 57.305 40.909 0.19 0.00 0.00 3.51
2721 6513 6.555315 AGATTTTCGTTCCAGTTTATGCATC 58.445 36.000 0.19 0.00 0.00 3.91
2722 6514 6.515272 AGATTTTCGTTCCAGTTTATGCAT 57.485 33.333 3.79 3.79 0.00 3.96
2723 6515 5.957842 AGATTTTCGTTCCAGTTTATGCA 57.042 34.783 0.00 0.00 0.00 3.96
2724 6516 6.378582 TCAAGATTTTCGTTCCAGTTTATGC 58.621 36.000 0.00 0.00 0.00 3.14
2725 6517 8.690840 GTTTCAAGATTTTCGTTCCAGTTTATG 58.309 33.333 0.00 0.00 0.00 1.90
2726 6518 7.589954 CGTTTCAAGATTTTCGTTCCAGTTTAT 59.410 33.333 0.00 0.00 0.00 1.40
2727 6519 6.908284 CGTTTCAAGATTTTCGTTCCAGTTTA 59.092 34.615 0.00 0.00 0.00 2.01
2728 6520 5.741982 CGTTTCAAGATTTTCGTTCCAGTTT 59.258 36.000 0.00 0.00 0.00 2.66
2729 6521 5.270853 CGTTTCAAGATTTTCGTTCCAGTT 58.729 37.500 0.00 0.00 0.00 3.16
2730 6522 4.788521 GCGTTTCAAGATTTTCGTTCCAGT 60.789 41.667 0.00 0.00 0.00 4.00
2731 6523 3.664025 GCGTTTCAAGATTTTCGTTCCAG 59.336 43.478 0.00 0.00 0.00 3.86
2732 6524 3.549221 GGCGTTTCAAGATTTTCGTTCCA 60.549 43.478 0.00 0.00 0.00 3.53
2733 6525 2.977829 GGCGTTTCAAGATTTTCGTTCC 59.022 45.455 0.00 0.00 0.00 3.62
2734 6526 2.650297 CGGCGTTTCAAGATTTTCGTTC 59.350 45.455 0.00 0.00 0.00 3.95
2735 6527 2.032426 ACGGCGTTTCAAGATTTTCGTT 59.968 40.909 6.77 0.00 0.00 3.85
2736 6528 1.600485 ACGGCGTTTCAAGATTTTCGT 59.400 42.857 6.77 0.00 0.00 3.85
2737 6529 1.969256 CACGGCGTTTCAAGATTTTCG 59.031 47.619 11.19 0.00 0.00 3.46
2738 6530 2.287368 ACCACGGCGTTTCAAGATTTTC 60.287 45.455 11.19 0.00 0.00 2.29
2739 6531 1.679153 ACCACGGCGTTTCAAGATTTT 59.321 42.857 11.19 0.00 0.00 1.82
2740 6532 1.265905 GACCACGGCGTTTCAAGATTT 59.734 47.619 11.19 0.00 0.00 2.17
2741 6533 0.872388 GACCACGGCGTTTCAAGATT 59.128 50.000 11.19 0.00 0.00 2.40
2742 6534 1.289109 CGACCACGGCGTTTCAAGAT 61.289 55.000 11.19 0.00 35.72 2.40
2743 6535 1.952133 CGACCACGGCGTTTCAAGA 60.952 57.895 11.19 0.00 35.72 3.02
2744 6536 2.549282 CGACCACGGCGTTTCAAG 59.451 61.111 11.19 0.00 35.72 3.02
2761 6553 2.224159 TGCTCACCAAGGGTCTCCC 61.224 63.158 0.00 0.00 45.90 4.30
2762 6554 1.003233 GTGCTCACCAAGGGTCTCC 60.003 63.158 0.00 0.00 31.02 3.71
2763 6555 1.374758 CGTGCTCACCAAGGGTCTC 60.375 63.158 0.00 0.00 31.02 3.36
2764 6556 2.100879 GACGTGCTCACCAAGGGTCT 62.101 60.000 0.00 0.00 31.02 3.85
2765 6557 1.668151 GACGTGCTCACCAAGGGTC 60.668 63.158 0.00 0.00 31.02 4.46
2766 6558 2.426023 GACGTGCTCACCAAGGGT 59.574 61.111 0.00 0.00 35.62 4.34
2767 6559 2.358737 GGACGTGCTCACCAAGGG 60.359 66.667 0.00 0.00 0.00 3.95
2768 6560 2.738521 CGGACGTGCTCACCAAGG 60.739 66.667 5.27 0.00 0.00 3.61
2769 6561 3.414700 GCGGACGTGCTCACCAAG 61.415 66.667 5.27 0.00 0.00 3.61
2773 6565 2.380410 AATTCGCGGACGTGCTCAC 61.380 57.895 6.13 0.00 41.18 3.51
2774 6566 2.048597 AATTCGCGGACGTGCTCA 60.049 55.556 6.13 0.00 41.18 4.26
2775 6567 1.897398 AACAATTCGCGGACGTGCTC 61.897 55.000 6.13 0.00 41.18 4.26
2776 6568 1.959226 AACAATTCGCGGACGTGCT 60.959 52.632 6.13 0.00 41.18 4.40
2777 6569 1.792057 CAACAATTCGCGGACGTGC 60.792 57.895 6.13 0.00 41.18 5.34
2778 6570 1.792057 GCAACAATTCGCGGACGTG 60.792 57.895 6.13 1.57 41.18 4.49
2779 6571 1.503818 AAGCAACAATTCGCGGACGT 61.504 50.000 6.13 0.00 41.18 4.34
2780 6572 1.059657 CAAGCAACAATTCGCGGACG 61.060 55.000 6.13 0.00 42.01 4.79
2781 6573 0.729140 CCAAGCAACAATTCGCGGAC 60.729 55.000 6.13 0.00 0.00 4.79
2782 6574 1.169661 ACCAAGCAACAATTCGCGGA 61.170 50.000 6.13 0.00 0.00 5.54
2783 6575 0.729140 GACCAAGCAACAATTCGCGG 60.729 55.000 6.13 0.00 0.00 6.46
2784 6576 1.059657 CGACCAAGCAACAATTCGCG 61.060 55.000 0.00 0.00 0.00 5.87
2785 6577 0.729140 CCGACCAAGCAACAATTCGC 60.729 55.000 0.00 0.00 0.00 4.70
2786 6578 0.729140 GCCGACCAAGCAACAATTCG 60.729 55.000 0.00 0.00 0.00 3.34
2787 6579 0.313672 TGCCGACCAAGCAACAATTC 59.686 50.000 0.00 0.00 37.28 2.17
2788 6580 0.031994 GTGCCGACCAAGCAACAATT 59.968 50.000 0.00 0.00 43.02 2.32
2789 6581 1.106351 TGTGCCGACCAAGCAACAAT 61.106 50.000 0.00 0.00 43.02 2.71
2790 6582 1.106351 ATGTGCCGACCAAGCAACAA 61.106 50.000 0.00 0.00 43.02 2.83
2791 6583 1.528076 ATGTGCCGACCAAGCAACA 60.528 52.632 0.00 0.00 43.02 3.33
2792 6584 1.081242 CATGTGCCGACCAAGCAAC 60.081 57.895 0.00 0.00 43.02 4.17
2793 6585 2.267351 CCATGTGCCGACCAAGCAA 61.267 57.895 0.00 0.00 43.02 3.91
2794 6586 2.672651 CCATGTGCCGACCAAGCA 60.673 61.111 0.00 0.00 38.08 3.91
2795 6587 2.359850 TCCATGTGCCGACCAAGC 60.360 61.111 0.00 0.00 0.00 4.01
2796 6588 2.401766 GCTCCATGTGCCGACCAAG 61.402 63.158 0.00 0.00 0.00 3.61
2797 6589 2.359850 GCTCCATGTGCCGACCAA 60.360 61.111 0.00 0.00 0.00 3.67
2798 6590 3.635191 TGCTCCATGTGCCGACCA 61.635 61.111 5.64 0.00 0.00 4.02
2799 6591 3.127533 GTGCTCCATGTGCCGACC 61.128 66.667 5.64 0.00 0.00 4.79
2800 6592 3.490759 CGTGCTCCATGTGCCGAC 61.491 66.667 5.64 0.00 0.00 4.79
2805 6597 2.741985 TTCCGCGTGCTCCATGTG 60.742 61.111 4.92 0.00 0.00 3.21
2806 6598 2.731691 AAGTTCCGCGTGCTCCATGT 62.732 55.000 4.92 0.00 0.00 3.21
2807 6599 2.034879 AAGTTCCGCGTGCTCCATG 61.035 57.895 4.92 0.00 0.00 3.66
2808 6600 2.034879 CAAGTTCCGCGTGCTCCAT 61.035 57.895 4.92 0.00 0.00 3.41
2809 6601 2.664851 CAAGTTCCGCGTGCTCCA 60.665 61.111 4.92 0.00 0.00 3.86
2810 6602 4.090057 GCAAGTTCCGCGTGCTCC 62.090 66.667 10.98 0.00 46.59 4.70
2834 6626 4.351938 TCGTCCGCGAACAGGTGG 62.352 66.667 8.23 0.00 44.92 4.61
2841 6633 4.464745 GGATATCCACTTCGTCCGCGAA 62.465 54.545 17.34 2.50 44.15 4.70
2842 6634 0.309922 GATATCCACTTCGTCCGCGA 59.690 55.000 8.23 0.00 46.36 5.87
2843 6635 0.663568 GGATATCCACTTCGTCCGCG 60.664 60.000 17.34 0.00 36.21 6.46
2844 6636 0.387929 TGGATATCCACTTCGTCCGC 59.612 55.000 20.98 0.00 42.01 5.54
2845 6637 1.603172 GCTGGATATCCACTTCGTCCG 60.603 57.143 20.98 9.47 42.01 4.79
2846 6638 1.689273 AGCTGGATATCCACTTCGTCC 59.311 52.381 20.98 3.61 42.01 4.79
2847 6639 2.625790 AGAGCTGGATATCCACTTCGTC 59.374 50.000 20.98 12.00 42.01 4.20
2848 6640 2.672098 AGAGCTGGATATCCACTTCGT 58.328 47.619 20.98 8.94 42.01 3.85
2849 6641 4.219507 ACATAGAGCTGGATATCCACTTCG 59.780 45.833 20.98 12.02 42.01 3.79
2850 6642 5.477510 CACATAGAGCTGGATATCCACTTC 58.522 45.833 20.98 18.85 42.01 3.01
2851 6643 4.262808 GCACATAGAGCTGGATATCCACTT 60.263 45.833 20.98 11.39 42.01 3.16
2852 6644 3.260380 GCACATAGAGCTGGATATCCACT 59.740 47.826 20.98 20.56 42.01 4.00
2853 6645 3.260380 AGCACATAGAGCTGGATATCCAC 59.740 47.826 20.98 16.50 42.01 4.02
2854 6646 3.514539 AGCACATAGAGCTGGATATCCA 58.485 45.455 23.17 23.17 45.30 3.41
2855 6647 4.502962 GAAGCACATAGAGCTGGATATCC 58.497 47.826 15.39 15.39 42.53 2.59
2856 6648 4.172505 CGAAGCACATAGAGCTGGATATC 58.827 47.826 0.00 0.00 42.53 1.63
2857 6649 3.576118 ACGAAGCACATAGAGCTGGATAT 59.424 43.478 0.00 0.00 42.53 1.63
2858 6650 2.959030 ACGAAGCACATAGAGCTGGATA 59.041 45.455 0.00 0.00 42.53 2.59
2859 6651 1.759445 ACGAAGCACATAGAGCTGGAT 59.241 47.619 0.00 0.00 42.53 3.41
2860 6652 1.135139 GACGAAGCACATAGAGCTGGA 59.865 52.381 0.00 0.00 42.53 3.86
2861 6653 1.565305 GACGAAGCACATAGAGCTGG 58.435 55.000 0.00 0.00 42.53 4.85
2862 6654 1.135915 AGGACGAAGCACATAGAGCTG 59.864 52.381 0.00 0.00 42.53 4.24
2863 6655 1.479709 AGGACGAAGCACATAGAGCT 58.520 50.000 0.00 0.00 45.97 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.