Multiple sequence alignment - TraesCS6D01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G287800 chr6D 100.000 4392 0 0 1 4392 397081345 397085736 0.000000e+00 8111.0
1 TraesCS6D01G287800 chr6A 92.489 3395 113 56 785 4130 543394615 543397916 0.000000e+00 4726.0
2 TraesCS6D01G287800 chr6A 83.942 137 4 6 554 674 543394418 543394552 9.980000e-22 115.0
3 TraesCS6D01G287800 chr6B 94.044 3022 86 33 948 3935 593711879 593714840 0.000000e+00 4497.0
4 TraesCS6D01G287800 chr6B 88.024 835 42 24 145 956 593711049 593711848 0.000000e+00 935.0
5 TraesCS6D01G287800 chr6B 86.070 201 9 6 3919 4100 593714863 593715063 9.640000e-47 198.0
6 TraesCS6D01G287800 chr6B 86.726 113 6 2 4116 4219 593716065 593716177 2.780000e-22 117.0
7 TraesCS6D01G287800 chr6B 97.561 41 1 0 1675 1715 142988907 142988867 2.190000e-08 71.3
8 TraesCS6D01G287800 chr7B 88.503 1122 96 20 993 2095 109702389 109703496 0.000000e+00 1327.0
9 TraesCS6D01G287800 chr7B 87.352 253 32 0 1000 1252 664106997 664107249 1.550000e-74 291.0
10 TraesCS6D01G287800 chr7B 84.490 245 26 3 2246 2490 109703638 109703870 9.500000e-57 231.0
11 TraesCS6D01G287800 chr7B 89.820 167 17 0 2792 2958 109704173 109704339 9.570000e-52 215.0
12 TraesCS6D01G287800 chr7B 94.309 123 7 0 2368 2490 664108620 664108742 5.800000e-44 189.0
13 TraesCS6D01G287800 chr7B 98.837 86 1 0 3158 3243 109704632 109704717 2.120000e-33 154.0
14 TraesCS6D01G287800 chr7D 88.403 1121 99 18 993 2095 146862913 146864020 0.000000e+00 1321.0
15 TraesCS6D01G287800 chr7D 83.209 268 30 6 2246 2512 146864162 146864415 9.500000e-57 231.0
16 TraesCS6D01G287800 chr7D 78.919 370 48 23 2597 2958 146864488 146864835 1.590000e-54 224.0
17 TraesCS6D01G287800 chr7D 94.309 123 7 0 2368 2490 589514301 589514423 5.800000e-44 189.0
18 TraesCS6D01G287800 chr7D 98.837 86 1 0 3158 3243 146865133 146865218 2.120000e-33 154.0
19 TraesCS6D01G287800 chr7A 88.068 1123 102 17 993 2095 148415099 148416209 0.000000e+00 1303.0
20 TraesCS6D01G287800 chr7A 76.944 733 105 39 2246 2958 148416357 148417045 4.180000e-95 359.0
21 TraesCS6D01G287800 chr7A 93.496 123 8 0 2368 2490 681013349 681013227 2.700000e-42 183.0
22 TraesCS6D01G287800 chr7A 98.837 86 1 0 3158 3243 148417339 148417424 2.120000e-33 154.0
23 TraesCS6D01G287800 chr7A 93.243 74 5 0 3321 3394 148417554 148417627 4.640000e-20 110.0
24 TraesCS6D01G287800 chr7A 97.561 41 1 0 1675 1715 637052827 637052787 2.190000e-08 71.3
25 TraesCS6D01G287800 chr4D 81.518 817 125 24 1001 1798 109469594 109470403 0.000000e+00 649.0
26 TraesCS6D01G287800 chr4A 81.341 820 127 22 1001 1801 466941639 466940827 1.030000e-180 643.0
27 TraesCS6D01G287800 chr4B 81.273 817 127 23 1001 1798 170927034 170927843 4.790000e-179 638.0
28 TraesCS6D01G287800 chr3A 90.152 132 13 0 2370 2501 432041807 432041938 5.840000e-39 172.0
29 TraesCS6D01G287800 chr5B 97.561 41 1 0 1675 1715 447194713 447194753 2.190000e-08 71.3
30 TraesCS6D01G287800 chr1B 97.561 41 1 0 1675 1715 269297763 269297723 2.190000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G287800 chr6D 397081345 397085736 4391 False 8111.00 8111 100.0000 1 4392 1 chr6D.!!$F1 4391
1 TraesCS6D01G287800 chr6A 543394418 543397916 3498 False 2420.50 4726 88.2155 554 4130 2 chr6A.!!$F1 3576
2 TraesCS6D01G287800 chr6B 593711049 593716177 5128 False 1436.75 4497 88.7160 145 4219 4 chr6B.!!$F1 4074
3 TraesCS6D01G287800 chr7B 109702389 109704717 2328 False 481.75 1327 90.4125 993 3243 4 chr7B.!!$F1 2250
4 TraesCS6D01G287800 chr7B 664106997 664108742 1745 False 240.00 291 90.8305 1000 2490 2 chr7B.!!$F2 1490
5 TraesCS6D01G287800 chr7D 146862913 146865218 2305 False 482.50 1321 87.3420 993 3243 4 chr7D.!!$F2 2250
6 TraesCS6D01G287800 chr7A 148415099 148417627 2528 False 481.50 1303 89.2730 993 3394 4 chr7A.!!$F1 2401
7 TraesCS6D01G287800 chr4D 109469594 109470403 809 False 649.00 649 81.5180 1001 1798 1 chr4D.!!$F1 797
8 TraesCS6D01G287800 chr4A 466940827 466941639 812 True 643.00 643 81.3410 1001 1801 1 chr4A.!!$R1 800
9 TraesCS6D01G287800 chr4B 170927034 170927843 809 False 638.00 638 81.2730 1001 1798 1 chr4B.!!$F1 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.120377 TCACCACCCCAGGTAGGATT 59.880 55.000 8.61 0.00 40.77 3.01 F
21 22 0.120377 ACCACCCCAGGTAGGATTGA 59.880 55.000 8.61 0.00 40.98 2.57 F
938 982 0.320247 CGCAAAGAGTGAGCTGAGGT 60.320 55.000 0.00 0.00 0.00 3.85 F
946 991 1.842920 TGAGCTGAGGTCCAAGCCA 60.843 57.895 9.40 7.87 0.00 4.75 F
2344 2721 1.969589 GGCGGACCCGAACAACAAT 60.970 57.895 13.24 0.00 42.83 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1604 2.741092 GTGTCGGGGAACTGCTCA 59.259 61.111 0.0 0.0 36.33 4.26 R
1557 1679 3.989698 CTCGATGGCGTTGCTCCGT 62.990 63.158 0.0 0.0 38.98 4.69 R
2517 2951 0.373716 GATTGGTTGGTTAGCGAGCG 59.626 55.000 0.0 0.0 0.00 5.03 R
2520 2954 0.391927 CCGGATTGGTTGGTTAGCGA 60.392 55.000 0.0 0.0 0.00 4.93 R
4275 5979 0.041982 GAGAAGACCAGAGGGAGGGT 59.958 60.000 0.0 0.0 40.96 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.289408 TCACCACCCCAGGTAGGA 58.711 61.111 8.61 0.00 40.77 2.94
18 19 1.794688 TCACCACCCCAGGTAGGAT 59.205 57.895 8.61 0.00 40.77 3.24
19 20 0.120377 TCACCACCCCAGGTAGGATT 59.880 55.000 8.61 0.00 40.77 3.01
20 21 0.255890 CACCACCCCAGGTAGGATTG 59.744 60.000 8.61 0.00 40.77 2.67
21 22 0.120377 ACCACCCCAGGTAGGATTGA 59.880 55.000 8.61 0.00 40.98 2.57
22 23 1.275002 ACCACCCCAGGTAGGATTGAT 60.275 52.381 8.61 0.00 40.98 2.57
23 24 1.852965 CCACCCCAGGTAGGATTGATT 59.147 52.381 0.00 0.00 41.22 2.57
24 25 2.244769 CCACCCCAGGTAGGATTGATTT 59.755 50.000 0.00 0.00 41.22 2.17
25 26 3.461831 CCACCCCAGGTAGGATTGATTTA 59.538 47.826 0.00 0.00 41.22 1.40
26 27 4.079443 CCACCCCAGGTAGGATTGATTTAA 60.079 45.833 0.00 0.00 41.22 1.52
27 28 5.515106 CACCCCAGGTAGGATTGATTTAAA 58.485 41.667 0.00 0.00 41.22 1.52
28 29 5.955355 CACCCCAGGTAGGATTGATTTAAAA 59.045 40.000 0.00 0.00 41.22 1.52
29 30 6.096846 CACCCCAGGTAGGATTGATTTAAAAG 59.903 42.308 0.00 0.00 41.22 2.27
30 31 5.069119 CCCCAGGTAGGATTGATTTAAAAGC 59.931 44.000 0.00 0.00 41.22 3.51
31 32 5.656416 CCCAGGTAGGATTGATTTAAAAGCA 59.344 40.000 0.00 0.00 41.22 3.91
32 33 6.324770 CCCAGGTAGGATTGATTTAAAAGCAT 59.675 38.462 0.00 0.00 41.22 3.79
33 34 7.428826 CCAGGTAGGATTGATTTAAAAGCATC 58.571 38.462 0.00 0.00 41.22 3.91
34 35 7.428826 CAGGTAGGATTGATTTAAAAGCATCC 58.571 38.462 12.10 12.10 0.00 3.51
35 36 6.551227 AGGTAGGATTGATTTAAAAGCATCCC 59.449 38.462 14.76 9.90 30.13 3.85
36 37 5.520376 AGGATTGATTTAAAAGCATCCCG 57.480 39.130 14.76 0.00 30.13 5.14
37 38 4.342092 AGGATTGATTTAAAAGCATCCCGG 59.658 41.667 14.76 0.00 30.13 5.73
38 39 4.099419 GGATTGATTTAAAAGCATCCCGGT 59.901 41.667 0.00 0.00 0.00 5.28
39 40 5.395214 GGATTGATTTAAAAGCATCCCGGTT 60.395 40.000 0.00 0.00 36.73 4.44
41 42 5.066968 TGATTTAAAAGCATCCCGGTTTC 57.933 39.130 0.00 0.00 44.42 2.78
42 43 4.524714 TGATTTAAAAGCATCCCGGTTTCA 59.475 37.500 0.00 0.00 44.42 2.69
43 44 5.186797 TGATTTAAAAGCATCCCGGTTTCAT 59.813 36.000 0.00 0.00 44.42 2.57
44 45 6.378564 TGATTTAAAAGCATCCCGGTTTCATA 59.621 34.615 0.00 0.00 44.42 2.15
45 46 6.783708 TTTAAAAGCATCCCGGTTTCATAT 57.216 33.333 0.00 0.00 44.42 1.78
46 47 6.783708 TTAAAAGCATCCCGGTTTCATATT 57.216 33.333 0.00 0.00 44.42 1.28
47 48 4.918810 AAAGCATCCCGGTTTCATATTC 57.081 40.909 0.00 0.00 41.43 1.75
48 49 3.864789 AGCATCCCGGTTTCATATTCT 57.135 42.857 0.00 0.00 0.00 2.40
49 50 4.170468 AGCATCCCGGTTTCATATTCTT 57.830 40.909 0.00 0.00 0.00 2.52
50 51 4.536765 AGCATCCCGGTTTCATATTCTTT 58.463 39.130 0.00 0.00 0.00 2.52
51 52 4.956075 AGCATCCCGGTTTCATATTCTTTT 59.044 37.500 0.00 0.00 0.00 2.27
52 53 5.422012 AGCATCCCGGTTTCATATTCTTTTT 59.578 36.000 0.00 0.00 0.00 1.94
74 75 1.873698 TTTTCTGAGGGTCGGTTTCG 58.126 50.000 0.00 0.00 37.82 3.46
75 76 0.754472 TTTCTGAGGGTCGGTTTCGT 59.246 50.000 0.00 0.00 37.69 3.85
76 77 1.619654 TTCTGAGGGTCGGTTTCGTA 58.380 50.000 0.00 0.00 37.69 3.43
77 78 1.843368 TCTGAGGGTCGGTTTCGTAT 58.157 50.000 0.00 0.00 37.69 3.06
78 79 2.173519 TCTGAGGGTCGGTTTCGTATT 58.826 47.619 0.00 0.00 37.69 1.89
79 80 2.165030 TCTGAGGGTCGGTTTCGTATTC 59.835 50.000 0.00 0.00 37.69 1.75
80 81 1.135315 TGAGGGTCGGTTTCGTATTCG 60.135 52.381 0.00 0.00 37.69 3.34
81 82 1.133025 GAGGGTCGGTTTCGTATTCGA 59.867 52.381 0.00 0.00 44.66 3.71
93 94 4.295857 TCGTATTCGAATTGTGGATCGA 57.704 40.909 17.19 11.72 45.48 3.59
94 95 4.039703 TCGTATTCGAATTGTGGATCGAC 58.960 43.478 17.19 3.96 46.65 4.20
95 96 3.121795 CGTATTCGAATTGTGGATCGACG 60.122 47.826 17.19 12.42 46.65 5.12
96 97 1.635844 TTCGAATTGTGGATCGACGG 58.364 50.000 3.26 0.00 46.65 4.79
97 98 0.804544 TCGAATTGTGGATCGACGGC 60.805 55.000 3.26 0.00 42.61 5.68
98 99 1.081556 CGAATTGTGGATCGACGGCA 61.082 55.000 3.26 0.00 41.43 5.69
99 100 0.373716 GAATTGTGGATCGACGGCAC 59.626 55.000 3.26 0.00 0.00 5.01
114 115 1.408422 GGCACGTGTTTCTTCATTGC 58.592 50.000 18.38 0.00 0.00 3.56
115 116 1.268999 GGCACGTGTTTCTTCATTGCA 60.269 47.619 18.38 0.00 33.64 4.08
116 117 1.780860 GCACGTGTTTCTTCATTGCAC 59.219 47.619 18.38 0.00 32.84 4.57
117 118 2.541588 GCACGTGTTTCTTCATTGCACT 60.542 45.455 18.38 0.00 32.84 4.40
118 119 3.303725 GCACGTGTTTCTTCATTGCACTA 60.304 43.478 18.38 0.00 32.84 2.74
119 120 4.613622 GCACGTGTTTCTTCATTGCACTAT 60.614 41.667 18.38 0.00 32.84 2.12
120 121 5.390461 GCACGTGTTTCTTCATTGCACTATA 60.390 40.000 18.38 0.00 32.84 1.31
121 122 6.675486 GCACGTGTTTCTTCATTGCACTATAT 60.675 38.462 18.38 0.00 32.84 0.86
122 123 6.684131 CACGTGTTTCTTCATTGCACTATATG 59.316 38.462 7.58 0.00 0.00 1.78
140 141 9.897744 CACTATATGCAACCGATAAATGAAAAT 57.102 29.630 0.00 0.00 0.00 1.82
155 156 4.052159 TGAAAATTTCACCGTGTGCATT 57.948 36.364 4.03 0.00 34.08 3.56
159 160 4.782019 AATTTCACCGTGTGCATTGTAT 57.218 36.364 0.00 0.00 32.98 2.29
197 198 5.886960 AGAATTGATACTGGTGCTGAAAC 57.113 39.130 0.00 0.00 0.00 2.78
198 199 4.702131 AGAATTGATACTGGTGCTGAAACC 59.298 41.667 0.00 0.00 40.94 3.27
200 201 2.778299 TGATACTGGTGCTGAAACCAC 58.222 47.619 0.00 0.00 45.43 4.16
270 272 2.167662 GGAACCATTTGTCCGACCATT 58.832 47.619 0.00 0.00 0.00 3.16
273 275 1.203001 ACCATTTGTCCGACCATTGGT 60.203 47.619 8.42 8.42 39.44 3.67
311 313 3.945434 CGTGCATCCGAGCCATGC 61.945 66.667 0.00 0.00 45.92 4.06
312 314 3.589881 GTGCATCCGAGCCATGCC 61.590 66.667 0.00 0.00 45.25 4.40
330 332 6.237808 GCCATGCCGTGACTTTTATTTATTTG 60.238 38.462 0.00 0.00 0.00 2.32
364 367 7.012327 TGACAATCTTGTAAACTTTGTCCTCTG 59.988 37.037 10.54 0.00 43.37 3.35
405 409 7.981102 ACTTATTTTCAAGTCTAACCTCCAC 57.019 36.000 0.00 0.00 33.41 4.02
408 412 4.781775 TTTCAAGTCTAACCTCCACCAA 57.218 40.909 0.00 0.00 0.00 3.67
414 418 5.061721 AGTCTAACCTCCACCAAAAATGT 57.938 39.130 0.00 0.00 0.00 2.71
422 426 2.101582 TCCACCAAAAATGTCAAACCGG 59.898 45.455 0.00 0.00 0.00 5.28
435 439 4.691860 TCAAACCGGTTGACGTTTTTAA 57.308 36.364 23.08 0.00 41.47 1.52
447 451 4.507021 TGACGTTTTTAATACACGCTGTGA 59.493 37.500 14.18 0.99 37.44 3.58
460 464 2.159572 ACGCTGTGACGCCAAATTATTC 60.160 45.455 0.00 0.00 36.19 1.75
472 476 4.034279 GCCAAATTATTCGGCGTAACTACA 59.966 41.667 6.85 0.00 35.79 2.74
483 487 7.824704 TCGGCGTAACTACATGTATTAAAAA 57.175 32.000 5.91 0.00 0.00 1.94
486 490 7.633281 CGGCGTAACTACATGTATTAAAAAGTG 59.367 37.037 5.91 0.00 0.00 3.16
499 503 8.865001 TGTATTAAAAAGTGAAACAGTTGTTGC 58.135 29.630 0.00 0.00 41.43 4.17
500 504 7.897575 ATTAAAAAGTGAAACAGTTGTTGCA 57.102 28.000 1.48 1.48 41.09 4.08
501 505 7.715265 TTAAAAAGTGAAACAGTTGTTGCAA 57.285 28.000 7.23 0.00 44.57 4.08
502 506 6.799926 AAAAAGTGAAACAGTTGTTGCAAT 57.200 29.167 7.23 3.74 44.57 3.56
505 511 7.897575 AAAGTGAAACAGTTGTTGCAATAAA 57.102 28.000 10.43 1.76 44.57 1.40
535 541 4.013050 ACAATTTGGTGTTTTTGTTGGGG 58.987 39.130 0.78 0.00 0.00 4.96
542 548 4.717280 TGGTGTTTTTGTTGGGGTTAGATT 59.283 37.500 0.00 0.00 0.00 2.40
547 553 7.011016 GTGTTTTTGTTGGGGTTAGATTTCAAG 59.989 37.037 0.00 0.00 0.00 3.02
549 555 6.399639 TTTGTTGGGGTTAGATTTCAAGAC 57.600 37.500 0.00 0.00 0.00 3.01
585 591 4.430908 CAGAAGGGTCATTTAGTACGGAC 58.569 47.826 0.00 0.00 0.00 4.79
636 658 0.462789 GGTGTACCTGTCCCCATACG 59.537 60.000 0.00 0.00 0.00 3.06
642 664 1.227943 CTGTCCCCATACGGCCATG 60.228 63.158 2.24 0.00 0.00 3.66
711 737 2.659610 GCTCCTCACCAACTCGCT 59.340 61.111 0.00 0.00 0.00 4.93
715 741 2.811317 CTCACCAACTCGCTCGCC 60.811 66.667 0.00 0.00 0.00 5.54
716 742 3.573772 CTCACCAACTCGCTCGCCA 62.574 63.158 0.00 0.00 0.00 5.69
717 743 3.114616 CACCAACTCGCTCGCCAG 61.115 66.667 0.00 0.00 0.00 4.85
726 752 2.813042 GCTCGCCAGCAGTCTCAC 60.813 66.667 0.00 0.00 46.06 3.51
727 753 2.505777 CTCGCCAGCAGTCTCACG 60.506 66.667 0.00 0.00 0.00 4.35
728 754 4.724602 TCGCCAGCAGTCTCACGC 62.725 66.667 0.00 0.00 0.00 5.34
747 782 2.123640 CCCGTCTCCTCTCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
767 802 4.247380 CCGAGATGCAGGGGAGGC 62.247 72.222 0.00 0.00 0.00 4.70
768 803 3.160047 CGAGATGCAGGGGAGGCT 61.160 66.667 0.00 0.00 0.00 4.58
769 804 2.509916 GAGATGCAGGGGAGGCTG 59.490 66.667 0.00 0.00 0.00 4.85
770 805 3.771110 GAGATGCAGGGGAGGCTGC 62.771 68.421 0.00 0.00 45.89 5.25
771 806 4.891037 GATGCAGGGGAGGCTGCC 62.891 72.222 17.94 17.94 45.17 4.85
775 810 4.421515 CAGGGGAGGCTGCCACAG 62.422 72.222 27.12 11.59 32.19 3.66
902 937 2.518349 CACCACACCACACACCCC 60.518 66.667 0.00 0.00 0.00 4.95
938 982 0.320247 CGCAAAGAGTGAGCTGAGGT 60.320 55.000 0.00 0.00 0.00 3.85
940 984 1.943507 GCAAAGAGTGAGCTGAGGTCC 60.944 57.143 9.40 0.73 0.00 4.46
946 991 1.842920 TGAGCTGAGGTCCAAGCCA 60.843 57.895 9.40 7.87 0.00 4.75
1485 1604 2.515523 GCCCGCATGCTCATCACT 60.516 61.111 17.13 0.00 0.00 3.41
1557 1679 3.052082 GTCGTGTCCCTCGACGGA 61.052 66.667 0.00 0.00 45.64 4.69
2236 2572 2.726351 CGGAGCCAAGGAGAGGGAC 61.726 68.421 0.00 0.00 0.00 4.46
2344 2721 1.969589 GGCGGACCCGAACAACAAT 60.970 57.895 13.24 0.00 42.83 2.71
2520 2954 4.150454 CTCCCTCCCTCCCTCGCT 62.150 72.222 0.00 0.00 0.00 4.93
2521 2955 4.144727 TCCCTCCCTCCCTCGCTC 62.145 72.222 0.00 0.00 0.00 5.03
2525 2959 3.776347 CTCCCTCCCTCGCTCGCTA 62.776 68.421 0.00 0.00 0.00 4.26
2526 2960 2.833582 CCCTCCCTCGCTCGCTAA 60.834 66.667 0.00 0.00 0.00 3.09
2561 2995 3.487544 GCAAAGGAGTGATCGGCATTAAC 60.488 47.826 0.00 0.00 0.00 2.01
2592 3026 3.036084 CGCTTGTCTCGTTGCCGT 61.036 61.111 0.00 0.00 35.01 5.68
2760 3219 2.354303 CGTCCTATGCAACAGTGGGTTA 60.354 50.000 0.00 0.00 37.72 2.85
2789 3248 1.226717 GCTGACTCGATCCGGTGTC 60.227 63.158 0.00 0.00 33.94 3.67
3059 3526 0.106419 TGCCCGTGTCCCTTCTTTTT 60.106 50.000 0.00 0.00 0.00 1.94
3295 3861 2.664185 CAGGATGCGATGCTCCCG 60.664 66.667 0.00 0.00 31.49 5.14
3296 3862 2.839632 AGGATGCGATGCTCCCGA 60.840 61.111 0.00 0.00 31.49 5.14
3297 3863 2.108976 GGATGCGATGCTCCCGAA 59.891 61.111 0.00 0.00 0.00 4.30
3298 3864 1.302033 GGATGCGATGCTCCCGAAT 60.302 57.895 0.00 0.00 0.00 3.34
3425 4043 0.526954 TAAAGATCCGTCGCTTCGCC 60.527 55.000 0.00 0.00 0.00 5.54
3455 4073 3.535962 GGAGCGGCAGAGGAGGAG 61.536 72.222 1.45 0.00 0.00 3.69
3456 4074 3.535962 GAGCGGCAGAGGAGGAGG 61.536 72.222 1.45 0.00 0.00 4.30
3457 4075 4.067512 AGCGGCAGAGGAGGAGGA 62.068 66.667 1.45 0.00 0.00 3.71
3500 4121 2.540383 GGGGGCTCTTCATTTTTCCTT 58.460 47.619 0.00 0.00 0.00 3.36
3581 4206 1.676057 GAGAGTCAGTCGACAACACG 58.324 55.000 19.50 0.42 45.23 4.49
3622 4247 4.199310 AGCAAGTGCAAGTACAAAGAAGA 58.801 39.130 6.00 0.00 45.16 2.87
3627 4252 5.376625 AGTGCAAGTACAAAGAAGATTGGA 58.623 37.500 0.00 0.00 34.56 3.53
3757 4383 6.341316 TCTGATAGTAACTGACCTTGATTGC 58.659 40.000 0.00 0.00 0.00 3.56
3773 4404 6.585702 CCTTGATTGCGTTGTTCATTGATTTA 59.414 34.615 0.00 0.00 0.00 1.40
3779 4410 4.624882 GCGTTGTTCATTGATTTAATGGCA 59.375 37.500 0.00 0.00 45.05 4.92
3782 4413 7.623925 GCGTTGTTCATTGATTTAATGGCATTT 60.624 33.333 19.21 0.00 45.05 2.32
3788 4419 7.838884 TCATTGATTTAATGGCATTTCTGACA 58.161 30.769 19.21 9.82 46.86 3.58
3796 4427 3.548770 TGGCATTTCTGACATGAGATCC 58.451 45.455 7.94 0.52 34.67 3.36
3814 4449 0.677731 CCAAGATGCTCCGGCTTCAA 60.678 55.000 0.00 0.00 42.70 2.69
3822 4457 1.712977 CTCCGGCTTCAATGCTCTGC 61.713 60.000 0.00 0.00 0.00 4.26
3853 4489 2.932614 GGAATTCATCTCACTGTCGTGG 59.067 50.000 7.93 0.00 41.53 4.94
3854 4490 3.368427 GGAATTCATCTCACTGTCGTGGA 60.368 47.826 7.93 0.00 41.53 4.02
4009 4718 4.516321 CGGCCATTCAAATCTGATATGACA 59.484 41.667 2.24 0.00 0.00 3.58
4170 5874 5.188327 CTCTAACAGAGTCGCCATAATCA 57.812 43.478 0.00 0.00 37.57 2.57
4198 5902 1.269831 GGCAACAATAAACGCAACCCA 60.270 47.619 0.00 0.00 0.00 4.51
4209 5913 0.529833 CGCAACCCACATATTTGGCA 59.470 50.000 2.05 0.00 35.00 4.92
4219 5923 5.113383 CCACATATTTGGCACGTACTCTTA 58.887 41.667 0.00 0.00 0.00 2.10
4220 5924 5.758296 CCACATATTTGGCACGTACTCTTAT 59.242 40.000 0.00 0.00 0.00 1.73
4221 5925 6.073765 CCACATATTTGGCACGTACTCTTATC 60.074 42.308 0.00 0.00 0.00 1.75
4222 5926 5.989777 ACATATTTGGCACGTACTCTTATCC 59.010 40.000 0.00 0.00 0.00 2.59
4223 5927 2.973694 TTGGCACGTACTCTTATCCC 57.026 50.000 0.00 0.00 0.00 3.85
4224 5928 2.154567 TGGCACGTACTCTTATCCCT 57.845 50.000 0.00 0.00 0.00 4.20
4225 5929 2.029623 TGGCACGTACTCTTATCCCTC 58.970 52.381 0.00 0.00 0.00 4.30
4226 5930 1.340568 GGCACGTACTCTTATCCCTCC 59.659 57.143 0.00 0.00 0.00 4.30
4227 5931 1.340568 GCACGTACTCTTATCCCTCCC 59.659 57.143 0.00 0.00 0.00 4.30
4228 5932 2.946785 CACGTACTCTTATCCCTCCCT 58.053 52.381 0.00 0.00 0.00 4.20
4229 5933 2.885894 CACGTACTCTTATCCCTCCCTC 59.114 54.545 0.00 0.00 0.00 4.30
4230 5934 2.158490 ACGTACTCTTATCCCTCCCTCC 60.158 54.545 0.00 0.00 0.00 4.30
4231 5935 2.818593 CGTACTCTTATCCCTCCCTCCC 60.819 59.091 0.00 0.00 0.00 4.30
4232 5936 0.568697 ACTCTTATCCCTCCCTCCCC 59.431 60.000 0.00 0.00 0.00 4.81
4233 5937 0.178888 CTCTTATCCCTCCCTCCCCC 60.179 65.000 0.00 0.00 0.00 5.40
4234 5938 0.939443 TCTTATCCCTCCCTCCCCCA 60.939 60.000 0.00 0.00 0.00 4.96
4235 5939 0.768609 CTTATCCCTCCCTCCCCCAC 60.769 65.000 0.00 0.00 0.00 4.61
4236 5940 2.279954 TTATCCCTCCCTCCCCCACC 62.280 65.000 0.00 0.00 0.00 4.61
4266 5970 3.441492 AAAACGGTTTTTGTGCAAACG 57.559 38.095 12.86 0.00 37.50 3.60
4267 5971 1.351153 AACGGTTTTTGTGCAAACGG 58.649 45.000 0.00 1.83 40.82 4.44
4268 5972 1.079317 ACGGTTTTTGTGCAAACGGC 61.079 50.000 6.50 0.00 39.42 5.68
4277 5981 2.261361 GCAAACGGCATTCCCACC 59.739 61.111 0.00 0.00 43.97 4.61
4278 5982 2.969827 CAAACGGCATTCCCACCC 59.030 61.111 0.00 0.00 0.00 4.61
4279 5983 1.606313 CAAACGGCATTCCCACCCT 60.606 57.895 0.00 0.00 0.00 4.34
4280 5984 1.304134 AAACGGCATTCCCACCCTC 60.304 57.895 0.00 0.00 0.00 4.30
4281 5985 2.781431 AAACGGCATTCCCACCCTCC 62.781 60.000 0.00 0.00 0.00 4.30
4282 5986 4.506255 CGGCATTCCCACCCTCCC 62.506 72.222 0.00 0.00 0.00 4.30
4283 5987 3.023735 GGCATTCCCACCCTCCCT 61.024 66.667 0.00 0.00 0.00 4.20
4284 5988 2.597903 GCATTCCCACCCTCCCTC 59.402 66.667 0.00 0.00 0.00 4.30
4285 5989 2.003548 GCATTCCCACCCTCCCTCT 61.004 63.158 0.00 0.00 0.00 3.69
4286 5990 1.918253 CATTCCCACCCTCCCTCTG 59.082 63.158 0.00 0.00 0.00 3.35
4287 5991 1.308216 ATTCCCACCCTCCCTCTGG 60.308 63.158 0.00 0.00 0.00 3.86
4288 5992 2.138236 ATTCCCACCCTCCCTCTGGT 62.138 60.000 0.00 0.00 34.40 4.00
4289 5993 2.689034 CCCACCCTCCCTCTGGTC 60.689 72.222 0.00 0.00 30.70 4.02
4290 5994 2.452114 CCACCCTCCCTCTGGTCT 59.548 66.667 0.00 0.00 30.70 3.85
4291 5995 1.229658 CCACCCTCCCTCTGGTCTT 60.230 63.158 0.00 0.00 30.70 3.01
4292 5996 1.268283 CCACCCTCCCTCTGGTCTTC 61.268 65.000 0.00 0.00 30.70 2.87
4293 5997 0.252467 CACCCTCCCTCTGGTCTTCT 60.252 60.000 0.00 0.00 30.70 2.85
4294 5998 0.041982 ACCCTCCCTCTGGTCTTCTC 59.958 60.000 0.00 0.00 0.00 2.87
4295 5999 1.040339 CCCTCCCTCTGGTCTTCTCG 61.040 65.000 0.00 0.00 0.00 4.04
4296 6000 1.671901 CCTCCCTCTGGTCTTCTCGC 61.672 65.000 0.00 0.00 0.00 5.03
4297 6001 1.671901 CTCCCTCTGGTCTTCTCGCC 61.672 65.000 0.00 0.00 0.00 5.54
4298 6002 2.726351 CCCTCTGGTCTTCTCGCCC 61.726 68.421 0.00 0.00 0.00 6.13
4299 6003 2.492090 CTCTGGTCTTCTCGCCCG 59.508 66.667 0.00 0.00 0.00 6.13
4300 6004 3.708220 CTCTGGTCTTCTCGCCCGC 62.708 68.421 0.00 0.00 0.00 6.13
4301 6005 4.069232 CTGGTCTTCTCGCCCGCA 62.069 66.667 0.00 0.00 0.00 5.69
4302 6006 3.376935 CTGGTCTTCTCGCCCGCAT 62.377 63.158 0.00 0.00 0.00 4.73
4303 6007 2.586357 GGTCTTCTCGCCCGCATC 60.586 66.667 0.00 0.00 0.00 3.91
4304 6008 2.184322 GTCTTCTCGCCCGCATCA 59.816 61.111 0.00 0.00 0.00 3.07
4305 6009 2.167861 GTCTTCTCGCCCGCATCAC 61.168 63.158 0.00 0.00 0.00 3.06
4306 6010 2.185350 CTTCTCGCCCGCATCACT 59.815 61.111 0.00 0.00 0.00 3.41
4307 6011 2.125552 TTCTCGCCCGCATCACTG 60.126 61.111 0.00 0.00 0.00 3.66
4308 6012 4.819761 TCTCGCCCGCATCACTGC 62.820 66.667 0.00 0.00 45.31 4.40
4313 6017 4.864334 CCCGCATCACTGCCTCCC 62.864 72.222 0.00 0.00 46.07 4.30
4314 6018 4.864334 CCGCATCACTGCCTCCCC 62.864 72.222 0.00 0.00 46.07 4.81
4315 6019 3.790437 CGCATCACTGCCTCCCCT 61.790 66.667 0.00 0.00 46.07 4.79
4316 6020 2.191641 GCATCACTGCCTCCCCTC 59.808 66.667 0.00 0.00 42.88 4.30
4317 6021 2.914289 CATCACTGCCTCCCCTCC 59.086 66.667 0.00 0.00 0.00 4.30
4318 6022 2.367512 ATCACTGCCTCCCCTCCC 60.368 66.667 0.00 0.00 0.00 4.30
4319 6023 2.965927 ATCACTGCCTCCCCTCCCT 61.966 63.158 0.00 0.00 0.00 4.20
4320 6024 2.905676 ATCACTGCCTCCCCTCCCTC 62.906 65.000 0.00 0.00 0.00 4.30
4321 6025 4.787280 ACTGCCTCCCCTCCCTCG 62.787 72.222 0.00 0.00 0.00 4.63
4326 6030 4.517934 CTCCCCTCCCTCGCCGTA 62.518 72.222 0.00 0.00 0.00 4.02
4327 6031 4.828296 TCCCCTCCCTCGCCGTAC 62.828 72.222 0.00 0.00 0.00 3.67
4328 6032 4.835891 CCCCTCCCTCGCCGTACT 62.836 72.222 0.00 0.00 0.00 2.73
4329 6033 2.194056 CCCTCCCTCGCCGTACTA 59.806 66.667 0.00 0.00 0.00 1.82
4330 6034 1.228490 CCCTCCCTCGCCGTACTAT 60.228 63.158 0.00 0.00 0.00 2.12
4331 6035 1.242665 CCCTCCCTCGCCGTACTATC 61.243 65.000 0.00 0.00 0.00 2.08
4332 6036 0.536687 CCTCCCTCGCCGTACTATCA 60.537 60.000 0.00 0.00 0.00 2.15
4333 6037 0.592148 CTCCCTCGCCGTACTATCAC 59.408 60.000 0.00 0.00 0.00 3.06
4334 6038 0.107066 TCCCTCGCCGTACTATCACA 60.107 55.000 0.00 0.00 0.00 3.58
4335 6039 0.959553 CCCTCGCCGTACTATCACAT 59.040 55.000 0.00 0.00 0.00 3.21
4336 6040 2.156917 CCCTCGCCGTACTATCACATA 58.843 52.381 0.00 0.00 0.00 2.29
4337 6041 2.753452 CCCTCGCCGTACTATCACATAT 59.247 50.000 0.00 0.00 0.00 1.78
4338 6042 3.427638 CCCTCGCCGTACTATCACATATG 60.428 52.174 0.00 0.00 0.00 1.78
4339 6043 3.439129 CCTCGCCGTACTATCACATATGA 59.561 47.826 10.38 0.00 39.83 2.15
4340 6044 4.404324 CTCGCCGTACTATCACATATGAC 58.596 47.826 10.38 0.00 37.79 3.06
4341 6045 3.189910 TCGCCGTACTATCACATATGACC 59.810 47.826 10.38 0.00 37.79 4.02
4342 6046 3.499048 GCCGTACTATCACATATGACCG 58.501 50.000 10.38 0.00 37.79 4.79
4343 6047 3.499048 CCGTACTATCACATATGACCGC 58.501 50.000 10.38 0.00 37.79 5.68
4344 6048 3.190744 CCGTACTATCACATATGACCGCT 59.809 47.826 10.38 0.00 37.79 5.52
4345 6049 4.321008 CCGTACTATCACATATGACCGCTT 60.321 45.833 10.38 0.00 37.79 4.68
4346 6050 5.220381 CGTACTATCACATATGACCGCTTT 58.780 41.667 10.38 0.00 37.79 3.51
4347 6051 5.342525 CGTACTATCACATATGACCGCTTTC 59.657 44.000 10.38 0.00 37.79 2.62
4348 6052 4.299155 ACTATCACATATGACCGCTTTCG 58.701 43.478 10.38 0.00 37.79 3.46
4360 6064 4.016706 CTTTCGGCCGTCCCCAGT 62.017 66.667 27.15 0.00 0.00 4.00
4361 6065 3.952628 CTTTCGGCCGTCCCCAGTC 62.953 68.421 27.15 0.00 0.00 3.51
4368 6072 4.308458 CGTCCCCAGTCCGCAACA 62.308 66.667 0.00 0.00 0.00 3.33
4369 6073 2.112297 GTCCCCAGTCCGCAACAA 59.888 61.111 0.00 0.00 0.00 2.83
4370 6074 2.112297 TCCCCAGTCCGCAACAAC 59.888 61.111 0.00 0.00 0.00 3.32
4371 6075 3.353836 CCCCAGTCCGCAACAACG 61.354 66.667 0.00 0.00 0.00 4.10
4372 6076 2.280524 CCCAGTCCGCAACAACGA 60.281 61.111 0.00 0.00 34.06 3.85
4373 6077 1.671054 CCCAGTCCGCAACAACGAT 60.671 57.895 0.00 0.00 34.06 3.73
4374 6078 1.497278 CCAGTCCGCAACAACGATG 59.503 57.895 0.00 0.00 34.06 3.84
4375 6079 1.227999 CCAGTCCGCAACAACGATGT 61.228 55.000 0.00 0.00 43.14 3.06
4376 6080 0.163788 CAGTCCGCAACAACGATGTC 59.836 55.000 0.00 0.00 39.40 3.06
4377 6081 0.249699 AGTCCGCAACAACGATGTCA 60.250 50.000 0.00 0.00 39.40 3.58
4378 6082 0.796312 GTCCGCAACAACGATGTCAT 59.204 50.000 0.00 0.00 39.40 3.06
4379 6083 0.795698 TCCGCAACAACGATGTCATG 59.204 50.000 0.00 0.00 39.40 3.07
4380 6084 0.516877 CCGCAACAACGATGTCATGT 59.483 50.000 0.00 0.00 39.40 3.21
4381 6085 1.729517 CCGCAACAACGATGTCATGTA 59.270 47.619 0.00 0.00 39.40 2.29
4382 6086 2.473868 CCGCAACAACGATGTCATGTAC 60.474 50.000 0.00 0.00 39.40 2.90
4383 6087 2.757896 GCAACAACGATGTCATGTACG 58.242 47.619 0.00 0.00 39.40 3.67
4384 6088 2.156891 GCAACAACGATGTCATGTACGT 59.843 45.455 0.00 0.00 39.40 3.57
4388 6092 1.355971 ACGATGTCATGTACGTTGCC 58.644 50.000 0.00 0.00 35.47 4.52
4389 6093 1.067142 ACGATGTCATGTACGTTGCCT 60.067 47.619 0.00 0.00 35.47 4.75
4390 6094 1.588404 CGATGTCATGTACGTTGCCTC 59.412 52.381 0.00 0.00 0.00 4.70
4391 6095 1.588404 GATGTCATGTACGTTGCCTCG 59.412 52.381 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.255890 CAATCCTACCTGGGGTGGTG 59.744 60.000 0.00 0.00 41.05 4.17
2 3 0.120377 TCAATCCTACCTGGGGTGGT 59.880 55.000 0.00 0.00 43.66 4.16
4 5 3.669939 AAATCAATCCTACCTGGGGTG 57.330 47.619 0.00 0.00 36.19 4.61
5 6 5.806955 TTTAAATCAATCCTACCTGGGGT 57.193 39.130 0.00 0.00 40.16 4.95
6 7 5.069119 GCTTTTAAATCAATCCTACCTGGGG 59.931 44.000 0.00 0.00 36.20 4.96
7 8 5.656416 TGCTTTTAAATCAATCCTACCTGGG 59.344 40.000 0.00 0.00 36.20 4.45
8 9 6.773976 TGCTTTTAAATCAATCCTACCTGG 57.226 37.500 0.00 0.00 37.10 4.45
9 10 7.428826 GGATGCTTTTAAATCAATCCTACCTG 58.571 38.462 12.82 0.00 0.00 4.00
10 11 6.551227 GGGATGCTTTTAAATCAATCCTACCT 59.449 38.462 16.83 0.00 0.00 3.08
11 12 6.515035 CGGGATGCTTTTAAATCAATCCTACC 60.515 42.308 16.83 0.00 0.00 3.18
12 13 6.438763 CGGGATGCTTTTAAATCAATCCTAC 58.561 40.000 16.83 6.62 0.00 3.18
13 14 5.534654 CCGGGATGCTTTTAAATCAATCCTA 59.465 40.000 16.83 0.00 0.00 2.94
14 15 4.342092 CCGGGATGCTTTTAAATCAATCCT 59.658 41.667 16.83 0.00 0.00 3.24
15 16 4.099419 ACCGGGATGCTTTTAAATCAATCC 59.901 41.667 6.32 12.11 0.00 3.01
16 17 5.262588 ACCGGGATGCTTTTAAATCAATC 57.737 39.130 6.32 0.00 0.00 2.67
17 18 5.675684 AACCGGGATGCTTTTAAATCAAT 57.324 34.783 6.32 0.00 0.00 2.57
18 19 5.011125 TGAAACCGGGATGCTTTTAAATCAA 59.989 36.000 6.32 0.00 0.00 2.57
19 20 4.524714 TGAAACCGGGATGCTTTTAAATCA 59.475 37.500 6.32 0.00 0.00 2.57
20 21 5.066968 TGAAACCGGGATGCTTTTAAATC 57.933 39.130 6.32 0.00 0.00 2.17
21 22 5.675684 ATGAAACCGGGATGCTTTTAAAT 57.324 34.783 6.32 0.00 0.00 1.40
22 23 6.783708 ATATGAAACCGGGATGCTTTTAAA 57.216 33.333 6.32 0.00 0.00 1.52
23 24 6.605594 AGAATATGAAACCGGGATGCTTTTAA 59.394 34.615 6.32 0.00 0.00 1.52
24 25 6.126409 AGAATATGAAACCGGGATGCTTTTA 58.874 36.000 6.32 0.00 0.00 1.52
25 26 4.956075 AGAATATGAAACCGGGATGCTTTT 59.044 37.500 6.32 0.00 0.00 2.27
26 27 4.536765 AGAATATGAAACCGGGATGCTTT 58.463 39.130 6.32 0.00 0.00 3.51
27 28 4.170468 AGAATATGAAACCGGGATGCTT 57.830 40.909 6.32 0.00 0.00 3.91
28 29 3.864789 AGAATATGAAACCGGGATGCT 57.135 42.857 6.32 0.00 0.00 3.79
29 30 4.918810 AAAGAATATGAAACCGGGATGC 57.081 40.909 6.32 0.00 0.00 3.91
54 55 2.215196 CGAAACCGACCCTCAGAAAAA 58.785 47.619 0.00 0.00 0.00 1.94
55 56 1.139455 ACGAAACCGACCCTCAGAAAA 59.861 47.619 0.00 0.00 0.00 2.29
56 57 0.754472 ACGAAACCGACCCTCAGAAA 59.246 50.000 0.00 0.00 0.00 2.52
57 58 1.619654 TACGAAACCGACCCTCAGAA 58.380 50.000 0.00 0.00 0.00 3.02
58 59 1.843368 ATACGAAACCGACCCTCAGA 58.157 50.000 0.00 0.00 0.00 3.27
59 60 2.537401 GAATACGAAACCGACCCTCAG 58.463 52.381 0.00 0.00 0.00 3.35
60 61 1.135315 CGAATACGAAACCGACCCTCA 60.135 52.381 0.00 0.00 42.66 3.86
61 62 1.133025 TCGAATACGAAACCGACCCTC 59.867 52.381 0.00 0.00 45.74 4.30
62 63 1.176527 TCGAATACGAAACCGACCCT 58.823 50.000 0.00 0.00 45.74 4.34
63 64 3.719699 TCGAATACGAAACCGACCC 57.280 52.632 0.00 0.00 45.74 4.46
72 73 4.039703 GTCGATCCACAATTCGAATACGA 58.960 43.478 11.83 10.75 45.03 3.43
73 74 3.121795 CGTCGATCCACAATTCGAATACG 60.122 47.826 11.83 10.22 45.03 3.06
74 75 3.181774 CCGTCGATCCACAATTCGAATAC 59.818 47.826 11.83 1.49 45.03 1.89
75 76 3.377439 CCGTCGATCCACAATTCGAATA 58.623 45.455 11.83 0.00 45.03 1.75
76 77 2.201732 CCGTCGATCCACAATTCGAAT 58.798 47.619 4.39 4.39 45.03 3.34
77 78 1.635844 CCGTCGATCCACAATTCGAA 58.364 50.000 0.00 0.00 45.03 3.71
78 79 0.804544 GCCGTCGATCCACAATTCGA 60.805 55.000 0.00 0.00 41.70 3.71
79 80 1.081556 TGCCGTCGATCCACAATTCG 61.082 55.000 0.00 0.00 36.72 3.34
80 81 0.373716 GTGCCGTCGATCCACAATTC 59.626 55.000 0.00 0.00 0.00 2.17
81 82 1.358725 CGTGCCGTCGATCCACAATT 61.359 55.000 11.74 0.00 0.00 2.32
82 83 1.809619 CGTGCCGTCGATCCACAAT 60.810 57.895 11.74 0.00 0.00 2.71
83 84 2.431771 CGTGCCGTCGATCCACAA 60.432 61.111 11.74 0.00 0.00 3.33
84 85 3.676605 ACGTGCCGTCGATCCACA 61.677 61.111 11.74 0.00 33.69 4.17
85 86 3.179265 CACGTGCCGTCGATCCAC 61.179 66.667 0.82 0.00 38.32 4.02
86 87 2.702751 AAACACGTGCCGTCGATCCA 62.703 55.000 17.22 0.00 38.32 3.41
87 88 1.952266 GAAACACGTGCCGTCGATCC 61.952 60.000 17.22 0.00 38.32 3.36
88 89 1.007336 AGAAACACGTGCCGTCGATC 61.007 55.000 17.22 3.73 38.32 3.69
89 90 0.599204 AAGAAACACGTGCCGTCGAT 60.599 50.000 17.22 2.70 38.32 3.59
90 91 1.210545 GAAGAAACACGTGCCGTCGA 61.211 55.000 17.22 0.00 38.32 4.20
91 92 1.200839 GAAGAAACACGTGCCGTCG 59.799 57.895 17.22 0.00 38.32 5.12
92 93 0.865769 ATGAAGAAACACGTGCCGTC 59.134 50.000 17.22 12.97 38.32 4.79
93 94 1.002900 CAATGAAGAAACACGTGCCGT 60.003 47.619 17.22 3.25 42.36 5.68
94 95 1.673760 CAATGAAGAAACACGTGCCG 58.326 50.000 17.22 0.00 0.00 5.69
95 96 1.268999 TGCAATGAAGAAACACGTGCC 60.269 47.619 17.22 5.21 34.99 5.01
96 97 1.780860 GTGCAATGAAGAAACACGTGC 59.219 47.619 17.22 0.00 35.83 5.34
97 98 3.338818 AGTGCAATGAAGAAACACGTG 57.661 42.857 15.48 15.48 36.38 4.49
98 99 6.775088 CATATAGTGCAATGAAGAAACACGT 58.225 36.000 0.00 0.00 36.38 4.49
114 115 9.897744 ATTTTCATTTATCGGTTGCATATAGTG 57.102 29.630 0.00 0.00 0.00 2.74
118 119 9.814899 TGAAATTTTCATTTATCGGTTGCATAT 57.185 25.926 7.74 0.00 32.35 1.78
119 120 9.081997 GTGAAATTTTCATTTATCGGTTGCATA 57.918 29.630 14.54 0.00 42.47 3.14
120 121 7.064490 GGTGAAATTTTCATTTATCGGTTGCAT 59.936 33.333 14.54 0.00 42.47 3.96
121 122 6.367422 GGTGAAATTTTCATTTATCGGTTGCA 59.633 34.615 14.54 0.00 42.47 4.08
122 123 6.453659 CGGTGAAATTTTCATTTATCGGTTGC 60.454 38.462 14.54 0.00 42.47 4.17
123 124 6.584563 ACGGTGAAATTTTCATTTATCGGTTG 59.415 34.615 14.54 0.29 42.47 3.77
124 125 6.584563 CACGGTGAAATTTTCATTTATCGGTT 59.415 34.615 14.54 0.00 42.47 4.44
125 126 6.090129 CACGGTGAAATTTTCATTTATCGGT 58.910 36.000 14.54 8.94 42.47 4.69
126 127 6.033407 CACACGGTGAAATTTTCATTTATCGG 59.967 38.462 16.29 8.40 42.47 4.18
127 128 6.452350 GCACACGGTGAAATTTTCATTTATCG 60.452 38.462 16.29 14.30 42.47 2.92
128 129 6.364706 TGCACACGGTGAAATTTTCATTTATC 59.635 34.615 16.29 2.18 42.47 1.75
129 130 6.219473 TGCACACGGTGAAATTTTCATTTAT 58.781 32.000 16.29 0.00 42.47 1.40
130 131 5.592054 TGCACACGGTGAAATTTTCATTTA 58.408 33.333 16.29 0.00 42.47 1.40
131 132 4.437239 TGCACACGGTGAAATTTTCATTT 58.563 34.783 16.29 0.55 42.47 2.32
132 133 4.052159 TGCACACGGTGAAATTTTCATT 57.948 36.364 16.29 0.88 42.47 2.57
133 134 3.724508 TGCACACGGTGAAATTTTCAT 57.275 38.095 16.29 0.00 42.47 2.57
134 135 3.724508 ATGCACACGGTGAAATTTTCA 57.275 38.095 16.29 7.74 35.23 2.69
135 136 3.801594 ACAATGCACACGGTGAAATTTTC 59.198 39.130 16.29 2.05 35.23 2.29
136 137 3.791245 ACAATGCACACGGTGAAATTTT 58.209 36.364 16.29 2.16 35.23 1.82
137 138 3.451141 ACAATGCACACGGTGAAATTT 57.549 38.095 16.29 0.00 35.23 1.82
138 139 4.484236 CATACAATGCACACGGTGAAATT 58.516 39.130 16.29 8.29 35.23 1.82
139 140 3.119531 CCATACAATGCACACGGTGAAAT 60.120 43.478 16.29 2.28 35.23 2.17
140 141 2.227626 CCATACAATGCACACGGTGAAA 59.772 45.455 16.29 0.00 35.23 2.69
141 142 1.809547 CCATACAATGCACACGGTGAA 59.190 47.619 16.29 0.10 35.23 3.18
142 143 1.002544 TCCATACAATGCACACGGTGA 59.997 47.619 16.29 0.00 35.23 4.02
143 144 1.447945 TCCATACAATGCACACGGTG 58.552 50.000 6.58 6.58 36.51 4.94
155 156 9.104965 CAATTCTAGGACGTTTTTATCCATACA 57.895 33.333 0.00 0.00 0.00 2.29
159 160 9.321562 GTATCAATTCTAGGACGTTTTTATCCA 57.678 33.333 0.00 0.00 0.00 3.41
239 241 2.558359 CAAATGGTTCCTGGTTCTGGTC 59.442 50.000 0.00 0.00 0.00 4.02
273 275 4.758251 CCTGCACCGCGACATGGA 62.758 66.667 8.23 3.00 0.00 3.41
353 356 2.307098 AGGGGTCAATCAGAGGACAAAG 59.693 50.000 7.19 0.00 35.74 2.77
356 359 1.203300 TGAGGGGTCAATCAGAGGACA 60.203 52.381 7.19 0.00 35.74 4.02
393 397 4.825085 TGACATTTTTGGTGGAGGTTAGAC 59.175 41.667 0.00 0.00 0.00 2.59
397 401 4.383661 GGTTTGACATTTTTGGTGGAGGTT 60.384 41.667 0.00 0.00 0.00 3.50
405 409 3.786635 TCAACCGGTTTGACATTTTTGG 58.213 40.909 19.55 1.38 39.45 3.28
422 426 5.112937 CACAGCGTGTATTAAAAACGTCAAC 59.887 40.000 8.95 0.00 39.45 3.18
435 439 0.601576 TTTGGCGTCACAGCGTGTAT 60.602 50.000 0.00 0.00 38.18 2.29
460 464 7.633281 CACTTTTTAATACATGTAGTTACGCCG 59.367 37.037 11.57 0.00 0.00 6.46
483 487 7.897575 TTTTTATTGCAACAACTGTTTCACT 57.102 28.000 0.00 0.00 35.83 3.41
505 511 9.755804 AACAAAAACACCAAATTGTTTGATTTT 57.244 22.222 11.32 8.95 46.68 1.82
535 541 9.788960 AAACTCAAACTTGTCTTGAAATCTAAC 57.211 29.630 0.00 0.00 32.57 2.34
542 548 5.943416 TCTGGAAACTCAAACTTGTCTTGAA 59.057 36.000 0.00 0.00 32.57 2.69
547 553 4.036852 CCCTTCTGGAAACTCAAACTTGTC 59.963 45.833 0.00 0.00 35.39 3.18
549 555 3.954258 ACCCTTCTGGAAACTCAAACTTG 59.046 43.478 0.00 0.00 38.00 3.16
674 696 1.143684 CCAATGGGGGTATGGAGAGTG 59.856 57.143 0.00 0.00 36.27 3.51
711 737 4.724602 GCGTGAGACTGCTGGCGA 62.725 66.667 0.00 0.00 0.00 5.54
728 754 3.213402 GAGGAGAGGAGACGGGCG 61.213 72.222 0.00 0.00 0.00 6.13
729 755 2.835895 GGAGGAGAGGAGACGGGC 60.836 72.222 0.00 0.00 0.00 6.13
730 756 2.123640 GGGAGGAGAGGAGACGGG 60.124 72.222 0.00 0.00 0.00 5.28
731 757 1.454847 CTGGGAGGAGAGGAGACGG 60.455 68.421 0.00 0.00 0.00 4.79
732 758 2.124693 GCTGGGAGGAGAGGAGACG 61.125 68.421 0.00 0.00 0.00 4.18
733 759 1.760480 GGCTGGGAGGAGAGGAGAC 60.760 68.421 0.00 0.00 0.00 3.36
734 760 2.693017 GGCTGGGAGGAGAGGAGA 59.307 66.667 0.00 0.00 0.00 3.71
735 761 2.837291 CGGCTGGGAGGAGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
736 762 3.347590 TCGGCTGGGAGGAGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
737 763 2.655077 ATCTCGGCTGGGAGGAGAGG 62.655 65.000 0.00 0.00 39.91 3.69
738 764 1.152567 ATCTCGGCTGGGAGGAGAG 60.153 63.158 0.00 0.00 39.91 3.20
747 782 3.457625 CTCCCCTGCATCTCGGCTG 62.458 68.421 0.00 0.00 34.04 4.85
938 982 4.441695 CTCGCGCTCTGGCTTGGA 62.442 66.667 5.56 0.00 36.09 3.53
940 984 2.884685 CTCTCGCGCTCTGGCTTG 60.885 66.667 5.56 0.00 36.09 4.01
946 991 1.806568 CTTCTTCCTCTCGCGCTCT 59.193 57.895 5.56 0.00 0.00 4.09
993 1069 2.189499 GCCCGTGATCATCTTGGCC 61.189 63.158 13.68 0.00 32.74 5.36
995 1071 1.431488 CGTGCCCGTGATCATCTTGG 61.431 60.000 0.00 0.00 0.00 3.61
1485 1604 2.741092 GTGTCGGGGAACTGCTCA 59.259 61.111 0.00 0.00 36.33 4.26
1557 1679 3.989698 CTCGATGGCGTTGCTCCGT 62.990 63.158 0.00 0.00 38.98 4.69
2064 2372 2.256461 GCGTCGTTGTAGTCCGGT 59.744 61.111 0.00 0.00 0.00 5.28
2236 2572 0.793478 CTCGCTCCACGTTGTAGTCG 60.793 60.000 0.00 0.00 44.19 4.18
2514 2948 1.810030 GGTTGGTTAGCGAGCGAGG 60.810 63.158 0.00 0.00 0.00 4.63
2517 2951 0.373716 GATTGGTTGGTTAGCGAGCG 59.626 55.000 0.00 0.00 0.00 5.03
2518 2952 0.733150 GGATTGGTTGGTTAGCGAGC 59.267 55.000 0.00 0.00 0.00 5.03
2519 2953 1.006832 CGGATTGGTTGGTTAGCGAG 58.993 55.000 0.00 0.00 0.00 5.03
2520 2954 0.391927 CCGGATTGGTTGGTTAGCGA 60.392 55.000 0.00 0.00 0.00 4.93
2521 2955 1.988834 GCCGGATTGGTTGGTTAGCG 61.989 60.000 5.05 0.00 41.21 4.26
2522 2956 0.963355 TGCCGGATTGGTTGGTTAGC 60.963 55.000 5.05 0.00 41.21 3.09
2523 2957 1.540267 TTGCCGGATTGGTTGGTTAG 58.460 50.000 5.05 0.00 41.21 2.34
2524 2958 1.889829 CTTTGCCGGATTGGTTGGTTA 59.110 47.619 5.05 0.00 41.21 2.85
2525 2959 0.678950 CTTTGCCGGATTGGTTGGTT 59.321 50.000 5.05 0.00 41.21 3.67
2526 2960 1.184970 CCTTTGCCGGATTGGTTGGT 61.185 55.000 5.05 0.00 41.21 3.67
2561 2995 2.094659 AAGCGCGTCAGAATCGTGG 61.095 57.895 8.43 0.00 38.88 4.94
2592 3026 1.301716 GAAGTTCCACCTGCAGCGA 60.302 57.895 8.66 0.00 0.00 4.93
2702 3140 1.645034 CATGGAGTACAACGAGCCAG 58.355 55.000 0.00 0.00 31.23 4.85
2760 3219 1.964223 TCGAGTCAGCAAGAAGAACCT 59.036 47.619 0.00 0.00 0.00 3.50
2789 3248 0.524862 GCCATGAACAGACCTGCAAG 59.475 55.000 0.00 0.00 0.00 4.01
2890 3357 4.162690 AAGGAGGCGGCGGTCATC 62.163 66.667 9.78 0.00 0.00 2.92
3111 3578 2.743179 GGTTAGAGGAAGGGGGCCG 61.743 68.421 0.00 0.00 0.00 6.13
3284 3850 1.643832 GTGAATTCGGGAGCATCGC 59.356 57.895 0.04 0.00 45.73 4.58
3285 3851 0.461870 TGGTGAATTCGGGAGCATCG 60.462 55.000 0.04 0.00 34.37 3.84
3286 3852 1.972872 ATGGTGAATTCGGGAGCATC 58.027 50.000 0.04 0.00 0.00 3.91
3287 3853 2.442236 AATGGTGAATTCGGGAGCAT 57.558 45.000 0.04 2.23 0.00 3.79
3288 3854 2.214376 AAATGGTGAATTCGGGAGCA 57.786 45.000 0.04 0.00 0.00 4.26
3289 3855 2.159240 GGAAAATGGTGAATTCGGGAGC 60.159 50.000 0.04 0.00 0.00 4.70
3290 3856 2.097466 CGGAAAATGGTGAATTCGGGAG 59.903 50.000 0.04 0.00 0.00 4.30
3291 3857 2.088423 CGGAAAATGGTGAATTCGGGA 58.912 47.619 0.04 0.00 0.00 5.14
3293 3859 1.472480 AGCGGAAAATGGTGAATTCGG 59.528 47.619 0.04 0.00 0.00 4.30
3294 3860 2.916716 CAAGCGGAAAATGGTGAATTCG 59.083 45.455 0.04 0.00 0.00 3.34
3295 3861 3.253230 CCAAGCGGAAAATGGTGAATTC 58.747 45.455 0.00 0.00 0.00 2.17
3296 3862 2.612721 GCCAAGCGGAAAATGGTGAATT 60.613 45.455 0.00 0.00 36.57 2.17
3297 3863 1.066929 GCCAAGCGGAAAATGGTGAAT 60.067 47.619 0.00 0.00 36.57 2.57
3298 3864 0.316841 GCCAAGCGGAAAATGGTGAA 59.683 50.000 0.00 0.00 36.57 3.18
3455 4073 1.817099 CTCCAAGCACGCATCCTCC 60.817 63.158 0.00 0.00 0.00 4.30
3456 4074 2.467826 GCTCCAAGCACGCATCCTC 61.468 63.158 0.00 0.00 41.89 3.71
3457 4075 2.437359 GCTCCAAGCACGCATCCT 60.437 61.111 0.00 0.00 41.89 3.24
3570 4195 1.557443 CCCTTCTGCGTGTTGTCGAC 61.557 60.000 9.11 9.11 0.00 4.20
3571 4196 1.300620 CCCTTCTGCGTGTTGTCGA 60.301 57.895 0.00 0.00 0.00 4.20
3572 4197 2.954753 GCCCTTCTGCGTGTTGTCG 61.955 63.158 0.00 0.00 0.00 4.35
3573 4198 1.598130 AGCCCTTCTGCGTGTTGTC 60.598 57.895 0.00 0.00 36.02 3.18
3581 4206 2.044551 CTTCCCCAGCCCTTCTGC 60.045 66.667 0.00 0.00 41.50 4.26
3622 4247 3.015145 CCCTGTCCCCCGTCCAAT 61.015 66.667 0.00 0.00 0.00 3.16
3757 4383 6.890663 ATGCCATTAAATCAATGAACAACG 57.109 33.333 0.00 0.00 45.99 4.10
3773 4404 4.583489 GGATCTCATGTCAGAAATGCCATT 59.417 41.667 0.00 0.00 0.00 3.16
3779 4410 5.531659 GCATCTTGGATCTCATGTCAGAAAT 59.468 40.000 0.00 0.00 0.00 2.17
3782 4413 3.710165 AGCATCTTGGATCTCATGTCAGA 59.290 43.478 0.00 0.00 0.00 3.27
3788 4419 1.347050 CCGGAGCATCTTGGATCTCAT 59.653 52.381 0.00 0.00 33.35 2.90
3796 4427 1.065102 CATTGAAGCCGGAGCATCTTG 59.935 52.381 5.05 0.00 43.56 3.02
3814 4449 1.504647 CCATCGCAATCGCAGAGCAT 61.505 55.000 0.00 0.00 43.63 3.79
3853 4489 7.809331 TGATGCACACTTGTAAGAAATGAAATC 59.191 33.333 0.00 2.78 0.00 2.17
3854 4490 7.596248 GTGATGCACACTTGTAAGAAATGAAAT 59.404 33.333 10.87 0.00 45.13 2.17
3983 4674 1.037030 TCAGATTTGAATGGCCGGGC 61.037 55.000 23.42 23.42 0.00 6.13
3984 4675 1.696063 ATCAGATTTGAATGGCCGGG 58.304 50.000 2.18 0.00 36.78 5.73
4195 5899 2.612212 GAGTACGTGCCAAATATGTGGG 59.388 50.000 14.08 0.00 39.26 4.61
4198 5902 5.989777 GGATAAGAGTACGTGCCAAATATGT 59.010 40.000 0.00 0.00 0.00 2.29
4209 5913 2.158490 GGAGGGAGGGATAAGAGTACGT 60.158 54.545 0.00 0.00 0.00 3.57
4219 5923 4.124126 GGTGGGGGAGGGAGGGAT 62.124 72.222 0.00 0.00 0.00 3.85
4245 5949 3.364068 CCGTTTGCACAAAAACCGTTTTT 60.364 39.130 14.89 14.89 43.20 1.94
4246 5950 2.157863 CCGTTTGCACAAAAACCGTTTT 59.842 40.909 3.29 3.29 36.83 2.43
4247 5951 1.727335 CCGTTTGCACAAAAACCGTTT 59.273 42.857 0.00 0.00 36.83 3.60
4248 5952 1.351153 CCGTTTGCACAAAAACCGTT 58.649 45.000 0.00 0.00 36.83 4.44
4249 5953 1.079317 GCCGTTTGCACAAAAACCGT 61.079 50.000 0.00 0.00 40.77 4.83
4250 5954 1.633697 GCCGTTTGCACAAAAACCG 59.366 52.632 0.00 0.00 40.77 4.44
4260 5964 2.261361 GGTGGGAATGCCGTTTGC 59.739 61.111 0.00 0.00 41.77 3.68
4261 5965 1.595093 GAGGGTGGGAATGCCGTTTG 61.595 60.000 0.00 0.00 33.83 2.93
4262 5966 1.304134 GAGGGTGGGAATGCCGTTT 60.304 57.895 0.00 0.00 33.83 3.60
4263 5967 2.355115 GAGGGTGGGAATGCCGTT 59.645 61.111 0.00 0.00 33.83 4.44
4264 5968 3.728373 GGAGGGTGGGAATGCCGT 61.728 66.667 0.00 0.00 33.83 5.68
4265 5969 4.506255 GGGAGGGTGGGAATGCCG 62.506 72.222 0.00 0.00 33.83 5.69
4266 5970 3.023735 AGGGAGGGTGGGAATGCC 61.024 66.667 0.00 0.00 0.00 4.40
4267 5971 2.003548 AGAGGGAGGGTGGGAATGC 61.004 63.158 0.00 0.00 0.00 3.56
4268 5972 1.639635 CCAGAGGGAGGGTGGGAATG 61.640 65.000 0.00 0.00 35.59 2.67
4269 5973 1.308216 CCAGAGGGAGGGTGGGAAT 60.308 63.158 0.00 0.00 35.59 3.01
4270 5974 2.124996 CCAGAGGGAGGGTGGGAA 59.875 66.667 0.00 0.00 35.59 3.97
4271 5975 3.208592 ACCAGAGGGAGGGTGGGA 61.209 66.667 0.00 0.00 35.67 4.37
4272 5976 2.689034 GACCAGAGGGAGGGTGGG 60.689 72.222 0.00 0.00 37.57 4.61
4273 5977 1.229658 AAGACCAGAGGGAGGGTGG 60.230 63.158 0.00 0.00 37.57 4.61
4274 5978 0.252467 AGAAGACCAGAGGGAGGGTG 60.252 60.000 0.00 0.00 37.57 4.61
4275 5979 0.041982 GAGAAGACCAGAGGGAGGGT 59.958 60.000 0.00 0.00 40.96 4.34
4276 5980 1.040339 CGAGAAGACCAGAGGGAGGG 61.040 65.000 0.00 0.00 38.05 4.30
4277 5981 1.671901 GCGAGAAGACCAGAGGGAGG 61.672 65.000 0.00 0.00 38.05 4.30
4278 5982 1.671901 GGCGAGAAGACCAGAGGGAG 61.672 65.000 0.00 0.00 38.05 4.30
4279 5983 1.682684 GGCGAGAAGACCAGAGGGA 60.683 63.158 0.00 0.00 38.05 4.20
4280 5984 2.896443 GGCGAGAAGACCAGAGGG 59.104 66.667 0.00 0.00 41.29 4.30
4287 5991 2.167861 GTGATGCGGGCGAGAAGAC 61.168 63.158 0.00 0.00 0.00 3.01
4288 5992 2.184322 GTGATGCGGGCGAGAAGA 59.816 61.111 0.00 0.00 0.00 2.87
4289 5993 2.169789 CAGTGATGCGGGCGAGAAG 61.170 63.158 0.00 0.00 0.00 2.85
4290 5994 2.125552 CAGTGATGCGGGCGAGAA 60.126 61.111 0.00 0.00 0.00 2.87
4291 5995 4.819761 GCAGTGATGCGGGCGAGA 62.820 66.667 0.00 0.00 0.00 4.04
4296 6000 4.864334 GGGAGGCAGTGATGCGGG 62.864 72.222 0.00 0.00 35.24 6.13
4297 6001 4.864334 GGGGAGGCAGTGATGCGG 62.864 72.222 0.00 0.00 35.24 5.69
4298 6002 3.746949 GAGGGGAGGCAGTGATGCG 62.747 68.421 0.00 0.00 35.24 4.73
4299 6003 2.191641 GAGGGGAGGCAGTGATGC 59.808 66.667 0.00 0.00 0.00 3.91
4300 6004 2.750657 GGGAGGGGAGGCAGTGATG 61.751 68.421 0.00 0.00 0.00 3.07
4301 6005 2.367512 GGGAGGGGAGGCAGTGAT 60.368 66.667 0.00 0.00 0.00 3.06
4302 6006 3.615811 AGGGAGGGGAGGCAGTGA 61.616 66.667 0.00 0.00 0.00 3.41
4303 6007 3.086600 GAGGGAGGGGAGGCAGTG 61.087 72.222 0.00 0.00 0.00 3.66
4304 6008 4.787280 CGAGGGAGGGGAGGCAGT 62.787 72.222 0.00 0.00 0.00 4.40
4309 6013 4.517934 TACGGCGAGGGAGGGGAG 62.518 72.222 16.62 0.00 0.00 4.30
4310 6014 4.828296 GTACGGCGAGGGAGGGGA 62.828 72.222 16.62 0.00 0.00 4.81
4311 6015 2.710237 ATAGTACGGCGAGGGAGGGG 62.710 65.000 16.62 0.00 0.00 4.79
4312 6016 1.228490 ATAGTACGGCGAGGGAGGG 60.228 63.158 16.62 0.00 0.00 4.30
4313 6017 0.536687 TGATAGTACGGCGAGGGAGG 60.537 60.000 16.62 0.00 0.00 4.30
4314 6018 0.592148 GTGATAGTACGGCGAGGGAG 59.408 60.000 16.62 0.00 0.00 4.30
4315 6019 0.107066 TGTGATAGTACGGCGAGGGA 60.107 55.000 16.62 0.00 0.00 4.20
4316 6020 0.959553 ATGTGATAGTACGGCGAGGG 59.040 55.000 16.62 0.00 0.00 4.30
4317 6021 3.439129 TCATATGTGATAGTACGGCGAGG 59.561 47.826 16.62 0.00 0.00 4.63
4318 6022 4.404324 GTCATATGTGATAGTACGGCGAG 58.596 47.826 16.62 0.00 36.60 5.03
4319 6023 3.189910 GGTCATATGTGATAGTACGGCGA 59.810 47.826 16.62 0.00 36.60 5.54
4320 6024 3.499048 GGTCATATGTGATAGTACGGCG 58.501 50.000 4.80 4.80 36.60 6.46
4321 6025 3.499048 CGGTCATATGTGATAGTACGGC 58.501 50.000 1.90 0.00 36.60 5.68
4322 6026 3.190744 AGCGGTCATATGTGATAGTACGG 59.809 47.826 1.90 0.00 36.60 4.02
4323 6027 4.421033 AGCGGTCATATGTGATAGTACG 57.579 45.455 1.90 0.00 36.60 3.67
4324 6028 5.342525 CGAAAGCGGTCATATGTGATAGTAC 59.657 44.000 1.90 0.00 36.60 2.73
4325 6029 5.458015 CGAAAGCGGTCATATGTGATAGTA 58.542 41.667 1.90 0.00 36.60 1.82
4326 6030 4.299155 CGAAAGCGGTCATATGTGATAGT 58.701 43.478 1.90 0.00 36.60 2.12
4327 6031 4.893036 CGAAAGCGGTCATATGTGATAG 57.107 45.455 1.90 0.00 36.60 2.08
4343 6047 3.952628 GACTGGGGACGGCCGAAAG 62.953 68.421 35.90 21.76 41.93 2.62
4344 6048 4.011517 GACTGGGGACGGCCGAAA 62.012 66.667 35.90 10.96 41.93 3.46
4351 6055 3.818121 TTGTTGCGGACTGGGGACG 62.818 63.158 0.00 0.00 0.00 4.79
4352 6056 2.112297 TTGTTGCGGACTGGGGAC 59.888 61.111 0.00 0.00 0.00 4.46
4353 6057 2.112297 GTTGTTGCGGACTGGGGA 59.888 61.111 0.00 0.00 0.00 4.81
4354 6058 3.353836 CGTTGTTGCGGACTGGGG 61.354 66.667 0.00 0.00 0.00 4.96
4355 6059 1.671054 ATCGTTGTTGCGGACTGGG 60.671 57.895 0.00 0.00 0.00 4.45
4356 6060 1.227999 ACATCGTTGTTGCGGACTGG 61.228 55.000 0.00 0.00 29.55 4.00
4357 6061 0.163788 GACATCGTTGTTGCGGACTG 59.836 55.000 0.00 0.00 35.79 3.51
4358 6062 0.249699 TGACATCGTTGTTGCGGACT 60.250 50.000 0.00 0.00 35.79 3.85
4359 6063 0.796312 ATGACATCGTTGTTGCGGAC 59.204 50.000 0.00 0.00 35.79 4.79
4360 6064 0.795698 CATGACATCGTTGTTGCGGA 59.204 50.000 0.00 0.00 35.79 5.54
4361 6065 0.516877 ACATGACATCGTTGTTGCGG 59.483 50.000 0.00 0.00 35.79 5.69
4362 6066 2.757896 GTACATGACATCGTTGTTGCG 58.242 47.619 0.00 0.00 35.79 4.85
4363 6067 2.156891 ACGTACATGACATCGTTGTTGC 59.843 45.455 0.00 0.00 35.79 4.17
4364 6068 4.383774 AACGTACATGACATCGTTGTTG 57.616 40.909 11.33 0.00 43.20 3.33
4368 6072 1.730064 GGCAACGTACATGACATCGTT 59.270 47.619 0.00 7.39 45.16 3.85
4369 6073 1.067142 AGGCAACGTACATGACATCGT 60.067 47.619 0.00 1.54 46.39 3.73
4370 6074 1.588404 GAGGCAACGTACATGACATCG 59.412 52.381 0.00 0.88 46.39 3.84
4371 6075 1.588404 CGAGGCAACGTACATGACATC 59.412 52.381 0.00 1.19 46.39 3.06
4372 6076 1.640428 CGAGGCAACGTACATGACAT 58.360 50.000 0.00 0.00 46.39 3.06
4373 6077 3.116073 CGAGGCAACGTACATGACA 57.884 52.632 0.00 0.00 46.39 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.