AutoCloner

Multiple sequence alignment - TraesCS6D01G287400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G287400	chr6D	100.000	4467	0	0	1	4467	396611104	396606638	0.000000e+00	8250.0
1	TraesCS6D01G287400	chr6D	75.966	233	45	4	1	223	38362243	38362474	4.720000e-20	110.0
2	TraesCS6D01G287400	chr6B	89.590	2123	137	48	512	2601	593266154	593264083	0.000000e+00	2619.0
3	TraesCS6D01G287400	chr6B	94.100	678	25	8	3056	3731	593263698	593263034	0.000000e+00	1016.0
4	TraesCS6D01G287400	chr6B	90.364	550	26	16	3714	4261	593260107	593259583	0.000000e+00	697.0
5	TraesCS6D01G287400	chr6B	90.547	402	28	4	2632	3029	593264087	593263692	1.420000e-144	523.0
6	TraesCS6D01G287400	chr6B	89.671	213	20	1	4257	4467	593129034	593128822	2.050000e-68	270.0
7	TraesCS6D01G287400	chr6A	91.361	1447	68	22	3060	4467	542933805	542932377	0.000000e+00	1927.0
8	TraesCS6D01G287400	chr6A	91.971	1370	71	12	428	1778	542936704	542935355	0.000000e+00	1884.0
9	TraesCS6D01G287400	chr6A	92.864	1037	44	19	1776	2791	542935114	542934087	0.000000e+00	1478.0
10	TraesCS6D01G287400	chr6A	92.929	198	11	2	2818	3015	542934001	542933807	7.310000e-73	285.0
11	TraesCS6D01G287400	chrUn	85.989	364	41	6	1	364	87831717	87832070	9.070000e-102	381.0
12	TraesCS6D01G287400	chrUn	83.333	234	26	6	1272	1498	15459526	15459753	2.110000e-48	204.0
13	TraesCS6D01G287400	chrUn	89.583	144	13	2	28	170	279693080	279693222	9.870000e-42	182.0
14	TraesCS6D01G287400	chrUn	89.583	144	13	2	28	170	322440664	322440806	9.870000e-42	182.0
15	TraesCS6D01G287400	chrUn	82.143	140	21	4	1970	2108	372165980	372165844	2.820000e-22	117.0
16	TraesCS6D01G287400	chrUn	79.577	142	26	3	1972	2113	15462928	15463066	1.020000e-16	99.0
17	TraesCS6D01G287400	chrUn	82.143	112	19	1	2003	2114	15940369	15940479	1.320000e-15	95.3
18	TraesCS6D01G287400	chr2D	85.385	260	31	4	3315	3569	2759962	2760219	3.430000e-66	263.0
19	TraesCS6D01G287400	chr2D	88.824	170	16	3	1260	1428	2750628	2750795	5.860000e-49	206.0
20	TraesCS6D01G287400	chr2D	91.429	70	6	0	2003	2072	2753955	2754024	3.680000e-16	97.1
21	TraesCS6D01G287400	chr2B	83.803	284	38	5	3315	3593	9016568	9016288	3.430000e-66	263.0
22	TraesCS6D01G287400	chr2B	87.356	174	20	2	1268	1440	9033882	9033710	9.800000e-47	198.0
23	TraesCS6D01G287400	chr2B	79.137	278	37	9	3319	3590	8061253	8061515	5.940000e-39	172.0
24	TraesCS6D01G287400	chr2B	79.137	278	37	9	3319	3590	8217012	8217274	5.940000e-39	172.0
25	TraesCS6D01G287400	chr2B	82.143	140	21	4	1970	2108	8034280	8034416	2.820000e-22	117.0
26	TraesCS6D01G287400	chr2B	82.143	140	21	4	1970	2108	8198204	8198340	2.820000e-22	117.0
27	TraesCS6D01G287400	chr2B	91.429	70	6	0	2003	2072	9029805	9029736	3.680000e-16	97.1
28	TraesCS6D01G287400	chr3D	88.166	169	18	2	3	170	11210416	11210249	2.730000e-47	200.0
29	TraesCS6D01G287400	chr3A	87.574	169	19	2	3	170	17860121	17859954	1.270000e-45	195.0
30	TraesCS6D01G287400	chr3A	89.583	144	13	2	28	170	18802389	18802247	9.870000e-42	182.0
31	TraesCS6D01G287400	chr7D	79.899	199	28	9	12	201	594147623	594147818	7.790000e-28	135.0
32	TraesCS6D01G287400	chr7D	77.273	220	36	8	1	209	166482947	166483163	2.820000e-22	117.0
33	TraesCS6D01G287400	chr3B	75.879	199	33	8	19	205	140485403	140485598	2.210000e-13	87.9
34	TraesCS6D01G287400	chr1A	78.899	109	18	5	134	240	30824264	30824369	8.020000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G287400	chr6D	396606638	396611104	4466	True	8250.00	8250	100.00000	1	4467	1	chr6D.!!$R1	4466
1	TraesCS6D01G287400	chr6B	593259583	593266154	6571	True	1213.75	2619	91.15025	512	4261	4	chr6B.!!$R2	3749
2	TraesCS6D01G287400	chr6A	542932377	542936704	4327	True	1393.50	1927	92.28125	428	4467	4	chr6A.!!$R1	4039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
321	322	0.031994	ACAAAACAATGCGGCACTCC	59.968	50.000	4.03	0.0	0.00	3.85	F
1149	1172	0.874175	TCGGTAATTGATCGCTGGCG	60.874	55.000	8.80	8.8	41.35	5.69	F
1205	1228	1.733526	GTTCTTGTTGGGCGCACTT	59.266	52.632	12.74	0.0	0.00	3.16	F
2895	3259	0.330604	AGCGGAGTACCTACCAGTCA	59.669	55.000	0.00	0.0	0.00	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1244	1267	1.509644	AACACACCACAGAGCATGCG	61.510	55.000	13.01	0.00	4.73	R
2347	2633	0.729116	CGGTATGCTGAGCTGTTTGG	59.271	55.000	5.83	0.00	3.28	R
3042	3406	0.855598	AGTACTATAGGTCCCCCGCA	59.144	55.000	4.43	35.12	5.69	R
4430	7779	2.969262	CCCTCTCCTCACTTCCTATTCC	59.031	54.545	0.00	0.00	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	5.735766	ACCCAACTCAGATTAGACTTAAGC	58.264	41.667	1.29	0.00	0.00	3.09
27	28	5.485708	ACCCAACTCAGATTAGACTTAAGCT	59.514	40.000	1.29	3.61	35.98	3.74
28	29	6.013293	ACCCAACTCAGATTAGACTTAAGCTT	60.013	38.462	3.48	3.48	33.42	3.74
29	30	6.881602	CCCAACTCAGATTAGACTTAAGCTTT	59.118	38.462	3.20	0.00	33.42	3.51
30	31	7.065204	CCCAACTCAGATTAGACTTAAGCTTTC	59.935	40.741	3.20	0.00	33.42	2.62
31	32	7.604164	CCAACTCAGATTAGACTTAAGCTTTCA	59.396	37.037	3.20	0.00	33.42	2.69
32	33	8.439286	CAACTCAGATTAGACTTAAGCTTTCAC	58.561	37.037	3.20	0.00	33.42	3.18
33	34	7.100409	ACTCAGATTAGACTTAAGCTTTCACC	58.900	38.462	3.20	0.00	33.42	4.02
34	35	6.407202	TCAGATTAGACTTAAGCTTTCACCC	58.593	40.000	3.20	0.00	33.42	4.61
35	36	5.586643	CAGATTAGACTTAAGCTTTCACCCC	59.413	44.000	3.20	0.00	33.42	4.95
36	37	2.474410	AGACTTAAGCTTTCACCCCG	57.526	50.000	3.20	0.00	0.00	5.73
37	38	1.003233	AGACTTAAGCTTTCACCCCGG	59.997	52.381	3.20	0.00	0.00	5.73
38	39	1.002773	GACTTAAGCTTTCACCCCGGA	59.997	52.381	3.20	0.00	0.00	5.14
39	40	1.003233	ACTTAAGCTTTCACCCCGGAG	59.997	52.381	3.20	0.00	0.00	4.63
40	41	0.322187	TTAAGCTTTCACCCCGGAGC	60.322	55.000	3.20	1.78	35.42	4.70
41	42	1.198759	TAAGCTTTCACCCCGGAGCT	61.199	55.000	3.20	4.83	46.71	4.09
42	43	2.436824	GCTTTCACCCCGGAGCTC	60.437	66.667	0.73	4.71	32.54	4.09
43	44	3.068881	CTTTCACCCCGGAGCTCA	58.931	61.111	17.19	0.00	0.00	4.26
44	45	1.374947	CTTTCACCCCGGAGCTCAA	59.625	57.895	17.19	0.00	0.00	3.02
45	46	0.674895	CTTTCACCCCGGAGCTCAAG	60.675	60.000	17.19	8.78	0.00	3.02
46	47	1.125093	TTTCACCCCGGAGCTCAAGA	61.125	55.000	17.19	0.57	0.00	3.02
47	48	1.827399	TTCACCCCGGAGCTCAAGAC	61.827	60.000	17.19	0.00	0.00	3.01
48	49	3.003763	ACCCCGGAGCTCAAGACC	61.004	66.667	17.19	0.00	0.00	3.85
49	50	3.003173	CCCCGGAGCTCAAGACCA	61.003	66.667	17.19	0.00	0.00	4.02
50	51	2.581354	CCCGGAGCTCAAGACCAG	59.419	66.667	17.19	0.00	0.00	4.00
51	52	2.581354	CCGGAGCTCAAGACCAGG	59.419	66.667	17.19	2.95	0.00	4.45
52	53	2.286523	CCGGAGCTCAAGACCAGGT	61.287	63.158	17.19	0.00	0.00	4.00
53	54	1.079543	CGGAGCTCAAGACCAGGTG	60.080	63.158	17.19	0.00	0.00	4.00
54	55	1.376553	GGAGCTCAAGACCAGGTGC	60.377	63.158	17.19	0.00	0.00	5.01
55	56	1.676384	GAGCTCAAGACCAGGTGCT	59.324	57.895	9.40	0.00	0.00	4.40
56	57	0.390998	GAGCTCAAGACCAGGTGCTC	60.391	60.000	9.40	11.97	39.74	4.26
57	58	1.739562	GCTCAAGACCAGGTGCTCG	60.740	63.158	0.00	0.00	0.00	5.03
58	59	1.967535	CTCAAGACCAGGTGCTCGA	59.032	57.895	0.00	0.00	0.00	4.04
59	60	0.108898	CTCAAGACCAGGTGCTCGAG	60.109	60.000	8.45	8.45	0.00	4.04
60	61	0.827925	TCAAGACCAGGTGCTCGAGT	60.828	55.000	15.13	0.00	0.00	4.18
61	62	0.888619	CAAGACCAGGTGCTCGAGTA	59.111	55.000	15.13	6.73	0.00	2.59
62	63	1.135257	CAAGACCAGGTGCTCGAGTAG	60.135	57.143	15.13	0.00	0.00	2.57
73	74	0.375454	CTCGAGTAGCACCACTCTCG	59.625	60.000	3.62	7.03	42.36	4.04
74	75	0.036671	TCGAGTAGCACCACTCTCGA	60.037	55.000	11.17	11.17	44.92	4.04
75	76	0.803117	CGAGTAGCACCACTCTCGAA	59.197	55.000	7.51	0.00	43.11	3.71
76	77	1.202087	CGAGTAGCACCACTCTCGAAG	60.202	57.143	7.51	0.00	43.11	3.79
77	78	1.813786	GAGTAGCACCACTCTCGAAGT	59.186	52.381	6.03	0.00	41.49	3.01
78	79	1.813786	AGTAGCACCACTCTCGAAGTC	59.186	52.381	0.00	0.00	35.45	3.01
79	80	1.540267	GTAGCACCACTCTCGAAGTCA	59.460	52.381	0.00	0.00	35.45	3.41
80	81	0.315568	AGCACCACTCTCGAAGTCAC	59.684	55.000	0.00	0.00	35.45	3.67
81	82	0.315568	GCACCACTCTCGAAGTCACT	59.684	55.000	0.00	0.00	35.45	3.41
82	83	1.540267	GCACCACTCTCGAAGTCACTA	59.460	52.381	0.00	0.00	35.45	2.74
83	84	2.030185	GCACCACTCTCGAAGTCACTAA	60.030	50.000	0.00	0.00	35.45	2.24
84	85	3.367498	GCACCACTCTCGAAGTCACTAAT	60.367	47.826	0.00	0.00	35.45	1.73
85	86	4.169508	CACCACTCTCGAAGTCACTAATG	58.830	47.826	0.00	0.00	35.45	1.90
86	87	3.827302	ACCACTCTCGAAGTCACTAATGT	59.173	43.478	0.00	0.00	35.45	2.71
87	88	4.169508	CCACTCTCGAAGTCACTAATGTG	58.830	47.826	0.00	0.00	45.07	3.21
88	89	4.169508	CACTCTCGAAGTCACTAATGTGG	58.830	47.826	0.00	0.00	43.94	4.17
89	90	3.193691	ACTCTCGAAGTCACTAATGTGGG	59.806	47.826	0.00	0.00	43.94	4.61
90	91	3.162666	TCTCGAAGTCACTAATGTGGGT	58.837	45.455	0.00	0.00	43.94	4.51
91	92	3.576982	TCTCGAAGTCACTAATGTGGGTT	59.423	43.478	0.00	0.00	43.94	4.11
92	93	3.921677	TCGAAGTCACTAATGTGGGTTC	58.078	45.455	0.00	0.00	43.94	3.62
93	94	2.666508	CGAAGTCACTAATGTGGGTTCG	59.333	50.000	14.32	14.32	44.61	3.95
94	95	2.094762	AGTCACTAATGTGGGTTCGC	57.905	50.000	0.00	0.00	43.94	4.70
95	96	1.084289	GTCACTAATGTGGGTTCGCC	58.916	55.000	0.00	0.00	43.94	5.54
96	97	0.687920	TCACTAATGTGGGTTCGCCA	59.312	50.000	0.00	0.00	43.94	5.69
97	98	0.802494	CACTAATGTGGGTTCGCCAC	59.198	55.000	3.93	3.93	40.33	5.01
98	99	0.322187	ACTAATGTGGGTTCGCCACC	60.322	55.000	8.04	1.92	46.46	4.61
107	108	1.601166	GGTTCGCCACCACTTTTACT	58.399	50.000	0.00	0.00	46.42	2.24
108	109	1.534163	GGTTCGCCACCACTTTTACTC	59.466	52.381	0.00	0.00	46.42	2.59
109	110	2.215196	GTTCGCCACCACTTTTACTCA	58.785	47.619	0.00	0.00	0.00	3.41
110	111	2.614983	GTTCGCCACCACTTTTACTCAA	59.385	45.455	0.00	0.00	0.00	3.02
111	112	3.134574	TCGCCACCACTTTTACTCAAT	57.865	42.857	0.00	0.00	0.00	2.57
112	113	3.482436	TCGCCACCACTTTTACTCAATT	58.518	40.909	0.00	0.00	0.00	2.32
113	114	4.643463	TCGCCACCACTTTTACTCAATTA	58.357	39.130	0.00	0.00	0.00	1.40
114	115	4.693566	TCGCCACCACTTTTACTCAATTAG	59.306	41.667	0.00	0.00	0.00	1.73
115	116	4.693566	CGCCACCACTTTTACTCAATTAGA	59.306	41.667	0.00	0.00	0.00	2.10
135	136	2.007360	GCAGCTATATGCGATGAGCT	57.993	50.000	0.00	0.00	46.08	4.09
143	144	2.482374	GCGATGAGCTGCACAACC	59.518	61.111	3.43	0.00	44.04	3.77
144	145	2.327343	GCGATGAGCTGCACAACCA	61.327	57.895	3.43	0.00	44.04	3.67
145	146	1.651240	GCGATGAGCTGCACAACCAT	61.651	55.000	3.43	0.00	44.04	3.55
146	147	0.376152	CGATGAGCTGCACAACCATC	59.624	55.000	3.43	6.43	0.00	3.51
147	148	0.737219	GATGAGCTGCACAACCATCC	59.263	55.000	3.43	0.00	0.00	3.51
148	149	0.682209	ATGAGCTGCACAACCATCCC	60.682	55.000	3.43	0.00	0.00	3.85
149	150	1.001641	GAGCTGCACAACCATCCCT	60.002	57.895	1.02	0.00	0.00	4.20
150	151	0.610232	GAGCTGCACAACCATCCCTT	60.610	55.000	1.02	0.00	0.00	3.95
151	152	0.178953	AGCTGCACAACCATCCCTTT	60.179	50.000	1.02	0.00	0.00	3.11
152	153	0.037975	GCTGCACAACCATCCCTTTG	60.038	55.000	0.00	0.00	0.00	2.77
153	154	0.037975	CTGCACAACCATCCCTTTGC	60.038	55.000	0.00	0.00	0.00	3.68
154	155	1.080569	GCACAACCATCCCTTTGCG	60.081	57.895	0.00	0.00	0.00	4.85
155	156	1.805428	GCACAACCATCCCTTTGCGT	61.805	55.000	0.00	0.00	0.00	5.24
156	157	0.240945	CACAACCATCCCTTTGCGTC	59.759	55.000	0.00	0.00	0.00	5.19
157	158	0.179004	ACAACCATCCCTTTGCGTCA	60.179	50.000	0.00	0.00	0.00	4.35
158	159	0.958091	CAACCATCCCTTTGCGTCAA	59.042	50.000	0.00	0.00	0.00	3.18
159	160	1.068333	CAACCATCCCTTTGCGTCAAG	60.068	52.381	0.00	0.00	0.00	3.02
160	161	0.110486	ACCATCCCTTTGCGTCAAGT	59.890	50.000	0.00	0.00	0.00	3.16
161	162	0.804989	CCATCCCTTTGCGTCAAGTC	59.195	55.000	0.00	0.00	0.00	3.01
162	163	0.443869	CATCCCTTTGCGTCAAGTCG	59.556	55.000	0.00	0.00	0.00	4.18
163	164	0.673644	ATCCCTTTGCGTCAAGTCGG	60.674	55.000	0.00	0.00	0.00	4.79
164	165	1.597027	CCCTTTGCGTCAAGTCGGT	60.597	57.895	0.00	0.00	0.00	4.69
165	166	1.566018	CCCTTTGCGTCAAGTCGGTC	61.566	60.000	0.00	0.00	0.00	4.79
166	167	1.487231	CTTTGCGTCAAGTCGGTCG	59.513	57.895	0.00	0.00	0.00	4.79
167	168	1.213094	CTTTGCGTCAAGTCGGTCGT	61.213	55.000	0.00	0.00	0.00	4.34
168	169	1.210545	TTTGCGTCAAGTCGGTCGTC	61.211	55.000	0.00	0.00	0.00	4.20
169	170	2.804090	GCGTCAAGTCGGTCGTCC	60.804	66.667	0.00	0.00	0.00	4.79
170	171	2.640989	CGTCAAGTCGGTCGTCCA	59.359	61.111	0.00	0.00	0.00	4.02
171	172	1.211969	CGTCAAGTCGGTCGTCCAT	59.788	57.895	0.00	0.00	0.00	3.41
172	173	0.448990	CGTCAAGTCGGTCGTCCATA	59.551	55.000	0.00	0.00	0.00	2.74
173	174	1.135603	CGTCAAGTCGGTCGTCCATAA	60.136	52.381	0.00	0.00	0.00	1.90
174	175	2.479049	CGTCAAGTCGGTCGTCCATAAT	60.479	50.000	0.00	0.00	0.00	1.28
175	176	3.518590	GTCAAGTCGGTCGTCCATAATT	58.481	45.455	0.00	0.00	0.00	1.40
176	177	3.930848	GTCAAGTCGGTCGTCCATAATTT	59.069	43.478	0.00	0.00	0.00	1.82
177	178	5.104374	GTCAAGTCGGTCGTCCATAATTTA	58.896	41.667	0.00	0.00	0.00	1.40
178	179	5.005107	GTCAAGTCGGTCGTCCATAATTTAC	59.995	44.000	0.00	0.00	0.00	2.01
179	180	4.724074	AGTCGGTCGTCCATAATTTACA	57.276	40.909	0.00	0.00	0.00	2.41
180	181	5.272283	AGTCGGTCGTCCATAATTTACAT	57.728	39.130	0.00	0.00	0.00	2.29
181	182	5.667466	AGTCGGTCGTCCATAATTTACATT	58.333	37.500	0.00	0.00	0.00	2.71
182	183	6.110707	AGTCGGTCGTCCATAATTTACATTT	58.889	36.000	0.00	0.00	0.00	2.32
183	184	6.257193	AGTCGGTCGTCCATAATTTACATTTC	59.743	38.462	0.00	0.00	0.00	2.17
184	185	6.257193	GTCGGTCGTCCATAATTTACATTTCT	59.743	38.462	0.00	0.00	0.00	2.52
185	186	6.819649	TCGGTCGTCCATAATTTACATTTCTT	59.180	34.615	0.00	0.00	0.00	2.52
186	187	7.010738	TCGGTCGTCCATAATTTACATTTCTTC	59.989	37.037	0.00	0.00	0.00	2.87
187	188	7.415229	GGTCGTCCATAATTTACATTTCTTCC	58.585	38.462	0.00	0.00	0.00	3.46
188	189	7.282450	GGTCGTCCATAATTTACATTTCTTCCT	59.718	37.037	0.00	0.00	0.00	3.36
189	190	8.336080	GTCGTCCATAATTTACATTTCTTCCTC	58.664	37.037	0.00	0.00	0.00	3.71
190	191	7.223971	TCGTCCATAATTTACATTTCTTCCTCG	59.776	37.037	0.00	0.00	0.00	4.63
191	192	7.223971	CGTCCATAATTTACATTTCTTCCTCGA	59.776	37.037	0.00	0.00	0.00	4.04
192	193	8.889717	GTCCATAATTTACATTTCTTCCTCGAA	58.110	33.333	0.00	0.00	0.00	3.71
193	194	9.109393	TCCATAATTTACATTTCTTCCTCGAAG	57.891	33.333	0.00	0.00	40.65	3.79
194	195	8.893727	CCATAATTTACATTTCTTCCTCGAAGT	58.106	33.333	1.58	0.00	40.24	3.01
195	196	9.922305	CATAATTTACATTTCTTCCTCGAAGTC	57.078	33.333	1.58	0.00	40.24	3.01
196	197	7.979444	AATTTACATTTCTTCCTCGAAGTCA	57.021	32.000	1.58	0.00	40.24	3.41
197	198	7.979444	ATTTACATTTCTTCCTCGAAGTCAA	57.021	32.000	1.58	0.00	40.24	3.18
198	199	6.780706	TTACATTTCTTCCTCGAAGTCAAC	57.219	37.500	1.58	0.00	40.24	3.18
199	200	4.065789	ACATTTCTTCCTCGAAGTCAACC	58.934	43.478	1.58	0.00	40.24	3.77
200	201	3.830744	TTTCTTCCTCGAAGTCAACCA	57.169	42.857	1.58	0.00	40.24	3.67
201	202	2.814280	TCTTCCTCGAAGTCAACCAC	57.186	50.000	1.58	0.00	40.24	4.16
202	203	1.343465	TCTTCCTCGAAGTCAACCACC	59.657	52.381	1.58	0.00	40.24	4.61
203	204	0.032952	TTCCTCGAAGTCAACCACCG	59.967	55.000	0.00	0.00	0.00	4.94
204	205	1.374252	CCTCGAAGTCAACCACCGG	60.374	63.158	0.00	0.00	0.00	5.28
205	206	1.663739	CTCGAAGTCAACCACCGGA	59.336	57.895	9.46	0.00	0.00	5.14
206	207	0.246635	CTCGAAGTCAACCACCGGAT	59.753	55.000	9.46	0.00	0.00	4.18
207	208	0.245539	TCGAAGTCAACCACCGGATC	59.754	55.000	9.46	0.00	0.00	3.36
208	209	0.246635	CGAAGTCAACCACCGGATCT	59.753	55.000	9.46	0.00	0.00	2.75
209	210	1.475280	CGAAGTCAACCACCGGATCTA	59.525	52.381	9.46	0.00	0.00	1.98
210	211	2.100916	CGAAGTCAACCACCGGATCTAT	59.899	50.000	9.46	0.00	0.00	1.98
211	212	3.317149	CGAAGTCAACCACCGGATCTATA	59.683	47.826	9.46	0.00	0.00	1.31
212	213	4.556898	CGAAGTCAACCACCGGATCTATAG	60.557	50.000	9.46	0.00	0.00	1.31
213	214	4.180377	AGTCAACCACCGGATCTATAGA	57.820	45.455	9.46	4.57	0.00	1.98
214	215	4.543689	AGTCAACCACCGGATCTATAGAA	58.456	43.478	9.46	0.00	0.00	2.10
215	216	4.960469	AGTCAACCACCGGATCTATAGAAA	59.040	41.667	9.46	0.00	0.00	2.52
216	217	5.602978	AGTCAACCACCGGATCTATAGAAAT	59.397	40.000	9.46	0.00	0.00	2.17
217	218	5.696724	GTCAACCACCGGATCTATAGAAATG	59.303	44.000	9.46	0.00	0.00	2.32
218	219	5.600898	TCAACCACCGGATCTATAGAAATGA	59.399	40.000	9.46	0.00	0.00	2.57
219	220	6.099125	TCAACCACCGGATCTATAGAAATGAA	59.901	38.462	9.46	0.00	0.00	2.57
220	221	6.494666	ACCACCGGATCTATAGAAATGAAA	57.505	37.500	9.46	0.00	0.00	2.69
221	222	6.289064	ACCACCGGATCTATAGAAATGAAAC	58.711	40.000	9.46	0.00	0.00	2.78
222	223	6.099845	ACCACCGGATCTATAGAAATGAAACT	59.900	38.462	9.46	0.00	0.00	2.66
223	224	6.425114	CCACCGGATCTATAGAAATGAAACTG	59.575	42.308	9.46	0.00	0.00	3.16
224	225	6.986817	CACCGGATCTATAGAAATGAAACTGT	59.013	38.462	9.46	0.00	0.00	3.55
225	226	7.169982	CACCGGATCTATAGAAATGAAACTGTC	59.830	40.741	9.46	0.00	0.00	3.51
226	227	6.647067	CCGGATCTATAGAAATGAAACTGTCC	59.353	42.308	6.52	4.26	0.00	4.02
227	228	7.437748	CGGATCTATAGAAATGAAACTGTCCT	58.562	38.462	6.52	0.00	0.00	3.85
228	229	7.928706	CGGATCTATAGAAATGAAACTGTCCTT	59.071	37.037	6.52	0.00	0.00	3.36
234	235	8.794335	ATAGAAATGAAACTGTCCTTAAGACC	57.206	34.615	3.36	0.00	45.68	3.85
235	236	6.842676	AGAAATGAAACTGTCCTTAAGACCT	58.157	36.000	3.36	0.00	45.68	3.85
236	237	7.290813	AGAAATGAAACTGTCCTTAAGACCTT	58.709	34.615	3.36	0.00	45.68	3.50
237	238	7.780271	AGAAATGAAACTGTCCTTAAGACCTTT	59.220	33.333	3.36	1.85	45.68	3.11
238	239	7.511959	AATGAAACTGTCCTTAAGACCTTTC	57.488	36.000	3.36	9.89	45.68	2.62
239	240	5.054477	TGAAACTGTCCTTAAGACCTTTCG	58.946	41.667	3.36	0.00	45.68	3.46
240	241	3.679824	ACTGTCCTTAAGACCTTTCGG	57.320	47.619	3.36	0.00	45.68	4.30
242	243	3.244112	ACTGTCCTTAAGACCTTTCGGTG	60.244	47.826	3.36	0.00	45.73	4.94
243	244	2.038033	TGTCCTTAAGACCTTTCGGTGG	59.962	50.000	3.36	0.00	45.73	4.61
244	245	1.002773	TCCTTAAGACCTTTCGGTGGC	59.997	52.381	3.36	0.00	45.73	5.01
245	246	1.450025	CTTAAGACCTTTCGGTGGCC	58.550	55.000	0.00	0.00	45.73	5.36
246	247	0.766131	TTAAGACCTTTCGGTGGCCA	59.234	50.000	0.00	0.00	45.73	5.36
247	248	0.988832	TAAGACCTTTCGGTGGCCAT	59.011	50.000	9.72	0.00	45.73	4.40
248	249	0.112412	AAGACCTTTCGGTGGCCATT	59.888	50.000	9.72	0.00	45.73	3.16
249	250	0.609131	AGACCTTTCGGTGGCCATTG	60.609	55.000	9.72	4.44	45.73	2.82
250	251	0.893727	GACCTTTCGGTGGCCATTGT	60.894	55.000	9.72	0.00	45.73	2.71
251	252	0.402504	ACCTTTCGGTGGCCATTGTA	59.597	50.000	9.72	0.00	43.51	2.41
252	253	1.202952	ACCTTTCGGTGGCCATTGTAA	60.203	47.619	9.72	3.79	43.51	2.41
253	254	1.201414	CCTTTCGGTGGCCATTGTAAC	59.799	52.381	9.72	0.00	0.00	2.50
254	255	0.875728	TTTCGGTGGCCATTGTAACG	59.124	50.000	9.72	0.00	0.00	3.18
255	256	0.035036	TTCGGTGGCCATTGTAACGA	59.965	50.000	9.72	1.14	0.00	3.85
256	257	0.390603	TCGGTGGCCATTGTAACGAG	60.391	55.000	9.72	0.00	0.00	4.18
257	258	1.366111	CGGTGGCCATTGTAACGAGG	61.366	60.000	9.72	0.00	0.00	4.63
258	259	1.654023	GGTGGCCATTGTAACGAGGC	61.654	60.000	9.72	0.00	46.28	4.70
260	261	3.098555	GCCATTGTAACGAGGCCG	58.901	61.111	0.00	0.00	41.25	6.13
261	262	1.448893	GCCATTGTAACGAGGCCGA	60.449	57.895	0.00	0.00	41.25	5.54
262	263	1.702491	GCCATTGTAACGAGGCCGAC	61.702	60.000	0.00	0.00	41.25	4.79
263	264	0.390603	CCATTGTAACGAGGCCGACA	60.391	55.000	0.00	0.00	39.50	4.35
264	265	0.719465	CATTGTAACGAGGCCGACAC	59.281	55.000	0.00	0.00	39.50	3.67
265	266	0.606604	ATTGTAACGAGGCCGACACT	59.393	50.000	0.00	0.00	39.50	3.55
266	267	0.319211	TTGTAACGAGGCCGACACTG	60.319	55.000	0.00	0.00	39.50	3.66
267	268	2.092882	GTAACGAGGCCGACACTGC	61.093	63.158	0.00	0.00	39.50	4.40
268	269	2.273179	TAACGAGGCCGACACTGCT	61.273	57.895	0.00	0.00	39.50	4.24
269	270	0.961857	TAACGAGGCCGACACTGCTA	60.962	55.000	0.00	0.00	39.50	3.49
270	271	2.103143	CGAGGCCGACACTGCTAG	59.897	66.667	0.00	0.00	38.22	3.42
271	272	2.202810	GAGGCCGACACTGCTAGC	60.203	66.667	8.10	8.10	0.00	3.42
272	273	3.724914	GAGGCCGACACTGCTAGCC	62.725	68.421	13.29	0.00	44.20	3.93
275	276	3.449227	CCGACACTGCTAGCCGGA	61.449	66.667	20.63	0.00	42.49	5.14
276	277	2.103143	CGACACTGCTAGCCGGAG	59.897	66.667	13.29	5.57	37.07	4.63
277	278	2.701780	CGACACTGCTAGCCGGAGT	61.702	63.158	13.29	9.18	46.10	3.85
278	279	1.139947	GACACTGCTAGCCGGAGTC	59.860	63.158	13.29	14.17	43.01	3.36
279	280	1.595993	GACACTGCTAGCCGGAGTCA	61.596	60.000	20.86	0.00	43.01	3.41
280	281	0.972983	ACACTGCTAGCCGGAGTCAT	60.973	55.000	13.29	0.00	43.01	3.06
281	282	0.529337	CACTGCTAGCCGGAGTCATG	60.529	60.000	13.29	0.00	43.01	3.07
282	283	0.684479	ACTGCTAGCCGGAGTCATGA	60.684	55.000	13.29	0.00	40.68	3.07
283	284	0.249238	CTGCTAGCCGGAGTCATGAC	60.249	60.000	18.47	18.47	0.00	3.06
284	285	1.068250	GCTAGCCGGAGTCATGACC	59.932	63.158	22.21	13.24	0.00	4.02
286	287	2.685387	CTAGCCGGAGTCATGACCGC	62.685	65.000	22.21	17.39	46.59	5.68
288	289	4.873129	CCGGAGTCATGACCGCGG	62.873	72.222	26.86	26.86	46.59	6.46
289	290	4.129737	CGGAGTCATGACCGCGGT	62.130	66.667	34.89	34.89	42.55	5.68
290	291	2.767445	CGGAGTCATGACCGCGGTA	61.767	63.158	34.36	19.93	42.55	4.02
291	292	1.740285	GGAGTCATGACCGCGGTAT	59.260	57.895	34.36	21.31	0.00	2.73
292	293	0.956633	GGAGTCATGACCGCGGTATA	59.043	55.000	34.36	24.01	0.00	1.47
293	294	1.068472	GGAGTCATGACCGCGGTATAG	60.068	57.143	34.36	22.99	0.00	1.31
294	295	0.314302	AGTCATGACCGCGGTATAGC	59.686	55.000	34.36	19.85	0.00	2.97
295	296	0.666577	GTCATGACCGCGGTATAGCC	60.667	60.000	34.36	19.42	0.00	3.93
296	297	1.110518	TCATGACCGCGGTATAGCCA	61.111	55.000	34.36	24.91	36.97	4.75
297	298	0.037326	CATGACCGCGGTATAGCCAT	60.037	55.000	34.36	26.06	36.97	4.40
298	299	1.203758	CATGACCGCGGTATAGCCATA	59.796	52.381	34.36	10.42	36.97	2.74
299	300	0.599558	TGACCGCGGTATAGCCATAC	59.400	55.000	34.36	16.13	36.97	2.39
300	301	0.886563	GACCGCGGTATAGCCATACT	59.113	55.000	34.36	2.67	37.70	2.12
301	302	0.601558	ACCGCGGTATAGCCATACTG	59.398	55.000	33.34	6.74	44.01	2.74
302	303	0.885879	CCGCGGTATAGCCATACTGA	59.114	55.000	19.50	0.00	43.93	3.41
303	304	1.402456	CCGCGGTATAGCCATACTGAC	60.402	57.143	19.50	5.63	43.93	3.51
304	305	1.268625	CGCGGTATAGCCATACTGACA	59.731	52.381	14.43	0.00	43.93	3.58
305	306	2.287970	CGCGGTATAGCCATACTGACAA	60.288	50.000	14.43	0.00	43.93	3.18
306	307	3.724374	GCGGTATAGCCATACTGACAAA	58.276	45.455	14.43	0.00	43.93	2.83
307	308	4.124238	GCGGTATAGCCATACTGACAAAA	58.876	43.478	14.43	0.00	43.93	2.44
308	309	4.025145	GCGGTATAGCCATACTGACAAAAC	60.025	45.833	14.43	0.00	43.93	2.43
309	310	5.113383	CGGTATAGCCATACTGACAAAACA	58.887	41.667	5.26	0.00	43.93	2.83
310	311	5.583061	CGGTATAGCCATACTGACAAAACAA	59.417	40.000	5.26	0.00	43.93	2.83
311	312	6.260050	CGGTATAGCCATACTGACAAAACAAT	59.740	38.462	5.26	0.00	43.93	2.71
312	313	7.417612	GGTATAGCCATACTGACAAAACAATG	58.582	38.462	2.27	0.00	37.70	2.82
313	314	4.178545	AGCCATACTGACAAAACAATGC	57.821	40.909	0.00	0.00	0.00	3.56
314	315	2.916716	GCCATACTGACAAAACAATGCG	59.083	45.455	0.00	0.00	0.00	4.73
315	316	3.500982	CCATACTGACAAAACAATGCGG	58.499	45.455	0.00	0.00	0.00	5.69
316	317	2.697431	TACTGACAAAACAATGCGGC	57.303	45.000	0.00	0.00	0.00	6.53
317	318	0.743688	ACTGACAAAACAATGCGGCA	59.256	45.000	4.58	4.58	0.00	5.69
318	319	1.130955	CTGACAAAACAATGCGGCAC	58.869	50.000	4.03	0.00	0.00	5.01
319	320	0.743688	TGACAAAACAATGCGGCACT	59.256	45.000	4.03	0.00	0.00	4.40
320	321	1.268999	TGACAAAACAATGCGGCACTC	60.269	47.619	4.03	0.00	0.00	3.51
321	322	0.031994	ACAAAACAATGCGGCACTCC	59.968	50.000	4.03	0.00	0.00	3.85
333	334	3.625897	CACTCCGCCACCACCTCA	61.626	66.667	0.00	0.00	0.00	3.86
334	335	2.847234	ACTCCGCCACCACCTCAA	60.847	61.111	0.00	0.00	0.00	3.02
335	336	2.358737	CTCCGCCACCACCTCAAC	60.359	66.667	0.00	0.00	0.00	3.18
336	337	3.901797	CTCCGCCACCACCTCAACC	62.902	68.421	0.00	0.00	0.00	3.77
339	340	3.897122	GCCACCACCTCAACCCCA	61.897	66.667	0.00	0.00	0.00	4.96
340	341	2.115266	CCACCACCTCAACCCCAC	59.885	66.667	0.00	0.00	0.00	4.61
341	342	2.281484	CACCACCTCAACCCCACG	60.281	66.667	0.00	0.00	0.00	4.94
342	343	3.566210	ACCACCTCAACCCCACGG	61.566	66.667	0.00	0.00	0.00	4.94
346	347	4.047125	CCTCAACCCCACGGCCAT	62.047	66.667	2.24	0.00	0.00	4.40
347	348	2.751436	CTCAACCCCACGGCCATG	60.751	66.667	2.24	0.00	0.00	3.66
348	349	4.358841	TCAACCCCACGGCCATGG	62.359	66.667	12.02	12.02	39.71	3.66
354	355	4.181010	CCACGGCCATGGGAGGAG	62.181	72.222	10.92	0.00	35.95	3.69
355	356	3.083349	CACGGCCATGGGAGGAGA	61.083	66.667	15.13	0.00	0.00	3.71
356	357	3.083997	ACGGCCATGGGAGGAGAC	61.084	66.667	15.13	0.00	0.00	3.36
357	358	3.866582	CGGCCATGGGAGGAGACC	61.867	72.222	15.13	2.82	0.00	3.85
397	398	4.210304	GACGCCGCAATCGCACTC	62.210	66.667	0.00	0.00	38.40	3.51
400	401	3.869272	GCCGCAATCGCACTCCTG	61.869	66.667	0.00	0.00	38.40	3.86
401	402	3.197790	CCGCAATCGCACTCCTGG	61.198	66.667	0.00	0.00	38.40	4.45
402	403	3.197790	CGCAATCGCACTCCTGGG	61.198	66.667	0.00	0.00	38.40	4.45
403	404	3.512516	GCAATCGCACTCCTGGGC	61.513	66.667	0.00	0.00	38.36	5.36
404	405	2.046023	CAATCGCACTCCTGGGCA	60.046	61.111	0.00	0.00	0.00	5.36
405	406	2.110967	CAATCGCACTCCTGGGCAG	61.111	63.158	0.00	0.00	0.00	4.85
406	407	3.984193	AATCGCACTCCTGGGCAGC	62.984	63.158	0.00	0.00	0.00	5.25
410	411	3.957586	CACTCCTGGGCAGCACCA	61.958	66.667	0.00	0.00	42.05	4.17
411	412	3.958860	ACTCCTGGGCAGCACCAC	61.959	66.667	0.00	0.00	42.05	4.16
412	413	4.729918	CTCCTGGGCAGCACCACC	62.730	72.222	0.00	0.00	42.05	4.61
419	420	2.668212	GCAGCACCACCAGCGTTA	60.668	61.111	0.00	0.00	37.01	3.18
420	421	2.680913	GCAGCACCACCAGCGTTAG	61.681	63.158	0.00	0.00	37.01	2.34
421	422	2.034879	CAGCACCACCAGCGTTAGG	61.035	63.158	0.00	0.00	37.01	2.69
422	423	2.214216	AGCACCACCAGCGTTAGGA	61.214	57.895	0.00	0.00	37.01	2.94
423	424	1.741770	GCACCACCAGCGTTAGGAG	60.742	63.158	0.00	0.00	0.00	3.69
424	425	1.741770	CACCACCAGCGTTAGGAGC	60.742	63.158	0.00	0.00	0.00	4.70
425	426	2.214216	ACCACCAGCGTTAGGAGCA	61.214	57.895	0.00	0.00	37.01	4.26
426	427	1.448540	CCACCAGCGTTAGGAGCAG	60.449	63.158	0.00	0.00	37.01	4.24
436	437	3.134458	CGTTAGGAGCAGGAATCCATTC	58.866	50.000	0.61	0.00	39.47	2.67
464	465	4.293662	ACTAGAGGGCTCCAAAGAAAAG	57.706	45.455	0.00	0.00	0.00	2.27
560	562	2.547855	GGCAACACAGGAAATGGAAACC	60.548	50.000	0.00	0.00	0.00	3.27
561	563	2.547855	GCAACACAGGAAATGGAAACCC	60.548	50.000	0.00	0.00	0.00	4.11
563	565	1.144093	ACACAGGAAATGGAAACCCGA	59.856	47.619	0.00	0.00	0.00	5.14
564	566	1.539827	CACAGGAAATGGAAACCCGAC	59.460	52.381	0.00	0.00	0.00	4.79
566	568	1.539827	CAGGAAATGGAAACCCGACAC	59.460	52.381	0.00	0.00	0.00	3.67
567	569	1.144093	AGGAAATGGAAACCCGACACA	59.856	47.619	0.00	0.00	0.00	3.72
569	571	0.958822	AAATGGAAACCCGACACAGC	59.041	50.000	0.00	0.00	0.00	4.40
570	572	1.234615	AATGGAAACCCGACACAGCG	61.235	55.000	0.00	0.00	0.00	5.18
571	573	2.280592	GGAAACCCGACACAGCGT	60.281	61.111	0.00	0.00	0.00	5.07
596	598	0.882042	CCTTCCATCCGCTCCAATCG	60.882	60.000	0.00	0.00	0.00	3.34
627	629	2.102252	GTGGGCTCCAATTCAAACACAA	59.898	45.455	0.00	0.00	34.18	3.33
631	633	4.301628	GGCTCCAATTCAAACACAAGAAG	58.698	43.478	0.00	0.00	0.00	2.85
632	634	4.037923	GGCTCCAATTCAAACACAAGAAGA	59.962	41.667	0.00	0.00	0.00	2.87
634	636	5.689068	GCTCCAATTCAAACACAAGAAGAAG	59.311	40.000	0.00	0.00	0.00	2.85
635	637	6.147864	TCCAATTCAAACACAAGAAGAAGG	57.852	37.500	0.00	0.00	0.00	3.46
676	681	6.362820	CACGAGGTGAAGTAAAGTAAGAAGAC	59.637	42.308	0.00	0.00	35.23	3.01
964	984	1.201414	CCGAGGCGCCAAAAATAAACT	59.799	47.619	31.54	2.38	0.00	2.66
965	985	2.352323	CCGAGGCGCCAAAAATAAACTT	60.352	45.455	31.54	1.71	0.00	2.66
969	989	5.203060	AGGCGCCAAAAATAAACTTGTAA	57.797	34.783	31.54	0.00	0.00	2.41
1149	1172	0.874175	TCGGTAATTGATCGCTGGCG	60.874	55.000	8.80	8.80	41.35	5.69
1205	1228	1.733526	GTTCTTGTTGGGCGCACTT	59.266	52.632	12.74	0.00	0.00	3.16
1243	1266	5.708697	AGCATGTGTTCTGAATTCTGATTGA	59.291	36.000	14.89	0.00	0.00	2.57
1244	1267	5.798934	GCATGTGTTCTGAATTCTGATTGAC	59.201	40.000	14.89	11.10	0.00	3.18
1286	1309	2.825836	GCTGGAGCATTGACCGGG	60.826	66.667	6.32	0.00	41.59	5.73
1358	1381	1.965754	GAGCTGGACTGGGAGCGATT	61.966	60.000	0.00	0.00	40.34	3.34
1499	1522	9.053840	TGCTATCAGAATTCAGAATTTCAGATC	57.946	33.333	9.84	0.00	0.00	2.75
1509	1532	7.026631	TCAGAATTTCAGATCGTTTGTTGTT	57.973	32.000	0.00	0.00	0.00	2.83
1516	1539	4.275689	TCAGATCGTTTGTTGTTGCAATCT	59.724	37.500	0.59	0.00	0.00	2.40
1552	1575	4.963318	TCCCAAGATGATATCTGGTGAC	57.037	45.455	3.98	0.00	40.13	3.67
1554	1577	3.392285	CCCAAGATGATATCTGGTGACCA	59.608	47.826	3.40	3.40	40.13	4.02
1640	1675	5.618236	AGGTCGTTTTAGCTTTAGGTTCTT	58.382	37.500	0.00	0.00	0.00	2.52
1653	1688	6.590677	GCTTTAGGTTCTTCTAGTTAGTGTGG	59.409	42.308	0.00	0.00	0.00	4.17
1659	1694	7.282450	AGGTTCTTCTAGTTAGTGTGGTTTTTG	59.718	37.037	0.00	0.00	0.00	2.44
1660	1695	6.613755	TCTTCTAGTTAGTGTGGTTTTTGC	57.386	37.500	0.00	0.00	0.00	3.68
1668	1703	7.480810	AGTTAGTGTGGTTTTTGCTCTAAAAG	58.519	34.615	0.00	0.00	39.29	2.27
1674	1709	6.040391	TGTGGTTTTTGCTCTAAAAGTGCTAT	59.960	34.615	3.04	0.00	39.29	2.97
1692	1727	7.743104	AGTGCTATAGTTATATTGATTTGCGC	58.257	34.615	0.00	0.00	0.00	6.09
1709	1744	4.153958	TGCGCGAAGTTTTATGTTGATT	57.846	36.364	12.10	0.00	0.00	2.57
1717	1752	7.253950	GCGAAGTTTTATGTTGATTTGTTGTGT	60.254	33.333	0.00	0.00	0.00	3.72
1726	1761	6.867550	TGTTGATTTGTTGTGTCATTTGGTA	58.132	32.000	0.00	0.00	0.00	3.25
1727	1762	6.977502	TGTTGATTTGTTGTGTCATTTGGTAG	59.022	34.615	0.00	0.00	0.00	3.18
1737	1775	3.751175	TGTCATTTGGTAGAGAAAAGGCG	59.249	43.478	0.00	0.00	0.00	5.52
1811	2090	4.501714	GCGCCACATACGGTCGGA	62.502	66.667	0.00	0.00	0.00	4.55
1832	2111	5.758924	GGATTTTCCTCCGATTATTTTCCG	58.241	41.667	0.00	0.00	32.53	4.30
1856	2140	9.878599	CCGGACATATTTTGTTACTCATTATTC	57.121	33.333	0.00	0.00	39.18	1.75
2456	2742	4.442706	CACTGGAGAAATTACCGCACTAT	58.557	43.478	0.00	0.00	0.00	2.12
2548	2840	8.211629	ACAGGTACAATTATCATAAGAACCTCC	58.788	37.037	0.00	0.00	32.61	4.30
2578	2872	5.104982	AGTTTGCCCTTCATTTTGTTCAAGA	60.105	36.000	0.00	0.00	0.00	3.02
2630	2931	4.391830	ACGCACTGTCGATTTCATTACAAT	59.608	37.500	0.00	0.00	0.00	2.71
2648	2949	2.364002	CAATGGAAACGGGGAACAAACT	59.636	45.455	0.00	0.00	0.00	2.66
2649	2950	2.146920	TGGAAACGGGGAACAAACTT	57.853	45.000	0.00	0.00	0.00	2.66
2650	2951	2.025898	TGGAAACGGGGAACAAACTTC	58.974	47.619	0.00	0.00	0.00	3.01
2651	2952	2.025898	GGAAACGGGGAACAAACTTCA	58.974	47.619	0.00	0.00	0.00	3.02
2653	2954	3.822167	GGAAACGGGGAACAAACTTCATA	59.178	43.478	0.00	0.00	0.00	2.15
2798	3103	9.265901	CCTAAATGGTTGTTAGATAGATCACTG	57.734	37.037	0.00	0.00	31.37	3.66
2825	3189	4.399618	TGACACTCCATAGCTGAGTACTTC	59.600	45.833	4.98	3.88	41.02	3.01
2879	3243	0.390492	TGTGCTGGAGATCCATAGCG	59.610	55.000	1.15	0.00	46.46	4.26
2895	3259	0.330604	AGCGGAGTACCTACCAGTCA	59.669	55.000	0.00	0.00	0.00	3.41
2930	3294	3.347216	TGCTTCTATTTTCCAGCTGGTC	58.653	45.455	31.58	9.72	36.34	4.02
2931	3295	3.244875	TGCTTCTATTTTCCAGCTGGTCA	60.245	43.478	31.58	17.36	36.34	4.02
3010	3374	4.216687	AGGTTCAGAGAGTCTTCTGTAACG	59.783	45.833	15.05	0.00	43.96	3.18
3020	3384	5.855045	AGTCTTCTGTAACGAAATTCACCT	58.145	37.500	0.00	0.00	0.00	4.00
3021	3385	6.989659	AGTCTTCTGTAACGAAATTCACCTA	58.010	36.000	0.00	0.00	0.00	3.08
3022	3386	7.612677	AGTCTTCTGTAACGAAATTCACCTAT	58.387	34.615	0.00	0.00	0.00	2.57
3023	3387	8.746530	AGTCTTCTGTAACGAAATTCACCTATA	58.253	33.333	0.00	0.00	0.00	1.31
3024	3388	9.021863	GTCTTCTGTAACGAAATTCACCTATAG	57.978	37.037	0.00	0.00	0.00	1.31
3025	3389	8.746530	TCTTCTGTAACGAAATTCACCTATAGT	58.253	33.333	0.00	0.00	0.00	2.12
3027	3391	9.793252	TTCTGTAACGAAATTCACCTATAGTAC	57.207	33.333	0.00	0.00	0.00	2.73
3028	3392	9.182214	TCTGTAACGAAATTCACCTATAGTACT	57.818	33.333	0.00	0.00	0.00	2.73
3029	3393	9.448294	CTGTAACGAAATTCACCTATAGTACTC	57.552	37.037	0.00	0.00	0.00	2.59
3030	3394	9.182214	TGTAACGAAATTCACCTATAGTACTCT	57.818	33.333	0.00	0.00	0.00	3.24
3033	3397	9.939802	AACGAAATTCACCTATAGTACTCTTTT	57.060	29.630	0.00	0.00	0.00	2.27
3034	3398	9.939802	ACGAAATTCACCTATAGTACTCTTTTT	57.060	29.630	0.00	0.00	0.00	1.94
3085	3449	4.714632	TGAAAACTCACCTAGGACCAAAG	58.285	43.478	17.98	7.37	0.00	2.77
3093	3457	1.810755	CCTAGGACCAAAGCGTTTTCC	59.189	52.381	1.05	2.48	0.00	3.13
3109	3473	5.679906	CGTTTTCCTCACTGTGACATTAAG	58.320	41.667	6.36	0.00	0.00	1.85
3112	3476	5.738619	TTCCTCACTGTGACATTAAGCTA	57.261	39.130	6.36	0.00	0.00	3.32
3310	3695	7.337689	TCCTTTTCCATCTGAATAGTGTGATTG	59.662	37.037	0.00	0.00	32.09	2.67
3363	3748	2.180276	GGATATGGTAGCCGGTGAGAT	58.820	52.381	1.90	0.00	0.00	2.75
3466	3851	1.194547	GTGTGTCGGCAACATGTGTAG	59.805	52.381	0.00	0.00	40.80	2.74
3515	3900	1.359474	TGAGTTCTCTGCCCTAGGAGT	59.641	52.381	11.48	0.00	0.00	3.85
3516	3901	2.225394	TGAGTTCTCTGCCCTAGGAGTT	60.225	50.000	11.48	0.00	0.00	3.01
3517	3902	3.011369	TGAGTTCTCTGCCCTAGGAGTTA	59.989	47.826	11.48	0.00	0.00	2.24
3558	3943	6.926272	GTCTGCTCCTATACAATGTAGAAAGG	59.074	42.308	11.04	11.04	0.00	3.11
3559	3944	5.611374	TGCTCCTATACAATGTAGAAAGGC	58.389	41.667	11.99	8.23	0.00	4.35
3560	3945	5.130311	TGCTCCTATACAATGTAGAAAGGCA	59.870	40.000	11.99	10.14	0.00	4.75
3561	3946	5.698545	GCTCCTATACAATGTAGAAAGGCAG	59.301	44.000	11.99	11.20	0.00	4.85
3562	3947	6.174720	TCCTATACAATGTAGAAAGGCAGG	57.825	41.667	11.99	0.07	0.00	4.85
3563	3948	5.071788	TCCTATACAATGTAGAAAGGCAGGG	59.928	44.000	11.99	0.00	0.00	4.45
3564	3949	2.514458	ACAATGTAGAAAGGCAGGGG	57.486	50.000	0.00	0.00	0.00	4.79
3774	7104	6.712095	TGGTTAATGCTGATGGATGTATCTTC	59.288	38.462	0.00	0.00	0.00	2.87
3779	7119	5.371526	TGCTGATGGATGTATCTTCTTTCC	58.628	41.667	0.00	0.00	0.00	3.13
3781	7121	5.310409	TGATGGATGTATCTTCTTTCCCC	57.690	43.478	0.00	0.00	0.00	4.81
3822	7162	4.541779	GATGTATCTCTGTTGCGTCCTAG	58.458	47.826	0.00	0.00	0.00	3.02
3823	7163	3.353557	TGTATCTCTGTTGCGTCCTAGT	58.646	45.455	0.00	0.00	0.00	2.57
3824	7164	4.520179	TGTATCTCTGTTGCGTCCTAGTA	58.480	43.478	0.00	0.00	0.00	1.82
3852	7193	7.984422	ATGTGAATGAAATGAGTTCTGTACA	57.016	32.000	0.00	0.00	37.13	2.90
3985	7326	7.383156	AAAGATGAACCCCCTATTCGTAATA	57.617	36.000	0.00	0.00	0.00	0.98
4067	7409	1.270625	CCTCCCTTGTGTTGCTAACGA	60.271	52.381	0.00	0.00	0.00	3.85
4135	7477	4.585879	TCAAACCTACCTACTTTCATGGC	58.414	43.478	0.00	0.00	0.00	4.40
4165	7507	7.752638	ACTTGGGTTTATGTTCTAGTAACCTT	58.247	34.615	0.00	0.00	38.59	3.50
4215	7557	4.773149	AGACACCTTTCCGTAAGATCTTCT	59.227	41.667	12.24	0.00	43.02	2.85
4265	7607	7.743104	AGAAGTTAATTGTATCGCAAACTCTG	58.257	34.615	0.00	0.00	40.91	3.35
4295	7637	7.210873	ACATTTAGTTTTCCCGCTATCTAGAG	58.789	38.462	0.00	0.00	0.00	2.43
4337	7679	4.827284	TCATTTCAGAAAAAGGAGGACACC	59.173	41.667	0.00	0.00	0.00	4.16
4338	7680	2.543777	TCAGAAAAAGGAGGACACCG	57.456	50.000	0.00	0.00	34.73	4.94
4343	7685	1.977056	AAAAGGAGGACACCGAAACC	58.023	50.000	0.00	0.00	34.73	3.27
4344	7686	0.250166	AAAGGAGGACACCGAAACCG	60.250	55.000	0.00	0.00	34.73	4.44
4394	7738	4.024893	GCCTGATGATGTTATGGTGTTACG	60.025	45.833	0.00	0.00	0.00	3.18
4400	7744	4.390603	TGATGTTATGGTGTTACGCAGTTC	59.609	41.667	0.00	0.00	37.78	3.01
4430	7779	9.709495	TTTTGTAAATGAGGGATCAAAGATTTG	57.291	29.630	0.00	0.00	39.48	2.32
4439	7788	6.985225	AGGGATCAAAGATTTGGAATAGGAA	58.015	36.000	5.52	0.00	38.66	3.36
4441	7790	6.836007	GGGATCAAAGATTTGGAATAGGAAGT	59.164	38.462	5.52	0.00	38.66	3.01
4459	7808	4.282496	GAAGTGAGGAGAGGGTGAATAGA	58.718	47.826	0.00	0.00	0.00	1.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.639761	GCTTAAGTCTAATCTGAGTTGGGTATA	58.360	37.037	4.02	0.00	32.52	1.47
1	2	7.345914	AGCTTAAGTCTAATCTGAGTTGGGTAT	59.654	37.037	4.02	0.00	32.52	2.73
2	3	6.668283	AGCTTAAGTCTAATCTGAGTTGGGTA	59.332	38.462	4.02	0.00	32.52	3.69
3	4	5.485708	AGCTTAAGTCTAATCTGAGTTGGGT	59.514	40.000	4.02	0.00	32.52	4.51
4	5	5.983540	AGCTTAAGTCTAATCTGAGTTGGG	58.016	41.667	4.02	0.00	32.52	4.12
5	6	7.604164	TGAAAGCTTAAGTCTAATCTGAGTTGG	59.396	37.037	0.00	0.00	32.52	3.77
6	7	8.439286	GTGAAAGCTTAAGTCTAATCTGAGTTG	58.561	37.037	0.00	0.00	32.52	3.16
7	8	7.604545	GGTGAAAGCTTAAGTCTAATCTGAGTT	59.395	37.037	0.00	0.00	34.41	3.01
8	9	7.100409	GGTGAAAGCTTAAGTCTAATCTGAGT	58.900	38.462	0.00	0.00	0.00	3.41
9	10	6.536941	GGGTGAAAGCTTAAGTCTAATCTGAG	59.463	42.308	0.00	0.00	0.00	3.35
10	11	6.407202	GGGTGAAAGCTTAAGTCTAATCTGA	58.593	40.000	0.00	0.00	0.00	3.27
11	12	5.586643	GGGGTGAAAGCTTAAGTCTAATCTG	59.413	44.000	0.00	0.00	0.00	2.90
12	13	5.627040	CGGGGTGAAAGCTTAAGTCTAATCT	60.627	44.000	0.00	0.00	0.00	2.40
13	14	4.571176	CGGGGTGAAAGCTTAAGTCTAATC	59.429	45.833	0.00	5.36	0.00	1.75
14	15	4.514401	CGGGGTGAAAGCTTAAGTCTAAT	58.486	43.478	0.00	0.00	0.00	1.73
15	16	3.307199	CCGGGGTGAAAGCTTAAGTCTAA	60.307	47.826	0.00	0.00	0.00	2.10
16	17	2.235402	CCGGGGTGAAAGCTTAAGTCTA	59.765	50.000	0.00	0.00	0.00	2.59
17	18	1.003233	CCGGGGTGAAAGCTTAAGTCT	59.997	52.381	0.00	0.00	0.00	3.24
18	19	1.002773	TCCGGGGTGAAAGCTTAAGTC	59.997	52.381	0.00	0.00	0.00	3.01
19	20	1.003233	CTCCGGGGTGAAAGCTTAAGT	59.997	52.381	0.00	0.00	0.00	2.24
20	21	1.739067	CTCCGGGGTGAAAGCTTAAG	58.261	55.000	0.00	0.00	0.00	1.85
21	22	0.322187	GCTCCGGGGTGAAAGCTTAA	60.322	55.000	1.62	0.00	0.00	1.85
22	23	1.198759	AGCTCCGGGGTGAAAGCTTA	61.199	55.000	1.62	0.00	42.23	3.09
23	24	2.034221	GCTCCGGGGTGAAAGCTT	59.966	61.111	1.62	0.00	0.00	3.74
24	25	2.930562	AGCTCCGGGGTGAAAGCT	60.931	61.111	1.62	5.00	40.18	3.74
25	26	2.436824	GAGCTCCGGGGTGAAAGC	60.437	66.667	1.62	2.10	34.95	3.51
26	27	0.674895	CTTGAGCTCCGGGGTGAAAG	60.675	60.000	12.15	0.00	0.00	2.62
27	28	1.125093	TCTTGAGCTCCGGGGTGAAA	61.125	55.000	12.15	0.00	0.00	2.69
28	29	1.535444	TCTTGAGCTCCGGGGTGAA	60.535	57.895	12.15	0.00	0.00	3.18
29	30	2.119611	TCTTGAGCTCCGGGGTGA	59.880	61.111	12.15	0.00	0.00	4.02
30	31	2.266055	GTCTTGAGCTCCGGGGTG	59.734	66.667	12.15	0.00	0.00	4.61
31	32	3.003763	GGTCTTGAGCTCCGGGGT	61.004	66.667	12.15	0.00	0.00	4.95
32	33	3.003173	TGGTCTTGAGCTCCGGGG	61.003	66.667	12.15	0.00	0.00	5.73
33	34	2.581354	CTGGTCTTGAGCTCCGGG	59.419	66.667	12.15	1.15	0.00	5.73
34	35	2.286523	ACCTGGTCTTGAGCTCCGG	61.287	63.158	12.15	0.00	0.00	5.14
35	36	1.079543	CACCTGGTCTTGAGCTCCG	60.080	63.158	12.15	2.20	0.00	4.63
36	37	1.376553	GCACCTGGTCTTGAGCTCC	60.377	63.158	12.15	0.00	0.00	4.70
37	38	0.390998	GAGCACCTGGTCTTGAGCTC	60.391	60.000	17.09	17.09	41.21	4.09
38	39	1.676384	GAGCACCTGGTCTTGAGCT	59.324	57.895	8.20	8.20	39.31	4.09
39	40	1.739562	CGAGCACCTGGTCTTGAGC	60.740	63.158	0.00	0.00	40.17	4.26
40	41	0.108898	CTCGAGCACCTGGTCTTGAG	60.109	60.000	19.89	19.89	40.17	3.02
41	42	0.827925	ACTCGAGCACCTGGTCTTGA	60.828	55.000	13.61	6.25	40.17	3.02
42	43	0.888619	TACTCGAGCACCTGGTCTTG	59.111	55.000	13.61	1.90	40.17	3.02
43	44	1.178276	CTACTCGAGCACCTGGTCTT	58.822	55.000	13.61	0.00	40.17	3.01
44	45	2.875188	CTACTCGAGCACCTGGTCT	58.125	57.895	13.61	0.00	40.17	3.85
57	58	1.813786	ACTTCGAGAGTGGTGCTACTC	59.186	52.381	7.49	7.49	45.83	2.59
58	59	1.813786	GACTTCGAGAGTGGTGCTACT	59.186	52.381	5.20	0.00	39.19	2.57
59	60	1.540267	TGACTTCGAGAGTGGTGCTAC	59.460	52.381	5.20	0.00	39.19	3.58
60	61	1.540267	GTGACTTCGAGAGTGGTGCTA	59.460	52.381	5.20	0.00	39.19	3.49
61	62	0.315568	GTGACTTCGAGAGTGGTGCT	59.684	55.000	5.20	0.00	39.19	4.40
62	63	0.315568	AGTGACTTCGAGAGTGGTGC	59.684	55.000	5.20	0.00	39.19	5.01
63	64	3.917329	TTAGTGACTTCGAGAGTGGTG	57.083	47.619	0.00	0.00	39.19	4.17
64	65	3.827302	ACATTAGTGACTTCGAGAGTGGT	59.173	43.478	0.00	0.00	39.19	4.16
65	66	4.442375	ACATTAGTGACTTCGAGAGTGG	57.558	45.455	0.00	0.00	39.19	4.00
78	79	3.241493	TGGCGAACCCACATTAGTG	57.759	52.632	0.00	0.00	45.47	2.74
89	90	2.215196	TGAGTAAAAGTGGTGGCGAAC	58.785	47.619	0.00	0.00	0.00	3.95
90	91	2.623878	TGAGTAAAAGTGGTGGCGAA	57.376	45.000	0.00	0.00	0.00	4.70
91	92	2.623878	TTGAGTAAAAGTGGTGGCGA	57.376	45.000	0.00	0.00	0.00	5.54
92	93	3.915437	AATTGAGTAAAAGTGGTGGCG	57.085	42.857	0.00	0.00	0.00	5.69
93	94	5.392057	GCTCTAATTGAGTAAAAGTGGTGGC	60.392	44.000	6.72	0.00	44.41	5.01
94	95	5.705441	TGCTCTAATTGAGTAAAAGTGGTGG	59.295	40.000	6.72	0.00	44.41	4.61
95	96	6.621596	GCTGCTCTAATTGAGTAAAAGTGGTG	60.622	42.308	0.00	0.00	44.41	4.17
96	97	5.412904	GCTGCTCTAATTGAGTAAAAGTGGT	59.587	40.000	0.00	0.00	44.41	4.16
97	98	5.645497	AGCTGCTCTAATTGAGTAAAAGTGG	59.355	40.000	0.00	0.00	44.41	4.00
98	99	6.734104	AGCTGCTCTAATTGAGTAAAAGTG	57.266	37.500	0.00	0.00	44.41	3.16
101	102	8.993121	GCATATAGCTGCTCTAATTGAGTAAAA	58.007	33.333	4.91	0.00	41.67	1.52
102	103	7.329471	CGCATATAGCTGCTCTAATTGAGTAAA	59.671	37.037	4.91	0.00	42.26	2.01
103	104	6.808704	CGCATATAGCTGCTCTAATTGAGTAA	59.191	38.462	4.91	0.00	42.26	2.24
104	105	6.151144	TCGCATATAGCTGCTCTAATTGAGTA	59.849	38.462	4.91	2.55	42.26	2.59
105	106	5.047731	TCGCATATAGCTGCTCTAATTGAGT	60.048	40.000	4.91	0.00	42.26	3.41
106	107	5.405797	TCGCATATAGCTGCTCTAATTGAG	58.594	41.667	4.91	0.00	42.76	3.02
107	108	5.391312	TCGCATATAGCTGCTCTAATTGA	57.609	39.130	4.91	0.00	42.61	2.57
108	109	5.809051	TCATCGCATATAGCTGCTCTAATTG	59.191	40.000	4.91	0.00	42.61	2.32
109	110	5.970592	TCATCGCATATAGCTGCTCTAATT	58.029	37.500	4.91	0.00	42.61	1.40
110	111	5.588958	TCATCGCATATAGCTGCTCTAAT	57.411	39.130	4.91	0.00	42.61	1.73
111	112	4.676459	GCTCATCGCATATAGCTGCTCTAA	60.676	45.833	4.91	0.00	42.61	2.10
112	113	3.181492	GCTCATCGCATATAGCTGCTCTA	60.181	47.826	4.91	0.20	42.61	2.43
113	114	2.417107	GCTCATCGCATATAGCTGCTCT	60.417	50.000	4.91	0.00	42.61	4.09
114	115	1.925847	GCTCATCGCATATAGCTGCTC	59.074	52.381	4.91	0.00	42.61	4.26
115	116	1.549620	AGCTCATCGCATATAGCTGCT	59.450	47.619	7.57	7.57	43.46	4.24
116	117	2.007360	AGCTCATCGCATATAGCTGC	57.993	50.000	0.00	0.00	43.46	5.25
118	119	1.274447	TGCAGCTCATCGCATATAGCT	59.726	47.619	0.00	0.00	45.94	3.32
119	120	1.392853	GTGCAGCTCATCGCATATAGC	59.607	52.381	0.00	0.00	40.89	2.97
120	121	2.680577	TGTGCAGCTCATCGCATATAG	58.319	47.619	0.00	0.00	40.89	1.31
121	122	2.802247	GTTGTGCAGCTCATCGCATATA	59.198	45.455	0.00	0.00	40.89	0.86
122	123	1.600957	GTTGTGCAGCTCATCGCATAT	59.399	47.619	0.00	0.00	40.89	1.78
123	124	1.009078	GTTGTGCAGCTCATCGCATA	58.991	50.000	0.00	0.00	40.89	3.14
124	125	1.651240	GGTTGTGCAGCTCATCGCAT	61.651	55.000	0.00	0.00	40.89	4.73
125	126	2.327343	GGTTGTGCAGCTCATCGCA	61.327	57.895	0.00	0.00	42.61	5.10
126	127	1.651240	ATGGTTGTGCAGCTCATCGC	61.651	55.000	0.00	0.00	39.57	4.58
127	128	0.376152	GATGGTTGTGCAGCTCATCG	59.624	55.000	0.00	0.00	0.00	3.84
128	129	0.737219	GGATGGTTGTGCAGCTCATC	59.263	55.000	0.00	9.46	34.98	2.92
129	130	0.682209	GGGATGGTTGTGCAGCTCAT	60.682	55.000	0.00	0.00	0.00	2.90
130	131	1.303561	GGGATGGTTGTGCAGCTCA	60.304	57.895	0.00	0.00	0.00	4.26
131	132	0.610232	AAGGGATGGTTGTGCAGCTC	60.610	55.000	0.00	0.00	0.00	4.09
132	133	0.178953	AAAGGGATGGTTGTGCAGCT	60.179	50.000	0.00	0.00	0.00	4.24
133	134	0.037975	CAAAGGGATGGTTGTGCAGC	60.038	55.000	0.00	0.00	0.00	5.25
134	135	0.037975	GCAAAGGGATGGTTGTGCAG	60.038	55.000	0.00	0.00	32.29	4.41
135	136	1.804396	CGCAAAGGGATGGTTGTGCA	61.804	55.000	0.00	0.00	32.29	4.57
136	137	1.080569	CGCAAAGGGATGGTTGTGC	60.081	57.895	0.00	0.00	0.00	4.57
137	138	0.240945	GACGCAAAGGGATGGTTGTG	59.759	55.000	0.00	0.00	0.00	3.33
138	139	0.179004	TGACGCAAAGGGATGGTTGT	60.179	50.000	0.00	0.00	0.00	3.32
139	140	0.958091	TTGACGCAAAGGGATGGTTG	59.042	50.000	0.00	0.00	0.00	3.77
140	141	1.247567	CTTGACGCAAAGGGATGGTT	58.752	50.000	0.00	0.00	0.00	3.67
141	142	0.110486	ACTTGACGCAAAGGGATGGT	59.890	50.000	3.08	0.00	0.00	3.55
142	143	0.804989	GACTTGACGCAAAGGGATGG	59.195	55.000	3.08	0.00	0.00	3.51
143	144	0.443869	CGACTTGACGCAAAGGGATG	59.556	55.000	3.08	0.00	0.00	3.51
144	145	0.673644	CCGACTTGACGCAAAGGGAT	60.674	55.000	3.08	0.00	0.00	3.85
145	146	1.301401	CCGACTTGACGCAAAGGGA	60.301	57.895	3.08	0.00	0.00	4.20
146	147	1.566018	GACCGACTTGACGCAAAGGG	61.566	60.000	3.08	3.30	0.00	3.95
147	148	1.860078	GACCGACTTGACGCAAAGG	59.140	57.895	3.08	5.25	0.00	3.11
148	149	1.213094	ACGACCGACTTGACGCAAAG	61.213	55.000	0.00	0.00	0.00	2.77
149	150	1.210545	GACGACCGACTTGACGCAAA	61.211	55.000	0.00	0.00	0.00	3.68
150	151	1.659335	GACGACCGACTTGACGCAA	60.659	57.895	0.00	0.00	0.00	4.85
151	152	2.050714	GACGACCGACTTGACGCA	60.051	61.111	0.00	0.00	0.00	5.24
152	153	2.804090	GGACGACCGACTTGACGC	60.804	66.667	0.00	0.00	0.00	5.19
153	154	0.448990	TATGGACGACCGACTTGACG	59.551	55.000	0.00	0.00	39.42	4.35
154	155	2.642139	TTATGGACGACCGACTTGAC	57.358	50.000	0.00	0.00	39.42	3.18
155	156	3.880047	AATTATGGACGACCGACTTGA	57.120	42.857	0.00	0.00	39.42	3.02
156	157	4.865925	TGTAAATTATGGACGACCGACTTG	59.134	41.667	0.00	0.00	39.42	3.16
157	158	5.075858	TGTAAATTATGGACGACCGACTT	57.924	39.130	0.00	0.00	39.42	3.01
158	159	4.724074	TGTAAATTATGGACGACCGACT	57.276	40.909	0.00	0.00	39.42	4.18
159	160	5.978934	AATGTAAATTATGGACGACCGAC	57.021	39.130	0.00	0.00	39.42	4.79
160	161	6.342906	AGAAATGTAAATTATGGACGACCGA	58.657	36.000	0.00	0.00	39.42	4.69
161	162	6.598753	AGAAATGTAAATTATGGACGACCG	57.401	37.500	0.00	0.00	39.42	4.79
162	163	7.282450	AGGAAGAAATGTAAATTATGGACGACC	59.718	37.037	0.00	0.00	0.00	4.79
163	164	8.209917	AGGAAGAAATGTAAATTATGGACGAC	57.790	34.615	0.00	0.00	0.00	4.34
164	165	7.223971	CGAGGAAGAAATGTAAATTATGGACGA	59.776	37.037	0.00	0.00	0.00	4.20
165	166	7.223971	TCGAGGAAGAAATGTAAATTATGGACG	59.776	37.037	0.00	0.00	0.00	4.79
166	167	8.433421	TCGAGGAAGAAATGTAAATTATGGAC	57.567	34.615	0.00	0.00	0.00	4.02
167	168	9.109393	CTTCGAGGAAGAAATGTAAATTATGGA	57.891	33.333	0.00	0.00	41.71	3.41
168	169	8.893727	ACTTCGAGGAAGAAATGTAAATTATGG	58.106	33.333	12.00	0.00	41.71	2.74
169	170	9.922305	GACTTCGAGGAAGAAATGTAAATTATG	57.078	33.333	12.00	0.00	41.71	1.90
170	171	9.667107	TGACTTCGAGGAAGAAATGTAAATTAT	57.333	29.630	12.00	0.00	41.71	1.28
171	172	9.496873	TTGACTTCGAGGAAGAAATGTAAATTA	57.503	29.630	12.00	0.00	41.71	1.40
172	173	7.979444	TGACTTCGAGGAAGAAATGTAAATT	57.021	32.000	12.00	0.00	41.71	1.82
173	174	7.094762	GGTTGACTTCGAGGAAGAAATGTAAAT	60.095	37.037	12.00	0.00	41.71	1.40
174	175	6.204108	GGTTGACTTCGAGGAAGAAATGTAAA	59.796	38.462	12.00	0.00	41.71	2.01
175	176	5.699458	GGTTGACTTCGAGGAAGAAATGTAA	59.301	40.000	12.00	0.00	41.71	2.41
176	177	5.221561	TGGTTGACTTCGAGGAAGAAATGTA	60.222	40.000	12.00	0.00	41.71	2.29
177	178	4.065789	GGTTGACTTCGAGGAAGAAATGT	58.934	43.478	12.00	0.00	41.71	2.71
178	179	4.065088	TGGTTGACTTCGAGGAAGAAATG	58.935	43.478	12.00	0.00	41.71	2.32
179	180	4.065789	GTGGTTGACTTCGAGGAAGAAAT	58.934	43.478	12.00	0.00	41.71	2.17
180	181	3.463944	GTGGTTGACTTCGAGGAAGAAA	58.536	45.455	12.00	3.86	41.71	2.52
181	182	2.224209	GGTGGTTGACTTCGAGGAAGAA	60.224	50.000	12.00	0.00	41.71	2.52
182	183	1.343465	GGTGGTTGACTTCGAGGAAGA	59.657	52.381	12.00	0.00	41.71	2.87
183	184	1.797025	GGTGGTTGACTTCGAGGAAG	58.203	55.000	0.00	3.92	44.37	3.46
184	185	0.032952	CGGTGGTTGACTTCGAGGAA	59.967	55.000	0.00	0.00	0.00	3.36
185	186	1.663739	CGGTGGTTGACTTCGAGGA	59.336	57.895	0.00	0.00	0.00	3.71
186	187	1.374252	CCGGTGGTTGACTTCGAGG	60.374	63.158	0.00	0.00	0.00	4.63
187	188	0.246635	ATCCGGTGGTTGACTTCGAG	59.753	55.000	0.00	0.00	0.00	4.04
188	189	0.245539	GATCCGGTGGTTGACTTCGA	59.754	55.000	0.00	0.00	0.00	3.71
189	190	0.246635	AGATCCGGTGGTTGACTTCG	59.753	55.000	0.00	0.00	0.00	3.79
190	191	3.821421	ATAGATCCGGTGGTTGACTTC	57.179	47.619	0.00	0.00	0.00	3.01
191	192	4.543689	TCTATAGATCCGGTGGTTGACTT	58.456	43.478	0.00	0.00	0.00	3.01
192	193	4.180377	TCTATAGATCCGGTGGTTGACT	57.820	45.455	0.00	0.00	0.00	3.41
193	194	4.931661	TTCTATAGATCCGGTGGTTGAC	57.068	45.455	2.58	0.00	0.00	3.18
194	195	5.600898	TCATTTCTATAGATCCGGTGGTTGA	59.399	40.000	2.58	0.00	0.00	3.18
195	196	5.853936	TCATTTCTATAGATCCGGTGGTTG	58.146	41.667	2.58	0.00	0.00	3.77
196	197	6.494666	TTCATTTCTATAGATCCGGTGGTT	57.505	37.500	2.58	0.00	0.00	3.67
197	198	6.099845	AGTTTCATTTCTATAGATCCGGTGGT	59.900	38.462	2.58	0.00	0.00	4.16
198	199	6.425114	CAGTTTCATTTCTATAGATCCGGTGG	59.575	42.308	2.58	0.00	0.00	4.61
199	200	6.986817	ACAGTTTCATTTCTATAGATCCGGTG	59.013	38.462	2.58	0.00	0.00	4.94
200	201	7.125792	ACAGTTTCATTTCTATAGATCCGGT	57.874	36.000	2.58	0.00	0.00	5.28
201	202	6.647067	GGACAGTTTCATTTCTATAGATCCGG	59.353	42.308	2.58	0.00	0.00	5.14
202	203	7.437748	AGGACAGTTTCATTTCTATAGATCCG	58.562	38.462	2.58	0.00	0.00	4.18
208	209	9.886132	GGTCTTAAGGACAGTTTCATTTCTATA	57.114	33.333	1.85	0.00	46.16	1.31
209	210	8.606830	AGGTCTTAAGGACAGTTTCATTTCTAT	58.393	33.333	1.85	0.00	46.16	1.98
210	211	7.974504	AGGTCTTAAGGACAGTTTCATTTCTA	58.025	34.615	1.85	0.00	46.16	2.10
211	212	6.842676	AGGTCTTAAGGACAGTTTCATTTCT	58.157	36.000	1.85	0.00	46.16	2.52
212	213	7.511959	AAGGTCTTAAGGACAGTTTCATTTC	57.488	36.000	1.85	0.00	46.16	2.17
213	214	7.255139	CGAAAGGTCTTAAGGACAGTTTCATTT	60.255	37.037	18.75	0.00	46.16	2.32
214	215	6.204882	CGAAAGGTCTTAAGGACAGTTTCATT	59.795	38.462	18.75	0.00	46.16	2.57
215	216	5.701290	CGAAAGGTCTTAAGGACAGTTTCAT	59.299	40.000	18.75	0.00	46.16	2.57
216	217	5.054477	CGAAAGGTCTTAAGGACAGTTTCA	58.946	41.667	18.75	0.00	46.16	2.69
217	218	5.593183	CGAAAGGTCTTAAGGACAGTTTC	57.407	43.478	1.85	10.62	46.16	2.78
234	235	1.135803	CGTTACAATGGCCACCGAAAG	60.136	52.381	8.16	0.00	0.00	2.62
235	236	0.875728	CGTTACAATGGCCACCGAAA	59.124	50.000	8.16	0.00	0.00	3.46
236	237	0.035036	TCGTTACAATGGCCACCGAA	59.965	50.000	8.16	0.00	0.00	4.30
237	238	0.390603	CTCGTTACAATGGCCACCGA	60.391	55.000	8.16	8.40	0.00	4.69
238	239	1.366111	CCTCGTTACAATGGCCACCG	61.366	60.000	8.16	4.17	0.00	4.94
239	240	1.654023	GCCTCGTTACAATGGCCACC	61.654	60.000	8.16	0.00	39.49	4.61
240	241	1.800681	GCCTCGTTACAATGGCCAC	59.199	57.895	8.16	0.00	39.49	5.01
241	242	4.312052	GCCTCGTTACAATGGCCA	57.688	55.556	8.56	8.56	39.49	5.36
243	244	1.448893	TCGGCCTCGTTACAATGGC	60.449	57.895	0.00	0.00	44.22	4.40
244	245	0.390603	TGTCGGCCTCGTTACAATGG	60.391	55.000	0.00	0.00	37.69	3.16
245	246	0.719465	GTGTCGGCCTCGTTACAATG	59.281	55.000	0.00	0.00	37.69	2.82
246	247	0.606604	AGTGTCGGCCTCGTTACAAT	59.393	50.000	0.00	0.00	37.69	2.71
247	248	0.319211	CAGTGTCGGCCTCGTTACAA	60.319	55.000	0.00	0.00	37.69	2.41
248	249	1.287815	CAGTGTCGGCCTCGTTACA	59.712	57.895	0.00	0.00	37.69	2.41
249	250	2.092882	GCAGTGTCGGCCTCGTTAC	61.093	63.158	0.00	0.00	37.69	2.50
250	251	0.961857	TAGCAGTGTCGGCCTCGTTA	60.962	55.000	0.00	0.00	37.69	3.18
251	252	2.214181	CTAGCAGTGTCGGCCTCGTT	62.214	60.000	0.00	0.00	37.69	3.85
252	253	2.675423	TAGCAGTGTCGGCCTCGT	60.675	61.111	0.00	0.00	37.69	4.18
253	254	2.103143	CTAGCAGTGTCGGCCTCG	59.897	66.667	0.00	0.00	37.82	4.63
254	255	2.202810	GCTAGCAGTGTCGGCCTC	60.203	66.667	10.63	0.00	0.00	4.70
255	256	3.775654	GGCTAGCAGTGTCGGCCT	61.776	66.667	18.24	0.00	39.68	5.19
258	259	3.417275	CTCCGGCTAGCAGTGTCGG	62.417	68.421	19.58	19.58	41.80	4.79
259	260	2.103143	CTCCGGCTAGCAGTGTCG	59.897	66.667	18.24	10.19	0.00	4.35
260	261	1.139947	GACTCCGGCTAGCAGTGTC	59.860	63.158	18.24	17.98	0.00	3.67
261	262	0.972983	ATGACTCCGGCTAGCAGTGT	60.973	55.000	18.24	13.67	0.00	3.55
262	263	0.529337	CATGACTCCGGCTAGCAGTG	60.529	60.000	18.24	10.49	0.00	3.66
263	264	0.684479	TCATGACTCCGGCTAGCAGT	60.684	55.000	18.24	11.65	0.00	4.40
264	265	0.249238	GTCATGACTCCGGCTAGCAG	60.249	60.000	18.83	13.09	0.00	4.24
265	266	1.676678	GGTCATGACTCCGGCTAGCA	61.677	60.000	24.50	0.00	0.00	3.49
266	267	1.068250	GGTCATGACTCCGGCTAGC	59.932	63.158	24.50	6.04	0.00	3.42
267	268	1.360551	CGGTCATGACTCCGGCTAG	59.639	63.158	24.50	0.00	42.61	3.42
268	269	2.782222	GCGGTCATGACTCCGGCTA	61.782	63.158	24.50	0.00	45.85	3.93
269	270	4.148825	GCGGTCATGACTCCGGCT	62.149	66.667	24.50	0.00	45.85	5.52
271	272	4.873129	CCGCGGTCATGACTCCGG	62.873	72.222	29.33	29.33	45.85	5.14
273	274	0.956633	TATACCGCGGTCATGACTCC	59.043	55.000	38.01	14.51	0.00	3.85
274	275	1.666311	GCTATACCGCGGTCATGACTC	60.666	57.143	38.01	14.64	0.00	3.36
275	276	0.314302	GCTATACCGCGGTCATGACT	59.686	55.000	38.01	15.65	0.00	3.41
276	277	0.666577	GGCTATACCGCGGTCATGAC	60.667	60.000	38.01	23.62	0.00	3.06
277	278	1.110518	TGGCTATACCGCGGTCATGA	61.111	55.000	38.01	19.09	43.94	3.07
278	279	0.037326	ATGGCTATACCGCGGTCATG	60.037	55.000	38.01	25.12	43.94	3.07
279	280	1.203994	GTATGGCTATACCGCGGTCAT	59.796	52.381	38.01	30.86	43.94	3.06
280	281	0.599558	GTATGGCTATACCGCGGTCA	59.400	55.000	38.01	26.52	43.94	4.02
281	282	0.886563	AGTATGGCTATACCGCGGTC	59.113	55.000	38.01	20.89	43.94	4.79
282	283	0.601558	CAGTATGGCTATACCGCGGT	59.398	55.000	36.01	36.01	43.94	5.68
283	284	0.885879	TCAGTATGGCTATACCGCGG	59.114	55.000	26.86	26.86	43.94	6.46
284	285	1.268625	TGTCAGTATGGCTATACCGCG	59.731	52.381	15.87	0.00	44.57	6.46
285	286	3.380479	TTGTCAGTATGGCTATACCGC	57.620	47.619	15.87	7.72	44.57	5.68
286	287	5.113383	TGTTTTGTCAGTATGGCTATACCG	58.887	41.667	15.87	6.84	44.57	4.02
287	288	6.995511	TTGTTTTGTCAGTATGGCTATACC	57.004	37.500	15.87	2.73	44.57	2.73
288	289	6.912591	GCATTGTTTTGTCAGTATGGCTATAC	59.087	38.462	12.02	12.02	44.57	1.47
289	290	6.238347	CGCATTGTTTTGTCAGTATGGCTATA	60.238	38.462	0.00	0.00	44.57	1.31
290	291	5.449041	CGCATTGTTTTGTCAGTATGGCTAT	60.449	40.000	0.00	0.00	44.57	2.97
291	292	4.142708	CGCATTGTTTTGTCAGTATGGCTA	60.143	41.667	0.00	0.00	44.57	3.93
292	293	3.366273	CGCATTGTTTTGTCAGTATGGCT	60.366	43.478	0.00	0.00	44.57	4.75
293	294	2.916716	CGCATTGTTTTGTCAGTATGGC	59.083	45.455	0.00	0.00	44.49	4.40
294	295	3.500982	CCGCATTGTTTTGTCAGTATGG	58.499	45.455	0.00	0.00	36.16	2.74
295	296	2.916716	GCCGCATTGTTTTGTCAGTATG	59.083	45.455	0.00	0.00	37.54	2.39
296	297	2.556189	TGCCGCATTGTTTTGTCAGTAT	59.444	40.909	0.00	0.00	0.00	2.12
297	298	1.950216	TGCCGCATTGTTTTGTCAGTA	59.050	42.857	0.00	0.00	0.00	2.74
298	299	0.743688	TGCCGCATTGTTTTGTCAGT	59.256	45.000	0.00	0.00	0.00	3.41
299	300	1.130955	GTGCCGCATTGTTTTGTCAG	58.869	50.000	0.00	0.00	0.00	3.51
300	301	0.743688	AGTGCCGCATTGTTTTGTCA	59.256	45.000	0.00	0.00	0.00	3.58
301	302	1.408422	GAGTGCCGCATTGTTTTGTC	58.592	50.000	0.00	0.00	0.00	3.18
302	303	0.031994	GGAGTGCCGCATTGTTTTGT	59.968	50.000	0.00	0.00	0.00	2.83
303	304	2.813100	GGAGTGCCGCATTGTTTTG	58.187	52.632	0.00	0.00	0.00	2.44
316	317	3.177194	TTGAGGTGGTGGCGGAGTG	62.177	63.158	0.00	0.00	0.00	3.51
317	318	2.847234	TTGAGGTGGTGGCGGAGT	60.847	61.111	0.00	0.00	0.00	3.85
318	319	2.358737	GTTGAGGTGGTGGCGGAG	60.359	66.667	0.00	0.00	0.00	4.63
319	320	3.948719	GGTTGAGGTGGTGGCGGA	61.949	66.667	0.00	0.00	0.00	5.54
322	323	3.897122	TGGGGTTGAGGTGGTGGC	61.897	66.667	0.00	0.00	0.00	5.01
323	324	2.115266	GTGGGGTTGAGGTGGTGG	59.885	66.667	0.00	0.00	0.00	4.61
324	325	2.281484	CGTGGGGTTGAGGTGGTG	60.281	66.667	0.00	0.00	0.00	4.17
325	326	3.566210	CCGTGGGGTTGAGGTGGT	61.566	66.667	0.00	0.00	0.00	4.16
329	330	4.047125	ATGGCCGTGGGGTTGAGG	62.047	66.667	0.00	0.00	34.97	3.86
330	331	2.751436	CATGGCCGTGGGGTTGAG	60.751	66.667	17.90	0.00	34.97	3.02
331	332	4.358841	CCATGGCCGTGGGGTTGA	62.359	66.667	33.41	0.00	35.55	3.18
337	338	4.181010	CTCCTCCCATGGCCGTGG	62.181	72.222	33.95	33.95	39.05	4.94
338	339	3.083349	TCTCCTCCCATGGCCGTG	61.083	66.667	18.73	18.73	0.00	4.94
339	340	3.083997	GTCTCCTCCCATGGCCGT	61.084	66.667	6.09	0.00	0.00	5.68
340	341	3.866582	GGTCTCCTCCCATGGCCG	61.867	72.222	6.09	0.00	0.00	6.13
341	342	3.493303	GGGTCTCCTCCCATGGCC	61.493	72.222	6.09	0.00	46.30	5.36
386	387	3.512516	GCCCAGGAGTGCGATTGC	61.513	66.667	0.00	0.00	43.20	3.56
387	388	2.046023	TGCCCAGGAGTGCGATTG	60.046	61.111	0.00	0.00	0.00	2.67
388	389	2.270205	CTGCCCAGGAGTGCGATT	59.730	61.111	0.00	0.00	0.00	3.34
389	390	4.479993	GCTGCCCAGGAGTGCGAT	62.480	66.667	0.00	0.00	0.00	4.58
393	394	3.957586	TGGTGCTGCCCAGGAGTG	61.958	66.667	5.85	0.00	36.04	3.51
394	395	3.958860	GTGGTGCTGCCCAGGAGT	61.959	66.667	9.67	0.00	34.43	3.85
395	396	4.729918	GGTGGTGCTGCCCAGGAG	62.730	72.222	9.67	0.00	34.43	3.69
402	403	2.668212	TAACGCTGGTGGTGCTGC	60.668	61.111	0.00	0.00	0.00	5.25
403	404	2.034879	CCTAACGCTGGTGGTGCTG	61.035	63.158	0.00	0.00	0.00	4.41
404	405	2.172483	CTCCTAACGCTGGTGGTGCT	62.172	60.000	0.00	0.00	0.00	4.40
405	406	1.741770	CTCCTAACGCTGGTGGTGC	60.742	63.158	0.00	0.00	0.00	5.01
406	407	1.741770	GCTCCTAACGCTGGTGGTG	60.742	63.158	0.00	0.00	0.00	4.17
407	408	2.172483	CTGCTCCTAACGCTGGTGGT	62.172	60.000	0.00	0.00	0.00	4.16
408	409	1.448540	CTGCTCCTAACGCTGGTGG	60.449	63.158	0.00	0.00	0.00	4.61
409	410	1.448540	CCTGCTCCTAACGCTGGTG	60.449	63.158	0.00	0.00	40.39	4.17
410	411	1.192146	TTCCTGCTCCTAACGCTGGT	61.192	55.000	7.62	0.00	44.12	4.00
411	412	0.179000	ATTCCTGCTCCTAACGCTGG	59.821	55.000	0.00	0.00	44.83	4.85
412	413	1.576356	GATTCCTGCTCCTAACGCTG	58.424	55.000	0.00	0.00	0.00	5.18
413	414	0.466124	GGATTCCTGCTCCTAACGCT	59.534	55.000	0.00	0.00	0.00	5.07
414	415	0.178068	TGGATTCCTGCTCCTAACGC	59.822	55.000	3.95	0.00	33.69	4.84
415	416	2.918712	ATGGATTCCTGCTCCTAACG	57.081	50.000	3.95	0.00	33.69	3.18
416	417	3.134458	CGAATGGATTCCTGCTCCTAAC	58.866	50.000	3.95	0.00	33.69	2.34
417	418	2.771943	ACGAATGGATTCCTGCTCCTAA	59.228	45.455	3.95	0.00	33.69	2.69
418	419	2.398588	ACGAATGGATTCCTGCTCCTA	58.601	47.619	3.95	0.00	33.69	2.94
419	420	1.207791	ACGAATGGATTCCTGCTCCT	58.792	50.000	3.95	0.00	33.69	3.69
420	421	2.158957	TGTACGAATGGATTCCTGCTCC	60.159	50.000	3.95	0.00	33.28	4.70
421	422	3.179443	TGTACGAATGGATTCCTGCTC	57.821	47.619	3.95	0.00	33.28	4.26
422	423	3.627395	TTGTACGAATGGATTCCTGCT	57.373	42.857	3.95	0.00	33.28	4.24
423	424	3.689649	AGTTTGTACGAATGGATTCCTGC	59.310	43.478	3.95	0.00	33.28	4.85
424	425	6.338146	TCTAGTTTGTACGAATGGATTCCTG	58.662	40.000	3.95	0.00	33.28	3.86
425	426	6.407074	CCTCTAGTTTGTACGAATGGATTCCT	60.407	42.308	3.95	0.00	33.28	3.36
426	427	5.753921	CCTCTAGTTTGTACGAATGGATTCC	59.246	44.000	0.00	0.00	33.28	3.01
436	437	1.822990	TGGAGCCCTCTAGTTTGTACG	59.177	52.381	0.00	0.00	0.00	3.67
563	565	0.249911	GGAAGGTTCTGACGCTGTGT	60.250	55.000	0.00	0.00	0.00	3.72
564	566	0.249868	TGGAAGGTTCTGACGCTGTG	60.250	55.000	0.00	0.00	0.00	3.66
566	568	1.363744	GATGGAAGGTTCTGACGCTG	58.636	55.000	0.00	0.00	0.00	5.18
567	569	0.250513	GGATGGAAGGTTCTGACGCT	59.749	55.000	0.00	0.00	0.00	5.07
569	571	1.084370	GCGGATGGAAGGTTCTGACG	61.084	60.000	0.00	0.00	0.00	4.35
570	572	0.250513	AGCGGATGGAAGGTTCTGAC	59.749	55.000	0.00	0.00	0.00	3.51
571	573	0.537188	GAGCGGATGGAAGGTTCTGA	59.463	55.000	0.00	0.00	0.00	3.27
596	598	1.735559	GGAGCCCACGTCGTGTAAC	60.736	63.158	23.01	12.15	0.00	2.50
676	681	2.163390	CACATCTCGTGCCAGCTCG	61.163	63.158	7.73	7.73	39.19	5.03
964	984	1.202604	GGATCGGGCGGAGAATTACAA	60.203	52.381	0.20	0.00	0.00	2.41
965	985	0.391597	GGATCGGGCGGAGAATTACA	59.608	55.000	0.20	0.00	0.00	2.41
969	989	3.460995	GAGGATCGGGCGGAGAAT	58.539	61.111	0.20	0.00	0.00	2.40
1149	1172	3.591835	CGCGAGAGAGGAGGAGCC	61.592	72.222	0.00	0.00	0.00	4.70
1178	1201	4.612412	AACAAGAACGGCCGGCGA	62.612	61.111	31.76	0.00	0.00	5.54
1180	1203	4.038080	CCAACAAGAACGGCCGGC	62.038	66.667	31.76	21.18	0.00	6.13
1210	1233	4.722700	ACACATGCTCGGGGCCAC	62.723	66.667	4.39	0.00	40.92	5.01
1243	1266	1.962822	CACACCACAGAGCATGCGT	60.963	57.895	13.01	0.75	0.00	5.24
1244	1267	1.509644	AACACACCACAGAGCATGCG	61.510	55.000	13.01	0.00	0.00	4.73
1499	1522	3.242712	GGAACAGATTGCAACAACAAACG	59.757	43.478	0.00	0.00	32.27	3.60
1516	1539	5.512942	TCTTGGGAAGACATTATGGAACA	57.487	39.130	0.00	0.00	35.76	3.18
1552	1575	4.005650	ACAAGCAGAGAACATGTACATGG	58.994	43.478	33.32	18.71	42.91	3.66
1554	1577	4.456911	CCAACAAGCAGAGAACATGTACAT	59.543	41.667	1.41	1.41	0.00	2.29
1640	1675	5.925509	AGAGCAAAAACCACACTAACTAGA	58.074	37.500	0.00	0.00	0.00	2.43
1668	1703	6.678663	CGCGCAAATCAATATAACTATAGCAC	59.321	38.462	8.75	0.00	0.00	4.40
1674	1709	6.838198	ACTTCGCGCAAATCAATATAACTA	57.162	33.333	8.75	0.00	0.00	2.24
1690	1725	6.075099	ACAACAAATCAACATAAAACTTCGCG	60.075	34.615	0.00	0.00	0.00	5.87
1692	1727	8.114359	ACACAACAAATCAACATAAAACTTCG	57.886	30.769	0.00	0.00	0.00	3.79
1709	1744	7.397892	TTTTCTCTACCAAATGACACAACAA	57.602	32.000	0.00	0.00	0.00	2.83
1717	1752	4.280436	TCGCCTTTTCTCTACCAAATGA	57.720	40.909	0.00	0.00	0.00	2.57
1726	1761	5.491982	ACACATAGAATTCGCCTTTTCTCT	58.508	37.500	0.00	0.00	34.22	3.10
1727	1762	5.803020	ACACATAGAATTCGCCTTTTCTC	57.197	39.130	0.00	0.00	34.22	2.87
1766	1804	8.087750	TCCAAAAAGAAAGTGGTAGCAAATATG	58.912	33.333	0.00	0.00	33.88	1.78
1767	1805	8.189119	TCCAAAAAGAAAGTGGTAGCAAATAT	57.811	30.769	0.00	0.00	33.88	1.28
1769	1807	6.478512	TCCAAAAAGAAAGTGGTAGCAAAT	57.521	33.333	0.00	0.00	33.88	2.32
1770	1808	5.923733	TCCAAAAAGAAAGTGGTAGCAAA	57.076	34.783	0.00	0.00	33.88	3.68
1772	1810	4.261994	GCATCCAAAAAGAAAGTGGTAGCA	60.262	41.667	0.00	0.00	35.14	3.49
1773	1811	4.237724	GCATCCAAAAAGAAAGTGGTAGC	58.762	43.478	0.00	0.00	33.88	3.58
1775	1813	3.305064	GCGCATCCAAAAAGAAAGTGGTA	60.305	43.478	0.30	0.00	33.88	3.25
1776	1814	2.545742	GCGCATCCAAAAAGAAAGTGGT	60.546	45.455	0.30	0.00	33.88	4.16
1779	1817	1.686052	TGGCGCATCCAAAAAGAAAGT	59.314	42.857	10.83	0.00	43.21	2.66
1811	2090	5.442391	TCCGGAAAATAATCGGAGGAAAAT	58.558	37.500	0.00	0.00	46.48	1.82
1830	2109	9.878599	GAATAATGAGTAACAAAATATGTCCGG	57.121	33.333	0.00	0.00	42.99	5.14
1960	2246	1.557099	TAGAGGCGTGTGGATCTTGT	58.443	50.000	0.00	0.00	0.00	3.16
1961	2247	2.166459	TCTTAGAGGCGTGTGGATCTTG	59.834	50.000	0.00	0.00	0.00	3.02
2000	2286	4.820173	TGCTCTATGAAATCTGCCTGAATG	59.180	41.667	0.00	0.00	0.00	2.67
2139	2425	2.303022	TGCCATTTCTCTCTCGGTTTCT	59.697	45.455	0.00	0.00	0.00	2.52
2304	2590	4.959596	AAATTCAGTACAGATGCAGCAG	57.040	40.909	4.07	0.00	0.00	4.24
2341	2627	1.134128	TGCTGAGCTGTTTGGTGAAGA	60.134	47.619	5.83	0.00	0.00	2.87
2347	2633	0.729116	CGGTATGCTGAGCTGTTTGG	59.271	55.000	5.83	0.00	0.00	3.28
2456	2742	2.189191	GAGCCTGATCAGCCACCACA	62.189	60.000	17.76	0.00	0.00	4.17
2590	2890	2.289444	TGCGTCTGTCTTTTCCTTAGGG	60.289	50.000	0.00	0.00	0.00	3.53
2607	2907	3.322369	TGTAATGAAATCGACAGTGCGT	58.678	40.909	6.81	0.00	0.00	5.24
2630	2931	2.025898	GAAGTTTGTTCCCCGTTTCCA	58.974	47.619	0.00	0.00	0.00	3.53
2699	3004	8.184192	GGGAGTCACATTAACTTCAACATAATG	58.816	37.037	0.00	0.00	40.92	1.90
2773	3078	9.823647	ACAGTGATCTATCTAACAACCATTTAG	57.176	33.333	0.00	0.00	0.00	1.85
2798	3103	3.194542	ACTCAGCTATGGAGTGTCAAGAC	59.805	47.826	4.49	0.00	43.65	3.01
2825	3189	5.717119	ACAACCACCTAGTGATAAAGTACG	58.283	41.667	0.00	0.00	35.23	3.67
2834	3198	5.305902	TGATCAAGTTACAACCACCTAGTGA	59.694	40.000	0.00	0.00	35.23	3.41
2879	3243	2.233186	GTGGTTGACTGGTAGGTACTCC	59.767	54.545	0.00	0.00	41.75	3.85
2913	3277	4.225942	ACTGATGACCAGCTGGAAAATAGA	59.774	41.667	39.19	16.03	46.81	1.98
2930	3294	9.987272	TTAGTACCAGATAAATCATCACTGATG	57.013	33.333	12.25	12.25	41.34	3.07
2977	3341	7.457024	AGACTCTCTGAACCTTAGTCTTTAC	57.543	40.000	0.00	0.00	43.25	2.01
3032	3396	2.973406	AGGTCCCCCGCAAAAATAAAAA	59.027	40.909	0.00	0.00	35.12	1.94
3033	3397	2.610873	AGGTCCCCCGCAAAAATAAAA	58.389	42.857	0.00	0.00	35.12	1.52
3034	3398	2.312424	AGGTCCCCCGCAAAAATAAA	57.688	45.000	0.00	0.00	35.12	1.40
3035	3399	3.673543	ATAGGTCCCCCGCAAAAATAA	57.326	42.857	0.00	0.00	35.12	1.40
3036	3400	3.717913	ACTATAGGTCCCCCGCAAAAATA	59.282	43.478	4.43	0.00	35.12	1.40
3037	3401	2.512476	ACTATAGGTCCCCCGCAAAAAT	59.488	45.455	4.43	0.00	35.12	1.82
3038	3402	1.917568	ACTATAGGTCCCCCGCAAAAA	59.082	47.619	4.43	0.00	35.12	1.94
3039	3403	1.587066	ACTATAGGTCCCCCGCAAAA	58.413	50.000	4.43	0.00	35.12	2.44
3040	3404	2.041701	GTACTATAGGTCCCCCGCAAA	58.958	52.381	4.43	0.00	35.12	3.68
3041	3405	1.218704	AGTACTATAGGTCCCCCGCAA	59.781	52.381	4.43	0.00	35.12	4.85
3042	3406	0.855598	AGTACTATAGGTCCCCCGCA	59.144	55.000	4.43	0.00	35.12	5.69
3043	3407	1.075212	AGAGTACTATAGGTCCCCCGC	59.925	57.143	4.43	0.00	35.12	6.13
3044	3408	2.374504	TCAGAGTACTATAGGTCCCCCG	59.625	54.545	4.43	0.00	35.12	5.73
3045	3409	4.466255	TTCAGAGTACTATAGGTCCCCC	57.534	50.000	4.43	0.00	0.00	5.40
3046	3410	5.898397	AGTTTTCAGAGTACTATAGGTCCCC	59.102	44.000	4.43	0.00	0.00	4.81
3047	3411	6.606395	TGAGTTTTCAGAGTACTATAGGTCCC	59.394	42.308	4.43	0.00	0.00	4.46
3048	3412	7.416551	GGTGAGTTTTCAGAGTACTATAGGTCC	60.417	44.444	4.43	0.00	32.98	4.46
3049	3413	7.339976	AGGTGAGTTTTCAGAGTACTATAGGTC	59.660	40.741	4.43	0.00	32.98	3.85
3050	3414	7.183460	AGGTGAGTTTTCAGAGTACTATAGGT	58.817	38.462	4.43	0.00	32.98	3.08
3051	3415	7.648039	AGGTGAGTTTTCAGAGTACTATAGG	57.352	40.000	4.43	0.00	32.98	2.57
3052	3416	8.842280	CCTAGGTGAGTTTTCAGAGTACTATAG	58.158	40.741	0.00	0.00	32.98	1.31
3053	3417	8.554870	TCCTAGGTGAGTTTTCAGAGTACTATA	58.445	37.037	9.08	0.00	32.98	1.31
3054	3418	7.339976	GTCCTAGGTGAGTTTTCAGAGTACTAT	59.660	40.741	9.08	0.00	32.98	2.12
3085	3449	1.295792	TGTCACAGTGAGGAAAACGC	58.704	50.000	2.53	0.00	0.00	4.84
3093	3457	6.974932	ATTGTAGCTTAATGTCACAGTGAG	57.025	37.500	2.53	0.00	0.00	3.51
3109	3473	6.265196	TCATTTCCCAATCATGGTATTGTAGC	59.735	38.462	6.43	0.00	46.01	3.58
3112	3476	7.502696	CATTCATTTCCCAATCATGGTATTGT	58.497	34.615	6.43	0.00	46.01	2.71
3129	3493	2.799017	TGCACCTCTCTGCATTCATTT	58.201	42.857	0.00	0.00	42.36	2.32
3186	3550	4.734398	TCCGATAATGGCAATTGCTTTT	57.266	36.364	28.42	22.40	41.70	2.27
3339	3724	1.201647	CACCGGCTACCATATCCTACG	59.798	57.143	0.00	0.00	0.00	3.51
3466	3851	6.033196	CGTAAGCAATGTATACCTATGTACGC	59.967	42.308	0.00	0.00	0.00	4.42
3515	3900	8.726988	GGAGCAGACATTTTACACAACTAATAA	58.273	33.333	0.00	0.00	0.00	1.40
3516	3901	8.100791	AGGAGCAGACATTTTACACAACTAATA	58.899	33.333	0.00	0.00	0.00	0.98
3517	3902	6.942576	AGGAGCAGACATTTTACACAACTAAT	59.057	34.615	0.00	0.00	0.00	1.73
3558	3943	2.445654	CTCTCCCCTCTCCCCTGC	60.446	72.222	0.00	0.00	0.00	4.85
3559	3944	1.232792	CTCTCTCCCCTCTCCCCTG	59.767	68.421	0.00	0.00	0.00	4.45
3560	3945	0.998945	CTCTCTCTCCCCTCTCCCCT	60.999	65.000	0.00	0.00	0.00	4.79
3561	3946	1.293683	ACTCTCTCTCCCCTCTCCCC	61.294	65.000	0.00	0.00	0.00	4.81
3562	3947	1.525175	TACTCTCTCTCCCCTCTCCC	58.475	60.000	0.00	0.00	0.00	4.30
3563	3948	3.653836	TGTATACTCTCTCTCCCCTCTCC	59.346	52.174	4.17	0.00	0.00	3.71
3564	3949	4.103469	TGTGTATACTCTCTCTCCCCTCTC	59.897	50.000	4.17	0.00	0.00	3.20
3712	4099	9.555727	TTCTAAAATGGCTTGTATACATCCTAC	57.444	33.333	19.39	6.47	0.00	3.18
3893	7234	6.197168	TGCTCCCTCATATGGAATTCTTTTT	58.803	36.000	5.23	0.00	0.00	1.94
3894	7235	5.769835	TGCTCCCTCATATGGAATTCTTTT	58.230	37.500	5.23	0.00	0.00	2.27
3898	7239	4.630644	TCTGCTCCCTCATATGGAATTC	57.369	45.455	2.13	0.00	0.00	2.17
3901	7242	5.393068	AAAATCTGCTCCCTCATATGGAA	57.607	39.130	2.13	0.00	0.00	3.53
4067	7409	6.406400	CCGAGAATCAAATGGTCTCTTACTCT	60.406	42.308	10.99	0.00	36.46	3.24
4078	7420	5.393962	GTTTTCACTCCGAGAATCAAATGG	58.606	41.667	1.33	0.00	33.17	3.16
4135	7477	7.745620	ACTAGAACATAAACCCAAGTTTCTG	57.254	36.000	0.00	0.00	42.67	3.02
4165	7507	4.020543	GCCACCAGTCCCAAAAATATACA	58.979	43.478	0.00	0.00	0.00	2.29
4215	7557	6.272090	TCAATACACAAGGCATATATCTCCCA	59.728	38.462	0.00	0.00	0.00	4.37
4265	7607	7.924947	AGATAGCGGGAAAACTAAATGTAGTAC	59.075	37.037	0.00	0.00	39.79	2.73
4295	7637	8.019669	TGAAATGAGTTTCACTACTACTACGAC	58.980	37.037	0.00	0.00	46.49	4.34
4317	7659	3.118186	TCGGTGTCCTCCTTTTTCTGAAA	60.118	43.478	0.00	0.00	0.00	2.69
4407	7756	7.181361	TCCAAATCTTTGATCCCTCATTTACA	58.819	34.615	4.25	0.00	40.55	2.41
4414	7763	6.605119	TCCTATTCCAAATCTTTGATCCCTC	58.395	40.000	4.25	0.00	40.55	4.30
4416	7765	6.836007	ACTTCCTATTCCAAATCTTTGATCCC	59.164	38.462	4.25	0.00	40.55	3.85
4430	7779	2.969262	CCCTCTCCTCACTTCCTATTCC	59.031	54.545	0.00	0.00	0.00	3.01
4439	7788	4.078922	TCATCTATTCACCCTCTCCTCACT	60.079	45.833	0.00	0.00	0.00	3.41
4441	7790	4.078922	ACTCATCTATTCACCCTCTCCTCA	60.079	45.833	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.