Multiple sequence alignment - TraesCS6D01G287300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G287300 chr6D 100.000 2863 0 0 1 2863 396536268 396533406 0.000000e+00 5288
1 TraesCS6D01G287300 chr6D 96.966 857 22 3 1 855 34404672 34403818 0.000000e+00 1435
2 TraesCS6D01G287300 chr6B 95.520 1116 38 2 850 1960 593072273 593071165 0.000000e+00 1773
3 TraesCS6D01G287300 chr6B 92.804 542 33 3 1958 2493 593071123 593070582 0.000000e+00 780
4 TraesCS6D01G287300 chr6B 93.382 136 9 0 2485 2620 593069391 593069256 4.840000e-48 202
5 TraesCS6D01G287300 chr7D 96.959 855 20 4 1 853 167223103 167222253 0.000000e+00 1430
6 TraesCS6D01G287300 chr2D 96.737 858 22 4 1 856 547284897 547284044 0.000000e+00 1424
7 TraesCS6D01G287300 chr2D 92.933 849 27 5 1 846 326268206 326269024 0.000000e+00 1205
8 TraesCS6D01G287300 chr1D 96.366 853 16 7 2 852 376288349 376287510 0.000000e+00 1389
9 TraesCS6D01G287300 chr4D 96.009 852 18 8 3 852 504322428 504321591 0.000000e+00 1371
10 TraesCS6D01G287300 chr4D 93.003 686 17 5 174 857 29419869 29420525 0.000000e+00 972
11 TraesCS6D01G287300 chr4D 93.182 572 10 5 285 853 456269239 456269784 0.000000e+00 813
12 TraesCS6D01G287300 chr6A 94.876 683 23 2 1283 1960 542828848 542828173 0.000000e+00 1057
13 TraesCS6D01G287300 chr6A 90.746 670 38 8 1955 2620 542828135 542827486 0.000000e+00 872
14 TraesCS6D01G287300 chr6A 93.503 431 15 3 850 1279 542829299 542828881 1.870000e-176 628
15 TraesCS6D01G287300 chrUn 95.382 563 18 5 1 556 379696147 379695586 0.000000e+00 889
16 TraesCS6D01G287300 chrUn 95.213 564 18 6 1 556 51401582 51402144 0.000000e+00 883
17 TraesCS6D01G287300 chrUn 95.027 563 20 5 1 556 365109334 365108773 0.000000e+00 878
18 TraesCS6D01G287300 chrUn 96.250 320 10 2 539 857 100334018 100333700 9.090000e-145 523
19 TraesCS6D01G287300 chr1B 93.783 563 27 6 1 556 522623789 522623228 0.000000e+00 839
20 TraesCS6D01G287300 chr3D 94.921 315 13 3 539 852 580277466 580277154 9.220000e-135 490


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G287300 chr6D 396533406 396536268 2862 True 5288.000000 5288 100.000000 1 2863 1 chr6D.!!$R2 2862
1 TraesCS6D01G287300 chr6D 34403818 34404672 854 True 1435.000000 1435 96.966000 1 855 1 chr6D.!!$R1 854
2 TraesCS6D01G287300 chr6B 593069256 593072273 3017 True 918.333333 1773 93.902000 850 2620 3 chr6B.!!$R1 1770
3 TraesCS6D01G287300 chr7D 167222253 167223103 850 True 1430.000000 1430 96.959000 1 853 1 chr7D.!!$R1 852
4 TraesCS6D01G287300 chr2D 547284044 547284897 853 True 1424.000000 1424 96.737000 1 856 1 chr2D.!!$R1 855
5 TraesCS6D01G287300 chr2D 326268206 326269024 818 False 1205.000000 1205 92.933000 1 846 1 chr2D.!!$F1 845
6 TraesCS6D01G287300 chr1D 376287510 376288349 839 True 1389.000000 1389 96.366000 2 852 1 chr1D.!!$R1 850
7 TraesCS6D01G287300 chr4D 504321591 504322428 837 True 1371.000000 1371 96.009000 3 852 1 chr4D.!!$R1 849
8 TraesCS6D01G287300 chr4D 29419869 29420525 656 False 972.000000 972 93.003000 174 857 1 chr4D.!!$F1 683
9 TraesCS6D01G287300 chr4D 456269239 456269784 545 False 813.000000 813 93.182000 285 853 1 chr4D.!!$F2 568
10 TraesCS6D01G287300 chr6A 542827486 542829299 1813 True 852.333333 1057 93.041667 850 2620 3 chr6A.!!$R1 1770
11 TraesCS6D01G287300 chrUn 379695586 379696147 561 True 889.000000 889 95.382000 1 556 1 chrUn.!!$R3 555
12 TraesCS6D01G287300 chrUn 51401582 51402144 562 False 883.000000 883 95.213000 1 556 1 chrUn.!!$F1 555
13 TraesCS6D01G287300 chrUn 365108773 365109334 561 True 878.000000 878 95.027000 1 556 1 chrUn.!!$R2 555
14 TraesCS6D01G287300 chr1B 522623228 522623789 561 True 839.000000 839 93.783000 1 556 1 chr1B.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 1.472480 GTTGTTGTTGTGTGGTGCTCT 59.528 47.619 0.00 0.00 0.00 4.09 F
429 455 2.264813 GCATCTTCGCCGTGTAGTTTA 58.735 47.619 0.00 0.00 0.00 2.01 F
1069 1117 2.279318 GTAGAAGCGGCGGCCTAC 60.279 66.667 18.34 13.66 41.24 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1266 0.036732 GCCAGATGGACTTGGTGACA 59.963 55.0 2.18 0.0 37.39 3.58 R
1398 1475 0.886938 TTGCCTTCATGGACGCGAAA 60.887 50.0 15.93 0.0 38.35 3.46 R
2692 4023 0.036306 AGCCTTTGAGTTACGGTGGG 59.964 55.0 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 3.505790 ATGGGGTTCGTTGGCTGCA 62.506 57.895 0.50 0.00 0.00 4.41
223 224 1.472480 GTTGTTGTTGTGTGGTGCTCT 59.528 47.619 0.00 0.00 0.00 4.09
429 455 2.264813 GCATCTTCGCCGTGTAGTTTA 58.735 47.619 0.00 0.00 0.00 2.01
564 607 3.627952 TTGGTTGCTACGGCGGGA 61.628 61.111 13.24 0.00 42.25 5.14
742 786 3.325425 CCGGTGGTACCCATGTTATATGA 59.675 47.826 10.07 0.00 35.28 2.15
1060 1108 4.124351 TGCCGTCCGGTAGAAGCG 62.124 66.667 7.66 0.00 39.06 4.68
1069 1117 2.279318 GTAGAAGCGGCGGCCTAC 60.279 66.667 18.34 13.66 41.24 3.18
1071 1119 3.072486 TAGAAGCGGCGGCCTACAC 62.072 63.158 18.34 6.26 41.24 2.90
1281 1329 3.255642 AGAGCTTCTGTGAGACTTCTGTC 59.744 47.826 0.00 0.00 43.22 3.51
1398 1475 2.032681 GTCTGGGGCGTCTGCTTT 59.967 61.111 0.00 0.00 42.25 3.51
1419 1496 1.741401 CGCGTCCATGAAGGCAAGA 60.741 57.895 0.00 0.00 37.29 3.02
1430 1507 1.250840 AAGGCAAGAACGGCAATCCC 61.251 55.000 0.00 0.00 0.00 3.85
1431 1508 2.710902 GGCAAGAACGGCAATCCCC 61.711 63.158 0.00 0.00 0.00 4.81
1432 1509 1.976474 GCAAGAACGGCAATCCCCA 60.976 57.895 0.00 0.00 0.00 4.96
1433 1510 1.937546 GCAAGAACGGCAATCCCCAG 61.938 60.000 0.00 0.00 0.00 4.45
1434 1511 0.609131 CAAGAACGGCAATCCCCAGT 60.609 55.000 0.00 0.00 0.00 4.00
1435 1512 0.322546 AAGAACGGCAATCCCCAGTC 60.323 55.000 0.00 0.00 0.00 3.51
1436 1513 1.201429 AGAACGGCAATCCCCAGTCT 61.201 55.000 0.00 0.00 0.00 3.24
1571 1648 2.751436 CAAGGGGGTGATGGCACG 60.751 66.667 0.00 0.00 46.09 5.34
1596 1673 2.289002 CACTGGTACTACGATCGGGTAC 59.711 54.545 28.96 28.96 36.18 3.34
1626 1703 3.282885 CCTCTTCCCTCTATTTTGCCAC 58.717 50.000 0.00 0.00 0.00 5.01
1631 1708 2.019984 CCCTCTATTTTGCCACTCAGC 58.980 52.381 0.00 0.00 0.00 4.26
1706 1783 3.253188 GTGCTGAAGAAATGTGTGGCTAA 59.747 43.478 0.00 0.00 0.00 3.09
1742 1824 0.321346 TGCAGCAAGAGGACATCGAA 59.679 50.000 0.00 0.00 0.00 3.71
1847 1929 2.456443 GGGAATGGAGGGGGAGCTC 61.456 68.421 4.71 4.71 0.00 4.09
1862 1944 0.820871 AGCTCGAGGAAGCCAAGTAG 59.179 55.000 15.58 0.00 43.56 2.57
1941 2023 4.439289 GCTGAAGTTGAGTGAAAAGCTTGT 60.439 41.667 0.00 0.00 0.00 3.16
2058 2187 4.825546 ATGCCAATCGAAATCACAGATC 57.174 40.909 0.00 0.00 0.00 2.75
2143 2272 0.108615 CTTCGGCTTGACGGTCTCAT 60.109 55.000 9.88 0.00 0.00 2.90
2150 2279 2.744202 GCTTGACGGTCTCATTTGACAT 59.256 45.455 9.88 0.00 38.61 3.06
2176 2305 5.070446 ACTTATATGCACTCCGGAAGATTGA 59.930 40.000 5.23 0.00 0.00 2.57
2238 2367 6.564328 GGAACAATCCATAATCTTGTTGGAC 58.436 40.000 4.77 0.00 45.79 4.02
2284 2416 5.468540 AAAATGTCTTGCCTAAACCTTCC 57.531 39.130 0.00 0.00 0.00 3.46
2292 2424 3.355378 TGCCTAAACCTTCCATGTCATG 58.645 45.455 5.79 5.79 0.00 3.07
2431 2563 4.640771 AGAGTCCAAAAAGGTGCATAGA 57.359 40.909 0.00 0.00 39.02 1.98
2546 3877 0.760945 ATCAACGCCTCCCTCCCTAG 60.761 60.000 0.00 0.00 0.00 3.02
2604 3935 2.223249 GCATCATACACCATCGCGTTTT 60.223 45.455 5.77 0.00 0.00 2.43
2620 3951 4.084849 CGCGTTTTATTCCTCAGCTATCAG 60.085 45.833 0.00 0.00 0.00 2.90
2621 3952 4.319118 GCGTTTTATTCCTCAGCTATCAGC 60.319 45.833 0.00 0.00 42.84 4.26
2622 3953 4.811024 CGTTTTATTCCTCAGCTATCAGCA 59.189 41.667 0.38 0.00 45.56 4.41
2623 3954 5.050499 CGTTTTATTCCTCAGCTATCAGCAG 60.050 44.000 0.38 0.00 45.56 4.24
2624 3955 4.613925 TTATTCCTCAGCTATCAGCAGG 57.386 45.455 0.38 0.00 45.56 4.85
2625 3956 1.126488 TTCCTCAGCTATCAGCAGGG 58.874 55.000 0.38 0.00 45.56 4.45
2626 3957 1.753470 CCTCAGCTATCAGCAGGGG 59.247 63.158 0.38 0.00 42.13 4.79
2627 3958 1.071128 CTCAGCTATCAGCAGGGGC 59.929 63.158 0.38 0.00 45.56 5.80
2628 3959 2.280660 CAGCTATCAGCAGGGGCG 60.281 66.667 0.38 0.00 45.56 6.13
2629 3960 2.765807 AGCTATCAGCAGGGGCGT 60.766 61.111 0.38 0.00 45.56 5.68
2630 3961 1.457643 AGCTATCAGCAGGGGCGTA 60.458 57.895 0.38 0.00 45.56 4.42
2631 3962 1.467678 AGCTATCAGCAGGGGCGTAG 61.468 60.000 0.38 0.00 45.56 3.51
2632 3963 3.833224 AGCTATCAGCAGGGGCGTAGA 62.833 57.143 0.38 0.00 45.56 2.59
2634 3965 5.723045 AGCTATCAGCAGGGGCGTAGATA 62.723 52.174 0.38 0.00 45.56 1.98
2637 3968 4.363034 GCAGGGGCGTAGATAAGC 57.637 61.111 0.00 0.00 0.00 3.09
2660 3991 3.489513 GCTACCCGGGCCAGGATT 61.490 66.667 25.19 12.31 0.00 3.01
2661 3992 2.510906 CTACCCGGGCCAGGATTG 59.489 66.667 25.19 9.43 0.00 2.67
2662 3993 2.285818 TACCCGGGCCAGGATTGT 60.286 61.111 25.19 15.20 0.00 2.71
2663 3994 1.003182 TACCCGGGCCAGGATTGTA 59.997 57.895 25.19 14.12 0.00 2.41
2664 3995 1.052124 TACCCGGGCCAGGATTGTAG 61.052 60.000 25.19 7.82 0.00 2.74
2665 3996 2.203209 CCGGGCCAGGATTGTAGC 60.203 66.667 18.42 0.00 0.00 3.58
2666 3997 2.589540 CGGGCCAGGATTGTAGCA 59.410 61.111 4.39 0.00 0.00 3.49
2667 3998 1.077787 CGGGCCAGGATTGTAGCAA 60.078 57.895 4.39 0.00 0.00 3.91
2668 3999 1.376609 CGGGCCAGGATTGTAGCAAC 61.377 60.000 4.39 0.00 0.00 4.17
2669 4000 0.323360 GGGCCAGGATTGTAGCAACA 60.323 55.000 4.39 0.00 0.00 3.33
2670 4001 1.098050 GGCCAGGATTGTAGCAACAG 58.902 55.000 0.00 0.00 36.83 3.16
2671 4002 1.614317 GGCCAGGATTGTAGCAACAGT 60.614 52.381 0.00 0.00 36.83 3.55
2672 4003 2.355716 GGCCAGGATTGTAGCAACAGTA 60.356 50.000 0.00 0.00 36.83 2.74
2673 4004 3.545703 GCCAGGATTGTAGCAACAGTAT 58.454 45.455 0.00 0.00 36.83 2.12
2674 4005 3.561725 GCCAGGATTGTAGCAACAGTATC 59.438 47.826 0.00 0.00 36.83 2.24
2675 4006 4.769688 CCAGGATTGTAGCAACAGTATCA 58.230 43.478 0.00 0.00 36.83 2.15
2676 4007 5.371526 CCAGGATTGTAGCAACAGTATCAT 58.628 41.667 0.00 0.00 36.83 2.45
2677 4008 6.524734 CCAGGATTGTAGCAACAGTATCATA 58.475 40.000 0.00 0.00 36.83 2.15
2678 4009 6.425114 CCAGGATTGTAGCAACAGTATCATAC 59.575 42.308 0.00 0.00 36.83 2.39
2679 4010 7.212976 CAGGATTGTAGCAACAGTATCATACT 58.787 38.462 0.00 0.00 40.28 2.12
2698 4029 1.404391 CTGTAGCTACAGTACCCACCG 59.596 57.143 35.77 15.64 46.51 4.94
2699 4030 1.272092 TGTAGCTACAGTACCCACCGT 60.272 52.381 22.67 0.00 0.00 4.83
2700 4031 2.026356 TGTAGCTACAGTACCCACCGTA 60.026 50.000 22.67 0.00 0.00 4.02
2701 4032 2.220653 AGCTACAGTACCCACCGTAA 57.779 50.000 0.00 0.00 0.00 3.18
2702 4033 1.821136 AGCTACAGTACCCACCGTAAC 59.179 52.381 0.00 0.00 0.00 2.50
2703 4034 1.821136 GCTACAGTACCCACCGTAACT 59.179 52.381 0.00 0.00 0.00 2.24
2704 4035 2.159324 GCTACAGTACCCACCGTAACTC 60.159 54.545 0.00 0.00 0.00 3.01
2705 4036 1.999648 ACAGTACCCACCGTAACTCA 58.000 50.000 0.00 0.00 0.00 3.41
2706 4037 2.318908 ACAGTACCCACCGTAACTCAA 58.681 47.619 0.00 0.00 0.00 3.02
2707 4038 2.699846 ACAGTACCCACCGTAACTCAAA 59.300 45.455 0.00 0.00 0.00 2.69
2708 4039 3.243975 ACAGTACCCACCGTAACTCAAAG 60.244 47.826 0.00 0.00 0.00 2.77
2709 4040 2.301009 AGTACCCACCGTAACTCAAAGG 59.699 50.000 0.00 0.00 0.00 3.11
2710 4041 0.250597 ACCCACCGTAACTCAAAGGC 60.251 55.000 0.00 0.00 0.00 4.35
2711 4042 0.036306 CCCACCGTAACTCAAAGGCT 59.964 55.000 0.00 0.00 0.00 4.58
2712 4043 1.276989 CCCACCGTAACTCAAAGGCTA 59.723 52.381 0.00 0.00 0.00 3.93
2713 4044 2.618053 CCACCGTAACTCAAAGGCTAG 58.382 52.381 0.00 0.00 0.00 3.42
2714 4045 2.000447 CACCGTAACTCAAAGGCTAGC 59.000 52.381 6.04 6.04 0.00 3.42
2715 4046 1.066358 ACCGTAACTCAAAGGCTAGCC 60.066 52.381 27.19 27.19 0.00 3.93
2730 4061 4.115199 GCCTGGGGCGTGGAGAAT 62.115 66.667 0.00 0.00 39.62 2.40
2731 4062 2.677228 CCTGGGGCGTGGAGAATT 59.323 61.111 0.00 0.00 0.00 2.17
2732 4063 1.452108 CCTGGGGCGTGGAGAATTC 60.452 63.158 0.00 0.00 0.00 2.17
2733 4064 1.452108 CTGGGGCGTGGAGAATTCC 60.452 63.158 0.65 0.00 44.31 3.01
2734 4065 1.915078 CTGGGGCGTGGAGAATTCCT 61.915 60.000 0.65 0.00 44.36 3.36
2735 4066 0.619255 TGGGGCGTGGAGAATTCCTA 60.619 55.000 0.65 0.00 44.36 2.94
2736 4067 0.106894 GGGGCGTGGAGAATTCCTAG 59.893 60.000 0.65 0.00 44.36 3.02
2737 4068 0.533085 GGGCGTGGAGAATTCCTAGC 60.533 60.000 0.65 1.39 44.36 3.42
2738 4069 0.466124 GGCGTGGAGAATTCCTAGCT 59.534 55.000 0.65 0.00 44.36 3.32
2739 4070 1.687123 GGCGTGGAGAATTCCTAGCTA 59.313 52.381 0.65 0.00 44.36 3.32
2740 4071 2.546162 GGCGTGGAGAATTCCTAGCTAC 60.546 54.545 0.65 0.00 44.36 3.58
2741 4072 2.859032 GCGTGGAGAATTCCTAGCTACG 60.859 54.545 14.95 14.95 44.36 3.51
2742 4073 2.287668 CGTGGAGAATTCCTAGCTACGG 60.288 54.545 0.65 0.00 44.36 4.02
2743 4074 1.687123 TGGAGAATTCCTAGCTACGGC 59.313 52.381 0.65 0.00 44.36 5.68
2744 4075 1.687123 GGAGAATTCCTAGCTACGGCA 59.313 52.381 0.65 0.00 40.58 5.69
2745 4076 2.546162 GGAGAATTCCTAGCTACGGCAC 60.546 54.545 0.65 0.00 40.58 5.01
2746 4077 2.362717 GAGAATTCCTAGCTACGGCACT 59.637 50.000 0.65 0.00 41.70 4.40
2747 4078 2.101582 AGAATTCCTAGCTACGGCACTG 59.898 50.000 0.65 0.00 41.70 3.66
2748 4079 0.753262 ATTCCTAGCTACGGCACTGG 59.247 55.000 0.00 0.00 41.70 4.00
2749 4080 1.956629 TTCCTAGCTACGGCACTGGC 61.957 60.000 0.00 0.00 41.70 4.85
2750 4081 2.427245 CCTAGCTACGGCACTGGCT 61.427 63.158 0.52 0.00 41.70 4.75
2751 4082 1.107538 CCTAGCTACGGCACTGGCTA 61.108 60.000 0.52 0.00 41.70 3.93
2752 4083 0.962489 CTAGCTACGGCACTGGCTAT 59.038 55.000 0.52 0.00 41.70 2.97
2753 4084 0.959553 TAGCTACGGCACTGGCTATC 59.040 55.000 0.52 0.00 41.70 2.08
2754 4085 1.043116 AGCTACGGCACTGGCTATCA 61.043 55.000 0.52 0.00 41.70 2.15
2755 4086 2.965964 AGCTACGGCACTGGCTATCAG 61.966 57.143 0.52 0.00 41.71 2.90
2768 4099 3.855689 GCTATCAGCCATTGTTGTTGT 57.144 42.857 0.00 0.00 34.48 3.32
2769 4100 3.762779 GCTATCAGCCATTGTTGTTGTC 58.237 45.455 0.00 0.00 34.48 3.18
2770 4101 3.191162 GCTATCAGCCATTGTTGTTGTCA 59.809 43.478 0.00 0.00 34.48 3.58
2771 4102 3.648339 ATCAGCCATTGTTGTTGTCAC 57.352 42.857 0.00 0.00 0.00 3.67
2772 4103 1.680735 TCAGCCATTGTTGTTGTCACC 59.319 47.619 0.00 0.00 0.00 4.02
2773 4104 1.408340 CAGCCATTGTTGTTGTCACCA 59.592 47.619 0.00 0.00 0.00 4.17
2774 4105 1.408702 AGCCATTGTTGTTGTCACCAC 59.591 47.619 0.00 0.00 0.00 4.16
2775 4106 1.863624 GCCATTGTTGTTGTCACCACG 60.864 52.381 0.00 0.00 0.00 4.94
2776 4107 1.476074 CATTGTTGTTGTCACCACGC 58.524 50.000 0.00 0.00 0.00 5.34
2777 4108 1.065401 CATTGTTGTTGTCACCACGCT 59.935 47.619 0.00 0.00 0.00 5.07
2778 4109 1.169577 TTGTTGTTGTCACCACGCTT 58.830 45.000 0.00 0.00 0.00 4.68
2779 4110 0.730265 TGTTGTTGTCACCACGCTTC 59.270 50.000 0.00 0.00 0.00 3.86
2780 4111 1.014352 GTTGTTGTCACCACGCTTCT 58.986 50.000 0.00 0.00 0.00 2.85
2781 4112 1.400494 GTTGTTGTCACCACGCTTCTT 59.600 47.619 0.00 0.00 0.00 2.52
2782 4113 1.295792 TGTTGTCACCACGCTTCTTC 58.704 50.000 0.00 0.00 0.00 2.87
2783 4114 1.295792 GTTGTCACCACGCTTCTTCA 58.704 50.000 0.00 0.00 0.00 3.02
2784 4115 1.668751 GTTGTCACCACGCTTCTTCAA 59.331 47.619 0.00 0.00 0.00 2.69
2785 4116 2.254546 TGTCACCACGCTTCTTCAAT 57.745 45.000 0.00 0.00 0.00 2.57
2786 4117 2.571212 TGTCACCACGCTTCTTCAATT 58.429 42.857 0.00 0.00 0.00 2.32
2787 4118 2.948979 TGTCACCACGCTTCTTCAATTT 59.051 40.909 0.00 0.00 0.00 1.82
2788 4119 4.130857 TGTCACCACGCTTCTTCAATTTA 58.869 39.130 0.00 0.00 0.00 1.40
2789 4120 4.759693 TGTCACCACGCTTCTTCAATTTAT 59.240 37.500 0.00 0.00 0.00 1.40
2790 4121 5.106712 TGTCACCACGCTTCTTCAATTTATC 60.107 40.000 0.00 0.00 0.00 1.75
2791 4122 5.122396 GTCACCACGCTTCTTCAATTTATCT 59.878 40.000 0.00 0.00 0.00 1.98
2792 4123 5.351465 TCACCACGCTTCTTCAATTTATCTC 59.649 40.000 0.00 0.00 0.00 2.75
2793 4124 4.330074 ACCACGCTTCTTCAATTTATCTCG 59.670 41.667 0.00 0.00 0.00 4.04
2794 4125 4.330074 CCACGCTTCTTCAATTTATCTCGT 59.670 41.667 0.00 0.00 0.00 4.18
2795 4126 5.251081 CACGCTTCTTCAATTTATCTCGTG 58.749 41.667 0.00 0.00 37.76 4.35
2796 4127 4.330074 ACGCTTCTTCAATTTATCTCGTGG 59.670 41.667 0.00 0.00 0.00 4.94
2797 4128 4.592179 GCTTCTTCAATTTATCTCGTGGC 58.408 43.478 0.00 0.00 0.00 5.01
2798 4129 4.333926 GCTTCTTCAATTTATCTCGTGGCT 59.666 41.667 0.00 0.00 0.00 4.75
2799 4130 5.523916 GCTTCTTCAATTTATCTCGTGGCTA 59.476 40.000 0.00 0.00 0.00 3.93
2800 4131 6.510317 GCTTCTTCAATTTATCTCGTGGCTAC 60.510 42.308 0.00 0.00 0.00 3.58
2801 4132 5.972935 TCTTCAATTTATCTCGTGGCTACA 58.027 37.500 0.00 0.00 0.00 2.74
2802 4133 6.403049 TCTTCAATTTATCTCGTGGCTACAA 58.597 36.000 0.00 0.00 0.00 2.41
2803 4134 7.047891 TCTTCAATTTATCTCGTGGCTACAAT 58.952 34.615 0.00 0.00 0.00 2.71
2804 4135 8.201464 TCTTCAATTTATCTCGTGGCTACAATA 58.799 33.333 0.00 0.00 0.00 1.90
2805 4136 7.709269 TCAATTTATCTCGTGGCTACAATAC 57.291 36.000 0.00 0.00 0.00 1.89
2806 4137 6.704493 TCAATTTATCTCGTGGCTACAATACC 59.296 38.462 0.00 0.00 0.00 2.73
2807 4138 5.601583 TTTATCTCGTGGCTACAATACCA 57.398 39.130 0.00 0.00 0.00 3.25
2808 4139 5.801531 TTATCTCGTGGCTACAATACCAT 57.198 39.130 0.00 0.00 38.46 3.55
2809 4140 3.452755 TCTCGTGGCTACAATACCATG 57.547 47.619 0.00 0.00 43.16 3.66
2810 4141 2.764010 TCTCGTGGCTACAATACCATGT 59.236 45.455 0.00 0.00 42.52 3.21
2811 4142 3.196901 TCTCGTGGCTACAATACCATGTT 59.803 43.478 0.00 0.00 42.52 2.71
2812 4143 3.527533 TCGTGGCTACAATACCATGTTC 58.472 45.455 0.00 0.00 42.52 3.18
2813 4144 3.196901 TCGTGGCTACAATACCATGTTCT 59.803 43.478 0.00 0.00 42.52 3.01
2814 4145 3.938963 CGTGGCTACAATACCATGTTCTT 59.061 43.478 0.00 0.00 38.46 2.52
2815 4146 4.034048 CGTGGCTACAATACCATGTTCTTC 59.966 45.833 0.00 0.00 38.46 2.87
2816 4147 4.941263 GTGGCTACAATACCATGTTCTTCA 59.059 41.667 0.00 0.00 38.46 3.02
2817 4148 4.941263 TGGCTACAATACCATGTTCTTCAC 59.059 41.667 0.00 0.00 34.75 3.18
2818 4149 4.941263 GGCTACAATACCATGTTCTTCACA 59.059 41.667 0.00 0.00 40.71 3.58
2819 4150 5.414454 GGCTACAATACCATGTTCTTCACAA 59.586 40.000 0.00 0.00 39.50 3.33
2820 4151 6.403636 GGCTACAATACCATGTTCTTCACAAG 60.404 42.308 0.00 0.00 39.50 3.16
2822 4153 4.766891 ACAATACCATGTTCTTCACAAGGG 59.233 41.667 1.65 0.00 46.97 3.95
2823 4154 4.927267 ATACCATGTTCTTCACAAGGGA 57.073 40.909 1.65 0.00 46.97 4.20
2824 4155 3.593442 ACCATGTTCTTCACAAGGGAA 57.407 42.857 1.65 0.00 46.97 3.97
2825 4156 4.118168 ACCATGTTCTTCACAAGGGAAT 57.882 40.909 1.65 0.00 46.97 3.01
2826 4157 3.828451 ACCATGTTCTTCACAAGGGAATG 59.172 43.478 1.65 0.00 46.97 2.67
2827 4158 3.828451 CCATGTTCTTCACAAGGGAATGT 59.172 43.478 0.00 0.00 40.15 2.71
2828 4159 4.281688 CCATGTTCTTCACAAGGGAATGTT 59.718 41.667 0.00 0.00 40.15 2.71
2829 4160 5.476599 CCATGTTCTTCACAAGGGAATGTTA 59.523 40.000 0.00 0.00 40.15 2.41
2830 4161 6.153340 CCATGTTCTTCACAAGGGAATGTTAT 59.847 38.462 0.00 0.00 40.15 1.89
2831 4162 6.573664 TGTTCTTCACAAGGGAATGTTATG 57.426 37.500 0.00 0.00 29.87 1.90
2832 4163 6.068010 TGTTCTTCACAAGGGAATGTTATGT 58.932 36.000 0.00 0.00 29.87 2.29
2833 4164 6.549364 TGTTCTTCACAAGGGAATGTTATGTT 59.451 34.615 0.00 0.00 29.87 2.71
2834 4165 6.573664 TCTTCACAAGGGAATGTTATGTTG 57.426 37.500 0.00 0.00 0.00 3.33
2835 4166 4.782019 TCACAAGGGAATGTTATGTTGC 57.218 40.909 0.00 0.00 0.00 4.17
2836 4167 3.509575 TCACAAGGGAATGTTATGTTGCC 59.490 43.478 0.00 0.00 37.33 4.52
2837 4168 3.257873 CACAAGGGAATGTTATGTTGCCA 59.742 43.478 0.00 0.00 39.29 4.92
2838 4169 4.081531 CACAAGGGAATGTTATGTTGCCAT 60.082 41.667 0.00 0.00 39.29 4.40
2839 4170 4.160252 ACAAGGGAATGTTATGTTGCCATC 59.840 41.667 0.00 0.00 39.29 3.51
2840 4171 3.979911 AGGGAATGTTATGTTGCCATCA 58.020 40.909 0.00 0.00 39.29 3.07
2841 4172 3.701040 AGGGAATGTTATGTTGCCATCAC 59.299 43.478 0.00 0.00 39.29 3.06
2842 4173 3.701040 GGGAATGTTATGTTGCCATCACT 59.299 43.478 0.00 0.00 37.07 3.41
2843 4174 4.160252 GGGAATGTTATGTTGCCATCACTT 59.840 41.667 0.00 0.00 37.07 3.16
2844 4175 5.343249 GGAATGTTATGTTGCCATCACTTC 58.657 41.667 0.00 0.00 32.29 3.01
2845 4176 5.105797 GGAATGTTATGTTGCCATCACTTCA 60.106 40.000 0.00 0.00 32.29 3.02
2846 4177 5.981088 ATGTTATGTTGCCATCACTTCAA 57.019 34.783 0.00 0.00 32.29 2.69
2847 4178 5.375417 TGTTATGTTGCCATCACTTCAAG 57.625 39.130 0.00 0.00 32.29 3.02
2848 4179 4.826733 TGTTATGTTGCCATCACTTCAAGT 59.173 37.500 0.00 0.00 32.29 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 2.440796 CCACCTGCCCGCATCAAT 60.441 61.111 0.00 0.00 0.00 2.57
270 273 0.385751 GTCTTCATCGCCCGATCTCA 59.614 55.000 0.00 0.00 31.62 3.27
429 455 2.436646 CGAAATGGCCGCCTCAGT 60.437 61.111 11.61 0.00 0.00 3.41
453 480 3.057596 TCATCGTTGCCAAACAGAAATCC 60.058 43.478 0.00 0.00 35.94 3.01
742 786 5.497474 AGCTAAAACCGATACAATCCAACT 58.503 37.500 0.00 0.00 0.00 3.16
848 895 5.457140 TCCAGCGTATTCACAAACATTTTC 58.543 37.500 0.00 0.00 0.00 2.29
966 1013 2.531206 CTAGGTAGCGAGTGAGTTTGC 58.469 52.381 0.00 0.00 0.00 3.68
992 1040 3.372676 GACGACGCCATTGCTGCTG 62.373 63.158 0.00 0.00 34.43 4.41
1053 1101 2.756691 TGTAGGCCGCCGCTTCTA 60.757 61.111 3.05 0.00 34.44 2.10
1099 1147 4.803908 GGCTGGCCCCTGCACTAC 62.804 72.222 16.44 0.00 41.69 2.73
1218 1266 0.036732 GCCAGATGGACTTGGTGACA 59.963 55.000 2.18 0.00 37.39 3.58
1303 1380 5.444218 CGTAAGTTTCAGACATAACCGAAGC 60.444 44.000 0.00 0.00 0.00 3.86
1398 1475 0.886938 TTGCCTTCATGGACGCGAAA 60.887 50.000 15.93 0.00 38.35 3.46
1419 1496 1.299976 GAGACTGGGGATTGCCGTT 59.700 57.895 0.00 0.00 33.83 4.44
1430 1507 1.480137 GAGATCACTGGTGGAGACTGG 59.520 57.143 0.00 0.00 0.00 4.00
1431 1508 1.480137 GGAGATCACTGGTGGAGACTG 59.520 57.143 0.00 0.00 0.00 3.51
1432 1509 1.077828 TGGAGATCACTGGTGGAGACT 59.922 52.381 0.00 0.00 0.00 3.24
1433 1510 1.480137 CTGGAGATCACTGGTGGAGAC 59.520 57.143 0.00 0.00 0.00 3.36
1434 1511 1.359130 TCTGGAGATCACTGGTGGAGA 59.641 52.381 0.00 0.00 0.00 3.71
1435 1512 1.755959 CTCTGGAGATCACTGGTGGAG 59.244 57.143 0.00 0.00 0.00 3.86
1436 1513 1.077828 ACTCTGGAGATCACTGGTGGA 59.922 52.381 4.49 0.00 0.00 4.02
1571 1648 1.533338 CGATCGTAGTACCAGTGCACC 60.533 57.143 14.63 0.00 0.00 5.01
1596 1673 3.207669 GGGAAGAGGCTGCATGCG 61.208 66.667 14.09 9.16 44.05 4.73
1847 1929 1.519455 CGGCTACTTGGCTTCCTCG 60.519 63.158 0.00 0.00 39.32 4.63
1862 1944 2.573609 ATACGCTTGGGTCTCACGGC 62.574 60.000 0.00 0.00 0.00 5.68
1941 2023 3.230976 TGCCACTGAAGACTGAAGAGTA 58.769 45.455 0.00 0.00 30.16 2.59
2058 2187 5.150342 TGCACGAATATTGGTGTTAATCG 57.850 39.130 25.47 8.85 38.86 3.34
2143 2272 5.523552 CGGAGTGCATATAAGTCATGTCAAA 59.476 40.000 0.00 0.00 0.00 2.69
2150 2279 3.958147 TCTTCCGGAGTGCATATAAGTCA 59.042 43.478 3.34 0.00 0.00 3.41
2176 2305 4.900635 GGATGACTTCCGCAACATATTT 57.099 40.909 0.00 0.00 33.93 1.40
2232 2361 6.831976 AGAGGTTCCTCATATTATGTCCAAC 58.168 40.000 19.28 5.18 35.67 3.77
2238 2367 6.439636 TCCCAAGAGGTTCCTCATATTATG 57.560 41.667 19.28 8.85 35.67 1.90
2292 2424 8.703336 GCTCCACAAGAATTTTACAAGAATTTC 58.297 33.333 0.00 0.00 0.00 2.17
2311 2443 8.537728 AGAATTGGATTTATAAATGCTCCACA 57.462 30.769 24.58 13.70 37.58 4.17
2381 2513 5.878332 AGACACGTGCAATATTTTGATGA 57.122 34.783 17.22 0.00 34.60 2.92
2431 2563 9.726438 AGCACAACTTAATGTTAAATCTACTCT 57.274 29.630 0.00 0.00 37.07 3.24
2455 2587 4.281525 TGTTTGACTAAACCGAAACAGC 57.718 40.909 0.00 0.00 44.37 4.40
2546 3877 2.689983 CAAGGGAGGTGGAACATTATGC 59.310 50.000 0.00 0.00 44.52 3.14
2604 3935 2.902486 CCCTGCTGATAGCTGAGGAATA 59.098 50.000 8.95 0.00 41.94 1.75
2620 3951 1.301795 GGCTTATCTACGCCCCTGC 60.302 63.158 0.00 0.00 40.43 4.85
2625 3956 1.371558 CCTGGGGCTTATCTACGCC 59.628 63.158 0.00 0.00 45.55 5.68
2626 3957 1.301795 GCCTGGGGCTTATCTACGC 60.302 63.158 0.80 0.00 46.69 4.42
2643 3974 3.489513 AATCCTGGCCCGGGTAGC 61.490 66.667 24.63 7.63 0.00 3.58
2644 3975 1.052124 TACAATCCTGGCCCGGGTAG 61.052 60.000 24.63 20.22 0.00 3.18
2645 3976 1.003182 TACAATCCTGGCCCGGGTA 59.997 57.895 24.63 11.12 0.00 3.69
2646 3977 2.285818 TACAATCCTGGCCCGGGT 60.286 61.111 24.63 2.34 0.00 5.28
2647 3978 2.510906 CTACAATCCTGGCCCGGG 59.489 66.667 19.09 19.09 0.00 5.73
2648 3979 2.203209 GCTACAATCCTGGCCCGG 60.203 66.667 6.92 6.92 0.00 5.73
2649 3980 1.077787 TTGCTACAATCCTGGCCCG 60.078 57.895 0.00 0.00 0.00 6.13
2650 3981 0.323360 TGTTGCTACAATCCTGGCCC 60.323 55.000 0.00 0.00 0.00 5.80
2651 3982 1.098050 CTGTTGCTACAATCCTGGCC 58.902 55.000 1.93 0.00 32.92 5.36
2652 3983 1.826385 ACTGTTGCTACAATCCTGGC 58.174 50.000 1.93 0.00 32.92 4.85
2653 3984 4.769688 TGATACTGTTGCTACAATCCTGG 58.230 43.478 1.93 0.00 32.92 4.45
2654 3985 7.212976 AGTATGATACTGTTGCTACAATCCTG 58.787 38.462 3.96 0.00 37.69 3.86
2655 3986 7.366847 AGTATGATACTGTTGCTACAATCCT 57.633 36.000 3.96 0.09 37.69 3.24
2679 4010 1.272092 ACGGTGGGTACTGTAGCTACA 60.272 52.381 27.04 24.63 44.46 2.74
2680 4011 1.467920 ACGGTGGGTACTGTAGCTAC 58.532 55.000 20.83 20.83 44.46 3.58
2681 4012 3.016736 GTTACGGTGGGTACTGTAGCTA 58.983 50.000 15.74 7.92 46.37 3.32
2682 4013 1.821136 GTTACGGTGGGTACTGTAGCT 59.179 52.381 15.74 0.00 46.37 3.32
2683 4014 1.821136 AGTTACGGTGGGTACTGTAGC 59.179 52.381 8.46 8.46 46.37 3.58
2684 4015 3.084039 TGAGTTACGGTGGGTACTGTAG 58.916 50.000 0.00 0.00 46.37 2.74
2685 4016 3.153369 TGAGTTACGGTGGGTACTGTA 57.847 47.619 0.00 0.00 44.46 2.74
2687 4018 3.323243 CTTTGAGTTACGGTGGGTACTG 58.677 50.000 0.00 0.00 39.18 2.74
2688 4019 2.301009 CCTTTGAGTTACGGTGGGTACT 59.699 50.000 0.00 0.00 0.00 2.73
2689 4020 2.691927 CCTTTGAGTTACGGTGGGTAC 58.308 52.381 0.00 0.00 0.00 3.34
2690 4021 1.002315 GCCTTTGAGTTACGGTGGGTA 59.998 52.381 0.00 0.00 0.00 3.69
2691 4022 0.250597 GCCTTTGAGTTACGGTGGGT 60.251 55.000 0.00 0.00 0.00 4.51
2692 4023 0.036306 AGCCTTTGAGTTACGGTGGG 59.964 55.000 0.00 0.00 0.00 4.61
2693 4024 2.618053 CTAGCCTTTGAGTTACGGTGG 58.382 52.381 0.00 0.00 0.00 4.61
2694 4025 2.000447 GCTAGCCTTTGAGTTACGGTG 59.000 52.381 2.29 0.00 0.00 4.94
2695 4026 1.066358 GGCTAGCCTTTGAGTTACGGT 60.066 52.381 27.17 0.00 0.00 4.83
2696 4027 1.207329 AGGCTAGCCTTTGAGTTACGG 59.793 52.381 31.30 0.00 45.70 4.02
2697 4028 2.271800 CAGGCTAGCCTTTGAGTTACG 58.728 52.381 34.20 15.29 45.70 3.18
2698 4029 2.633488 CCAGGCTAGCCTTTGAGTTAC 58.367 52.381 34.20 2.56 45.70 2.50
2699 4030 1.559682 CCCAGGCTAGCCTTTGAGTTA 59.440 52.381 34.20 0.00 45.70 2.24
2700 4031 0.329596 CCCAGGCTAGCCTTTGAGTT 59.670 55.000 34.20 8.78 45.70 3.01
2701 4032 1.566298 CCCCAGGCTAGCCTTTGAGT 61.566 60.000 34.20 9.63 45.70 3.41
2702 4033 1.225704 CCCCAGGCTAGCCTTTGAG 59.774 63.158 34.20 21.63 45.70 3.02
2703 4034 2.983879 GCCCCAGGCTAGCCTTTGA 61.984 63.158 34.20 0.00 45.70 2.69
2704 4035 2.440980 GCCCCAGGCTAGCCTTTG 60.441 66.667 34.20 25.59 45.70 2.77
2713 4044 3.645268 AATTCTCCACGCCCCAGGC 62.645 63.158 0.00 0.00 46.75 4.85
2714 4045 1.452108 GAATTCTCCACGCCCCAGG 60.452 63.158 0.00 0.00 0.00 4.45
2715 4046 1.452108 GGAATTCTCCACGCCCCAG 60.452 63.158 5.23 0.00 41.96 4.45
2716 4047 0.619255 TAGGAATTCTCCACGCCCCA 60.619 55.000 5.23 0.00 45.24 4.96
2717 4048 0.106894 CTAGGAATTCTCCACGCCCC 59.893 60.000 5.23 0.00 45.24 5.80
2718 4049 0.533085 GCTAGGAATTCTCCACGCCC 60.533 60.000 5.23 0.00 45.24 6.13
2719 4050 0.466124 AGCTAGGAATTCTCCACGCC 59.534 55.000 5.23 0.00 45.24 5.68
2720 4051 2.745102 GTAGCTAGGAATTCTCCACGC 58.255 52.381 5.23 2.04 45.24 5.34
2721 4052 2.287668 CCGTAGCTAGGAATTCTCCACG 60.288 54.545 14.94 2.69 45.24 4.94
2722 4053 2.546162 GCCGTAGCTAGGAATTCTCCAC 60.546 54.545 14.94 0.00 39.20 4.02
2723 4054 1.687123 GCCGTAGCTAGGAATTCTCCA 59.313 52.381 14.94 0.00 39.20 3.86
2724 4055 1.687123 TGCCGTAGCTAGGAATTCTCC 59.313 52.381 14.94 0.00 40.24 3.71
2725 4056 2.362717 AGTGCCGTAGCTAGGAATTCTC 59.637 50.000 14.94 0.00 40.80 2.87
2726 4057 2.101582 CAGTGCCGTAGCTAGGAATTCT 59.898 50.000 14.94 5.12 40.80 2.40
2727 4058 2.474816 CAGTGCCGTAGCTAGGAATTC 58.525 52.381 14.94 0.00 40.80 2.17
2728 4059 1.139058 CCAGTGCCGTAGCTAGGAATT 59.861 52.381 14.94 0.00 40.80 2.17
2729 4060 0.753262 CCAGTGCCGTAGCTAGGAAT 59.247 55.000 14.94 0.00 40.80 3.01
2730 4061 1.956629 GCCAGTGCCGTAGCTAGGAA 61.957 60.000 14.94 0.48 40.80 3.36
2731 4062 2.423898 GCCAGTGCCGTAGCTAGGA 61.424 63.158 14.94 0.00 40.80 2.94
2732 4063 1.107538 TAGCCAGTGCCGTAGCTAGG 61.108 60.000 6.46 6.46 40.80 3.02
2733 4064 0.962489 ATAGCCAGTGCCGTAGCTAG 59.038 55.000 0.00 0.00 40.88 3.42
2734 4065 0.959553 GATAGCCAGTGCCGTAGCTA 59.040 55.000 0.00 0.00 41.72 3.32
2735 4066 1.043116 TGATAGCCAGTGCCGTAGCT 61.043 55.000 0.00 0.00 40.80 3.32
2736 4067 0.598680 CTGATAGCCAGTGCCGTAGC 60.599 60.000 0.00 0.00 38.10 3.58
2737 4068 0.598680 GCTGATAGCCAGTGCCGTAG 60.599 60.000 0.00 0.00 44.71 3.51
2738 4069 1.441729 GCTGATAGCCAGTGCCGTA 59.558 57.895 0.00 0.00 44.71 4.02
2739 4070 2.187946 GCTGATAGCCAGTGCCGT 59.812 61.111 0.00 0.00 44.71 5.68
2748 4079 3.191162 TGACAACAACAATGGCTGATAGC 59.809 43.478 0.00 0.00 41.46 2.97
2749 4080 4.379813 GGTGACAACAACAATGGCTGATAG 60.380 45.833 0.00 0.00 33.34 2.08
2750 4081 3.505680 GGTGACAACAACAATGGCTGATA 59.494 43.478 0.00 0.00 33.34 2.15
2751 4082 2.297033 GGTGACAACAACAATGGCTGAT 59.703 45.455 0.00 0.00 33.34 2.90
2752 4083 1.680735 GGTGACAACAACAATGGCTGA 59.319 47.619 0.00 0.00 33.34 4.26
2753 4084 1.408340 TGGTGACAACAACAATGGCTG 59.592 47.619 0.00 0.00 41.04 4.85
2754 4085 1.408702 GTGGTGACAACAACAATGGCT 59.591 47.619 0.00 0.00 45.71 4.75
2755 4086 1.851658 GTGGTGACAACAACAATGGC 58.148 50.000 0.00 0.00 45.71 4.40
2756 4087 1.863624 GCGTGGTGACAACAACAATGG 60.864 52.381 0.00 0.00 45.71 3.16
2757 4088 1.065401 AGCGTGGTGACAACAACAATG 59.935 47.619 0.00 0.00 45.71 2.82
2758 4089 1.388547 AGCGTGGTGACAACAACAAT 58.611 45.000 0.00 0.00 45.71 2.71
2759 4090 1.131504 GAAGCGTGGTGACAACAACAA 59.868 47.619 0.00 0.00 45.71 2.83
2760 4091 0.730265 GAAGCGTGGTGACAACAACA 59.270 50.000 0.00 0.00 46.06 3.33
2761 4092 1.014352 AGAAGCGTGGTGACAACAAC 58.986 50.000 0.00 0.00 46.06 3.32
2762 4093 1.668751 GAAGAAGCGTGGTGACAACAA 59.331 47.619 0.00 0.00 46.06 2.83
2763 4094 1.295792 GAAGAAGCGTGGTGACAACA 58.704 50.000 0.00 0.00 46.06 3.33
2764 4095 1.295792 TGAAGAAGCGTGGTGACAAC 58.704 50.000 0.00 0.00 46.06 3.32
2765 4096 2.031258 TTGAAGAAGCGTGGTGACAA 57.969 45.000 0.00 0.00 46.06 3.18
2766 4097 2.254546 ATTGAAGAAGCGTGGTGACA 57.745 45.000 0.00 0.00 38.70 3.58
2767 4098 3.626028 AAATTGAAGAAGCGTGGTGAC 57.374 42.857 0.00 0.00 0.00 3.67
2768 4099 5.245531 AGATAAATTGAAGAAGCGTGGTGA 58.754 37.500 0.00 0.00 0.00 4.02
2769 4100 5.551760 AGATAAATTGAAGAAGCGTGGTG 57.448 39.130 0.00 0.00 0.00 4.17
2770 4101 4.330074 CGAGATAAATTGAAGAAGCGTGGT 59.670 41.667 0.00 0.00 0.00 4.16
2771 4102 4.330074 ACGAGATAAATTGAAGAAGCGTGG 59.670 41.667 0.00 0.00 0.00 4.94
2772 4103 5.251081 CACGAGATAAATTGAAGAAGCGTG 58.749 41.667 0.00 0.00 39.19 5.34
2773 4104 4.330074 CCACGAGATAAATTGAAGAAGCGT 59.670 41.667 0.00 0.00 0.00 5.07
2774 4105 4.783450 GCCACGAGATAAATTGAAGAAGCG 60.783 45.833 0.00 0.00 0.00 4.68
2775 4106 4.333926 AGCCACGAGATAAATTGAAGAAGC 59.666 41.667 0.00 0.00 0.00 3.86
2776 4107 6.535150 TGTAGCCACGAGATAAATTGAAGAAG 59.465 38.462 0.00 0.00 0.00 2.85
2777 4108 6.403049 TGTAGCCACGAGATAAATTGAAGAA 58.597 36.000 0.00 0.00 0.00 2.52
2778 4109 5.972935 TGTAGCCACGAGATAAATTGAAGA 58.027 37.500 0.00 0.00 0.00 2.87
2779 4110 6.662414 TTGTAGCCACGAGATAAATTGAAG 57.338 37.500 0.00 0.00 0.00 3.02
2780 4111 7.225931 GGTATTGTAGCCACGAGATAAATTGAA 59.774 37.037 0.00 0.00 0.00 2.69
2781 4112 6.704493 GGTATTGTAGCCACGAGATAAATTGA 59.296 38.462 0.00 0.00 0.00 2.57
2782 4113 6.481976 TGGTATTGTAGCCACGAGATAAATTG 59.518 38.462 0.00 0.00 0.00 2.32
2783 4114 6.588204 TGGTATTGTAGCCACGAGATAAATT 58.412 36.000 0.00 0.00 0.00 1.82
2784 4115 6.169557 TGGTATTGTAGCCACGAGATAAAT 57.830 37.500 0.00 0.00 0.00 1.40
2785 4116 5.601583 TGGTATTGTAGCCACGAGATAAA 57.398 39.130 0.00 0.00 0.00 1.40
2786 4117 5.069914 ACATGGTATTGTAGCCACGAGATAA 59.930 40.000 0.00 0.00 37.62 1.75
2787 4118 4.587262 ACATGGTATTGTAGCCACGAGATA 59.413 41.667 0.00 0.00 37.62 1.98
2788 4119 3.388024 ACATGGTATTGTAGCCACGAGAT 59.612 43.478 0.00 0.00 37.62 2.75
2789 4120 2.764010 ACATGGTATTGTAGCCACGAGA 59.236 45.455 0.00 0.00 37.62 4.04
2790 4121 3.179443 ACATGGTATTGTAGCCACGAG 57.821 47.619 0.00 0.00 37.62 4.18
2791 4122 3.196901 AGAACATGGTATTGTAGCCACGA 59.803 43.478 0.00 0.00 37.62 4.35
2792 4123 3.531538 AGAACATGGTATTGTAGCCACG 58.468 45.455 0.00 0.00 37.62 4.94
2793 4124 4.941263 TGAAGAACATGGTATTGTAGCCAC 59.059 41.667 0.00 0.00 37.62 5.01
2794 4125 4.941263 GTGAAGAACATGGTATTGTAGCCA 59.059 41.667 0.00 0.00 39.33 4.75
2795 4126 4.941263 TGTGAAGAACATGGTATTGTAGCC 59.059 41.667 0.00 0.00 32.36 3.93
2796 4127 6.403636 CCTTGTGAAGAACATGGTATTGTAGC 60.404 42.308 0.00 0.00 45.10 3.58
2797 4128 7.076842 CCTTGTGAAGAACATGGTATTGTAG 57.923 40.000 0.00 0.00 45.10 2.74
2799 4130 5.964958 CCTTGTGAAGAACATGGTATTGT 57.035 39.130 0.00 0.00 45.10 2.71
2806 4137 5.458041 AACATTCCCTTGTGAAGAACATG 57.542 39.130 0.00 0.00 38.99 3.21
2807 4138 6.721208 ACATAACATTCCCTTGTGAAGAACAT 59.279 34.615 0.00 0.00 38.99 2.71
2808 4139 6.068010 ACATAACATTCCCTTGTGAAGAACA 58.932 36.000 0.00 0.00 36.85 3.18
2809 4140 6.575162 ACATAACATTCCCTTGTGAAGAAC 57.425 37.500 0.00 0.00 0.00 3.01
2810 4141 6.516527 GCAACATAACATTCCCTTGTGAAGAA 60.517 38.462 0.00 0.00 0.00 2.52
2811 4142 5.048083 GCAACATAACATTCCCTTGTGAAGA 60.048 40.000 0.00 0.00 0.00 2.87
2812 4143 5.163513 GCAACATAACATTCCCTTGTGAAG 58.836 41.667 0.00 0.00 0.00 3.02
2813 4144 4.021544 GGCAACATAACATTCCCTTGTGAA 60.022 41.667 0.00 0.00 0.00 3.18
2814 4145 3.509575 GGCAACATAACATTCCCTTGTGA 59.490 43.478 0.00 0.00 0.00 3.58
2815 4146 3.257873 TGGCAACATAACATTCCCTTGTG 59.742 43.478 0.00 0.00 46.17 3.33
2816 4147 3.505386 TGGCAACATAACATTCCCTTGT 58.495 40.909 0.00 0.00 46.17 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.