Multiple sequence alignment - TraesCS6D01G286200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G286200 chr6D 100.000 3570 0 0 1 3570 394723160 394726729 0.000000e+00 6593.0
1 TraesCS6D01G286200 chr6D 84.848 660 76 14 2919 3570 304993893 304993250 0.000000e+00 643.0
2 TraesCS6D01G286200 chr6D 83.460 659 80 15 2919 3570 305169518 305170154 1.430000e-163 586.0
3 TraesCS6D01G286200 chr6B 94.499 2127 78 17 562 2668 590914073 590911966 0.000000e+00 3243.0
4 TraesCS6D01G286200 chr6B 93.381 559 32 5 2860 3417 422352293 422351739 0.000000e+00 822.0
5 TraesCS6D01G286200 chr6B 93.158 380 19 3 2 375 590916205 590915827 5.210000e-153 551.0
6 TraesCS6D01G286200 chr6B 90.407 344 25 4 2757 3095 422352635 422352295 2.530000e-121 446.0
7 TraesCS6D01G286200 chr6B 91.837 196 7 4 372 567 590914631 590914445 7.600000e-67 265.0
8 TraesCS6D01G286200 chr6B 84.211 114 6 5 2671 2773 698111285 698111173 2.270000e-17 100.0
9 TraesCS6D01G286200 chr6A 92.684 2228 108 37 445 2656 541229775 541227587 0.000000e+00 3160.0
10 TraesCS6D01G286200 chr6A 94.048 252 13 1 2422 2671 541231787 541231536 7.230000e-102 381.0
11 TraesCS6D01G286200 chr6A 95.455 88 4 0 2339 2426 541234631 541234544 1.340000e-29 141.0
12 TraesCS6D01G286200 chr7B 90.533 919 60 12 2671 3570 584091056 584090146 0.000000e+00 1190.0
13 TraesCS6D01G286200 chr7B 78.035 1079 199 24 1124 2180 105884222 105883160 0.000000e+00 645.0
14 TraesCS6D01G286200 chr4B 89.719 924 62 20 2671 3570 216111241 216110327 0.000000e+00 1149.0
15 TraesCS6D01G286200 chr1B 89.189 925 67 13 2671 3570 92556892 92555976 0.000000e+00 1123.0
16 TraesCS6D01G286200 chr1B 92.308 52 3 1 2679 2730 321030110 321030160 4.940000e-09 73.1
17 TraesCS6D01G286200 chr3A 93.450 687 42 3 2885 3570 729939427 729940111 0.000000e+00 1016.0
18 TraesCS6D01G286200 chr2A 92.066 668 42 7 2754 3414 626836838 626837501 0.000000e+00 929.0
19 TraesCS6D01G286200 chr7D 81.965 926 103 38 2671 3570 70096506 70097393 0.000000e+00 726.0
20 TraesCS6D01G286200 chr7D 77.676 1196 210 36 1021 2180 140805855 140804681 0.000000e+00 676.0
21 TraesCS6D01G286200 chr7A 77.824 1195 213 32 1021 2180 142986081 142984904 0.000000e+00 691.0
22 TraesCS6D01G286200 chr3D 86.783 628 68 12 2952 3570 23241873 23241252 0.000000e+00 686.0
23 TraesCS6D01G286200 chr2D 83.727 719 98 16 2860 3570 77692591 77693298 0.000000e+00 662.0
24 TraesCS6D01G286200 chr2B 84.028 144 19 4 1477 1619 200257035 200256895 6.220000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G286200 chr6D 394723160 394726729 3569 False 6593.000000 6593 100.000000 1 3570 1 chr6D.!!$F2 3569
1 TraesCS6D01G286200 chr6D 304993250 304993893 643 True 643.000000 643 84.848000 2919 3570 1 chr6D.!!$R1 651
2 TraesCS6D01G286200 chr6D 305169518 305170154 636 False 586.000000 586 83.460000 2919 3570 1 chr6D.!!$F1 651
3 TraesCS6D01G286200 chr6B 590911966 590916205 4239 True 1353.000000 3243 93.164667 2 2668 3 chr6B.!!$R3 2666
4 TraesCS6D01G286200 chr6B 422351739 422352635 896 True 634.000000 822 91.894000 2757 3417 2 chr6B.!!$R2 660
5 TraesCS6D01G286200 chr6A 541227587 541234631 7044 True 1227.333333 3160 94.062333 445 2671 3 chr6A.!!$R1 2226
6 TraesCS6D01G286200 chr7B 584090146 584091056 910 True 1190.000000 1190 90.533000 2671 3570 1 chr7B.!!$R2 899
7 TraesCS6D01G286200 chr7B 105883160 105884222 1062 True 645.000000 645 78.035000 1124 2180 1 chr7B.!!$R1 1056
8 TraesCS6D01G286200 chr4B 216110327 216111241 914 True 1149.000000 1149 89.719000 2671 3570 1 chr4B.!!$R1 899
9 TraesCS6D01G286200 chr1B 92555976 92556892 916 True 1123.000000 1123 89.189000 2671 3570 1 chr1B.!!$R1 899
10 TraesCS6D01G286200 chr3A 729939427 729940111 684 False 1016.000000 1016 93.450000 2885 3570 1 chr3A.!!$F1 685
11 TraesCS6D01G286200 chr2A 626836838 626837501 663 False 929.000000 929 92.066000 2754 3414 1 chr2A.!!$F1 660
12 TraesCS6D01G286200 chr7D 70096506 70097393 887 False 726.000000 726 81.965000 2671 3570 1 chr7D.!!$F1 899
13 TraesCS6D01G286200 chr7D 140804681 140805855 1174 True 676.000000 676 77.676000 1021 2180 1 chr7D.!!$R1 1159
14 TraesCS6D01G286200 chr7A 142984904 142986081 1177 True 691.000000 691 77.824000 1021 2180 1 chr7A.!!$R1 1159
15 TraesCS6D01G286200 chr3D 23241252 23241873 621 True 686.000000 686 86.783000 2952 3570 1 chr3D.!!$R1 618
16 TraesCS6D01G286200 chr2D 77692591 77693298 707 False 662.000000 662 83.727000 2860 3570 1 chr2D.!!$F1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 4938 0.030504 TTTGAACATGCACGCACCAG 59.969 50.0 0.00 0.0 0.00 4.00 F
908 5710 0.250166 ACGGCGTAAGGAAAACAGCT 60.250 50.0 12.58 0.0 38.28 4.24 F
2271 7122 0.317160 TTGACGTGCTCTCCATCGTT 59.683 50.0 0.00 0.0 33.52 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 7021 0.325933 TGTCCATCAGCTGGTGGAAG 59.674 55.000 43.07 21.15 45.50 3.46 R
2282 7133 0.389817 CCGTTCTCGTTCTGCCATGA 60.390 55.000 0.00 0.00 35.01 3.07 R
3252 8368 5.452078 TCATGCTTCAATTTCTTTTCCGT 57.548 34.783 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.056536 CACTCTCAGCAGTAACAAGCCTA 60.057 47.826 0.00 0.00 0.00 3.93
49 56 1.019650 ACCATGGAGTAGAGGGGTCT 58.980 55.000 21.47 0.00 0.00 3.85
123 130 2.171840 TCTAGTCGAGCCTGCTTTTCT 58.828 47.619 0.00 0.00 0.00 2.52
180 187 5.798934 AGTTAACTAAGTGCGTCGACTTATG 59.201 40.000 14.70 0.00 37.70 1.90
211 218 9.180678 AGAAAACGACATGCAACTTAAATTTAG 57.819 29.630 0.00 0.00 0.00 1.85
218 225 4.888917 TGCAACTTAAATTTAGCCAACCC 58.111 39.130 0.00 0.00 0.00 4.11
254 261 9.950680 ACAACAAAAGTGAACTAAATGATGTAG 57.049 29.630 0.00 0.00 0.00 2.74
321 328 8.615878 ATTTTGTTGCTAATTTACCCTTTTCC 57.384 30.769 0.00 0.00 0.00 3.13
342 349 5.977635 TCCGATGAGTTGTCAATCTACATT 58.022 37.500 0.00 0.00 35.88 2.71
343 350 6.406370 TCCGATGAGTTGTCAATCTACATTT 58.594 36.000 0.00 0.00 35.88 2.32
344 351 6.878923 TCCGATGAGTTGTCAATCTACATTTT 59.121 34.615 0.00 0.00 35.88 1.82
375 382 6.658188 ATCGAGGATTTCTACTCCTTTAGG 57.342 41.667 0.00 0.00 43.29 2.69
479 4892 3.306019 GGCAACCATTTCGAAAATCCTGT 60.306 43.478 15.66 5.14 0.00 4.00
525 4938 0.030504 TTTGAACATGCACGCACCAG 59.969 50.000 0.00 0.00 0.00 4.00
645 5440 5.585047 GGTCCACTGAATACACTGGTTTATC 59.415 44.000 0.00 0.00 33.66 1.75
677 5472 2.687935 GCACCTGAAGTTCTGAACCAAA 59.312 45.455 16.48 2.18 0.00 3.28
701 5496 0.533755 CTGACAATGGGCTCGGATCC 60.534 60.000 0.00 0.00 0.00 3.36
706 5501 0.394352 AATGGGCTCGGATCCAACAC 60.394 55.000 13.41 1.39 36.54 3.32
717 5512 1.470098 GATCCAACACACCATGTCAGC 59.530 52.381 0.00 0.00 42.31 4.26
779 5574 2.356535 GCCACTTCCCTCACTGATCATT 60.357 50.000 0.00 0.00 0.00 2.57
780 5575 3.539604 CCACTTCCCTCACTGATCATTC 58.460 50.000 0.00 0.00 0.00 2.67
783 5578 3.454082 ACTTCCCTCACTGATCATTCTCC 59.546 47.826 0.00 0.00 0.00 3.71
908 5710 0.250166 ACGGCGTAAGGAAAACAGCT 60.250 50.000 12.58 0.00 38.28 4.24
909 5711 0.872388 CGGCGTAAGGAAAACAGCTT 59.128 50.000 0.00 0.00 38.28 3.74
946 5756 1.444553 GTCCACTCTCCGTTGCTCG 60.445 63.158 0.00 0.00 39.52 5.03
947 5757 1.602605 TCCACTCTCCGTTGCTCGA 60.603 57.895 3.69 0.00 42.86 4.04
1065 5875 1.004440 GCTGGTCACGCTCCTCTTT 60.004 57.895 0.00 0.00 0.00 2.52
1500 6340 2.741092 GTCTCCACGCCCAAGTCA 59.259 61.111 0.00 0.00 0.00 3.41
1735 6575 3.467226 CGCCCATGTACCTCCCGT 61.467 66.667 0.00 0.00 0.00 5.28
1930 6770 4.473520 AGATGTTCCCGGCGCTGG 62.474 66.667 29.16 29.16 0.00 4.85
1941 6781 4.459089 GCGCTGGAGAGGGTGGTC 62.459 72.222 0.00 0.00 34.59 4.02
2226 7066 2.914777 CTTAGCAGTGCTCGCCCCTC 62.915 65.000 23.64 0.00 40.44 4.30
2240 7080 1.908619 GCCCCTCAAATGGATGGTTTT 59.091 47.619 0.00 0.00 29.85 2.43
2268 7119 3.002791 TGATTTTGACGTGCTCTCCATC 58.997 45.455 0.00 0.00 0.00 3.51
2271 7122 0.317160 TTGACGTGCTCTCCATCGTT 59.683 50.000 0.00 0.00 33.52 3.85
2282 7133 4.803613 GCTCTCCATCGTTTGTTTTGTTTT 59.196 37.500 0.00 0.00 0.00 2.43
2572 7423 0.729690 GCAACTTCGGGCTCTGAATC 59.270 55.000 0.00 0.00 0.00 2.52
2592 7443 3.739703 TGGACAGTCCAGACGTACT 57.260 52.632 19.21 0.00 42.67 2.73
2593 7444 2.865119 TGGACAGTCCAGACGTACTA 57.135 50.000 19.21 0.00 42.67 1.82
2624 7475 4.102649 CAGAGTTTTGGTTTCACCGTTTC 58.897 43.478 0.00 0.00 42.58 2.78
2643 7494 6.817140 CCGTTTCTTCTTGGTATATATAGGGC 59.183 42.308 0.00 0.00 0.00 5.19
2689 7540 9.430399 TGGCACTTCTATACCTACTATTAAAGT 57.570 33.333 0.00 0.00 42.62 2.66
2783 7645 1.078143 GTCATGAGGCACTGGGGTC 60.078 63.158 0.00 0.00 41.55 4.46
2787 7649 0.257039 ATGAGGCACTGGGGTCAATC 59.743 55.000 0.00 0.00 41.55 2.67
2815 7677 7.337150 ACGATCGTACGTTATTTTCTCAAAA 57.663 32.000 21.32 0.00 44.14 2.44
2829 7691 2.117206 AAAACATCTGGGCCGGCA 59.883 55.556 30.85 7.96 0.00 5.69
2871 7738 3.947196 TGCGATGACATAGCTCCAAAAAT 59.053 39.130 19.43 0.00 0.00 1.82
2894 7999 1.676968 CCTGTGTGGGGATCGAACA 59.323 57.895 0.00 0.00 0.00 3.18
2933 8038 3.569194 ACATCACACACCAACCAGTTA 57.431 42.857 0.00 0.00 0.00 2.24
2937 8042 2.026169 TCACACACCAACCAGTTAACCA 60.026 45.455 0.88 0.00 0.00 3.67
2950 8055 1.068434 GTTAACCAGCCAAGCTTTGCA 59.932 47.619 23.06 0.42 36.40 4.08
2957 8062 1.547372 AGCCAAGCTTTGCAGGTTATG 59.453 47.619 23.06 0.00 38.76 1.90
3395 8527 6.183309 TCCAAACAATTTTTGAAAAACCCG 57.817 33.333 5.08 0.17 0.00 5.28
3414 8546 5.238583 ACCCGAACAAAATTTCAAAACACA 58.761 33.333 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.548920 GCTTGTTACTGCTGAGAGTGGT 60.549 50.000 0.00 0.00 0.00 4.16
24 25 3.780850 CCCCTCTACTCCATGGTTTTAGT 59.219 47.826 12.58 10.33 0.00 2.24
49 56 6.894339 TCTCAATCGACTTATATGTAGGCA 57.106 37.500 0.00 0.00 0.00 4.75
123 130 3.585862 GTTGAGATTCGTGCAGGAGTAA 58.414 45.455 9.34 0.00 0.00 2.24
180 187 4.475944 AGTTGCATGTCGTTTTCTTATGC 58.524 39.130 0.00 0.00 43.21 3.14
211 218 7.497925 TTTGTTGTTTTTATAATGGGTTGGC 57.502 32.000 0.00 0.00 0.00 4.52
226 233 9.651913 ACATCATTTAGTTCACTTTTGTTGTTT 57.348 25.926 0.00 0.00 0.00 2.83
263 270 7.387265 AAGGTTTCACCATTTTAGGGAATTT 57.613 32.000 0.00 0.00 41.95 1.82
291 298 7.662897 AGGGTAAATTAGCAACAAAATTTCGA 58.337 30.769 4.53 0.00 36.80 3.71
292 299 7.883229 AGGGTAAATTAGCAACAAAATTTCG 57.117 32.000 4.53 0.00 36.80 3.46
296 303 7.386573 CGGAAAAGGGTAAATTAGCAACAAAAT 59.613 33.333 4.53 0.00 0.00 1.82
297 304 6.702282 CGGAAAAGGGTAAATTAGCAACAAAA 59.298 34.615 4.53 0.00 0.00 2.44
321 328 7.479603 CACAAAATGTAGATTGACAACTCATCG 59.520 37.037 0.00 0.00 31.83 3.84
342 349 6.934645 AGTAGAAATCCTCGATTTGTCACAAA 59.065 34.615 5.18 5.18 41.56 2.83
343 350 6.464222 AGTAGAAATCCTCGATTTGTCACAA 58.536 36.000 4.41 0.00 41.56 3.33
344 351 6.037786 AGTAGAAATCCTCGATTTGTCACA 57.962 37.500 4.41 0.00 41.56 3.58
413 1619 9.338622 GCCAAGTACTAATTAACAGTGGATAAT 57.661 33.333 8.33 0.00 0.00 1.28
414 1620 8.322828 TGCCAAGTACTAATTAACAGTGGATAA 58.677 33.333 8.33 0.00 0.00 1.75
415 1621 7.767198 GTGCCAAGTACTAATTAACAGTGGATA 59.233 37.037 8.33 0.00 0.00 2.59
416 1622 6.598064 GTGCCAAGTACTAATTAACAGTGGAT 59.402 38.462 8.33 0.00 0.00 3.41
417 1623 5.935789 GTGCCAAGTACTAATTAACAGTGGA 59.064 40.000 8.33 0.00 0.00 4.02
431 1637 2.037251 TCCTCTTGACTGTGCCAAGTAC 59.963 50.000 8.53 0.00 41.18 2.73
432 1638 2.037251 GTCCTCTTGACTGTGCCAAGTA 59.963 50.000 8.53 0.00 41.18 2.24
433 1639 1.131638 TCCTCTTGACTGTGCCAAGT 58.868 50.000 8.53 0.00 41.18 3.16
434 1640 1.517242 GTCCTCTTGACTGTGCCAAG 58.483 55.000 3.53 3.53 41.03 3.61
456 4869 2.896685 AGGATTTTCGAAATGGTTGCCA 59.103 40.909 12.12 0.00 38.19 4.92
597 5392 8.686334 ACCAAAGATAAACTAATGCACTAATGG 58.314 33.333 0.00 0.00 0.00 3.16
677 5472 1.078848 GAGCCCATTGTCAGCGAGT 60.079 57.895 0.00 0.00 0.00 4.18
701 5496 0.514255 CGAGCTGACATGGTGTGTTG 59.486 55.000 0.00 0.00 42.36 3.33
706 5501 1.399440 CATTTCCGAGCTGACATGGTG 59.601 52.381 0.00 0.00 0.00 4.17
717 5512 1.521681 GACGGCCTCCATTTCCGAG 60.522 63.158 0.00 0.00 45.53 4.63
758 5553 0.615331 TGATCAGTGAGGGAAGTGGC 59.385 55.000 0.00 0.00 0.00 5.01
764 5559 3.120468 TGGAGAATGATCAGTGAGGGA 57.880 47.619 0.00 0.00 0.00 4.20
766 5561 4.161942 ACTCTTGGAGAATGATCAGTGAGG 59.838 45.833 0.00 0.00 33.32 3.86
779 5574 1.768275 TGGCACTTTGACTCTTGGAGA 59.232 47.619 1.31 0.00 33.32 3.71
780 5575 1.876156 GTGGCACTTTGACTCTTGGAG 59.124 52.381 11.13 0.00 35.52 3.86
783 5578 0.954452 GGGTGGCACTTTGACTCTTG 59.046 55.000 18.45 0.00 0.00 3.02
908 5710 2.127042 GGAAATTGTCGCGCGCAA 60.127 55.556 30.88 30.88 0.00 4.85
909 5711 3.022401 GAGGAAATTGTCGCGCGCA 62.022 57.895 32.61 23.34 0.00 6.09
964 5774 2.110967 TAGAAGGACGCCGACGAGG 61.111 63.158 0.00 0.00 43.93 4.63
965 5775 1.062206 GTAGAAGGACGCCGACGAG 59.938 63.158 0.00 0.00 43.93 4.18
966 5776 0.108186 TAGTAGAAGGACGCCGACGA 60.108 55.000 0.00 0.00 43.93 4.20
968 5778 1.330213 GTCTAGTAGAAGGACGCCGAC 59.670 57.143 0.17 0.00 0.00 4.79
969 5779 1.661341 GTCTAGTAGAAGGACGCCGA 58.339 55.000 0.17 0.00 0.00 5.54
970 5780 0.304098 CGTCTAGTAGAAGGACGCCG 59.696 60.000 0.17 0.00 44.32 6.46
974 5784 0.029167 GCCGCGTCTAGTAGAAGGAC 59.971 60.000 17.15 8.19 0.00 3.85
975 5785 0.107312 AGCCGCGTCTAGTAGAAGGA 60.107 55.000 17.15 0.00 0.00 3.36
976 5786 1.532007 CTAGCCGCGTCTAGTAGAAGG 59.468 57.143 15.76 12.51 33.19 3.46
977 5787 1.532007 CCTAGCCGCGTCTAGTAGAAG 59.468 57.143 21.42 8.58 35.43 2.85
1065 5875 1.213013 GAAGAAGACGCAGGCGAGA 59.787 57.895 21.62 0.00 42.83 4.04
1500 6340 3.005539 ATGGCGAGGCAGTGGAGT 61.006 61.111 5.43 0.00 0.00 3.85
1735 6575 2.654877 GAACCAGACGCGGAAGGA 59.345 61.111 12.47 0.00 0.00 3.36
1777 6617 4.724602 GAGGAGCTGCACGTGCGA 62.725 66.667 33.22 21.54 45.83 5.10
1893 6733 1.684734 GGGGAGGTAGAACCGCAGA 60.685 63.158 2.25 0.00 44.90 4.26
2181 7021 0.325933 TGTCCATCAGCTGGTGGAAG 59.674 55.000 43.07 21.15 45.50 3.46
2207 7047 2.512515 GGGGCGAGCACTGCTAAG 60.513 66.667 2.71 2.56 39.88 2.18
2226 7066 6.095432 TCACAGGTAAAAACCATCCATTTG 57.905 37.500 0.00 0.00 0.00 2.32
2240 7080 3.472652 AGCACGTCAAAATCACAGGTAA 58.527 40.909 0.00 0.00 0.00 2.85
2268 7119 4.328440 TCTGCCATGAAAACAAAACAAACG 59.672 37.500 0.00 0.00 0.00 3.60
2271 7122 4.328440 CGTTCTGCCATGAAAACAAAACAA 59.672 37.500 0.00 0.00 0.00 2.83
2282 7133 0.389817 CCGTTCTCGTTCTGCCATGA 60.390 55.000 0.00 0.00 35.01 3.07
2591 7442 4.636249 ACCAAAACTCTGTTCAGAGCTAG 58.364 43.478 24.22 14.15 39.42 3.42
2592 7443 4.689612 ACCAAAACTCTGTTCAGAGCTA 57.310 40.909 24.22 0.00 39.42 3.32
2593 7444 3.567478 ACCAAAACTCTGTTCAGAGCT 57.433 42.857 24.22 13.40 39.42 4.09
2624 7475 6.578023 GCTCAGCCCTATATATACCAAGAAG 58.422 44.000 0.00 0.00 0.00 2.85
2689 7540 9.762381 ATGACCAAACCAAAAATACCTATTCTA 57.238 29.630 0.00 0.00 0.00 2.10
2690 7541 8.664669 ATGACCAAACCAAAAATACCTATTCT 57.335 30.769 0.00 0.00 0.00 2.40
2783 7645 6.410931 AATAACGTACGATCGTAACGATTG 57.589 37.500 34.80 22.15 47.00 2.67
2787 7649 6.192682 TGAGAAAATAACGTACGATCGTAACG 59.807 38.462 30.48 30.48 43.38 3.18
2815 7677 3.731728 ATGTGCCGGCCCAGATGT 61.732 61.111 26.77 0.00 0.00 3.06
2829 7691 6.288294 TCGCAGCCTATTACTATTTTCATGT 58.712 36.000 0.00 0.00 0.00 3.21
2871 7738 1.609239 GATCCCCACACAGGCATCA 59.391 57.895 0.00 0.00 35.39 3.07
2894 7999 8.267183 TGTGATGTTTCTAATATGACATCCTGT 58.733 33.333 11.46 0.00 44.76 4.00
2933 8038 1.744014 CTGCAAAGCTTGGCTGGTT 59.256 52.632 25.85 0.00 39.62 3.67
2937 8042 1.547372 CATAACCTGCAAAGCTTGGCT 59.453 47.619 25.85 8.89 42.56 4.75
2950 8055 5.564550 AGATTCTGCACTGTTTCATAACCT 58.435 37.500 0.00 0.00 33.15 3.50
2957 8062 6.017109 TGGTTCTTAAGATTCTGCACTGTTTC 60.017 38.462 5.89 0.00 0.00 2.78
3048 8158 2.602211 TGTTTGCGCTTCACAAAACATG 59.398 40.909 15.06 0.00 38.64 3.21
3252 8368 5.452078 TCATGCTTCAATTTCTTTTCCGT 57.548 34.783 0.00 0.00 0.00 4.69
3282 8398 8.213812 CGTGTATCCACAAATTGTTCATTTTTC 58.786 33.333 0.00 0.00 41.93 2.29
3340 8471 8.925788 TTGTTCAAAATTTTCACAACTTTTCG 57.074 26.923 16.28 0.00 0.00 3.46
3443 8576 9.320295 AGGAGTTTCAAATAATGTTCCCATTTA 57.680 29.630 0.00 0.00 41.50 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.