Multiple sequence alignment - TraesCS6D01G285100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G285100 chr6D 100.000 3278 0 0 1 3278 392882193 392885470 0.000000e+00 6054
1 TraesCS6D01G285100 chr6D 97.512 201 5 0 3078 3278 72195350 72195150 8.710000e-91 344
2 TraesCS6D01G285100 chr6A 96.453 3073 79 14 25 3077 539648373 539651435 0.000000e+00 5044
3 TraesCS6D01G285100 chr6B 92.980 3077 138 24 37 3077 586655587 586658621 0.000000e+00 4414
4 TraesCS6D01G285100 chr7D 97.512 201 5 0 3078 3278 574232608 574232808 8.710000e-91 344
5 TraesCS6D01G285100 chr5A 96.517 201 7 0 3078 3278 666947935 666947735 1.880000e-87 333
6 TraesCS6D01G285100 chrUn 96.500 200 7 0 3079 3278 30436090 30435891 6.780000e-87 331
7 TraesCS6D01G285100 chr5D 95.610 205 9 0 3074 3278 435542893 435542689 2.440000e-86 329
8 TraesCS6D01G285100 chr1A 95.522 201 9 0 3078 3278 485018715 485018515 4.080000e-84 322
9 TraesCS6D01G285100 chr1A 95.522 201 9 0 3078 3278 577043559 577043359 4.080000e-84 322
10 TraesCS6D01G285100 chr4D 95.025 201 10 0 3078 3278 414509585 414509385 1.900000e-82 316
11 TraesCS6D01G285100 chr2D 95.025 201 10 0 3078 3278 607669401 607669201 1.900000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G285100 chr6D 392882193 392885470 3277 False 6054 6054 100.000 1 3278 1 chr6D.!!$F1 3277
1 TraesCS6D01G285100 chr6A 539648373 539651435 3062 False 5044 5044 96.453 25 3077 1 chr6A.!!$F1 3052
2 TraesCS6D01G285100 chr6B 586655587 586658621 3034 False 4414 4414 92.980 37 3077 1 chr6B.!!$F1 3040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.251341 AGATGGGGCCTGTTGTGTTC 60.251 55.0 0.84 0.0 0.0 3.18 F
1221 1240 0.109086 CTGTGCCGGTAGACTGTCAG 60.109 60.0 10.88 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 1954 0.250858 CACCACTGGCACCATTGAGA 60.251 55.0 8.49 0.0 0.00 3.27 R
3205 3247 0.032952 GTATGCCTCCGTTCCGCATA 59.967 55.0 0.00 0.0 42.91 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.455877 GCTGGGCATATCTGTTTATGTACC 59.544 45.833 0.00 0.00 33.07 3.34
71 72 8.512036 CCATTTCTTATGGTTCACCTGCAAGG 62.512 46.154 0.00 0.00 46.70 3.61
143 144 7.092137 TCCAGCATGATTTTCTAGATTTGTG 57.908 36.000 0.00 0.00 39.69 3.33
144 145 6.885918 TCCAGCATGATTTTCTAGATTTGTGA 59.114 34.615 0.00 0.00 39.69 3.58
145 146 7.394077 TCCAGCATGATTTTCTAGATTTGTGAA 59.606 33.333 0.00 0.00 39.69 3.18
208 209 0.251341 AGATGGGGCCTGTTGTGTTC 60.251 55.000 0.84 0.00 0.00 3.18
350 352 2.092323 GCGGGTTATGAGCCTTTTCTT 58.908 47.619 4.03 0.00 41.38 2.52
413 417 4.301072 TTTTGGGTCGAATCCATTCTCT 57.699 40.909 9.24 0.00 34.69 3.10
426 430 6.760440 ATCCATTCTCTGATGACAAGGTAT 57.240 37.500 0.00 0.00 0.00 2.73
438 442 8.437360 TGATGACAAGGTATAATGACATGTTC 57.563 34.615 0.00 0.00 33.30 3.18
683 695 7.667043 AACTTCTAATGTTCATCTGCGTTTA 57.333 32.000 0.00 0.00 0.00 2.01
736 748 6.312672 TGGAAACATATATTCATATGCGACCG 59.687 38.462 0.00 0.00 45.44 4.79
904 923 7.070447 TCTGAGTAGAATTCCTGCTGACATAAT 59.930 37.037 0.65 0.00 37.98 1.28
1221 1240 0.109086 CTGTGCCGGTAGACTGTCAG 60.109 60.000 10.88 0.00 0.00 3.51
1765 1784 6.451064 ACAACTCTGAAACTAAAAGTTGGG 57.549 37.500 15.53 0.00 46.94 4.12
1935 1954 4.614475 TGATAGAGAACATGTCAGAGGGT 58.386 43.478 0.00 0.00 0.00 4.34
2445 2468 8.717717 TCAGATTTTACTCCATGTTCCATAGAT 58.282 33.333 0.00 0.00 0.00 1.98
2639 2667 4.321899 GCCTTGCATCTGGACAAAATTGTA 60.322 41.667 0.00 0.00 42.43 2.41
2640 2668 5.163513 CCTTGCATCTGGACAAAATTGTAC 58.836 41.667 1.42 1.42 42.43 2.90
2641 2669 5.047802 CCTTGCATCTGGACAAAATTGTACT 60.048 40.000 9.75 0.00 42.60 2.73
2642 2670 5.627499 TGCATCTGGACAAAATTGTACTC 57.373 39.130 9.75 0.00 42.60 2.59
2643 2671 4.458989 TGCATCTGGACAAAATTGTACTCC 59.541 41.667 9.75 3.31 42.60 3.85
2709 2737 5.852282 AATGCCTGTTAACAGAAACAACT 57.148 34.783 32.50 16.87 46.59 3.16
2774 2816 6.652900 TCGTTGACATATTCAAGAACCAATCA 59.347 34.615 1.96 0.00 45.23 2.57
2852 2894 0.392060 GTCGACACCATAACCACCCC 60.392 60.000 11.55 0.00 0.00 4.95
2863 2905 5.104235 ACCATAACCACCCCTATGTAACTTC 60.104 44.000 0.00 0.00 0.00 3.01
2871 2913 3.492137 CCCCTATGTAACTTCGCACTACC 60.492 52.174 0.00 0.00 0.00 3.18
2895 2937 1.137404 CGCTTTTGCCCGAATCCTG 59.863 57.895 0.00 0.00 43.93 3.86
2927 2969 3.917985 GTCAAAACGACATTGGGCATAAC 59.082 43.478 0.00 0.00 44.69 1.89
2932 2974 5.968528 AACGACATTGGGCATAACTAAAA 57.031 34.783 0.00 0.00 0.00 1.52
2980 3022 7.990541 TTTCAGATGAAACATCAAAACACAG 57.009 32.000 13.06 0.00 38.94 3.66
3018 3060 5.164061 GGCAAACAAAGTCGATATTTTGCAG 60.164 40.000 22.83 13.63 46.80 4.41
3028 3070 1.807139 TATTTTGCAGCGAGCTGTCA 58.193 45.000 23.79 18.86 45.24 3.58
3055 3097 0.464036 TAGTAGCATGGGCACTTCGG 59.536 55.000 0.00 0.00 44.61 4.30
3077 3119 1.302832 GAGCCCTGGTGACACTTGG 60.303 63.158 5.39 7.85 35.60 3.61
3078 3120 2.282462 GCCCTGGTGACACTTGGG 60.282 66.667 23.26 23.26 40.74 4.12
3079 3121 2.436109 CCCTGGTGACACTTGGGG 59.564 66.667 21.18 17.45 35.60 4.96
3080 3122 2.460853 CCCTGGTGACACTTGGGGT 61.461 63.158 21.18 0.00 35.60 4.95
3091 3133 3.708563 CACTTGGGGTGTGTTTAGTTG 57.291 47.619 0.00 0.00 40.79 3.16
3092 3134 2.028876 ACTTGGGGTGTGTTTAGTTGC 58.971 47.619 0.00 0.00 0.00 4.17
3093 3135 2.306847 CTTGGGGTGTGTTTAGTTGCT 58.693 47.619 0.00 0.00 0.00 3.91
3094 3136 1.686355 TGGGGTGTGTTTAGTTGCTG 58.314 50.000 0.00 0.00 0.00 4.41
3095 3137 1.064314 TGGGGTGTGTTTAGTTGCTGT 60.064 47.619 0.00 0.00 0.00 4.40
3096 3138 1.607148 GGGGTGTGTTTAGTTGCTGTC 59.393 52.381 0.00 0.00 0.00 3.51
3097 3139 2.294074 GGGTGTGTTTAGTTGCTGTCA 58.706 47.619 0.00 0.00 0.00 3.58
3098 3140 2.032924 GGGTGTGTTTAGTTGCTGTCAC 59.967 50.000 0.00 0.00 0.00 3.67
3099 3141 2.943033 GGTGTGTTTAGTTGCTGTCACT 59.057 45.455 0.00 0.00 0.00 3.41
3100 3142 3.242739 GGTGTGTTTAGTTGCTGTCACTG 60.243 47.826 0.00 0.00 0.00 3.66
3101 3143 2.942376 TGTGTTTAGTTGCTGTCACTGG 59.058 45.455 0.00 0.00 0.00 4.00
3102 3144 3.202906 GTGTTTAGTTGCTGTCACTGGA 58.797 45.455 0.00 0.00 0.00 3.86
3103 3145 3.815401 GTGTTTAGTTGCTGTCACTGGAT 59.185 43.478 0.00 0.00 0.00 3.41
3104 3146 4.994852 GTGTTTAGTTGCTGTCACTGGATA 59.005 41.667 0.00 0.00 0.00 2.59
3105 3147 5.120830 GTGTTTAGTTGCTGTCACTGGATAG 59.879 44.000 0.00 0.00 35.54 2.08
3106 3148 5.011635 TGTTTAGTTGCTGTCACTGGATAGA 59.988 40.000 0.00 0.00 34.44 1.98
3107 3149 5.738619 TTAGTTGCTGTCACTGGATAGAA 57.261 39.130 0.00 0.00 34.44 2.10
3108 3150 4.833478 AGTTGCTGTCACTGGATAGAAT 57.167 40.909 0.00 0.00 34.44 2.40
3109 3151 4.511527 AGTTGCTGTCACTGGATAGAATG 58.488 43.478 0.00 0.00 34.44 2.67
3110 3152 4.019860 AGTTGCTGTCACTGGATAGAATGT 60.020 41.667 0.00 0.00 34.44 2.71
3111 3153 4.128925 TGCTGTCACTGGATAGAATGTC 57.871 45.455 0.00 0.00 34.44 3.06
3112 3154 3.515104 TGCTGTCACTGGATAGAATGTCA 59.485 43.478 0.00 0.00 34.44 3.58
3113 3155 3.868077 GCTGTCACTGGATAGAATGTCAC 59.132 47.826 0.00 0.00 34.44 3.67
3114 3156 4.108336 CTGTCACTGGATAGAATGTCACG 58.892 47.826 0.00 0.00 34.44 4.35
3115 3157 3.119137 TGTCACTGGATAGAATGTCACGG 60.119 47.826 0.00 0.00 0.00 4.94
3116 3158 2.430694 TCACTGGATAGAATGTCACGGG 59.569 50.000 0.00 0.00 0.00 5.28
3117 3159 2.168521 CACTGGATAGAATGTCACGGGT 59.831 50.000 0.00 0.00 0.00 5.28
3118 3160 2.431057 ACTGGATAGAATGTCACGGGTC 59.569 50.000 0.00 0.00 0.00 4.46
3119 3161 2.695666 CTGGATAGAATGTCACGGGTCT 59.304 50.000 0.00 0.00 0.00 3.85
3120 3162 2.430694 TGGATAGAATGTCACGGGTCTG 59.569 50.000 0.00 0.00 0.00 3.51
3121 3163 2.693591 GGATAGAATGTCACGGGTCTGA 59.306 50.000 0.00 0.00 0.00 3.27
3122 3164 3.491104 GGATAGAATGTCACGGGTCTGAC 60.491 52.174 0.00 0.00 40.98 3.51
3123 3165 0.608640 AGAATGTCACGGGTCTGACC 59.391 55.000 18.65 18.65 40.02 4.02
3132 3174 2.346365 GGTCTGACCCGTTCCCAC 59.654 66.667 16.14 0.00 30.04 4.61
3133 3175 2.513259 GGTCTGACCCGTTCCCACA 61.513 63.158 16.14 0.00 30.04 4.17
3134 3176 1.004918 GTCTGACCCGTTCCCACAG 60.005 63.158 0.00 0.00 0.00 3.66
3135 3177 2.358737 CTGACCCGTTCCCACAGC 60.359 66.667 0.00 0.00 0.00 4.40
3136 3178 3.901797 CTGACCCGTTCCCACAGCC 62.902 68.421 0.00 0.00 0.00 4.85
3137 3179 4.717313 GACCCGTTCCCACAGCCC 62.717 72.222 0.00 0.00 0.00 5.19
3139 3181 4.047125 CCCGTTCCCACAGCCCAT 62.047 66.667 0.00 0.00 0.00 4.00
3140 3182 2.035626 CCGTTCCCACAGCCCATT 59.964 61.111 0.00 0.00 0.00 3.16
3141 3183 2.046285 CCGTTCCCACAGCCCATTC 61.046 63.158 0.00 0.00 0.00 2.67
3142 3184 1.002134 CGTTCCCACAGCCCATTCT 60.002 57.895 0.00 0.00 0.00 2.40
3143 3185 1.026718 CGTTCCCACAGCCCATTCTC 61.027 60.000 0.00 0.00 0.00 2.87
3144 3186 1.026718 GTTCCCACAGCCCATTCTCG 61.027 60.000 0.00 0.00 0.00 4.04
3145 3187 2.819984 TTCCCACAGCCCATTCTCGC 62.820 60.000 0.00 0.00 0.00 5.03
3146 3188 3.197790 CCACAGCCCATTCTCGCG 61.198 66.667 0.00 0.00 0.00 5.87
3147 3189 2.434884 CACAGCCCATTCTCGCGT 60.435 61.111 5.77 0.00 0.00 6.01
3148 3190 2.034879 CACAGCCCATTCTCGCGTT 61.035 57.895 5.77 0.00 0.00 4.84
3149 3191 1.741770 ACAGCCCATTCTCGCGTTC 60.742 57.895 5.77 0.00 0.00 3.95
3150 3192 2.509336 AGCCCATTCTCGCGTTCG 60.509 61.111 5.77 0.00 0.00 3.95
3151 3193 3.564027 GCCCATTCTCGCGTTCGG 61.564 66.667 5.77 0.63 36.13 4.30
3152 3194 2.125673 CCCATTCTCGCGTTCGGT 60.126 61.111 5.77 0.00 36.13 4.69
3153 3195 1.740296 CCCATTCTCGCGTTCGGTT 60.740 57.895 5.77 0.00 36.13 4.44
3154 3196 0.458889 CCCATTCTCGCGTTCGGTTA 60.459 55.000 5.77 0.00 36.13 2.85
3155 3197 0.921347 CCATTCTCGCGTTCGGTTAG 59.079 55.000 5.77 0.00 36.13 2.34
3156 3198 1.625616 CATTCTCGCGTTCGGTTAGT 58.374 50.000 5.77 0.00 36.13 2.24
3157 3199 1.582502 CATTCTCGCGTTCGGTTAGTC 59.417 52.381 5.77 0.00 36.13 2.59
3158 3200 0.453282 TTCTCGCGTTCGGTTAGTCG 60.453 55.000 5.77 0.00 36.13 4.18
3159 3201 1.133253 CTCGCGTTCGGTTAGTCGA 59.867 57.895 5.77 0.00 37.38 4.20
3160 3202 0.453282 CTCGCGTTCGGTTAGTCGAA 60.453 55.000 5.77 0.00 45.34 3.71
3167 3209 3.731652 TTCGGTTAGTCGAAAGAACCA 57.268 42.857 19.05 8.07 44.70 3.67
3168 3210 3.293311 TCGGTTAGTCGAAAGAACCAG 57.707 47.619 19.05 13.47 45.01 4.00
3169 3211 2.886523 TCGGTTAGTCGAAAGAACCAGA 59.113 45.455 19.05 14.91 45.01 3.86
3170 3212 3.318839 TCGGTTAGTCGAAAGAACCAGAA 59.681 43.478 19.05 6.26 45.01 3.02
3171 3213 3.427863 CGGTTAGTCGAAAGAACCAGAAC 59.572 47.826 19.05 2.84 45.01 3.01
3172 3214 3.744942 GGTTAGTCGAAAGAACCAGAACC 59.255 47.826 15.87 5.07 45.01 3.62
3173 3215 4.502777 GGTTAGTCGAAAGAACCAGAACCT 60.503 45.833 15.87 0.00 45.01 3.50
3174 3216 5.279156 GGTTAGTCGAAAGAACCAGAACCTA 60.279 44.000 15.87 0.00 45.01 3.08
3175 3217 4.254402 AGTCGAAAGAACCAGAACCTAC 57.746 45.455 0.00 0.00 45.01 3.18
3176 3218 3.006644 AGTCGAAAGAACCAGAACCTACC 59.993 47.826 0.00 0.00 45.01 3.18
3177 3219 2.301009 TCGAAAGAACCAGAACCTACCC 59.699 50.000 0.00 0.00 37.03 3.69
3178 3220 2.696506 GAAAGAACCAGAACCTACCCG 58.303 52.381 0.00 0.00 0.00 5.28
3179 3221 1.725803 AAGAACCAGAACCTACCCGT 58.274 50.000 0.00 0.00 0.00 5.28
3180 3222 1.264295 AGAACCAGAACCTACCCGTC 58.736 55.000 0.00 0.00 0.00 4.79
3181 3223 0.248565 GAACCAGAACCTACCCGTCC 59.751 60.000 0.00 0.00 0.00 4.79
3182 3224 1.196766 AACCAGAACCTACCCGTCCC 61.197 60.000 0.00 0.00 0.00 4.46
3183 3225 1.611261 CCAGAACCTACCCGTCCCA 60.611 63.158 0.00 0.00 0.00 4.37
3184 3226 1.196104 CCAGAACCTACCCGTCCCAA 61.196 60.000 0.00 0.00 0.00 4.12
3185 3227 0.249398 CAGAACCTACCCGTCCCAAG 59.751 60.000 0.00 0.00 0.00 3.61
3186 3228 0.908180 AGAACCTACCCGTCCCAAGG 60.908 60.000 0.00 0.00 35.14 3.61
3187 3229 0.906282 GAACCTACCCGTCCCAAGGA 60.906 60.000 0.00 0.00 33.16 3.36
3188 3230 0.474273 AACCTACCCGTCCCAAGGAA 60.474 55.000 0.00 0.00 31.38 3.36
3189 3231 1.196766 ACCTACCCGTCCCAAGGAAC 61.197 60.000 0.00 0.00 31.38 3.62
3190 3232 1.217244 CTACCCGTCCCAAGGAACG 59.783 63.158 0.00 0.00 31.38 3.95
3191 3233 2.234913 CTACCCGTCCCAAGGAACGG 62.235 65.000 10.22 10.22 42.01 4.44
3192 3234 2.728460 TACCCGTCCCAAGGAACGGA 62.728 60.000 19.05 0.00 43.64 4.69
3193 3235 2.745037 CCGTCCCAAGGAACGGAA 59.255 61.111 11.87 0.00 43.64 4.30
3194 3236 1.298667 CCGTCCCAAGGAACGGAAT 59.701 57.895 11.87 0.00 43.64 3.01
3195 3237 0.538118 CCGTCCCAAGGAACGGAATA 59.462 55.000 11.87 0.00 43.64 1.75
3196 3238 1.140252 CCGTCCCAAGGAACGGAATAT 59.860 52.381 11.87 0.00 43.64 1.28
3197 3239 2.420967 CCGTCCCAAGGAACGGAATATT 60.421 50.000 11.87 0.00 43.64 1.28
3198 3240 2.870411 CGTCCCAAGGAACGGAATATTC 59.130 50.000 6.93 6.93 31.38 1.75
3199 3241 2.870411 GTCCCAAGGAACGGAATATTCG 59.130 50.000 9.32 7.42 31.38 3.34
3200 3242 1.602377 CCCAAGGAACGGAATATTCGC 59.398 52.381 9.32 2.15 0.00 4.70
3201 3243 2.561569 CCAAGGAACGGAATATTCGCT 58.438 47.619 9.32 0.00 0.00 4.93
3202 3244 2.544267 CCAAGGAACGGAATATTCGCTC 59.456 50.000 9.32 5.63 0.00 5.03
3203 3245 3.194861 CAAGGAACGGAATATTCGCTCA 58.805 45.455 9.32 0.00 0.00 4.26
3204 3246 3.753294 AGGAACGGAATATTCGCTCAT 57.247 42.857 9.32 1.13 0.00 2.90
3205 3247 4.073293 AGGAACGGAATATTCGCTCATT 57.927 40.909 9.32 0.00 0.00 2.57
3206 3248 5.209818 AGGAACGGAATATTCGCTCATTA 57.790 39.130 9.32 0.00 0.00 1.90
3207 3249 5.794894 AGGAACGGAATATTCGCTCATTAT 58.205 37.500 9.32 0.00 0.00 1.28
3208 3250 5.639506 AGGAACGGAATATTCGCTCATTATG 59.360 40.000 9.32 0.00 0.00 1.90
3209 3251 4.928661 ACGGAATATTCGCTCATTATGC 57.071 40.909 9.32 0.00 0.00 3.14
3236 3278 2.918712 AGGCATACCTCCAAATCGAG 57.081 50.000 0.00 0.00 46.34 4.04
3237 3279 1.202698 AGGCATACCTCCAAATCGAGC 60.203 52.381 0.00 0.00 46.34 5.03
3238 3280 0.861837 GCATACCTCCAAATCGAGCG 59.138 55.000 0.00 0.00 0.00 5.03
3239 3281 1.502231 CATACCTCCAAATCGAGCGG 58.498 55.000 0.00 0.00 0.00 5.52
3240 3282 1.068588 CATACCTCCAAATCGAGCGGA 59.931 52.381 0.00 0.00 0.00 5.54
3241 3283 0.458669 TACCTCCAAATCGAGCGGAC 59.541 55.000 0.00 0.00 0.00 4.79
3242 3284 1.878522 CCTCCAAATCGAGCGGACG 60.879 63.158 0.00 0.00 0.00 4.79
3243 3285 1.138883 CTCCAAATCGAGCGGACGA 59.861 57.895 6.22 6.22 46.04 4.20
3244 3286 1.140407 CTCCAAATCGAGCGGACGAC 61.140 60.000 5.93 0.00 44.84 4.34
3245 3287 1.445410 CCAAATCGAGCGGACGACA 60.445 57.895 5.93 0.00 44.84 4.35
3246 3288 1.413767 CCAAATCGAGCGGACGACAG 61.414 60.000 5.93 0.00 44.84 3.51
3247 3289 1.153823 AAATCGAGCGGACGACAGG 60.154 57.895 5.93 0.00 44.84 4.00
3248 3290 2.558554 AAATCGAGCGGACGACAGGG 62.559 60.000 5.93 0.00 44.84 4.45
3249 3291 3.989838 ATCGAGCGGACGACAGGGA 62.990 63.158 5.93 0.00 44.84 4.20
3250 3292 3.744719 CGAGCGGACGACAGGGAA 61.745 66.667 0.00 0.00 35.09 3.97
3251 3293 2.126031 GAGCGGACGACAGGGAAC 60.126 66.667 0.00 0.00 0.00 3.62
3252 3294 3.966026 GAGCGGACGACAGGGAACG 62.966 68.421 0.00 0.00 0.00 3.95
3253 3295 4.047059 GCGGACGACAGGGAACGA 62.047 66.667 0.00 0.00 0.00 3.85
3254 3296 2.178521 CGGACGACAGGGAACGAG 59.821 66.667 0.00 0.00 0.00 4.18
3255 3297 2.126031 GGACGACAGGGAACGAGC 60.126 66.667 0.00 0.00 0.00 5.03
3256 3298 2.126031 GACGACAGGGAACGAGCC 60.126 66.667 0.00 0.00 0.00 4.70
3263 3305 2.585153 GGGAACGAGCCCTCTTCC 59.415 66.667 9.62 13.53 45.12 3.46
3264 3306 2.585153 GGAACGAGCCCTCTTCCC 59.415 66.667 11.97 0.57 34.11 3.97
3265 3307 2.585153 GAACGAGCCCTCTTCCCC 59.415 66.667 0.00 0.00 0.00 4.81
3266 3308 1.990614 GAACGAGCCCTCTTCCCCT 60.991 63.158 0.00 0.00 0.00 4.79
3267 3309 1.962321 GAACGAGCCCTCTTCCCCTC 61.962 65.000 0.00 0.00 0.00 4.30
3268 3310 2.042435 CGAGCCCTCTTCCCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
3269 3311 2.131067 CGAGCCCTCTTCCCCTCTC 61.131 68.421 0.00 0.00 0.00 3.20
3270 3312 2.042435 AGCCCTCTTCCCCTCTCG 60.042 66.667 0.00 0.00 0.00 4.04
3271 3313 3.855853 GCCCTCTTCCCCTCTCGC 61.856 72.222 0.00 0.00 0.00 5.03
3272 3314 2.364317 CCCTCTTCCCCTCTCGCA 60.364 66.667 0.00 0.00 0.00 5.10
3273 3315 2.726351 CCCTCTTCCCCTCTCGCAC 61.726 68.421 0.00 0.00 0.00 5.34
3274 3316 2.492090 CTCTTCCCCTCTCGCACG 59.508 66.667 0.00 0.00 0.00 5.34
3275 3317 3.708220 CTCTTCCCCTCTCGCACGC 62.708 68.421 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.928334 ACAGATATGCCCAGCTTTCTG 58.072 47.619 10.39 10.39 40.02 3.02
10 11 3.659183 AACAGATATGCCCAGCTTTCT 57.341 42.857 0.00 0.00 0.00 2.52
11 12 5.300286 ACATAAACAGATATGCCCAGCTTTC 59.700 40.000 0.00 0.00 36.87 2.62
12 13 5.203528 ACATAAACAGATATGCCCAGCTTT 58.796 37.500 0.00 0.00 36.87 3.51
13 14 4.796606 ACATAAACAGATATGCCCAGCTT 58.203 39.130 0.00 0.00 36.87 3.74
14 15 4.443978 ACATAAACAGATATGCCCAGCT 57.556 40.909 0.00 0.00 36.87 4.24
15 16 4.455877 GGTACATAAACAGATATGCCCAGC 59.544 45.833 0.00 0.00 36.87 4.85
16 17 5.702670 CAGGTACATAAACAGATATGCCCAG 59.297 44.000 0.00 0.00 36.87 4.45
17 18 5.131977 ACAGGTACATAAACAGATATGCCCA 59.868 40.000 0.00 0.00 36.87 5.36
18 19 5.470098 CACAGGTACATAAACAGATATGCCC 59.530 44.000 0.00 0.00 36.87 5.36
19 20 6.288294 TCACAGGTACATAAACAGATATGCC 58.712 40.000 0.00 0.00 36.87 4.40
20 21 7.969536 ATCACAGGTACATAAACAGATATGC 57.030 36.000 0.00 0.00 36.87 3.14
21 22 9.424319 GGTATCACAGGTACATAAACAGATATG 57.576 37.037 0.00 0.00 38.86 1.78
22 23 9.154632 TGGTATCACAGGTACATAAACAGATAT 57.845 33.333 0.00 0.00 0.00 1.63
23 24 8.541899 TGGTATCACAGGTACATAAACAGATA 57.458 34.615 0.00 0.00 0.00 1.98
26 27 8.506168 AAATGGTATCACAGGTACATAAACAG 57.494 34.615 0.00 0.00 0.00 3.16
71 72 4.804139 CCCGTCATATCTACTTGTGTGTTC 59.196 45.833 0.00 0.00 0.00 3.18
81 82 3.305881 GGGCTAACACCCGTCATATCTAC 60.306 52.174 0.00 0.00 40.98 2.59
143 144 3.133141 ACCAACAGAGAGAAAGGCTTC 57.867 47.619 0.00 0.00 0.00 3.86
144 145 4.621747 CGATACCAACAGAGAGAAAGGCTT 60.622 45.833 0.00 0.00 0.00 4.35
145 146 3.118956 CGATACCAACAGAGAGAAAGGCT 60.119 47.826 0.00 0.00 0.00 4.58
228 229 3.791887 CGGAACTAGTAAAGCATCAGTCG 59.208 47.826 0.00 0.00 0.00 4.18
281 283 3.616219 ACATAGGCAAATAAGCGGAACA 58.384 40.909 0.00 0.00 34.64 3.18
413 417 7.498900 GGAACATGTCATTATACCTTGTCATCA 59.501 37.037 0.00 0.00 0.00 3.07
426 430 7.379059 AGGATGTATCAGGAACATGTCATTA 57.621 36.000 0.00 0.00 37.69 1.90
523 535 7.504924 TTAACACCCAATGAGTAAAAGACAG 57.495 36.000 0.00 0.00 0.00 3.51
583 595 8.809468 ACAGAAGATTACTGACTACTCATACA 57.191 34.615 0.00 0.00 38.55 2.29
736 748 8.857216 CATCACTTAGCTCAATCAATCAAAAAC 58.143 33.333 0.00 0.00 0.00 2.43
1221 1240 2.711547 AGAATAGCCCTGATTACCACCC 59.288 50.000 0.00 0.00 0.00 4.61
1765 1784 3.064207 TGTTCATGCTCGGAAGTGTAAC 58.936 45.455 0.00 0.00 0.00 2.50
1935 1954 0.250858 CACCACTGGCACCATTGAGA 60.251 55.000 8.49 0.00 0.00 3.27
2445 2468 4.593206 ACAAGGAAGGATGTGACTGACTAA 59.407 41.667 0.00 0.00 0.00 2.24
2639 2667 4.583871 GACAATTCAGAGTCCAATGGAGT 58.416 43.478 9.79 9.79 38.20 3.85
2709 2737 6.330004 TGTCACGGTACATTTACAACTAGA 57.670 37.500 0.00 0.00 0.00 2.43
2716 2744 5.616488 AAACCATGTCACGGTACATTTAC 57.384 39.130 0.00 0.00 38.01 2.01
2725 2753 3.756434 AGGAAATGTAAACCATGTCACGG 59.244 43.478 0.00 0.00 39.27 4.94
2774 2816 8.934825 GGTTGAATGTTTTGCAAATGTATGTAT 58.065 29.630 13.65 0.00 0.00 2.29
2852 2894 3.181493 ACCGGTAGTGCGAAGTTACATAG 60.181 47.826 4.49 0.00 0.00 2.23
2895 2937 1.104577 TCGTTTTGACTTGGCACCCC 61.105 55.000 0.00 0.00 0.00 4.95
2980 3022 0.393808 TTTGCCCGATTAGTGCTCCC 60.394 55.000 0.00 0.00 0.00 4.30
3018 3060 2.159310 ACTAGAGACATTGACAGCTCGC 60.159 50.000 0.00 0.00 32.80 5.03
3028 3070 3.041211 TGCCCATGCTACTAGAGACATT 58.959 45.455 0.00 0.00 38.71 2.71
3055 3097 4.314440 TGTCACCAGGGCTCGCAC 62.314 66.667 0.00 0.00 0.00 5.34
3077 3119 2.032924 GTGACAGCAACTAAACACACCC 59.967 50.000 0.00 0.00 0.00 4.61
3078 3120 2.943033 AGTGACAGCAACTAAACACACC 59.057 45.455 0.00 0.00 0.00 4.16
3079 3121 3.242739 CCAGTGACAGCAACTAAACACAC 60.243 47.826 0.00 0.00 0.00 3.82
3080 3122 2.942376 CCAGTGACAGCAACTAAACACA 59.058 45.455 0.00 0.00 0.00 3.72
3081 3123 3.202906 TCCAGTGACAGCAACTAAACAC 58.797 45.455 0.00 0.00 0.00 3.32
3082 3124 3.552132 TCCAGTGACAGCAACTAAACA 57.448 42.857 0.00 0.00 0.00 2.83
3083 3125 5.479306 TCTATCCAGTGACAGCAACTAAAC 58.521 41.667 0.00 0.00 0.00 2.01
3084 3126 5.738619 TCTATCCAGTGACAGCAACTAAA 57.261 39.130 0.00 0.00 0.00 1.85
3085 3127 5.738619 TTCTATCCAGTGACAGCAACTAA 57.261 39.130 0.00 0.00 0.00 2.24
3086 3128 5.187772 ACATTCTATCCAGTGACAGCAACTA 59.812 40.000 0.00 0.00 0.00 2.24
3087 3129 4.019860 ACATTCTATCCAGTGACAGCAACT 60.020 41.667 0.00 0.00 0.00 3.16
3088 3130 4.256920 ACATTCTATCCAGTGACAGCAAC 58.743 43.478 0.00 0.00 0.00 4.17
3089 3131 4.020307 TGACATTCTATCCAGTGACAGCAA 60.020 41.667 0.00 0.00 0.00 3.91
3090 3132 3.515104 TGACATTCTATCCAGTGACAGCA 59.485 43.478 0.00 0.00 0.00 4.41
3091 3133 3.868077 GTGACATTCTATCCAGTGACAGC 59.132 47.826 0.00 0.00 0.00 4.40
3092 3134 4.108336 CGTGACATTCTATCCAGTGACAG 58.892 47.826 0.00 0.00 0.00 3.51
3093 3135 3.119137 CCGTGACATTCTATCCAGTGACA 60.119 47.826 0.00 0.00 0.00 3.58
3094 3136 3.448686 CCGTGACATTCTATCCAGTGAC 58.551 50.000 0.00 0.00 0.00 3.67
3095 3137 2.430694 CCCGTGACATTCTATCCAGTGA 59.569 50.000 0.00 0.00 0.00 3.41
3096 3138 2.168521 ACCCGTGACATTCTATCCAGTG 59.831 50.000 0.00 0.00 0.00 3.66
3097 3139 2.431057 GACCCGTGACATTCTATCCAGT 59.569 50.000 0.00 0.00 0.00 4.00
3098 3140 2.695666 AGACCCGTGACATTCTATCCAG 59.304 50.000 0.00 0.00 0.00 3.86
3099 3141 2.430694 CAGACCCGTGACATTCTATCCA 59.569 50.000 0.00 0.00 0.00 3.41
3100 3142 2.693591 TCAGACCCGTGACATTCTATCC 59.306 50.000 0.00 0.00 0.00 2.59
3101 3143 3.707793 GTCAGACCCGTGACATTCTATC 58.292 50.000 0.00 0.00 45.34 2.08
3102 3144 3.802948 GTCAGACCCGTGACATTCTAT 57.197 47.619 0.00 0.00 45.34 1.98
3115 3157 2.346365 GTGGGAACGGGTCAGACC 59.654 66.667 11.70 11.70 37.60 3.85
3116 3158 1.004918 CTGTGGGAACGGGTCAGAC 60.005 63.158 0.00 0.00 0.00 3.51
3117 3159 2.879233 GCTGTGGGAACGGGTCAGA 61.879 63.158 0.00 0.00 0.00 3.27
3118 3160 2.358737 GCTGTGGGAACGGGTCAG 60.359 66.667 0.00 0.00 0.00 3.51
3119 3161 3.948719 GGCTGTGGGAACGGGTCA 61.949 66.667 0.00 0.00 0.00 4.02
3120 3162 4.717313 GGGCTGTGGGAACGGGTC 62.717 72.222 0.00 0.00 0.00 4.46
3122 3164 3.583882 AATGGGCTGTGGGAACGGG 62.584 63.158 0.00 0.00 0.00 5.28
3123 3165 2.035626 AATGGGCTGTGGGAACGG 59.964 61.111 0.00 0.00 0.00 4.44
3124 3166 1.002134 AGAATGGGCTGTGGGAACG 60.002 57.895 0.00 0.00 0.00 3.95
3125 3167 1.026718 CGAGAATGGGCTGTGGGAAC 61.027 60.000 0.00 0.00 0.00 3.62
3126 3168 1.299648 CGAGAATGGGCTGTGGGAA 59.700 57.895 0.00 0.00 0.00 3.97
3127 3169 2.989639 CGAGAATGGGCTGTGGGA 59.010 61.111 0.00 0.00 0.00 4.37
3128 3170 2.825836 GCGAGAATGGGCTGTGGG 60.826 66.667 0.00 0.00 0.00 4.61
3129 3171 3.197790 CGCGAGAATGGGCTGTGG 61.198 66.667 0.00 0.00 0.00 4.17
3130 3172 1.970917 GAACGCGAGAATGGGCTGTG 61.971 60.000 15.93 0.00 0.00 3.66
3131 3173 1.741770 GAACGCGAGAATGGGCTGT 60.742 57.895 15.93 0.00 0.00 4.40
3132 3174 2.802667 CGAACGCGAGAATGGGCTG 61.803 63.158 15.93 0.00 40.82 4.85
3133 3175 2.509336 CGAACGCGAGAATGGGCT 60.509 61.111 15.93 0.00 40.82 5.19
3134 3176 3.564027 CCGAACGCGAGAATGGGC 61.564 66.667 15.93 0.00 40.82 5.36
3135 3177 0.458889 TAACCGAACGCGAGAATGGG 60.459 55.000 15.93 9.24 40.82 4.00
3136 3178 0.921347 CTAACCGAACGCGAGAATGG 59.079 55.000 15.93 9.66 40.82 3.16
3137 3179 1.582502 GACTAACCGAACGCGAGAATG 59.417 52.381 15.93 0.00 40.82 2.67
3138 3180 1.792993 CGACTAACCGAACGCGAGAAT 60.793 52.381 15.93 0.00 40.82 2.40
3139 3181 0.453282 CGACTAACCGAACGCGAGAA 60.453 55.000 15.93 0.00 40.82 2.87
3140 3182 1.133253 CGACTAACCGAACGCGAGA 59.867 57.895 15.93 0.00 40.82 4.04
3141 3183 0.453282 TTCGACTAACCGAACGCGAG 60.453 55.000 15.93 0.00 42.74 5.03
3142 3184 0.040514 TTTCGACTAACCGAACGCGA 60.041 50.000 15.93 0.00 46.56 5.87
3143 3185 0.361184 CTTTCGACTAACCGAACGCG 59.639 55.000 3.53 3.53 46.56 6.01
3144 3186 1.689959 TCTTTCGACTAACCGAACGC 58.310 50.000 0.00 0.00 46.56 4.84
3145 3187 2.406357 GGTTCTTTCGACTAACCGAACG 59.594 50.000 6.92 0.00 46.56 3.95
3146 3188 3.383761 TGGTTCTTTCGACTAACCGAAC 58.616 45.455 14.65 6.06 46.56 3.95
3147 3189 3.318839 TCTGGTTCTTTCGACTAACCGAA 59.681 43.478 14.65 0.00 44.62 4.30
3148 3190 2.886523 TCTGGTTCTTTCGACTAACCGA 59.113 45.455 14.65 12.36 44.62 4.69
3149 3191 3.293311 TCTGGTTCTTTCGACTAACCG 57.707 47.619 14.65 10.86 44.62 4.44
3150 3192 3.744942 GGTTCTGGTTCTTTCGACTAACC 59.255 47.826 13.37 13.37 42.49 2.85
3151 3193 4.629092 AGGTTCTGGTTCTTTCGACTAAC 58.371 43.478 0.00 0.00 0.00 2.34
3152 3194 4.950205 AGGTTCTGGTTCTTTCGACTAA 57.050 40.909 0.00 0.00 0.00 2.24
3153 3195 4.219288 GGTAGGTTCTGGTTCTTTCGACTA 59.781 45.833 0.00 0.00 0.00 2.59
3154 3196 3.006644 GGTAGGTTCTGGTTCTTTCGACT 59.993 47.826 0.00 0.00 0.00 4.18
3155 3197 3.324117 GGTAGGTTCTGGTTCTTTCGAC 58.676 50.000 0.00 0.00 0.00 4.20
3156 3198 2.301009 GGGTAGGTTCTGGTTCTTTCGA 59.699 50.000 0.00 0.00 0.00 3.71
3157 3199 2.696506 GGGTAGGTTCTGGTTCTTTCG 58.303 52.381 0.00 0.00 0.00 3.46
3158 3200 2.038164 ACGGGTAGGTTCTGGTTCTTTC 59.962 50.000 0.00 0.00 0.00 2.62
3159 3201 2.038164 GACGGGTAGGTTCTGGTTCTTT 59.962 50.000 0.00 0.00 0.00 2.52
3160 3202 1.622312 GACGGGTAGGTTCTGGTTCTT 59.378 52.381 0.00 0.00 0.00 2.52
3161 3203 1.264295 GACGGGTAGGTTCTGGTTCT 58.736 55.000 0.00 0.00 0.00 3.01
3162 3204 0.248565 GGACGGGTAGGTTCTGGTTC 59.751 60.000 0.00 0.00 0.00 3.62
3163 3205 1.196766 GGGACGGGTAGGTTCTGGTT 61.197 60.000 0.00 0.00 0.00 3.67
3164 3206 1.611556 GGGACGGGTAGGTTCTGGT 60.612 63.158 0.00 0.00 0.00 4.00
3165 3207 1.196104 TTGGGACGGGTAGGTTCTGG 61.196 60.000 0.00 0.00 0.00 3.86
3166 3208 0.249398 CTTGGGACGGGTAGGTTCTG 59.751 60.000 0.00 0.00 0.00 3.02
3167 3209 0.908180 CCTTGGGACGGGTAGGTTCT 60.908 60.000 0.00 0.00 0.00 3.01
3168 3210 0.906282 TCCTTGGGACGGGTAGGTTC 60.906 60.000 0.00 0.00 0.00 3.62
3169 3211 0.474273 TTCCTTGGGACGGGTAGGTT 60.474 55.000 0.00 0.00 0.00 3.50
3170 3212 1.159184 TTCCTTGGGACGGGTAGGT 59.841 57.895 0.00 0.00 0.00 3.08
3171 3213 1.600638 GTTCCTTGGGACGGGTAGG 59.399 63.158 0.00 0.00 0.00 3.18
3172 3214 1.217244 CGTTCCTTGGGACGGGTAG 59.783 63.158 12.39 0.00 0.00 3.18
3173 3215 2.285024 CCGTTCCTTGGGACGGGTA 61.285 63.158 27.29 0.00 40.23 3.69
3174 3216 3.633116 CCGTTCCTTGGGACGGGT 61.633 66.667 27.29 0.00 40.23 5.28
3175 3217 2.193087 ATTCCGTTCCTTGGGACGGG 62.193 60.000 32.01 17.72 42.34 5.28
3176 3218 0.538118 TATTCCGTTCCTTGGGACGG 59.462 55.000 28.62 28.62 42.92 4.79
3177 3219 2.614829 ATATTCCGTTCCTTGGGACG 57.385 50.000 13.20 13.20 30.46 4.79
3178 3220 2.870411 CGAATATTCCGTTCCTTGGGAC 59.130 50.000 9.87 0.00 30.46 4.46
3179 3221 2.743838 GCGAATATTCCGTTCCTTGGGA 60.744 50.000 9.87 0.00 0.00 4.37
3180 3222 1.602377 GCGAATATTCCGTTCCTTGGG 59.398 52.381 9.87 0.00 0.00 4.12
3181 3223 2.544267 GAGCGAATATTCCGTTCCTTGG 59.456 50.000 9.87 0.00 32.38 3.61
3182 3224 3.194861 TGAGCGAATATTCCGTTCCTTG 58.805 45.455 9.87 0.00 36.62 3.61
3183 3225 3.536956 TGAGCGAATATTCCGTTCCTT 57.463 42.857 9.87 0.00 36.62 3.36
3184 3226 3.753294 ATGAGCGAATATTCCGTTCCT 57.247 42.857 9.87 3.73 36.62 3.36
3185 3227 5.671329 GCATAATGAGCGAATATTCCGTTCC 60.671 44.000 9.87 0.00 36.62 3.62
3186 3228 5.316770 GCATAATGAGCGAATATTCCGTTC 58.683 41.667 9.87 11.95 37.68 3.95
3187 3229 5.283060 GCATAATGAGCGAATATTCCGTT 57.717 39.130 9.87 6.42 0.00 4.44
3188 3230 4.928661 GCATAATGAGCGAATATTCCGT 57.071 40.909 9.87 0.00 0.00 4.69
3199 3241 0.861837 CTCCGTTCCGCATAATGAGC 59.138 55.000 0.00 0.00 0.00 4.26
3200 3242 1.502231 CCTCCGTTCCGCATAATGAG 58.498 55.000 0.00 0.00 0.00 2.90
3201 3243 0.531974 GCCTCCGTTCCGCATAATGA 60.532 55.000 0.00 0.00 0.00 2.57
3202 3244 0.813610 TGCCTCCGTTCCGCATAATG 60.814 55.000 0.00 0.00 0.00 1.90
3203 3245 0.108585 ATGCCTCCGTTCCGCATAAT 59.891 50.000 0.00 0.00 41.32 1.28
3204 3246 0.753867 TATGCCTCCGTTCCGCATAA 59.246 50.000 0.00 0.00 41.30 1.90
3205 3247 0.032952 GTATGCCTCCGTTCCGCATA 59.967 55.000 0.00 0.00 42.91 3.14
3206 3248 1.227556 GTATGCCTCCGTTCCGCAT 60.228 57.895 0.00 0.00 44.98 4.73
3207 3249 2.185867 GTATGCCTCCGTTCCGCA 59.814 61.111 0.00 0.00 36.84 5.69
3208 3250 2.588034 GGTATGCCTCCGTTCCGC 60.588 66.667 0.00 0.00 0.00 5.54
3209 3251 3.217231 AGGTATGCCTCCGTTCCG 58.783 61.111 0.00 0.00 42.67 4.30
3218 3260 1.230324 GCTCGATTTGGAGGTATGCC 58.770 55.000 0.00 0.00 34.56 4.40
3219 3261 0.861837 CGCTCGATTTGGAGGTATGC 59.138 55.000 0.00 0.00 34.56 3.14
3220 3262 1.068588 TCCGCTCGATTTGGAGGTATG 59.931 52.381 0.00 0.00 34.56 2.39
3221 3263 1.068741 GTCCGCTCGATTTGGAGGTAT 59.931 52.381 1.05 0.00 34.56 2.73
3222 3264 0.458669 GTCCGCTCGATTTGGAGGTA 59.541 55.000 1.05 0.00 34.56 3.08
3223 3265 1.218316 GTCCGCTCGATTTGGAGGT 59.782 57.895 1.05 0.00 34.56 3.85
3224 3266 1.878522 CGTCCGCTCGATTTGGAGG 60.879 63.158 1.05 3.89 34.56 4.30
3225 3267 1.138883 TCGTCCGCTCGATTTGGAG 59.861 57.895 1.05 0.00 34.85 3.86
3226 3268 1.153901 GTCGTCCGCTCGATTTGGA 60.154 57.895 3.79 0.00 41.78 3.53
3227 3269 1.413767 CTGTCGTCCGCTCGATTTGG 61.414 60.000 3.79 0.00 41.78 3.28
3228 3270 1.413767 CCTGTCGTCCGCTCGATTTG 61.414 60.000 3.79 0.00 41.78 2.32
3229 3271 1.153823 CCTGTCGTCCGCTCGATTT 60.154 57.895 3.79 0.00 41.78 2.17
3230 3272 2.490217 CCTGTCGTCCGCTCGATT 59.510 61.111 3.79 0.00 41.78 3.34
3231 3273 3.518998 CCCTGTCGTCCGCTCGAT 61.519 66.667 3.79 0.00 41.78 3.59
3232 3274 4.710167 TCCCTGTCGTCCGCTCGA 62.710 66.667 0.00 0.00 37.51 4.04
3233 3275 3.744719 TTCCCTGTCGTCCGCTCG 61.745 66.667 0.00 0.00 0.00 5.03
3234 3276 2.126031 GTTCCCTGTCGTCCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
3235 3277 4.052229 CGTTCCCTGTCGTCCGCT 62.052 66.667 0.00 0.00 0.00 5.52
3236 3278 3.966026 CTCGTTCCCTGTCGTCCGC 62.966 68.421 0.00 0.00 0.00 5.54
3237 3279 2.178521 CTCGTTCCCTGTCGTCCG 59.821 66.667 0.00 0.00 0.00 4.79
3238 3280 2.126031 GCTCGTTCCCTGTCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
3239 3281 2.126031 GGCTCGTTCCCTGTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
3240 3282 3.692406 GGGCTCGTTCCCTGTCGT 61.692 66.667 7.36 0.00 43.13 4.34
3246 3288 2.585153 GGAAGAGGGCTCGTTCCC 59.415 66.667 9.14 6.63 46.93 3.97
3247 3289 2.585153 GGGAAGAGGGCTCGTTCC 59.415 66.667 11.39 11.39 36.77 3.62
3248 3290 1.962321 GAGGGGAAGAGGGCTCGTTC 61.962 65.000 0.00 0.00 34.09 3.95
3249 3291 1.990614 GAGGGGAAGAGGGCTCGTT 60.991 63.158 0.00 0.00 34.09 3.85
3250 3292 2.364448 GAGGGGAAGAGGGCTCGT 60.364 66.667 0.00 0.00 34.09 4.18
3251 3293 2.042435 AGAGGGGAAGAGGGCTCG 60.042 66.667 0.00 0.00 34.09 5.03
3252 3294 2.131067 CGAGAGGGGAAGAGGGCTC 61.131 68.421 0.00 0.00 0.00 4.70
3253 3295 2.042435 CGAGAGGGGAAGAGGGCT 60.042 66.667 0.00 0.00 0.00 5.19
3254 3296 3.855853 GCGAGAGGGGAAGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
3255 3297 2.364317 TGCGAGAGGGGAAGAGGG 60.364 66.667 0.00 0.00 0.00 4.30
3256 3298 2.896443 GTGCGAGAGGGGAAGAGG 59.104 66.667 0.00 0.00 0.00 3.69
3257 3299 2.492090 CGTGCGAGAGGGGAAGAG 59.508 66.667 0.00 0.00 0.00 2.85
3258 3300 3.760035 GCGTGCGAGAGGGGAAGA 61.760 66.667 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.