Multiple sequence alignment - TraesCS6D01G284800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G284800 chr6D 100.000 2758 0 0 1 2758 392524806 392522049 0.000000e+00 5094.0
1 TraesCS6D01G284800 chr6D 82.540 126 16 3 541 661 433644548 433644672 3.760000e-19 106.0
2 TraesCS6D01G284800 chr6B 95.697 1162 48 2 585 1746 585958431 585957272 0.000000e+00 1868.0
3 TraesCS6D01G284800 chr6B 95.789 285 12 0 2257 2541 585954817 585954533 6.960000e-126 460.0
4 TraesCS6D01G284800 chr6B 90.213 235 19 1 2528 2758 585954139 585953905 1.240000e-78 303.0
5 TraesCS6D01G284800 chr6B 83.333 180 18 10 537 709 41755954 41756128 3.680000e-34 156.0
6 TraesCS6D01G284800 chr6B 95.349 43 2 0 2216 2258 576351166 576351124 4.930000e-08 69.4
7 TraesCS6D01G284800 chr4A 89.512 1373 98 22 474 1831 229494175 229492834 0.000000e+00 1696.0
8 TraesCS6D01G284800 chr4A 86.435 317 28 5 1522 1831 229467899 229467591 1.580000e-87 333.0
9 TraesCS6D01G284800 chr4A 97.368 38 1 0 2216 2253 183174963 183175000 6.380000e-07 65.8
10 TraesCS6D01G284800 chr4D 92.721 1099 65 8 735 1831 144820165 144819080 0.000000e+00 1572.0
11 TraesCS6D01G284800 chr4D 89.677 310 17 7 1522 1831 144411446 144411152 5.570000e-102 381.0
12 TraesCS6D01G284800 chr4B 86.758 1382 141 27 474 1831 199811565 199812928 0.000000e+00 1500.0
13 TraesCS6D01G284800 chrUn 87.113 194 10 3 273 465 136319442 136319263 3.600000e-49 206.0
14 TraesCS6D01G284800 chrUn 92.308 91 7 0 36 126 136320214 136320124 2.230000e-26 130.0
15 TraesCS6D01G284800 chr3B 88.722 133 12 3 259 389 766016456 766016587 2.840000e-35 159.0
16 TraesCS6D01G284800 chr1D 84.354 147 18 4 541 683 377200905 377200760 3.700000e-29 139.0
17 TraesCS6D01G284800 chr1D 88.462 52 2 4 1 50 33857278 33857229 2.970000e-05 60.2
18 TraesCS6D01G284800 chr2A 100.000 40 0 0 1 40 752398436 752398397 1.060000e-09 75.0
19 TraesCS6D01G284800 chr3A 100.000 38 0 0 1 38 492044011 492044048 1.370000e-08 71.3
20 TraesCS6D01G284800 chr3D 100.000 36 0 0 1 36 545256757 545256792 1.770000e-07 67.6
21 TraesCS6D01G284800 chr7A 95.122 41 2 0 2216 2256 722436559 722436599 6.380000e-07 65.8
22 TraesCS6D01G284800 chr6A 100.000 35 0 0 1 35 606095603 606095569 6.380000e-07 65.8
23 TraesCS6D01G284800 chr5D 100.000 35 0 0 1 35 439230701 439230667 6.380000e-07 65.8
24 TraesCS6D01G284800 chr5A 97.368 38 1 0 1 38 564772642 564772679 6.380000e-07 65.8
25 TraesCS6D01G284800 chr2D 97.436 39 0 1 1 38 20847320 20847358 6.380000e-07 65.8
26 TraesCS6D01G284800 chr2D 97.436 39 0 1 1 38 564703844 564703806 6.380000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G284800 chr6D 392522049 392524806 2757 True 5094 5094 100.000000 1 2758 1 chr6D.!!$R1 2757
1 TraesCS6D01G284800 chr6B 585953905 585958431 4526 True 877 1868 93.899667 585 2758 3 chr6B.!!$R2 2173
2 TraesCS6D01G284800 chr4A 229492834 229494175 1341 True 1696 1696 89.512000 474 1831 1 chr4A.!!$R2 1357
3 TraesCS6D01G284800 chr4D 144819080 144820165 1085 True 1572 1572 92.721000 735 1831 1 chr4D.!!$R2 1096
4 TraesCS6D01G284800 chr4B 199811565 199812928 1363 False 1500 1500 86.758000 474 1831 1 chr4B.!!$F1 1357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.035725 CTCATCAAGCTGTCCTGCCA 60.036 55.0 0.0 0.0 0.00 4.92 F
371 372 0.035915 GAAGGTTGTCCCAGAGAGGC 60.036 60.0 0.0 0.0 35.39 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1296 0.244178 GACCTTCTTCCTCGTCGCTT 59.756 55.0 0.00 0.00 0.00 4.68 R
2234 4289 0.034089 AGGGAATCTTTTCTGGCCGG 60.034 55.0 4.71 4.71 32.16 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.722193 CACCCGAGTGCTCCAAAT 57.278 55.556 0.00 0.00 37.14 2.32
27 28 2.471255 CACCCGAGTGCTCCAAATC 58.529 57.895 0.00 0.00 37.14 2.17
28 29 1.026718 CACCCGAGTGCTCCAAATCC 61.027 60.000 0.00 0.00 37.14 3.01
29 30 1.201429 ACCCGAGTGCTCCAAATCCT 61.201 55.000 0.00 0.00 0.00 3.24
30 31 0.462759 CCCGAGTGCTCCAAATCCTC 60.463 60.000 0.00 0.00 0.00 3.71
31 32 0.807667 CCGAGTGCTCCAAATCCTCG 60.808 60.000 0.00 0.00 43.36 4.63
32 33 0.108615 CGAGTGCTCCAAATCCTCGT 60.109 55.000 0.00 0.00 39.96 4.18
33 34 1.646189 GAGTGCTCCAAATCCTCGTC 58.354 55.000 0.00 0.00 0.00 4.20
34 35 0.250513 AGTGCTCCAAATCCTCGTCC 59.749 55.000 0.00 0.00 0.00 4.79
35 36 0.036388 GTGCTCCAAATCCTCGTCCA 60.036 55.000 0.00 0.00 0.00 4.02
36 37 0.911769 TGCTCCAAATCCTCGTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
37 38 1.303309 GCTCCAAATCCTCGTCCATG 58.697 55.000 0.00 0.00 0.00 3.66
38 39 1.959042 CTCCAAATCCTCGTCCATGG 58.041 55.000 4.97 4.97 0.00 3.66
39 40 1.486310 CTCCAAATCCTCGTCCATGGA 59.514 52.381 11.44 11.44 35.74 3.41
40 41 1.486310 TCCAAATCCTCGTCCATGGAG 59.514 52.381 16.81 9.76 35.63 3.86
41 42 1.210478 CCAAATCCTCGTCCATGGAGT 59.790 52.381 16.81 0.00 35.63 3.85
42 43 2.434336 CCAAATCCTCGTCCATGGAGTA 59.566 50.000 16.81 5.13 35.63 2.59
43 44 3.458189 CAAATCCTCGTCCATGGAGTAC 58.542 50.000 16.81 2.89 35.63 2.73
44 45 2.757894 ATCCTCGTCCATGGAGTACT 57.242 50.000 16.81 0.00 35.63 2.73
45 46 1.763968 TCCTCGTCCATGGAGTACTG 58.236 55.000 16.81 3.20 0.00 2.74
46 47 0.103208 CCTCGTCCATGGAGTACTGC 59.897 60.000 16.81 7.56 0.00 4.40
47 48 1.107114 CTCGTCCATGGAGTACTGCT 58.893 55.000 16.81 0.00 0.00 4.24
48 49 1.066303 CTCGTCCATGGAGTACTGCTC 59.934 57.143 16.81 0.00 43.39 4.26
49 50 1.107114 CGTCCATGGAGTACTGCTCT 58.893 55.000 16.81 0.08 43.62 4.09
50 51 1.478510 CGTCCATGGAGTACTGCTCTT 59.521 52.381 16.81 0.00 43.62 2.85
51 52 2.093973 CGTCCATGGAGTACTGCTCTTT 60.094 50.000 16.81 0.00 43.62 2.52
52 53 3.130516 CGTCCATGGAGTACTGCTCTTTA 59.869 47.826 16.81 0.00 43.62 1.85
53 54 4.202161 CGTCCATGGAGTACTGCTCTTTAT 60.202 45.833 16.81 0.00 43.62 1.40
54 55 5.675538 GTCCATGGAGTACTGCTCTTTATT 58.324 41.667 16.81 0.00 43.62 1.40
55 56 6.116126 GTCCATGGAGTACTGCTCTTTATTT 58.884 40.000 16.81 0.00 43.62 1.40
56 57 6.599638 GTCCATGGAGTACTGCTCTTTATTTT 59.400 38.462 16.81 0.00 43.62 1.82
57 58 6.823689 TCCATGGAGTACTGCTCTTTATTTTC 59.176 38.462 11.44 0.00 43.62 2.29
58 59 6.825721 CCATGGAGTACTGCTCTTTATTTTCT 59.174 38.462 15.92 0.00 43.62 2.52
59 60 7.011857 CCATGGAGTACTGCTCTTTATTTTCTC 59.988 40.741 15.92 0.00 43.62 2.87
60 61 6.407202 TGGAGTACTGCTCTTTATTTTCTCC 58.593 40.000 15.92 0.00 43.62 3.71
61 62 6.213600 TGGAGTACTGCTCTTTATTTTCTCCT 59.786 38.462 15.92 0.00 43.62 3.69
62 63 6.759356 GGAGTACTGCTCTTTATTTTCTCCTC 59.241 42.308 7.20 0.00 43.62 3.71
63 64 7.364320 GGAGTACTGCTCTTTATTTTCTCCTCT 60.364 40.741 7.20 0.00 43.62 3.69
64 65 7.552459 AGTACTGCTCTTTATTTTCTCCTCTC 58.448 38.462 0.00 0.00 0.00 3.20
65 66 5.739959 ACTGCTCTTTATTTTCTCCTCTCC 58.260 41.667 0.00 0.00 0.00 3.71
66 67 5.104259 TGCTCTTTATTTTCTCCTCTCCC 57.896 43.478 0.00 0.00 0.00 4.30
67 68 4.536090 TGCTCTTTATTTTCTCCTCTCCCA 59.464 41.667 0.00 0.00 0.00 4.37
68 69 5.014123 TGCTCTTTATTTTCTCCTCTCCCAA 59.986 40.000 0.00 0.00 0.00 4.12
69 70 5.946377 GCTCTTTATTTTCTCCTCTCCCAAA 59.054 40.000 0.00 0.00 0.00 3.28
70 71 6.434340 GCTCTTTATTTTCTCCTCTCCCAAAA 59.566 38.462 0.00 0.00 0.00 2.44
71 72 7.123397 GCTCTTTATTTTCTCCTCTCCCAAAAT 59.877 37.037 0.00 0.00 33.89 1.82
72 73 9.686683 CTCTTTATTTTCTCCTCTCCCAAAATA 57.313 33.333 0.00 0.00 32.17 1.40
81 82 9.447279 TTCTCCTCTCCCAAAATATATTAGACA 57.553 33.333 0.00 0.00 0.00 3.41
82 83 9.447279 TCTCCTCTCCCAAAATATATTAGACAA 57.553 33.333 0.00 0.00 0.00 3.18
102 103 8.868522 AGACAATTTGAGGAAAGATTGTATCA 57.131 30.769 2.79 0.00 41.37 2.15
103 104 8.734386 AGACAATTTGAGGAAAGATTGTATCAC 58.266 33.333 2.79 0.00 41.37 3.06
104 105 8.408043 ACAATTTGAGGAAAGATTGTATCACA 57.592 30.769 2.79 0.00 40.00 3.58
105 106 9.028284 ACAATTTGAGGAAAGATTGTATCACAT 57.972 29.630 2.79 0.00 40.00 3.21
106 107 9.512435 CAATTTGAGGAAAGATTGTATCACATC 57.488 33.333 0.00 0.00 0.00 3.06
107 108 7.630242 TTTGAGGAAAGATTGTATCACATCC 57.370 36.000 0.00 0.00 0.00 3.51
108 109 6.566079 TGAGGAAAGATTGTATCACATCCT 57.434 37.500 0.00 0.00 39.22 3.24
109 110 6.962182 TGAGGAAAGATTGTATCACATCCTT 58.038 36.000 0.00 0.00 37.73 3.36
110 111 7.050377 TGAGGAAAGATTGTATCACATCCTTC 58.950 38.462 0.00 0.00 37.73 3.46
111 112 7.092712 TGAGGAAAGATTGTATCACATCCTTCT 60.093 37.037 0.00 0.00 37.73 2.85
112 113 8.324191 AGGAAAGATTGTATCACATCCTTCTA 57.676 34.615 0.00 0.00 35.62 2.10
113 114 8.772250 AGGAAAGATTGTATCACATCCTTCTAA 58.228 33.333 0.00 0.00 35.62 2.10
114 115 9.396022 GGAAAGATTGTATCACATCCTTCTAAA 57.604 33.333 0.00 0.00 0.00 1.85
135 136 5.914898 AAAAAGGTACATGCCAAGATACC 57.085 39.130 0.00 0.00 37.88 2.73
136 137 4.584638 AAAGGTACATGCCAAGATACCA 57.415 40.909 9.80 0.00 39.72 3.25
137 138 3.845781 AGGTACATGCCAAGATACCAG 57.154 47.619 9.80 0.00 39.72 4.00
138 139 3.384168 AGGTACATGCCAAGATACCAGA 58.616 45.455 9.80 0.00 39.72 3.86
139 140 3.134804 AGGTACATGCCAAGATACCAGAC 59.865 47.826 9.80 0.00 39.72 3.51
140 141 3.118408 GGTACATGCCAAGATACCAGACA 60.118 47.826 0.00 0.00 37.59 3.41
141 142 3.719268 ACATGCCAAGATACCAGACAA 57.281 42.857 0.00 0.00 0.00 3.18
142 143 3.347216 ACATGCCAAGATACCAGACAAC 58.653 45.455 0.00 0.00 0.00 3.32
143 144 3.009473 ACATGCCAAGATACCAGACAACT 59.991 43.478 0.00 0.00 0.00 3.16
144 145 4.225042 ACATGCCAAGATACCAGACAACTA 59.775 41.667 0.00 0.00 0.00 2.24
145 146 5.104360 ACATGCCAAGATACCAGACAACTAT 60.104 40.000 0.00 0.00 0.00 2.12
146 147 6.099701 ACATGCCAAGATACCAGACAACTATA 59.900 38.462 0.00 0.00 0.00 1.31
147 148 6.161855 TGCCAAGATACCAGACAACTATAG 57.838 41.667 0.00 0.00 0.00 1.31
148 149 5.070446 TGCCAAGATACCAGACAACTATAGG 59.930 44.000 4.43 0.00 0.00 2.57
149 150 5.542779 CCAAGATACCAGACAACTATAGGC 58.457 45.833 4.43 0.00 0.00 3.93
150 151 5.070446 CCAAGATACCAGACAACTATAGGCA 59.930 44.000 4.43 0.00 0.00 4.75
151 152 6.219473 CAAGATACCAGACAACTATAGGCAG 58.781 44.000 4.43 0.00 0.00 4.85
152 153 5.706447 AGATACCAGACAACTATAGGCAGA 58.294 41.667 4.43 0.00 0.00 4.26
153 154 6.136857 AGATACCAGACAACTATAGGCAGAA 58.863 40.000 4.43 0.00 0.00 3.02
154 155 4.744795 ACCAGACAACTATAGGCAGAAG 57.255 45.455 4.43 0.00 0.00 2.85
155 156 3.118592 ACCAGACAACTATAGGCAGAAGC 60.119 47.826 4.43 0.00 41.10 3.86
156 157 3.133721 CCAGACAACTATAGGCAGAAGCT 59.866 47.826 4.43 0.00 41.70 3.74
157 158 4.367450 CAGACAACTATAGGCAGAAGCTC 58.633 47.826 4.43 0.00 41.70 4.09
158 159 3.386402 AGACAACTATAGGCAGAAGCTCC 59.614 47.826 4.43 0.00 41.70 4.70
159 160 2.436173 ACAACTATAGGCAGAAGCTCCC 59.564 50.000 4.43 0.00 41.70 4.30
160 161 2.703007 CAACTATAGGCAGAAGCTCCCT 59.297 50.000 4.43 0.00 41.70 4.20
161 162 2.604139 ACTATAGGCAGAAGCTCCCTC 58.396 52.381 4.43 0.00 41.70 4.30
162 163 1.543802 CTATAGGCAGAAGCTCCCTCG 59.456 57.143 0.00 0.00 41.70 4.63
163 164 1.118356 ATAGGCAGAAGCTCCCTCGG 61.118 60.000 0.00 0.00 41.70 4.63
164 165 2.516048 TAGGCAGAAGCTCCCTCGGT 62.516 60.000 0.00 0.00 41.70 4.69
165 166 2.185608 GCAGAAGCTCCCTCGGTC 59.814 66.667 0.00 0.00 37.91 4.79
166 167 2.896443 CAGAAGCTCCCTCGGTCC 59.104 66.667 0.00 0.00 0.00 4.46
167 168 2.364448 AGAAGCTCCCTCGGTCCC 60.364 66.667 0.00 0.00 0.00 4.46
168 169 2.364448 GAAGCTCCCTCGGTCCCT 60.364 66.667 0.00 0.00 0.00 4.20
169 170 2.364448 AAGCTCCCTCGGTCCCTC 60.364 66.667 0.00 0.00 0.00 4.30
170 171 3.239627 AAGCTCCCTCGGTCCCTCA 62.240 63.158 0.00 0.00 0.00 3.86
171 172 2.444895 GCTCCCTCGGTCCCTCAT 60.445 66.667 0.00 0.00 0.00 2.90
172 173 2.503382 GCTCCCTCGGTCCCTCATC 61.503 68.421 0.00 0.00 0.00 2.92
173 174 1.075970 CTCCCTCGGTCCCTCATCA 60.076 63.158 0.00 0.00 0.00 3.07
174 175 0.687757 CTCCCTCGGTCCCTCATCAA 60.688 60.000 0.00 0.00 0.00 2.57
175 176 0.687757 TCCCTCGGTCCCTCATCAAG 60.688 60.000 0.00 0.00 0.00 3.02
176 177 1.144936 CCTCGGTCCCTCATCAAGC 59.855 63.158 0.00 0.00 0.00 4.01
177 178 1.333636 CCTCGGTCCCTCATCAAGCT 61.334 60.000 0.00 0.00 0.00 3.74
178 179 0.179089 CTCGGTCCCTCATCAAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
179 180 0.904865 TCGGTCCCTCATCAAGCTGT 60.905 55.000 0.00 0.00 0.00 4.40
180 181 0.460987 CGGTCCCTCATCAAGCTGTC 60.461 60.000 0.00 0.00 0.00 3.51
181 182 0.107459 GGTCCCTCATCAAGCTGTCC 60.107 60.000 0.00 0.00 0.00 4.02
182 183 0.908198 GTCCCTCATCAAGCTGTCCT 59.092 55.000 0.00 0.00 0.00 3.85
183 184 0.907486 TCCCTCATCAAGCTGTCCTG 59.093 55.000 0.00 0.00 0.00 3.86
184 185 0.747283 CCCTCATCAAGCTGTCCTGC 60.747 60.000 0.00 0.00 0.00 4.85
185 186 0.747283 CCTCATCAAGCTGTCCTGCC 60.747 60.000 0.00 0.00 0.00 4.85
186 187 0.035725 CTCATCAAGCTGTCCTGCCA 60.036 55.000 0.00 0.00 0.00 4.92
187 188 0.321919 TCATCAAGCTGTCCTGCCAC 60.322 55.000 0.00 0.00 0.00 5.01
188 189 1.376424 ATCAAGCTGTCCTGCCACG 60.376 57.895 0.00 0.00 0.00 4.94
189 190 2.809861 ATCAAGCTGTCCTGCCACGG 62.810 60.000 0.00 0.00 0.00 4.94
190 191 3.241530 AAGCTGTCCTGCCACGGA 61.242 61.111 0.00 0.00 0.00 4.69
191 192 2.818169 AAGCTGTCCTGCCACGGAA 61.818 57.895 0.00 0.00 34.20 4.30
192 193 2.738213 AAGCTGTCCTGCCACGGAAG 62.738 60.000 0.00 0.00 34.20 3.46
193 194 2.046892 CTGTCCTGCCACGGAAGG 60.047 66.667 3.29 3.29 42.46 3.46
194 195 3.612247 CTGTCCTGCCACGGAAGGG 62.612 68.421 10.46 0.00 41.40 3.95
202 203 2.358737 CACGGAAGGGGCACTGAC 60.359 66.667 0.00 0.00 0.00 3.51
203 204 3.637273 ACGGAAGGGGCACTGACC 61.637 66.667 0.00 0.00 0.00 4.02
204 205 3.636231 CGGAAGGGGCACTGACCA 61.636 66.667 2.46 0.00 27.52 4.02
205 206 2.352805 GGAAGGGGCACTGACCAG 59.647 66.667 2.46 0.00 27.52 4.00
206 207 2.360475 GAAGGGGCACTGACCAGC 60.360 66.667 2.46 0.00 27.52 4.85
207 208 2.856000 AAGGGGCACTGACCAGCT 60.856 61.111 2.46 0.00 27.52 4.24
208 209 2.417558 GAAGGGGCACTGACCAGCTT 62.418 60.000 2.46 0.00 27.52 3.74
209 210 2.360475 GGGGCACTGACCAGCTTC 60.360 66.667 2.46 0.00 27.52 3.86
210 211 2.753029 GGGCACTGACCAGCTTCT 59.247 61.111 0.00 0.00 0.00 2.85
211 212 1.376553 GGGCACTGACCAGCTTCTC 60.377 63.158 0.00 0.00 0.00 2.87
212 213 1.376553 GGCACTGACCAGCTTCTCC 60.377 63.158 0.00 0.00 0.00 3.71
213 214 1.372683 GCACTGACCAGCTTCTCCA 59.627 57.895 0.00 0.00 0.00 3.86
214 215 0.952984 GCACTGACCAGCTTCTCCAC 60.953 60.000 0.00 0.00 0.00 4.02
215 216 0.321122 CACTGACCAGCTTCTCCACC 60.321 60.000 0.00 0.00 0.00 4.61
216 217 0.764369 ACTGACCAGCTTCTCCACCA 60.764 55.000 0.00 0.00 0.00 4.17
217 218 0.321122 CTGACCAGCTTCTCCACCAC 60.321 60.000 0.00 0.00 0.00 4.16
218 219 1.053835 TGACCAGCTTCTCCACCACA 61.054 55.000 0.00 0.00 0.00 4.17
219 220 0.603975 GACCAGCTTCTCCACCACAC 60.604 60.000 0.00 0.00 0.00 3.82
220 221 1.669115 CCAGCTTCTCCACCACACG 60.669 63.158 0.00 0.00 0.00 4.49
221 222 2.031163 AGCTTCTCCACCACACGC 59.969 61.111 0.00 0.00 0.00 5.34
222 223 2.031163 GCTTCTCCACCACACGCT 59.969 61.111 0.00 0.00 0.00 5.07
223 224 1.185618 AGCTTCTCCACCACACGCTA 61.186 55.000 0.00 0.00 0.00 4.26
224 225 0.320421 GCTTCTCCACCACACGCTAA 60.320 55.000 0.00 0.00 0.00 3.09
225 226 1.714794 CTTCTCCACCACACGCTAAG 58.285 55.000 0.00 0.00 0.00 2.18
226 227 0.320421 TTCTCCACCACACGCTAAGC 60.320 55.000 0.00 0.00 0.00 3.09
227 228 1.005037 CTCCACCACACGCTAAGCA 60.005 57.895 0.00 0.00 0.00 3.91
228 229 0.602638 CTCCACCACACGCTAAGCAA 60.603 55.000 0.00 0.00 0.00 3.91
229 230 0.179043 TCCACCACACGCTAAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
230 231 0.665835 CCACCACACGCTAAGCAAAA 59.334 50.000 0.00 0.00 0.00 2.44
231 232 1.269448 CCACCACACGCTAAGCAAAAT 59.731 47.619 0.00 0.00 0.00 1.82
232 233 2.288152 CCACCACACGCTAAGCAAAATT 60.288 45.455 0.00 0.00 0.00 1.82
233 234 2.979813 CACCACACGCTAAGCAAAATTC 59.020 45.455 0.00 0.00 0.00 2.17
234 235 2.884639 ACCACACGCTAAGCAAAATTCT 59.115 40.909 0.00 0.00 0.00 2.40
235 236 4.069304 ACCACACGCTAAGCAAAATTCTA 58.931 39.130 0.00 0.00 0.00 2.10
236 237 4.700213 ACCACACGCTAAGCAAAATTCTAT 59.300 37.500 0.00 0.00 0.00 1.98
237 238 5.030295 CCACACGCTAAGCAAAATTCTATG 58.970 41.667 0.00 0.00 0.00 2.23
238 239 4.496895 CACACGCTAAGCAAAATTCTATGC 59.503 41.667 3.37 3.37 42.87 3.14
239 240 4.155826 ACACGCTAAGCAAAATTCTATGCA 59.844 37.500 11.82 0.00 44.95 3.96
240 241 5.163622 ACACGCTAAGCAAAATTCTATGCAT 60.164 36.000 3.79 3.79 44.95 3.96
241 242 5.745294 CACGCTAAGCAAAATTCTATGCATT 59.255 36.000 3.54 6.98 44.95 3.56
242 243 6.912051 CACGCTAAGCAAAATTCTATGCATTA 59.088 34.615 3.54 0.00 44.95 1.90
243 244 7.112565 CACGCTAAGCAAAATTCTATGCATTAG 59.887 37.037 3.54 14.20 44.95 1.73
244 245 6.087291 CGCTAAGCAAAATTCTATGCATTAGC 59.913 38.462 23.39 23.39 44.53 3.09
245 246 6.087291 GCTAAGCAAAATTCTATGCATTAGCG 59.913 38.462 21.56 0.00 44.95 4.26
246 247 4.863491 AGCAAAATTCTATGCATTAGCGG 58.137 39.130 3.54 0.00 44.95 5.52
247 248 3.426525 GCAAAATTCTATGCATTAGCGGC 59.573 43.478 3.54 0.00 46.23 6.53
248 249 3.923017 AAATTCTATGCATTAGCGGCC 57.077 42.857 3.54 0.00 46.23 6.13
249 250 2.566833 ATTCTATGCATTAGCGGCCA 57.433 45.000 3.54 0.00 46.23 5.36
250 251 1.882912 TTCTATGCATTAGCGGCCAG 58.117 50.000 3.54 0.00 46.23 4.85
251 252 1.047801 TCTATGCATTAGCGGCCAGA 58.952 50.000 3.54 0.00 46.23 3.86
252 253 1.001293 TCTATGCATTAGCGGCCAGAG 59.999 52.381 3.54 0.00 46.23 3.35
253 254 0.758734 TATGCATTAGCGGCCAGAGT 59.241 50.000 3.54 0.00 46.23 3.24
254 255 0.758734 ATGCATTAGCGGCCAGAGTA 59.241 50.000 2.24 0.00 46.23 2.59
255 256 0.758734 TGCATTAGCGGCCAGAGTAT 59.241 50.000 2.24 0.00 46.23 2.12
256 257 1.140852 TGCATTAGCGGCCAGAGTATT 59.859 47.619 2.24 0.00 46.23 1.89
257 258 2.367241 TGCATTAGCGGCCAGAGTATTA 59.633 45.455 2.24 0.00 46.23 0.98
258 259 2.737252 GCATTAGCGGCCAGAGTATTAC 59.263 50.000 2.24 0.00 0.00 1.89
259 260 3.802329 GCATTAGCGGCCAGAGTATTACA 60.802 47.826 2.24 0.00 0.00 2.41
260 261 4.569943 CATTAGCGGCCAGAGTATTACAT 58.430 43.478 2.24 0.00 0.00 2.29
261 262 5.720202 CATTAGCGGCCAGAGTATTACATA 58.280 41.667 2.24 0.00 0.00 2.29
262 263 5.995565 TTAGCGGCCAGAGTATTACATAT 57.004 39.130 2.24 0.00 0.00 1.78
263 264 4.457834 AGCGGCCAGAGTATTACATATC 57.542 45.455 2.24 0.00 0.00 1.63
264 265 3.832490 AGCGGCCAGAGTATTACATATCA 59.168 43.478 2.24 0.00 0.00 2.15
265 266 4.467795 AGCGGCCAGAGTATTACATATCAT 59.532 41.667 2.24 0.00 0.00 2.45
266 267 5.656859 AGCGGCCAGAGTATTACATATCATA 59.343 40.000 2.24 0.00 0.00 2.15
267 268 6.325028 AGCGGCCAGAGTATTACATATCATAT 59.675 38.462 2.24 0.00 0.00 1.78
268 269 6.986817 GCGGCCAGAGTATTACATATCATATT 59.013 38.462 2.24 0.00 0.00 1.28
269 270 7.042456 GCGGCCAGAGTATTACATATCATATTG 60.042 40.741 2.24 0.00 0.00 1.90
270 271 8.197439 CGGCCAGAGTATTACATATCATATTGA 58.803 37.037 2.24 0.00 0.00 2.57
271 272 9.319143 GGCCAGAGTATTACATATCATATTGAC 57.681 37.037 0.00 0.00 0.00 3.18
272 273 9.319143 GCCAGAGTATTACATATCATATTGACC 57.681 37.037 0.00 0.00 0.00 4.02
286 287 8.879342 ATCATATTGACCTAAGTTCTTTCTCG 57.121 34.615 0.00 0.00 0.00 4.04
287 288 6.757010 TCATATTGACCTAAGTTCTTTCTCGC 59.243 38.462 0.00 0.00 0.00 5.03
288 289 4.330944 TTGACCTAAGTTCTTTCTCGCA 57.669 40.909 0.00 0.00 0.00 5.10
289 290 3.914312 TGACCTAAGTTCTTTCTCGCAG 58.086 45.455 0.00 0.00 0.00 5.18
290 291 3.572682 TGACCTAAGTTCTTTCTCGCAGA 59.427 43.478 0.00 0.00 0.00 4.26
291 292 4.038763 TGACCTAAGTTCTTTCTCGCAGAA 59.961 41.667 0.00 0.00 34.09 3.02
292 293 4.561105 ACCTAAGTTCTTTCTCGCAGAAG 58.439 43.478 0.00 0.00 35.37 2.85
293 294 4.039366 ACCTAAGTTCTTTCTCGCAGAAGT 59.961 41.667 0.00 0.00 35.37 3.01
294 295 5.243283 ACCTAAGTTCTTTCTCGCAGAAGTA 59.757 40.000 0.00 0.00 35.37 2.24
295 296 5.802956 CCTAAGTTCTTTCTCGCAGAAGTAG 59.197 44.000 0.00 0.00 35.37 2.57
296 297 4.181309 AGTTCTTTCTCGCAGAAGTAGG 57.819 45.455 0.00 0.00 35.37 3.18
297 298 3.574826 AGTTCTTTCTCGCAGAAGTAGGT 59.425 43.478 0.00 0.00 35.37 3.08
298 299 3.851976 TCTTTCTCGCAGAAGTAGGTC 57.148 47.619 0.11 0.00 35.37 3.85
299 300 2.492484 TCTTTCTCGCAGAAGTAGGTCC 59.508 50.000 0.11 0.00 35.37 4.46
300 301 1.919240 TTCTCGCAGAAGTAGGTCCA 58.081 50.000 0.00 0.00 34.09 4.02
301 302 2.145397 TCTCGCAGAAGTAGGTCCAT 57.855 50.000 0.00 0.00 34.09 3.41
302 303 1.751351 TCTCGCAGAAGTAGGTCCATG 59.249 52.381 0.00 0.00 34.09 3.66
303 304 1.751351 CTCGCAGAAGTAGGTCCATGA 59.249 52.381 0.00 0.00 34.09 3.07
304 305 2.363680 CTCGCAGAAGTAGGTCCATGAT 59.636 50.000 0.00 0.00 34.09 2.45
305 306 2.362397 TCGCAGAAGTAGGTCCATGATC 59.638 50.000 0.00 0.00 0.00 2.92
306 307 2.546795 CGCAGAAGTAGGTCCATGATCC 60.547 54.545 0.00 0.00 0.00 3.36
307 308 2.435805 GCAGAAGTAGGTCCATGATCCA 59.564 50.000 0.00 0.00 0.00 3.41
308 309 3.494048 GCAGAAGTAGGTCCATGATCCAG 60.494 52.174 0.00 0.00 0.00 3.86
309 310 3.708631 CAGAAGTAGGTCCATGATCCAGT 59.291 47.826 0.00 0.00 0.00 4.00
310 311 4.895889 CAGAAGTAGGTCCATGATCCAGTA 59.104 45.833 0.00 0.00 0.00 2.74
311 312 4.896482 AGAAGTAGGTCCATGATCCAGTAC 59.104 45.833 0.00 0.00 0.00 2.73
312 313 3.577919 AGTAGGTCCATGATCCAGTACC 58.422 50.000 0.00 0.00 0.00 3.34
313 314 1.807814 AGGTCCATGATCCAGTACCC 58.192 55.000 0.00 0.00 0.00 3.69
314 315 1.009552 AGGTCCATGATCCAGTACCCA 59.990 52.381 0.00 0.00 0.00 4.51
315 316 1.417890 GGTCCATGATCCAGTACCCAG 59.582 57.143 0.00 0.00 0.00 4.45
316 317 2.119495 GTCCATGATCCAGTACCCAGT 58.881 52.381 0.00 0.00 0.00 4.00
317 318 2.103263 GTCCATGATCCAGTACCCAGTC 59.897 54.545 0.00 0.00 0.00 3.51
318 319 1.417890 CCATGATCCAGTACCCAGTCC 59.582 57.143 0.00 0.00 0.00 3.85
319 320 1.069204 CATGATCCAGTACCCAGTCCG 59.931 57.143 0.00 0.00 0.00 4.79
320 321 1.327690 TGATCCAGTACCCAGTCCGC 61.328 60.000 0.00 0.00 0.00 5.54
321 322 1.305802 ATCCAGTACCCAGTCCGCA 60.306 57.895 0.00 0.00 0.00 5.69
322 323 0.691078 ATCCAGTACCCAGTCCGCAT 60.691 55.000 0.00 0.00 0.00 4.73
323 324 1.153369 CCAGTACCCAGTCCGCATG 60.153 63.158 0.00 0.00 0.00 4.06
324 325 1.153369 CAGTACCCAGTCCGCATGG 60.153 63.158 0.00 0.00 37.58 3.66
325 326 1.305802 AGTACCCAGTCCGCATGGA 60.306 57.895 0.00 0.00 43.88 3.41
345 346 4.688413 TGGAACAAGTGAACAACAAAAAGC 59.312 37.500 0.00 0.00 31.92 3.51
346 347 4.688413 GGAACAAGTGAACAACAAAAAGCA 59.312 37.500 0.00 0.00 0.00 3.91
347 348 5.178438 GGAACAAGTGAACAACAAAAAGCAA 59.822 36.000 0.00 0.00 0.00 3.91
348 349 5.844301 ACAAGTGAACAACAAAAAGCAAG 57.156 34.783 0.00 0.00 0.00 4.01
349 350 5.537188 ACAAGTGAACAACAAAAAGCAAGA 58.463 33.333 0.00 0.00 0.00 3.02
350 351 6.165577 ACAAGTGAACAACAAAAAGCAAGAT 58.834 32.000 0.00 0.00 0.00 2.40
351 352 6.091169 ACAAGTGAACAACAAAAAGCAAGATG 59.909 34.615 0.00 0.00 0.00 2.90
352 353 5.111293 AGTGAACAACAAAAAGCAAGATGG 58.889 37.500 0.00 0.00 0.00 3.51
353 354 5.105392 AGTGAACAACAAAAAGCAAGATGGA 60.105 36.000 0.00 0.00 0.00 3.41
354 355 5.580297 GTGAACAACAAAAAGCAAGATGGAA 59.420 36.000 0.00 0.00 0.00 3.53
355 356 5.811613 TGAACAACAAAAAGCAAGATGGAAG 59.188 36.000 0.00 0.00 0.00 3.46
356 357 4.696455 ACAACAAAAAGCAAGATGGAAGG 58.304 39.130 0.00 0.00 0.00 3.46
357 358 4.162131 ACAACAAAAAGCAAGATGGAAGGT 59.838 37.500 0.00 0.00 0.00 3.50
358 359 5.118286 CAACAAAAAGCAAGATGGAAGGTT 58.882 37.500 0.00 0.00 0.00 3.50
359 360 4.696455 ACAAAAAGCAAGATGGAAGGTTG 58.304 39.130 0.00 0.00 0.00 3.77
360 361 4.162131 ACAAAAAGCAAGATGGAAGGTTGT 59.838 37.500 0.00 0.00 0.00 3.32
361 362 4.590850 AAAAGCAAGATGGAAGGTTGTC 57.409 40.909 0.00 0.00 0.00 3.18
362 363 2.206576 AGCAAGATGGAAGGTTGTCC 57.793 50.000 0.00 0.00 38.27 4.02
363 364 1.177401 GCAAGATGGAAGGTTGTCCC 58.823 55.000 0.00 0.00 36.80 4.46
364 365 1.547675 GCAAGATGGAAGGTTGTCCCA 60.548 52.381 0.00 0.00 36.80 4.37
365 366 2.440409 CAAGATGGAAGGTTGTCCCAG 58.560 52.381 0.00 0.00 36.80 4.45
366 367 2.040278 CAAGATGGAAGGTTGTCCCAGA 59.960 50.000 0.00 0.00 36.80 3.86
367 368 1.912043 AGATGGAAGGTTGTCCCAGAG 59.088 52.381 0.00 0.00 36.80 3.35
368 369 1.909302 GATGGAAGGTTGTCCCAGAGA 59.091 52.381 0.00 0.00 36.80 3.10
369 370 1.352083 TGGAAGGTTGTCCCAGAGAG 58.648 55.000 0.00 0.00 36.80 3.20
370 371 0.615850 GGAAGGTTGTCCCAGAGAGG 59.384 60.000 0.00 0.00 34.66 3.69
371 372 0.035915 GAAGGTTGTCCCAGAGAGGC 60.036 60.000 0.00 0.00 35.39 4.70
372 373 1.831652 AAGGTTGTCCCAGAGAGGCG 61.832 60.000 0.00 0.00 35.39 5.52
373 374 2.266055 GTTGTCCCAGAGAGGCGG 59.734 66.667 0.00 0.00 35.39 6.13
374 375 3.706373 TTGTCCCAGAGAGGCGGC 61.706 66.667 0.00 0.00 35.39 6.53
376 377 3.706373 GTCCCAGAGAGGCGGCAA 61.706 66.667 13.08 0.00 35.39 4.52
377 378 2.927856 TCCCAGAGAGGCGGCAAA 60.928 61.111 13.08 0.00 35.39 3.68
378 379 2.747855 CCCAGAGAGGCGGCAAAC 60.748 66.667 13.08 1.88 35.39 2.93
379 380 2.032528 CCAGAGAGGCGGCAAACA 59.967 61.111 13.08 0.00 0.00 2.83
380 381 1.600636 CCAGAGAGGCGGCAAACAA 60.601 57.895 13.08 0.00 0.00 2.83
381 382 1.576421 CAGAGAGGCGGCAAACAAC 59.424 57.895 13.08 1.44 0.00 3.32
382 383 1.148273 AGAGAGGCGGCAAACAACA 59.852 52.632 13.08 0.00 0.00 3.33
383 384 0.465460 AGAGAGGCGGCAAACAACAA 60.465 50.000 13.08 0.00 0.00 2.83
384 385 0.317854 GAGAGGCGGCAAACAACAAC 60.318 55.000 13.08 0.00 0.00 3.32
385 386 1.657181 GAGGCGGCAAACAACAACG 60.657 57.895 13.08 0.00 0.00 4.10
387 388 3.326981 GCGGCAAACAACAACGCC 61.327 61.111 0.00 0.00 44.01 5.68
388 389 2.656973 CGGCAAACAACAACGCCC 60.657 61.111 0.00 0.00 41.71 6.13
389 390 2.279851 GGCAAACAACAACGCCCC 60.280 61.111 0.00 0.00 38.67 5.80
390 391 2.496817 GCAAACAACAACGCCCCA 59.503 55.556 0.00 0.00 0.00 4.96
391 392 1.153549 GCAAACAACAACGCCCCAA 60.154 52.632 0.00 0.00 0.00 4.12
392 393 1.151172 GCAAACAACAACGCCCCAAG 61.151 55.000 0.00 0.00 0.00 3.61
393 394 0.529555 CAAACAACAACGCCCCAAGG 60.530 55.000 0.00 0.00 0.00 3.61
437 438 9.830975 AAAAGAAAATACAAAATACCAGTTGCT 57.169 25.926 0.00 0.00 0.00 3.91
438 439 9.830975 AAAGAAAATACAAAATACCAGTTGCTT 57.169 25.926 0.00 0.00 0.00 3.91
439 440 9.476202 AAGAAAATACAAAATACCAGTTGCTTC 57.524 29.630 0.00 0.00 0.00 3.86
440 441 8.860088 AGAAAATACAAAATACCAGTTGCTTCT 58.140 29.630 0.00 0.00 0.00 2.85
442 443 9.908152 AAAATACAAAATACCAGTTGCTTCTAC 57.092 29.630 0.00 0.00 0.00 2.59
443 444 5.607119 ACAAAATACCAGTTGCTTCTACG 57.393 39.130 0.00 0.00 0.00 3.51
444 445 4.454504 ACAAAATACCAGTTGCTTCTACGG 59.545 41.667 0.00 0.00 0.00 4.02
445 446 2.311124 ATACCAGTTGCTTCTACGGC 57.689 50.000 0.00 0.00 0.00 5.68
446 447 0.108992 TACCAGTTGCTTCTACGGCG 60.109 55.000 4.80 4.80 0.00 6.46
447 448 2.740714 CCAGTTGCTTCTACGGCGC 61.741 63.158 6.90 0.00 0.00 6.53
448 449 2.027073 CAGTTGCTTCTACGGCGCA 61.027 57.895 10.83 0.00 0.00 6.09
449 450 1.738099 AGTTGCTTCTACGGCGCAG 60.738 57.895 10.83 8.25 34.82 5.18
466 467 3.953887 GCAAAGCGCGCCCTATCC 61.954 66.667 30.33 7.96 0.00 2.59
467 468 2.203070 CAAAGCGCGCCCTATCCT 60.203 61.111 30.33 3.60 0.00 3.24
468 469 1.819632 CAAAGCGCGCCCTATCCTT 60.820 57.895 30.33 11.02 0.00 3.36
469 470 1.523938 AAAGCGCGCCCTATCCTTC 60.524 57.895 30.33 0.00 0.00 3.46
470 471 1.972660 AAAGCGCGCCCTATCCTTCT 61.973 55.000 30.33 0.79 0.00 2.85
471 472 1.113517 AAGCGCGCCCTATCCTTCTA 61.114 55.000 30.33 0.00 0.00 2.10
472 473 1.080434 GCGCGCCCTATCCTTCTAG 60.080 63.158 23.24 0.00 0.00 2.43
481 482 4.443598 GCCCTATCCTTCTAGTTGTTGGAG 60.444 50.000 0.00 0.00 0.00 3.86
486 487 5.422214 TCCTTCTAGTTGTTGGAGGAATC 57.578 43.478 0.00 0.00 0.00 2.52
488 489 5.187967 TCCTTCTAGTTGTTGGAGGAATCTC 59.812 44.000 0.00 0.00 39.25 2.75
495 496 1.468914 GTTGGAGGAATCTCAAACGGC 59.531 52.381 0.00 0.00 42.20 5.68
511 512 0.742990 CGGCAATATGTGTGGGACGT 60.743 55.000 0.00 0.00 0.00 4.34
512 513 1.014352 GGCAATATGTGTGGGACGTC 58.986 55.000 7.13 7.13 0.00 4.34
519 520 0.901827 TGTGTGGGACGTCATATGCT 59.098 50.000 18.91 0.00 0.00 3.79
520 521 2.104170 TGTGTGGGACGTCATATGCTA 58.896 47.619 18.91 0.00 0.00 3.49
524 525 4.574828 GTGTGGGACGTCATATGCTAATTT 59.425 41.667 18.91 0.00 0.00 1.82
532 533 6.258160 ACGTCATATGCTAATTTTGACTTGC 58.742 36.000 0.00 0.00 35.64 4.01
533 534 5.393452 CGTCATATGCTAATTTTGACTTGCG 59.607 40.000 0.00 0.00 35.64 4.85
537 538 9.267084 TCATATGCTAATTTTGACTTGCGTATA 57.733 29.630 0.00 0.00 33.19 1.47
538 539 9.533983 CATATGCTAATTTTGACTTGCGTATAG 57.466 33.333 0.00 0.00 33.19 1.31
562 563 8.527567 AGTTGAATTCGAAAAACTTGTTGAAA 57.472 26.923 14.86 0.00 28.57 2.69
566 567 9.364989 TGAATTCGAAAAACTTGTTGAAAATCT 57.635 25.926 0.00 0.00 0.00 2.40
568 569 6.567769 TCGAAAAACTTGTTGAAAATCTGC 57.432 33.333 0.00 0.00 0.00 4.26
768 797 1.719529 TTAGGGAACGGTGTTGGAGA 58.280 50.000 0.00 0.00 0.00 3.71
856 885 1.562008 CCTTTTCCCTCTCTTCCTCCC 59.438 57.143 0.00 0.00 0.00 4.30
889 918 2.575921 ATCAGGAAGGTCATCCCAGA 57.424 50.000 0.00 0.00 40.59 3.86
1030 1067 2.591715 AGAGCACGCACACCAACC 60.592 61.111 0.00 0.00 0.00 3.77
1057 1094 1.826054 CCGAGATGGAGAGAGGCGT 60.826 63.158 0.00 0.00 42.00 5.68
1259 1296 1.471684 GAGAAGGCCGAGTTCGAGTTA 59.528 52.381 2.59 0.00 43.02 2.24
1263 1300 1.411493 GGCCGAGTTCGAGTTAAGCG 61.411 60.000 2.59 0.00 43.02 4.68
1277 1314 1.542492 TAAGCGACGAGGAAGAAGGT 58.458 50.000 0.00 0.00 0.00 3.50
1283 1320 0.318762 ACGAGGAAGAAGGTCACAGC 59.681 55.000 0.00 0.00 0.00 4.40
1290 1327 2.157421 GAAGGTCACAGCAGCTTCG 58.843 57.895 0.00 0.00 40.18 3.79
1338 1375 2.352034 GCTGATGTGAGAGCAAGTGATG 59.648 50.000 0.00 0.00 35.15 3.07
1499 1536 0.795085 CGCTGTCAAAGAAGAGGCAG 59.205 55.000 0.00 0.00 0.00 4.85
1831 1909 7.987458 GGTTGTATCCAAGAGAGTTTCATGATA 59.013 37.037 0.00 0.00 0.00 2.15
1833 1911 8.948631 TGTATCCAAGAGAGTTTCATGATAAC 57.051 34.615 0.00 4.54 0.00 1.89
1834 1912 7.706607 TGTATCCAAGAGAGTTTCATGATAACG 59.293 37.037 0.00 0.00 0.00 3.18
1835 1913 6.037786 TCCAAGAGAGTTTCATGATAACGT 57.962 37.500 0.00 0.00 0.00 3.99
1836 1914 5.869344 TCCAAGAGAGTTTCATGATAACGTG 59.131 40.000 0.00 0.00 0.00 4.49
1837 1915 5.639506 CCAAGAGAGTTTCATGATAACGTGT 59.360 40.000 0.00 0.00 34.90 4.49
1838 1916 6.401474 CCAAGAGAGTTTCATGATAACGTGTG 60.401 42.308 0.00 2.43 34.90 3.82
1839 1917 4.627467 AGAGAGTTTCATGATAACGTGTGC 59.373 41.667 0.00 0.00 34.90 4.57
1857 3895 1.766143 GCGTCATGGCTTCGCTAAGG 61.766 60.000 14.40 0.00 45.29 2.69
1976 4015 2.976903 GGATGCCGGATCAGCAGC 60.977 66.667 5.05 14.79 44.90 5.25
2021 4075 3.933048 GACTCCCAGGTCCCGTCGA 62.933 68.421 0.00 0.00 0.00 4.20
2034 4088 0.997226 CCGTCGATCTTGCCGTATCG 60.997 60.000 0.00 5.57 44.88 2.92
2072 4127 2.513259 GGAGTCCCGGAACCACACA 61.513 63.158 0.73 0.00 0.00 3.72
2084 4139 2.360350 CACACATCGGCAAGGGCT 60.360 61.111 0.00 0.00 40.87 5.19
2105 4160 1.342672 GGGTTTCCTAGATCCCGCCA 61.343 60.000 0.00 0.00 0.00 5.69
2123 4178 0.666374 CACAAGGAAACGTTGGACCC 59.334 55.000 0.00 1.16 0.00 4.46
2142 4197 2.829003 GCCCCCTTAAAGCCTCGC 60.829 66.667 0.00 0.00 0.00 5.03
2177 4232 3.058501 CAGAACCATAAACCACGTGAACC 60.059 47.826 19.30 0.00 0.00 3.62
2178 4233 1.515081 ACCATAAACCACGTGAACCG 58.485 50.000 19.30 1.99 44.03 4.44
2191 4246 2.478031 CGTGAACCGTCAGATCGATCTT 60.478 50.000 25.25 10.00 34.22 2.40
2208 4263 1.905215 TCTTGGAAGCTGAAGGAGGAG 59.095 52.381 0.00 0.00 0.00 3.69
2209 4264 0.987294 TTGGAAGCTGAAGGAGGAGG 59.013 55.000 0.00 0.00 0.00 4.30
2211 4266 1.274069 TGGAAGCTGAAGGAGGAGGAT 60.274 52.381 0.00 0.00 0.00 3.24
2212 4267 1.416030 GGAAGCTGAAGGAGGAGGATC 59.584 57.143 0.00 0.00 0.00 3.36
2213 4268 2.397597 GAAGCTGAAGGAGGAGGATCT 58.602 52.381 0.00 0.00 33.73 2.75
2214 4269 2.566708 AGCTGAAGGAGGAGGATCTT 57.433 50.000 0.00 0.00 33.73 2.40
2215 4270 2.117865 AGCTGAAGGAGGAGGATCTTG 58.882 52.381 0.00 0.00 33.73 3.02
2216 4271 2.114616 GCTGAAGGAGGAGGATCTTGA 58.885 52.381 0.00 0.00 33.73 3.02
2217 4272 2.503356 GCTGAAGGAGGAGGATCTTGAA 59.497 50.000 0.00 0.00 33.73 2.69
2218 4273 3.136260 GCTGAAGGAGGAGGATCTTGAAT 59.864 47.826 0.00 0.00 33.73 2.57
2219 4274 4.706035 CTGAAGGAGGAGGATCTTGAATG 58.294 47.826 0.00 0.00 33.73 2.67
2220 4275 3.457380 TGAAGGAGGAGGATCTTGAATGG 59.543 47.826 0.00 0.00 33.73 3.16
2221 4276 3.142579 AGGAGGAGGATCTTGAATGGT 57.857 47.619 0.00 0.00 33.73 3.55
2222 4277 3.468850 AGGAGGAGGATCTTGAATGGTT 58.531 45.455 0.00 0.00 33.73 3.67
2223 4278 3.457749 AGGAGGAGGATCTTGAATGGTTC 59.542 47.826 0.00 0.00 33.73 3.62
2224 4279 3.462021 GAGGAGGATCTTGAATGGTTCG 58.538 50.000 0.00 0.00 33.73 3.95
2225 4280 2.171448 AGGAGGATCTTGAATGGTTCGG 59.829 50.000 0.00 0.00 33.73 4.30
2226 4281 1.943340 GAGGATCTTGAATGGTTCGGC 59.057 52.381 0.00 0.00 0.00 5.54
2227 4282 1.025041 GGATCTTGAATGGTTCGGCC 58.975 55.000 0.00 0.00 37.90 6.13
2228 4283 0.657840 GATCTTGAATGGTTCGGCCG 59.342 55.000 22.12 22.12 41.21 6.13
2229 4284 0.748005 ATCTTGAATGGTTCGGCCGG 60.748 55.000 27.83 6.80 41.21 6.13
2230 4285 3.051392 CTTGAATGGTTCGGCCGGC 62.051 63.158 27.83 21.18 41.21 6.13
2247 4302 4.715523 CGCCCCGGCCAGAAAAGA 62.716 66.667 2.24 0.00 37.98 2.52
2248 4303 2.043953 GCCCCGGCCAGAAAAGAT 60.044 61.111 2.24 0.00 34.56 2.40
2249 4304 1.682344 GCCCCGGCCAGAAAAGATT 60.682 57.895 2.24 0.00 34.56 2.40
2250 4305 1.667154 GCCCCGGCCAGAAAAGATTC 61.667 60.000 2.24 0.00 33.69 2.52
2251 4306 1.037579 CCCCGGCCAGAAAAGATTCC 61.038 60.000 2.24 0.00 36.12 3.01
2252 4307 1.037579 CCCGGCCAGAAAAGATTCCC 61.038 60.000 2.24 0.00 36.12 3.97
2253 4308 0.034089 CCGGCCAGAAAAGATTCCCT 60.034 55.000 2.24 0.00 36.12 4.20
2254 4309 1.616994 CCGGCCAGAAAAGATTCCCTT 60.617 52.381 2.24 0.00 36.12 3.95
2255 4310 2.171003 CGGCCAGAAAAGATTCCCTTT 58.829 47.619 2.24 0.00 46.47 3.11
2310 4365 0.321564 TCCACTTTGGATGTGAGGCG 60.322 55.000 0.00 0.00 42.67 5.52
2317 4372 1.221840 GGATGTGAGGCGGACATGT 59.778 57.895 0.00 0.00 34.10 3.21
2326 4381 0.027586 GGCGGACATGTTGCGTATTC 59.972 55.000 15.23 1.17 42.01 1.75
2349 4404 2.689691 GGGAGGGCCATGGCAGTAA 61.690 63.158 36.56 0.00 44.11 2.24
2404 4459 3.389329 TGGGATGAGAAAGGTATCTGAGC 59.611 47.826 0.00 0.00 0.00 4.26
2408 4463 4.890158 TGAGAAAGGTATCTGAGCACAA 57.110 40.909 0.00 0.00 0.00 3.33
2423 4478 3.754188 GCACAAGCTGGATAAAGTCAG 57.246 47.619 0.00 0.00 37.91 3.51
2458 4513 1.529226 TCGGATGTGCCAACGAATTT 58.471 45.000 0.00 0.00 35.94 1.82
2478 4533 3.565764 TGAGGACTGAGGCAATAATGG 57.434 47.619 0.00 0.00 0.00 3.16
2481 4536 4.133078 GAGGACTGAGGCAATAATGGAAG 58.867 47.826 0.00 0.00 0.00 3.46
2517 4572 1.660264 GGAACGTTTTTGCAGGCCG 60.660 57.895 0.46 0.00 0.00 6.13
2520 4575 2.429069 CGTTTTTGCAGGCCGAGC 60.429 61.111 15.32 15.32 0.00 5.03
2548 5010 2.746362 AGAACAGAGGGAACTACGTACG 59.254 50.000 15.01 15.01 44.43 3.67
2550 5012 0.247974 CAGAGGGAACTACGTACGCG 60.248 60.000 16.72 3.53 44.43 6.01
2568 5030 1.815421 GTTCAGGTCGCGATGCCAT 60.815 57.895 14.06 0.00 0.00 4.40
2575 5037 0.383491 GTCGCGATGCCATTGAATCG 60.383 55.000 14.06 2.73 46.53 3.34
2623 5085 1.651138 CGCTACACTGAAAGAGAAGCG 59.349 52.381 0.00 0.00 45.74 4.68
2624 5086 1.996191 GCTACACTGAAAGAGAAGCGG 59.004 52.381 0.00 0.00 37.43 5.52
2651 5113 3.444388 AGGTCGAGTTGGAGATTCAGTAC 59.556 47.826 0.00 0.00 0.00 2.73
2671 5133 2.758423 ACGAAAAACTGCCCAACTTCTT 59.242 40.909 0.00 0.00 0.00 2.52
2694 5156 1.321474 TACCTACGGATACCTTGGCG 58.679 55.000 0.00 0.00 0.00 5.69
2713 5175 2.881074 CGACGAGGAGAAATCATGTGT 58.119 47.619 0.00 0.00 0.00 3.72
2715 5177 3.673323 CGACGAGGAGAAATCATGTGTGA 60.673 47.826 0.00 0.00 39.04 3.58
2748 5214 2.730094 GGTGCACCAACAGGCAAG 59.270 61.111 31.23 0.00 42.45 4.01
2753 5219 0.031178 GCACCAACAGGCAAGTTCAG 59.969 55.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.026718 GGATTTGGAGCACTCGGGTG 61.027 60.000 12.23 12.23 45.53 4.61
10 11 1.201429 AGGATTTGGAGCACTCGGGT 61.201 55.000 0.00 0.00 0.00 5.28
11 12 0.462759 GAGGATTTGGAGCACTCGGG 60.463 60.000 0.00 0.00 0.00 5.14
12 13 0.807667 CGAGGATTTGGAGCACTCGG 60.808 60.000 0.00 0.00 45.11 4.63
13 14 2.670635 CGAGGATTTGGAGCACTCG 58.329 57.895 0.00 0.00 43.85 4.18
14 15 1.646189 GACGAGGATTTGGAGCACTC 58.354 55.000 0.00 0.00 0.00 3.51
15 16 0.250513 GGACGAGGATTTGGAGCACT 59.749 55.000 0.00 0.00 0.00 4.40
16 17 0.036388 TGGACGAGGATTTGGAGCAC 60.036 55.000 0.00 0.00 0.00 4.40
17 18 0.911769 ATGGACGAGGATTTGGAGCA 59.088 50.000 0.00 0.00 0.00 4.26
18 19 1.303309 CATGGACGAGGATTTGGAGC 58.697 55.000 0.00 0.00 0.00 4.70
19 20 1.486310 TCCATGGACGAGGATTTGGAG 59.514 52.381 11.44 0.00 0.00 3.86
20 21 1.486310 CTCCATGGACGAGGATTTGGA 59.514 52.381 11.44 0.00 32.53 3.53
21 22 1.210478 ACTCCATGGACGAGGATTTGG 59.790 52.381 11.44 0.00 32.53 3.28
22 23 2.698855 ACTCCATGGACGAGGATTTG 57.301 50.000 11.44 0.00 32.53 2.32
23 24 3.133003 CAGTACTCCATGGACGAGGATTT 59.867 47.826 11.44 0.00 32.53 2.17
24 25 2.695666 CAGTACTCCATGGACGAGGATT 59.304 50.000 11.44 0.00 32.53 3.01
25 26 2.311463 CAGTACTCCATGGACGAGGAT 58.689 52.381 11.44 0.00 32.53 3.24
26 27 1.763968 CAGTACTCCATGGACGAGGA 58.236 55.000 11.44 0.00 0.00 3.71
27 28 0.103208 GCAGTACTCCATGGACGAGG 59.897 60.000 11.44 3.42 0.00 4.63
28 29 1.066303 GAGCAGTACTCCATGGACGAG 59.934 57.143 11.44 3.84 39.75 4.18
29 30 1.103803 GAGCAGTACTCCATGGACGA 58.896 55.000 11.44 0.00 39.75 4.20
30 31 3.650409 GAGCAGTACTCCATGGACG 57.350 57.895 11.44 9.93 39.75 4.79
38 39 7.552459 AGAGGAGAAAATAAAGAGCAGTACTC 58.448 38.462 0.00 0.00 46.66 2.59
39 40 7.364320 GGAGAGGAGAAAATAAAGAGCAGTACT 60.364 40.741 0.00 0.00 0.00 2.73
40 41 6.759356 GGAGAGGAGAAAATAAAGAGCAGTAC 59.241 42.308 0.00 0.00 0.00 2.73
41 42 6.127026 GGGAGAGGAGAAAATAAAGAGCAGTA 60.127 42.308 0.00 0.00 0.00 2.74
42 43 5.338789 GGGAGAGGAGAAAATAAAGAGCAGT 60.339 44.000 0.00 0.00 0.00 4.40
43 44 5.122519 GGGAGAGGAGAAAATAAAGAGCAG 58.877 45.833 0.00 0.00 0.00 4.24
44 45 4.536090 TGGGAGAGGAGAAAATAAAGAGCA 59.464 41.667 0.00 0.00 0.00 4.26
45 46 5.104259 TGGGAGAGGAGAAAATAAAGAGC 57.896 43.478 0.00 0.00 0.00 4.09
46 47 8.586879 ATTTTGGGAGAGGAGAAAATAAAGAG 57.413 34.615 0.00 0.00 0.00 2.85
55 56 9.447279 TGTCTAATATATTTTGGGAGAGGAGAA 57.553 33.333 2.68 0.00 0.00 2.87
56 57 9.447279 TTGTCTAATATATTTTGGGAGAGGAGA 57.553 33.333 2.68 0.00 0.00 3.71
76 77 9.958180 TGATACAATCTTTCCTCAAATTGTCTA 57.042 29.630 3.10 0.00 40.49 2.59
77 78 8.734386 GTGATACAATCTTTCCTCAAATTGTCT 58.266 33.333 3.10 0.00 40.49 3.41
78 79 8.514594 TGTGATACAATCTTTCCTCAAATTGTC 58.485 33.333 3.10 0.00 40.49 3.18
79 80 8.408043 TGTGATACAATCTTTCCTCAAATTGT 57.592 30.769 5.11 5.11 42.99 2.71
80 81 9.512435 GATGTGATACAATCTTTCCTCAAATTG 57.488 33.333 0.00 0.00 35.68 2.32
81 82 8.689972 GGATGTGATACAATCTTTCCTCAAATT 58.310 33.333 0.00 0.00 0.00 1.82
82 83 8.057623 AGGATGTGATACAATCTTTCCTCAAAT 58.942 33.333 0.00 0.00 31.54 2.32
83 84 7.405292 AGGATGTGATACAATCTTTCCTCAAA 58.595 34.615 0.00 0.00 31.54 2.69
84 85 6.962182 AGGATGTGATACAATCTTTCCTCAA 58.038 36.000 0.00 0.00 31.54 3.02
85 86 6.566079 AGGATGTGATACAATCTTTCCTCA 57.434 37.500 0.00 0.00 31.54 3.86
86 87 7.278875 AGAAGGATGTGATACAATCTTTCCTC 58.721 38.462 2.55 0.00 34.10 3.71
87 88 7.205515 AGAAGGATGTGATACAATCTTTCCT 57.794 36.000 4.49 0.00 35.56 3.36
88 89 8.964476 TTAGAAGGATGTGATACAATCTTTCC 57.036 34.615 4.49 0.00 30.21 3.13
113 114 5.329399 TGGTATCTTGGCATGTACCTTTTT 58.671 37.500 21.28 0.00 37.92 1.94
114 115 4.929479 TGGTATCTTGGCATGTACCTTTT 58.071 39.130 21.28 0.40 37.92 2.27
115 116 4.227300 TCTGGTATCTTGGCATGTACCTTT 59.773 41.667 21.28 1.60 37.92 3.11
116 117 3.780294 TCTGGTATCTTGGCATGTACCTT 59.220 43.478 21.28 2.82 37.92 3.50
117 118 3.134804 GTCTGGTATCTTGGCATGTACCT 59.865 47.826 21.28 4.41 37.92 3.08
118 119 3.118408 TGTCTGGTATCTTGGCATGTACC 60.118 47.826 17.42 17.42 37.65 3.34
119 120 4.137116 TGTCTGGTATCTTGGCATGTAC 57.863 45.455 0.00 3.22 0.00 2.90
120 121 4.225042 AGTTGTCTGGTATCTTGGCATGTA 59.775 41.667 0.00 0.00 0.00 2.29
121 122 3.009473 AGTTGTCTGGTATCTTGGCATGT 59.991 43.478 0.00 0.00 0.00 3.21
122 123 3.614092 AGTTGTCTGGTATCTTGGCATG 58.386 45.455 0.00 0.00 0.00 4.06
123 124 5.636903 ATAGTTGTCTGGTATCTTGGCAT 57.363 39.130 0.00 0.00 0.00 4.40
124 125 5.070446 CCTATAGTTGTCTGGTATCTTGGCA 59.930 44.000 0.00 0.00 0.00 4.92
125 126 5.542779 CCTATAGTTGTCTGGTATCTTGGC 58.457 45.833 0.00 0.00 0.00 4.52
126 127 5.070446 TGCCTATAGTTGTCTGGTATCTTGG 59.930 44.000 0.00 0.00 0.00 3.61
127 128 6.040955 TCTGCCTATAGTTGTCTGGTATCTTG 59.959 42.308 0.00 0.00 0.00 3.02
128 129 6.136857 TCTGCCTATAGTTGTCTGGTATCTT 58.863 40.000 0.00 0.00 0.00 2.40
129 130 5.706447 TCTGCCTATAGTTGTCTGGTATCT 58.294 41.667 0.00 0.00 0.00 1.98
130 131 6.406692 TTCTGCCTATAGTTGTCTGGTATC 57.593 41.667 0.00 0.00 0.00 2.24
131 132 5.221541 GCTTCTGCCTATAGTTGTCTGGTAT 60.222 44.000 0.00 0.00 0.00 2.73
132 133 4.099573 GCTTCTGCCTATAGTTGTCTGGTA 59.900 45.833 0.00 0.00 0.00 3.25
133 134 3.118592 GCTTCTGCCTATAGTTGTCTGGT 60.119 47.826 0.00 0.00 0.00 4.00
134 135 3.133721 AGCTTCTGCCTATAGTTGTCTGG 59.866 47.826 0.00 0.00 40.80 3.86
135 136 4.367450 GAGCTTCTGCCTATAGTTGTCTG 58.633 47.826 0.00 0.00 40.80 3.51
136 137 3.386402 GGAGCTTCTGCCTATAGTTGTCT 59.614 47.826 0.00 0.00 40.80 3.41
137 138 3.493524 GGGAGCTTCTGCCTATAGTTGTC 60.494 52.174 0.00 0.00 38.98 3.18
138 139 2.436173 GGGAGCTTCTGCCTATAGTTGT 59.564 50.000 0.00 0.00 38.98 3.32
139 140 3.118905 GGGAGCTTCTGCCTATAGTTG 57.881 52.381 0.00 0.00 38.98 3.16
147 148 3.378399 GACCGAGGGAGCTTCTGCC 62.378 68.421 0.00 0.00 42.52 4.85
148 149 2.185608 GACCGAGGGAGCTTCTGC 59.814 66.667 0.00 0.00 40.05 4.26
149 150 2.726351 GGGACCGAGGGAGCTTCTG 61.726 68.421 0.00 0.00 0.00 3.02
150 151 2.364448 GGGACCGAGGGAGCTTCT 60.364 66.667 0.00 0.00 0.00 2.85
151 152 2.364448 AGGGACCGAGGGAGCTTC 60.364 66.667 0.00 0.00 0.00 3.86
152 153 2.364448 GAGGGACCGAGGGAGCTT 60.364 66.667 0.00 0.00 0.00 3.74
153 154 2.937959 GATGAGGGACCGAGGGAGCT 62.938 65.000 0.00 0.00 0.00 4.09
154 155 2.444895 ATGAGGGACCGAGGGAGC 60.445 66.667 0.00 0.00 0.00 4.70
155 156 0.687757 TTGATGAGGGACCGAGGGAG 60.688 60.000 0.00 0.00 0.00 4.30
156 157 0.687757 CTTGATGAGGGACCGAGGGA 60.688 60.000 0.00 0.00 0.00 4.20
157 158 1.826024 CTTGATGAGGGACCGAGGG 59.174 63.158 0.00 0.00 0.00 4.30
158 159 1.144936 GCTTGATGAGGGACCGAGG 59.855 63.158 0.00 0.00 0.00 4.63
159 160 0.179089 CAGCTTGATGAGGGACCGAG 60.179 60.000 0.00 0.00 0.00 4.63
160 161 0.904865 ACAGCTTGATGAGGGACCGA 60.905 55.000 0.00 0.00 0.00 4.69
161 162 0.460987 GACAGCTTGATGAGGGACCG 60.461 60.000 0.00 0.00 0.00 4.79
162 163 0.107459 GGACAGCTTGATGAGGGACC 60.107 60.000 0.00 0.00 0.00 4.46
163 164 0.908198 AGGACAGCTTGATGAGGGAC 59.092 55.000 0.00 0.00 0.00 4.46
164 165 0.907486 CAGGACAGCTTGATGAGGGA 59.093 55.000 0.00 0.00 0.00 4.20
165 166 0.747283 GCAGGACAGCTTGATGAGGG 60.747 60.000 0.00 0.00 0.00 4.30
166 167 0.747283 GGCAGGACAGCTTGATGAGG 60.747 60.000 0.00 0.00 34.17 3.86
167 168 0.035725 TGGCAGGACAGCTTGATGAG 60.036 55.000 0.00 0.00 34.17 2.90
168 169 0.321919 GTGGCAGGACAGCTTGATGA 60.322 55.000 0.00 0.00 34.17 2.92
169 170 1.642037 CGTGGCAGGACAGCTTGATG 61.642 60.000 0.00 0.00 34.17 3.07
170 171 1.376424 CGTGGCAGGACAGCTTGAT 60.376 57.895 0.00 0.00 34.17 2.57
171 172 2.031012 CGTGGCAGGACAGCTTGA 59.969 61.111 0.00 0.00 34.17 3.02
172 173 3.052082 CCGTGGCAGGACAGCTTG 61.052 66.667 9.09 0.00 34.17 4.01
173 174 2.738213 CTTCCGTGGCAGGACAGCTT 62.738 60.000 9.09 0.00 40.56 3.74
174 175 3.241530 TTCCGTGGCAGGACAGCT 61.242 61.111 9.09 0.00 40.56 4.24
175 176 2.743928 CTTCCGTGGCAGGACAGC 60.744 66.667 9.09 0.00 40.56 4.40
176 177 2.046892 CCTTCCGTGGCAGGACAG 60.047 66.667 9.09 3.85 40.56 3.51
177 178 3.636231 CCCTTCCGTGGCAGGACA 61.636 66.667 9.09 0.00 40.56 4.02
178 179 4.410400 CCCCTTCCGTGGCAGGAC 62.410 72.222 9.09 0.00 40.56 3.85
184 185 3.636231 TCAGTGCCCCTTCCGTGG 61.636 66.667 0.00 0.00 0.00 4.94
185 186 2.358737 GTCAGTGCCCCTTCCGTG 60.359 66.667 0.00 0.00 0.00 4.94
186 187 3.637273 GGTCAGTGCCCCTTCCGT 61.637 66.667 0.00 0.00 0.00 4.69
187 188 3.612247 CTGGTCAGTGCCCCTTCCG 62.612 68.421 0.00 0.00 0.00 4.30
188 189 2.352805 CTGGTCAGTGCCCCTTCC 59.647 66.667 0.00 0.00 0.00 3.46
189 190 2.360475 GCTGGTCAGTGCCCCTTC 60.360 66.667 0.00 0.00 0.00 3.46
190 191 2.417558 GAAGCTGGTCAGTGCCCCTT 62.418 60.000 0.00 0.00 0.00 3.95
191 192 2.856000 AAGCTGGTCAGTGCCCCT 60.856 61.111 0.00 0.00 0.00 4.79
192 193 2.360475 GAAGCTGGTCAGTGCCCC 60.360 66.667 0.00 0.00 0.00 5.80
193 194 1.376553 GAGAAGCTGGTCAGTGCCC 60.377 63.158 0.00 0.00 0.00 5.36
194 195 1.376553 GGAGAAGCTGGTCAGTGCC 60.377 63.158 0.00 0.00 0.00 5.01
195 196 0.952984 GTGGAGAAGCTGGTCAGTGC 60.953 60.000 0.00 0.00 0.00 4.40
196 197 0.321122 GGTGGAGAAGCTGGTCAGTG 60.321 60.000 0.00 0.00 0.00 3.66
197 198 0.764369 TGGTGGAGAAGCTGGTCAGT 60.764 55.000 0.00 0.00 0.00 3.41
198 199 0.321122 GTGGTGGAGAAGCTGGTCAG 60.321 60.000 0.00 0.00 0.00 3.51
199 200 1.053835 TGTGGTGGAGAAGCTGGTCA 61.054 55.000 0.00 0.00 0.00 4.02
200 201 0.603975 GTGTGGTGGAGAAGCTGGTC 60.604 60.000 0.00 0.00 0.00 4.02
201 202 1.451936 GTGTGGTGGAGAAGCTGGT 59.548 57.895 0.00 0.00 0.00 4.00
202 203 1.669115 CGTGTGGTGGAGAAGCTGG 60.669 63.158 0.00 0.00 0.00 4.85
203 204 2.320587 GCGTGTGGTGGAGAAGCTG 61.321 63.158 0.00 0.00 0.00 4.24
204 205 1.185618 TAGCGTGTGGTGGAGAAGCT 61.186 55.000 0.00 0.00 36.60 3.74
205 206 0.320421 TTAGCGTGTGGTGGAGAAGC 60.320 55.000 0.00 0.00 0.00 3.86
206 207 1.714794 CTTAGCGTGTGGTGGAGAAG 58.285 55.000 0.00 0.00 0.00 2.85
207 208 0.320421 GCTTAGCGTGTGGTGGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
208 209 1.292223 GCTTAGCGTGTGGTGGAGA 59.708 57.895 0.00 0.00 0.00 3.71
209 210 0.602638 TTGCTTAGCGTGTGGTGGAG 60.603 55.000 0.00 0.00 0.00 3.86
210 211 0.179043 TTTGCTTAGCGTGTGGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
211 212 0.665835 TTTTGCTTAGCGTGTGGTGG 59.334 50.000 0.00 0.00 0.00 4.61
212 213 2.704725 ATTTTGCTTAGCGTGTGGTG 57.295 45.000 0.00 0.00 0.00 4.17
213 214 2.884639 AGAATTTTGCTTAGCGTGTGGT 59.115 40.909 0.00 0.00 0.00 4.16
214 215 3.559238 AGAATTTTGCTTAGCGTGTGG 57.441 42.857 0.00 0.00 0.00 4.17
215 216 4.496895 GCATAGAATTTTGCTTAGCGTGTG 59.503 41.667 0.00 0.00 35.95 3.82
216 217 4.155826 TGCATAGAATTTTGCTTAGCGTGT 59.844 37.500 0.00 0.00 39.60 4.49
217 218 4.661125 TGCATAGAATTTTGCTTAGCGTG 58.339 39.130 0.00 0.00 39.60 5.34
218 219 4.963276 TGCATAGAATTTTGCTTAGCGT 57.037 36.364 0.00 0.00 39.60 5.07
219 220 6.087291 GCTAATGCATAGAATTTTGCTTAGCG 59.913 38.462 20.63 0.00 40.84 4.26
220 221 6.087291 CGCTAATGCATAGAATTTTGCTTAGC 59.913 38.462 22.49 22.49 43.13 3.09
221 222 6.580041 CCGCTAATGCATAGAATTTTGCTTAG 59.420 38.462 0.00 12.69 39.60 2.18
222 223 6.437928 CCGCTAATGCATAGAATTTTGCTTA 58.562 36.000 0.00 5.99 39.60 3.09
223 224 5.284079 CCGCTAATGCATAGAATTTTGCTT 58.716 37.500 0.00 2.44 39.60 3.91
224 225 4.794003 GCCGCTAATGCATAGAATTTTGCT 60.794 41.667 0.00 0.00 39.60 3.91
225 226 3.426525 GCCGCTAATGCATAGAATTTTGC 59.573 43.478 0.00 0.00 39.64 3.68
226 227 3.983344 GGCCGCTAATGCATAGAATTTTG 59.017 43.478 0.00 0.00 39.64 2.44
227 228 3.636300 TGGCCGCTAATGCATAGAATTTT 59.364 39.130 0.00 0.00 39.64 1.82
228 229 3.221771 TGGCCGCTAATGCATAGAATTT 58.778 40.909 0.00 0.00 39.64 1.82
229 230 2.816087 CTGGCCGCTAATGCATAGAATT 59.184 45.455 0.00 0.00 39.64 2.17
230 231 2.038952 TCTGGCCGCTAATGCATAGAAT 59.961 45.455 0.00 0.00 39.64 2.40
231 232 1.416030 TCTGGCCGCTAATGCATAGAA 59.584 47.619 0.00 0.00 39.64 2.10
232 233 1.001293 CTCTGGCCGCTAATGCATAGA 59.999 52.381 0.00 0.00 39.64 1.98
233 234 1.270518 ACTCTGGCCGCTAATGCATAG 60.271 52.381 0.00 0.00 39.64 2.23
234 235 0.758734 ACTCTGGCCGCTAATGCATA 59.241 50.000 0.00 0.00 39.64 3.14
235 236 0.758734 TACTCTGGCCGCTAATGCAT 59.241 50.000 0.00 0.00 39.64 3.96
236 237 0.758734 ATACTCTGGCCGCTAATGCA 59.241 50.000 0.00 0.00 39.64 3.96
237 238 1.884235 AATACTCTGGCCGCTAATGC 58.116 50.000 0.00 0.00 0.00 3.56
238 239 3.990092 TGTAATACTCTGGCCGCTAATG 58.010 45.455 0.00 0.00 0.00 1.90
239 240 4.891992 ATGTAATACTCTGGCCGCTAAT 57.108 40.909 0.00 0.00 0.00 1.73
240 241 5.479027 TGATATGTAATACTCTGGCCGCTAA 59.521 40.000 0.00 0.00 0.00 3.09
241 242 5.014202 TGATATGTAATACTCTGGCCGCTA 58.986 41.667 0.00 0.00 0.00 4.26
242 243 3.832490 TGATATGTAATACTCTGGCCGCT 59.168 43.478 0.00 0.00 0.00 5.52
243 244 4.188247 TGATATGTAATACTCTGGCCGC 57.812 45.455 0.00 0.00 0.00 6.53
244 245 8.197439 TCAATATGATATGTAATACTCTGGCCG 58.803 37.037 0.00 0.00 0.00 6.13
245 246 9.319143 GTCAATATGATATGTAATACTCTGGCC 57.681 37.037 0.00 0.00 0.00 5.36
246 247 9.319143 GGTCAATATGATATGTAATACTCTGGC 57.681 37.037 0.00 0.00 0.00 4.85
260 261 9.967346 CGAGAAAGAACTTAGGTCAATATGATA 57.033 33.333 0.00 0.00 0.00 2.15
261 262 7.439655 GCGAGAAAGAACTTAGGTCAATATGAT 59.560 37.037 0.00 0.00 0.00 2.45
262 263 6.757010 GCGAGAAAGAACTTAGGTCAATATGA 59.243 38.462 0.00 0.00 0.00 2.15
263 264 6.535150 TGCGAGAAAGAACTTAGGTCAATATG 59.465 38.462 0.00 0.00 0.00 1.78
264 265 6.640518 TGCGAGAAAGAACTTAGGTCAATAT 58.359 36.000 0.00 0.00 0.00 1.28
265 266 6.032956 TGCGAGAAAGAACTTAGGTCAATA 57.967 37.500 0.00 0.00 0.00 1.90
266 267 4.894784 TGCGAGAAAGAACTTAGGTCAAT 58.105 39.130 0.00 0.00 0.00 2.57
267 268 4.038763 TCTGCGAGAAAGAACTTAGGTCAA 59.961 41.667 0.00 0.00 0.00 3.18
268 269 3.572682 TCTGCGAGAAAGAACTTAGGTCA 59.427 43.478 0.00 0.00 0.00 4.02
269 270 4.175787 TCTGCGAGAAAGAACTTAGGTC 57.824 45.455 0.00 0.00 0.00 3.85
270 271 4.039366 ACTTCTGCGAGAAAGAACTTAGGT 59.961 41.667 0.00 0.00 33.19 3.08
271 272 4.561105 ACTTCTGCGAGAAAGAACTTAGG 58.439 43.478 0.00 0.00 33.19 2.69
272 273 5.802956 CCTACTTCTGCGAGAAAGAACTTAG 59.197 44.000 0.00 0.00 33.19 2.18
273 274 5.243283 ACCTACTTCTGCGAGAAAGAACTTA 59.757 40.000 0.00 0.00 33.19 2.24
274 275 4.039366 ACCTACTTCTGCGAGAAAGAACTT 59.961 41.667 0.00 0.00 33.19 2.66
275 276 3.574826 ACCTACTTCTGCGAGAAAGAACT 59.425 43.478 0.00 0.00 33.19 3.01
276 277 3.915536 ACCTACTTCTGCGAGAAAGAAC 58.084 45.455 0.00 0.00 33.19 3.01
277 278 3.056749 GGACCTACTTCTGCGAGAAAGAA 60.057 47.826 0.00 0.00 33.19 2.52
278 279 2.492484 GGACCTACTTCTGCGAGAAAGA 59.508 50.000 0.00 0.00 33.19 2.52
279 280 2.231478 TGGACCTACTTCTGCGAGAAAG 59.769 50.000 0.00 0.00 33.19 2.62
280 281 2.244695 TGGACCTACTTCTGCGAGAAA 58.755 47.619 0.00 0.00 33.19 2.52
281 282 1.919240 TGGACCTACTTCTGCGAGAA 58.081 50.000 0.00 0.00 32.50 2.87
282 283 1.751351 CATGGACCTACTTCTGCGAGA 59.249 52.381 0.00 0.00 0.00 4.04
283 284 1.751351 TCATGGACCTACTTCTGCGAG 59.249 52.381 0.00 0.00 0.00 5.03
284 285 1.847328 TCATGGACCTACTTCTGCGA 58.153 50.000 0.00 0.00 0.00 5.10
285 286 2.546795 GGATCATGGACCTACTTCTGCG 60.547 54.545 0.00 0.00 0.00 5.18
286 287 2.435805 TGGATCATGGACCTACTTCTGC 59.564 50.000 9.68 0.00 0.00 4.26
287 288 3.708631 ACTGGATCATGGACCTACTTCTG 59.291 47.826 9.68 0.00 0.00 3.02
288 289 4.000928 ACTGGATCATGGACCTACTTCT 57.999 45.455 9.68 0.00 0.00 2.85
289 290 4.039366 GGTACTGGATCATGGACCTACTTC 59.961 50.000 10.37 0.00 0.00 3.01
290 291 3.967987 GGTACTGGATCATGGACCTACTT 59.032 47.826 10.37 0.00 0.00 2.24
291 292 3.577919 GGTACTGGATCATGGACCTACT 58.422 50.000 10.37 0.00 0.00 2.57
292 293 2.633481 GGGTACTGGATCATGGACCTAC 59.367 54.545 15.45 0.54 0.00 3.18
293 294 2.248950 TGGGTACTGGATCATGGACCTA 59.751 50.000 15.45 8.95 0.00 3.08
294 295 1.009552 TGGGTACTGGATCATGGACCT 59.990 52.381 15.45 0.00 0.00 3.85
295 296 1.417890 CTGGGTACTGGATCATGGACC 59.582 57.143 9.41 9.41 0.00 4.46
296 297 2.103263 GACTGGGTACTGGATCATGGAC 59.897 54.545 0.00 0.00 0.00 4.02
297 298 2.398588 GACTGGGTACTGGATCATGGA 58.601 52.381 0.00 0.00 0.00 3.41
298 299 1.417890 GGACTGGGTACTGGATCATGG 59.582 57.143 0.00 0.00 0.00 3.66
299 300 1.069204 CGGACTGGGTACTGGATCATG 59.931 57.143 0.00 0.00 0.00 3.07
300 301 1.414158 CGGACTGGGTACTGGATCAT 58.586 55.000 0.00 0.00 0.00 2.45
301 302 1.327690 GCGGACTGGGTACTGGATCA 61.328 60.000 0.00 0.00 0.00 2.92
302 303 1.327690 TGCGGACTGGGTACTGGATC 61.328 60.000 0.00 0.00 0.00 3.36
303 304 0.691078 ATGCGGACTGGGTACTGGAT 60.691 55.000 0.00 0.00 0.00 3.41
304 305 1.305802 ATGCGGACTGGGTACTGGA 60.306 57.895 0.00 0.00 0.00 3.86
305 306 1.153369 CATGCGGACTGGGTACTGG 60.153 63.158 0.00 0.00 0.00 4.00
306 307 1.153369 CCATGCGGACTGGGTACTG 60.153 63.158 0.00 0.00 0.00 2.74
307 308 0.907704 TTCCATGCGGACTGGGTACT 60.908 55.000 5.76 0.00 42.67 2.73
308 309 0.743345 GTTCCATGCGGACTGGGTAC 60.743 60.000 5.76 0.00 42.67 3.34
309 310 1.195442 TGTTCCATGCGGACTGGGTA 61.195 55.000 5.76 0.00 42.67 3.69
310 311 2.063015 TTGTTCCATGCGGACTGGGT 62.063 55.000 5.76 0.00 42.67 4.51
311 312 1.303236 TTGTTCCATGCGGACTGGG 60.303 57.895 5.76 0.00 42.67 4.45
312 313 0.606401 ACTTGTTCCATGCGGACTGG 60.606 55.000 0.00 0.08 42.67 4.00
313 314 0.518636 CACTTGTTCCATGCGGACTG 59.481 55.000 0.00 0.00 42.67 3.51
314 315 0.396435 TCACTTGTTCCATGCGGACT 59.604 50.000 0.00 0.00 42.67 3.85
315 316 1.069227 GTTCACTTGTTCCATGCGGAC 60.069 52.381 0.00 0.00 42.67 4.79
316 317 1.234821 GTTCACTTGTTCCATGCGGA 58.765 50.000 0.00 0.00 40.60 5.54
317 318 0.950836 TGTTCACTTGTTCCATGCGG 59.049 50.000 0.00 0.00 0.00 5.69
318 319 2.223456 TGTTGTTCACTTGTTCCATGCG 60.223 45.455 0.00 0.00 0.00 4.73
319 320 3.435105 TGTTGTTCACTTGTTCCATGC 57.565 42.857 0.00 0.00 0.00 4.06
320 321 6.672836 GCTTTTTGTTGTTCACTTGTTCCATG 60.673 38.462 0.00 0.00 0.00 3.66
321 322 5.351189 GCTTTTTGTTGTTCACTTGTTCCAT 59.649 36.000 0.00 0.00 0.00 3.41
322 323 4.688413 GCTTTTTGTTGTTCACTTGTTCCA 59.312 37.500 0.00 0.00 0.00 3.53
323 324 4.688413 TGCTTTTTGTTGTTCACTTGTTCC 59.312 37.500 0.00 0.00 0.00 3.62
324 325 5.837586 TGCTTTTTGTTGTTCACTTGTTC 57.162 34.783 0.00 0.00 0.00 3.18
325 326 5.988561 TCTTGCTTTTTGTTGTTCACTTGTT 59.011 32.000 0.00 0.00 0.00 2.83
326 327 5.537188 TCTTGCTTTTTGTTGTTCACTTGT 58.463 33.333 0.00 0.00 0.00 3.16
327 328 6.455913 CCATCTTGCTTTTTGTTGTTCACTTG 60.456 38.462 0.00 0.00 0.00 3.16
328 329 5.581874 CCATCTTGCTTTTTGTTGTTCACTT 59.418 36.000 0.00 0.00 0.00 3.16
329 330 5.105392 TCCATCTTGCTTTTTGTTGTTCACT 60.105 36.000 0.00 0.00 0.00 3.41
330 331 5.108517 TCCATCTTGCTTTTTGTTGTTCAC 58.891 37.500 0.00 0.00 0.00 3.18
331 332 5.336150 TCCATCTTGCTTTTTGTTGTTCA 57.664 34.783 0.00 0.00 0.00 3.18
332 333 5.234972 CCTTCCATCTTGCTTTTTGTTGTTC 59.765 40.000 0.00 0.00 0.00 3.18
333 334 5.118286 CCTTCCATCTTGCTTTTTGTTGTT 58.882 37.500 0.00 0.00 0.00 2.83
334 335 4.162131 ACCTTCCATCTTGCTTTTTGTTGT 59.838 37.500 0.00 0.00 0.00 3.32
335 336 4.696455 ACCTTCCATCTTGCTTTTTGTTG 58.304 39.130 0.00 0.00 0.00 3.33
336 337 5.118286 CAACCTTCCATCTTGCTTTTTGTT 58.882 37.500 0.00 0.00 0.00 2.83
337 338 4.162131 ACAACCTTCCATCTTGCTTTTTGT 59.838 37.500 0.00 0.00 0.00 2.83
338 339 4.696455 ACAACCTTCCATCTTGCTTTTTG 58.304 39.130 0.00 0.00 0.00 2.44
339 340 4.202253 GGACAACCTTCCATCTTGCTTTTT 60.202 41.667 0.00 0.00 35.49 1.94
340 341 3.321968 GGACAACCTTCCATCTTGCTTTT 59.678 43.478 0.00 0.00 35.49 2.27
341 342 2.893489 GGACAACCTTCCATCTTGCTTT 59.107 45.455 0.00 0.00 35.49 3.51
342 343 2.519013 GGACAACCTTCCATCTTGCTT 58.481 47.619 0.00 0.00 35.49 3.91
343 344 1.272147 GGGACAACCTTCCATCTTGCT 60.272 52.381 0.00 0.00 37.40 3.91
344 345 1.177401 GGGACAACCTTCCATCTTGC 58.823 55.000 0.00 0.00 37.40 4.01
345 346 2.040278 TCTGGGACAACCTTCCATCTTG 59.960 50.000 0.00 0.00 38.70 3.02
346 347 2.307098 CTCTGGGACAACCTTCCATCTT 59.693 50.000 0.00 0.00 38.70 2.40
347 348 1.912043 CTCTGGGACAACCTTCCATCT 59.088 52.381 0.00 0.00 38.70 2.90
348 349 1.909302 TCTCTGGGACAACCTTCCATC 59.091 52.381 0.00 0.00 38.70 3.51
349 350 1.912043 CTCTCTGGGACAACCTTCCAT 59.088 52.381 0.00 0.00 38.70 3.41
350 351 1.352083 CTCTCTGGGACAACCTTCCA 58.648 55.000 0.00 0.00 38.70 3.53
351 352 0.615850 CCTCTCTGGGACAACCTTCC 59.384 60.000 0.00 0.00 38.70 3.46
352 353 0.035915 GCCTCTCTGGGACAACCTTC 60.036 60.000 0.00 0.00 38.70 3.46
353 354 1.831652 CGCCTCTCTGGGACAACCTT 61.832 60.000 0.00 0.00 38.70 3.50
354 355 2.286523 CGCCTCTCTGGGACAACCT 61.287 63.158 0.00 0.00 38.70 3.50
355 356 2.266055 CGCCTCTCTGGGACAACC 59.734 66.667 0.00 0.00 38.70 3.77
356 357 2.266055 CCGCCTCTCTGGGACAAC 59.734 66.667 0.00 0.00 38.70 3.32
357 358 3.706373 GCCGCCTCTCTGGGACAA 61.706 66.667 0.00 0.00 38.70 3.18
359 360 3.254024 TTTGCCGCCTCTCTGGGAC 62.254 63.158 0.00 0.00 36.00 4.46
360 361 2.927856 TTTGCCGCCTCTCTGGGA 60.928 61.111 0.00 0.00 36.00 4.37
361 362 2.747855 GTTTGCCGCCTCTCTGGG 60.748 66.667 0.00 0.00 36.00 4.45
362 363 1.600636 TTGTTTGCCGCCTCTCTGG 60.601 57.895 0.00 0.00 39.35 3.86
363 364 1.165907 TGTTGTTTGCCGCCTCTCTG 61.166 55.000 0.00 0.00 0.00 3.35
364 365 0.465460 TTGTTGTTTGCCGCCTCTCT 60.465 50.000 0.00 0.00 0.00 3.10
365 366 0.317854 GTTGTTGTTTGCCGCCTCTC 60.318 55.000 0.00 0.00 0.00 3.20
366 367 1.733526 GTTGTTGTTTGCCGCCTCT 59.266 52.632 0.00 0.00 0.00 3.69
367 368 1.657181 CGTTGTTGTTTGCCGCCTC 60.657 57.895 0.00 0.00 0.00 4.70
368 369 2.411290 CGTTGTTGTTTGCCGCCT 59.589 55.556 0.00 0.00 0.00 5.52
369 370 3.326981 GCGTTGTTGTTTGCCGCC 61.327 61.111 0.00 0.00 38.52 6.13
370 371 3.326981 GGCGTTGTTGTTTGCCGC 61.327 61.111 0.00 0.00 43.35 6.53
372 373 2.279851 GGGGCGTTGTTGTTTGCC 60.280 61.111 0.00 0.00 46.82 4.52
373 374 1.151172 CTTGGGGCGTTGTTGTTTGC 61.151 55.000 0.00 0.00 0.00 3.68
374 375 0.529555 CCTTGGGGCGTTGTTGTTTG 60.530 55.000 0.00 0.00 0.00 2.93
375 376 1.681486 CCCTTGGGGCGTTGTTGTTT 61.681 55.000 0.00 0.00 35.35 2.83
376 377 2.131067 CCCTTGGGGCGTTGTTGTT 61.131 57.895 0.00 0.00 35.35 2.83
377 378 2.520741 CCCTTGGGGCGTTGTTGT 60.521 61.111 0.00 0.00 35.35 3.32
378 379 1.395826 TTTCCCTTGGGGCGTTGTTG 61.396 55.000 5.78 0.00 43.94 3.33
379 380 0.471022 ATTTCCCTTGGGGCGTTGTT 60.471 50.000 5.78 0.00 43.94 2.83
380 381 0.406361 TATTTCCCTTGGGGCGTTGT 59.594 50.000 5.78 0.00 43.94 3.32
381 382 1.551452 TTATTTCCCTTGGGGCGTTG 58.449 50.000 5.78 0.00 43.94 4.10
382 383 2.312424 TTTATTTCCCTTGGGGCGTT 57.688 45.000 5.78 0.00 43.94 4.84
383 384 2.176045 CTTTTATTTCCCTTGGGGCGT 58.824 47.619 5.78 0.00 43.94 5.68
384 385 2.176045 ACTTTTATTTCCCTTGGGGCG 58.824 47.619 5.78 0.00 43.94 6.13
385 386 4.090819 TGTACTTTTATTTCCCTTGGGGC 58.909 43.478 5.78 0.00 43.94 5.80
386 387 6.867519 AATGTACTTTTATTTCCCTTGGGG 57.132 37.500 5.78 0.00 46.11 4.96
411 412 9.830975 AGCAACTGGTATTTTGTATTTTCTTTT 57.169 25.926 0.00 0.00 0.00 2.27
412 413 9.830975 AAGCAACTGGTATTTTGTATTTTCTTT 57.169 25.926 0.00 0.00 0.00 2.52
413 414 9.476202 GAAGCAACTGGTATTTTGTATTTTCTT 57.524 29.630 0.00 0.00 0.00 2.52
414 415 8.860088 AGAAGCAACTGGTATTTTGTATTTTCT 58.140 29.630 0.00 0.00 0.00 2.52
416 417 9.908152 GTAGAAGCAACTGGTATTTTGTATTTT 57.092 29.630 0.00 0.00 0.00 1.82
417 418 8.234546 CGTAGAAGCAACTGGTATTTTGTATTT 58.765 33.333 0.00 0.00 0.00 1.40
418 419 7.148306 CCGTAGAAGCAACTGGTATTTTGTATT 60.148 37.037 0.00 0.00 0.00 1.89
419 420 6.315393 CCGTAGAAGCAACTGGTATTTTGTAT 59.685 38.462 0.00 0.00 0.00 2.29
420 421 5.640357 CCGTAGAAGCAACTGGTATTTTGTA 59.360 40.000 0.00 0.00 0.00 2.41
421 422 4.454504 CCGTAGAAGCAACTGGTATTTTGT 59.545 41.667 0.00 0.00 0.00 2.83
422 423 4.671766 GCCGTAGAAGCAACTGGTATTTTG 60.672 45.833 0.00 0.00 0.00 2.44
423 424 3.439129 GCCGTAGAAGCAACTGGTATTTT 59.561 43.478 0.00 0.00 0.00 1.82
424 425 3.007635 GCCGTAGAAGCAACTGGTATTT 58.992 45.455 0.00 0.00 0.00 1.40
425 426 2.629051 GCCGTAGAAGCAACTGGTATT 58.371 47.619 0.00 0.00 0.00 1.89
426 427 1.470979 CGCCGTAGAAGCAACTGGTAT 60.471 52.381 0.00 0.00 0.00 2.73
427 428 0.108992 CGCCGTAGAAGCAACTGGTA 60.109 55.000 0.00 0.00 0.00 3.25
428 429 1.374252 CGCCGTAGAAGCAACTGGT 60.374 57.895 0.00 0.00 0.00 4.00
429 430 2.740714 GCGCCGTAGAAGCAACTGG 61.741 63.158 0.00 0.00 0.00 4.00
430 431 1.959899 CTGCGCCGTAGAAGCAACTG 61.960 60.000 4.18 0.00 38.91 3.16
431 432 1.738099 CTGCGCCGTAGAAGCAACT 60.738 57.895 4.18 0.00 38.91 3.16
432 433 2.778679 CTGCGCCGTAGAAGCAAC 59.221 61.111 4.18 0.00 38.91 4.17
433 434 3.118454 GCTGCGCCGTAGAAGCAA 61.118 61.111 6.33 0.00 38.91 3.91
434 435 3.874807 TTGCTGCGCCGTAGAAGCA 62.875 57.895 13.18 13.18 43.60 3.91
435 436 2.568935 CTTTGCTGCGCCGTAGAAGC 62.569 60.000 6.33 6.57 36.18 3.86
436 437 1.421485 CTTTGCTGCGCCGTAGAAG 59.579 57.895 6.33 0.00 0.00 2.85
437 438 2.677003 GCTTTGCTGCGCCGTAGAA 61.677 57.895 6.33 0.00 0.00 2.10
438 439 3.118454 GCTTTGCTGCGCCGTAGA 61.118 61.111 6.33 0.00 0.00 2.59
447 448 3.173390 GATAGGGCGCGCTTTGCTG 62.173 63.158 32.72 0.00 43.27 4.41
448 449 2.897350 GATAGGGCGCGCTTTGCT 60.897 61.111 32.72 14.60 43.27 3.91
449 450 3.953887 GGATAGGGCGCGCTTTGC 61.954 66.667 32.72 24.99 41.47 3.68
450 451 1.776034 GAAGGATAGGGCGCGCTTTG 61.776 60.000 32.72 0.00 0.00 2.77
451 452 1.523938 GAAGGATAGGGCGCGCTTT 60.524 57.895 32.72 24.63 0.00 3.51
452 453 1.113517 TAGAAGGATAGGGCGCGCTT 61.114 55.000 32.72 21.51 0.00 4.68
453 454 1.528292 CTAGAAGGATAGGGCGCGCT 61.528 60.000 32.29 30.50 0.00 5.92
454 455 1.080434 CTAGAAGGATAGGGCGCGC 60.080 63.158 25.94 25.94 0.00 6.86
455 456 0.674534 AACTAGAAGGATAGGGCGCG 59.325 55.000 0.00 0.00 0.00 6.86
456 457 1.413077 ACAACTAGAAGGATAGGGCGC 59.587 52.381 0.00 0.00 0.00 6.53
457 458 3.458189 CAACAACTAGAAGGATAGGGCG 58.542 50.000 0.00 0.00 0.00 6.13
458 459 3.454812 TCCAACAACTAGAAGGATAGGGC 59.545 47.826 0.00 0.00 0.00 5.19
459 460 4.101741 CCTCCAACAACTAGAAGGATAGGG 59.898 50.000 0.00 0.00 0.00 3.53
460 461 4.962995 TCCTCCAACAACTAGAAGGATAGG 59.037 45.833 0.00 0.00 0.00 2.57
461 462 6.546428 TTCCTCCAACAACTAGAAGGATAG 57.454 41.667 0.00 0.00 0.00 2.08
462 463 6.903534 AGATTCCTCCAACAACTAGAAGGATA 59.096 38.462 0.00 0.00 0.00 2.59
463 464 5.728741 AGATTCCTCCAACAACTAGAAGGAT 59.271 40.000 0.00 0.00 0.00 3.24
464 465 5.094387 AGATTCCTCCAACAACTAGAAGGA 58.906 41.667 0.00 0.00 0.00 3.36
465 466 5.046304 TGAGATTCCTCCAACAACTAGAAGG 60.046 44.000 0.00 0.00 38.66 3.46
466 467 6.042638 TGAGATTCCTCCAACAACTAGAAG 57.957 41.667 0.00 0.00 38.66 2.85
467 468 6.433847 TTGAGATTCCTCCAACAACTAGAA 57.566 37.500 0.00 0.00 38.66 2.10
468 469 6.231211 GTTTGAGATTCCTCCAACAACTAGA 58.769 40.000 0.00 0.00 41.85 2.43
469 470 5.120830 CGTTTGAGATTCCTCCAACAACTAG 59.879 44.000 9.16 0.00 42.16 2.57
470 471 4.994852 CGTTTGAGATTCCTCCAACAACTA 59.005 41.667 9.16 0.00 42.16 2.24
471 472 3.815401 CGTTTGAGATTCCTCCAACAACT 59.185 43.478 9.16 0.00 42.16 3.16
472 473 3.058224 CCGTTTGAGATTCCTCCAACAAC 60.058 47.826 9.16 0.00 42.16 3.32
481 482 4.096382 ACACATATTGCCGTTTGAGATTCC 59.904 41.667 0.00 0.00 0.00 3.01
486 487 2.159393 CCCACACATATTGCCGTTTGAG 60.159 50.000 0.00 0.00 0.00 3.02
488 489 1.815613 TCCCACACATATTGCCGTTTG 59.184 47.619 0.00 0.00 0.00 2.93
492 493 0.742990 ACGTCCCACACATATTGCCG 60.743 55.000 0.00 0.00 0.00 5.69
493 494 1.014352 GACGTCCCACACATATTGCC 58.986 55.000 3.51 0.00 0.00 4.52
494 495 1.732941 TGACGTCCCACACATATTGC 58.267 50.000 14.12 0.00 0.00 3.56
495 496 4.083855 GCATATGACGTCCCACACATATTG 60.084 45.833 14.12 5.68 34.90 1.90
532 533 8.928844 ACAAGTTTTTCGAATTCAACTATACG 57.071 30.769 14.77 8.94 0.00 3.06
537 538 8.527567 TTTCAACAAGTTTTTCGAATTCAACT 57.472 26.923 6.22 5.42 0.00 3.16
538 539 9.753669 ATTTTCAACAAGTTTTTCGAATTCAAC 57.246 25.926 6.22 3.02 0.00 3.18
559 560 7.715265 TTACATCCGAGATAAGCAGATTTTC 57.285 36.000 0.00 0.00 0.00 2.29
562 563 7.179338 AGGTATTACATCCGAGATAAGCAGATT 59.821 37.037 0.00 0.00 0.00 2.40
566 567 6.665992 AAGGTATTACATCCGAGATAAGCA 57.334 37.500 0.00 0.00 0.00 3.91
568 569 8.979574 GTTCAAAGGTATTACATCCGAGATAAG 58.020 37.037 0.00 0.00 0.00 1.73
649 654 6.431198 ACCGCGACACTCAAAATAATTATT 57.569 33.333 8.23 4.81 0.00 1.40
692 698 5.367352 TCCAATTATGTACCCTAATGTCCGT 59.633 40.000 0.00 0.00 0.00 4.69
693 699 5.860611 TCCAATTATGTACCCTAATGTCCG 58.139 41.667 0.00 0.00 0.00 4.79
695 701 7.390718 GGTCATCCAATTATGTACCCTAATGTC 59.609 40.741 0.00 0.00 0.00 3.06
768 797 5.052693 TCTTTGCTATGTAAGGGCATCAT 57.947 39.130 0.00 0.00 35.84 2.45
856 885 6.125029 ACCTTCCTGATAGAAATGGATGTTG 58.875 40.000 0.00 0.00 0.00 3.33
979 1016 4.475051 TGAGATGCAAAAATGGGAATGG 57.525 40.909 0.00 0.00 0.00 3.16
1030 1067 2.815211 CCATCTCGGCACACACGG 60.815 66.667 0.00 0.00 0.00 4.94
1259 1296 0.244178 GACCTTCTTCCTCGTCGCTT 59.756 55.000 0.00 0.00 0.00 4.68
1263 1300 1.670380 GCTGTGACCTTCTTCCTCGTC 60.670 57.143 0.00 0.00 0.00 4.20
1290 1327 1.227674 CTTCTAGGATGGTGGCCGC 60.228 63.158 8.12 8.12 0.00 6.53
1338 1375 2.743928 CGTGGCCTCCTTGTGCTC 60.744 66.667 3.32 0.00 0.00 4.26
1457 1494 0.843309 TCTTGGCCTTGTCCTTGACA 59.157 50.000 3.32 0.00 41.09 3.58
1607 1644 2.525629 TTGGACGGCACCCTCAGA 60.526 61.111 0.00 0.00 0.00 3.27
1753 1790 8.600625 CGCACACATTTAATTACTGTACTGTAT 58.399 33.333 12.72 2.93 0.00 2.29
1771 1848 2.468670 AACGCACACACGCACACAT 61.469 52.632 0.00 0.00 36.19 3.21
1834 1912 2.476051 CGAAGCCATGACGCACAC 59.524 61.111 0.00 0.00 0.00 3.82
1873 3911 1.070445 GGGGAGTCGCATCCTGATG 59.930 63.158 9.66 2.72 39.50 3.07
1923 3961 2.539081 GGAGAGGGGGCCACACTTT 61.539 63.158 9.35 0.00 0.00 2.66
1994 4033 4.436998 CTGGGAGTCCACGCGGTC 62.437 72.222 12.47 0.00 38.32 4.79
2034 4088 0.984230 TGGTCACTCCTTCCATGTCC 59.016 55.000 0.00 0.00 37.07 4.02
2035 4089 1.065854 CCTGGTCACTCCTTCCATGTC 60.066 57.143 0.00 0.00 37.07 3.06
2044 4098 2.352032 CGGGACTCCTGGTCACTCC 61.352 68.421 0.00 0.00 45.64 3.85
2072 4127 1.571773 AAACCCTAGCCCTTGCCGAT 61.572 55.000 0.00 0.00 38.69 4.18
2084 4139 1.713297 GCGGGATCTAGGAAACCCTA 58.287 55.000 0.00 0.00 40.12 3.53
2101 4156 1.008995 CCAACGTTTCCTTGTGGCG 60.009 57.895 0.00 0.00 0.00 5.69
2105 4160 0.816421 CGGGTCCAACGTTTCCTTGT 60.816 55.000 0.00 0.00 0.00 3.16
2129 4184 2.513897 CGGGGCGAGGCTTTAAGG 60.514 66.667 0.00 0.00 0.00 2.69
2177 4232 2.123342 GCTTCCAAGATCGATCTGACG 58.877 52.381 27.93 18.87 37.19 4.35
2178 4233 3.122297 CAGCTTCCAAGATCGATCTGAC 58.878 50.000 27.93 13.55 37.19 3.51
2179 4234 3.026694 TCAGCTTCCAAGATCGATCTGA 58.973 45.455 27.93 18.57 37.19 3.27
2180 4235 3.449528 TCAGCTTCCAAGATCGATCTG 57.550 47.619 27.93 19.98 37.19 2.90
2183 4238 2.768527 TCCTTCAGCTTCCAAGATCGAT 59.231 45.455 0.00 0.00 0.00 3.59
2191 4246 0.117140 TCCTCCTCCTTCAGCTTCCA 59.883 55.000 0.00 0.00 0.00 3.53
2208 4263 1.025041 GGCCGAACCATTCAAGATCC 58.975 55.000 0.00 0.00 38.86 3.36
2209 4264 0.657840 CGGCCGAACCATTCAAGATC 59.342 55.000 24.07 0.00 39.03 2.75
2211 4266 1.376683 CCGGCCGAACCATTCAAGA 60.377 57.895 30.73 0.00 39.03 3.02
2212 4267 3.051392 GCCGGCCGAACCATTCAAG 62.051 63.158 30.73 6.52 39.03 3.02
2213 4268 3.059386 GCCGGCCGAACCATTCAA 61.059 61.111 30.73 0.00 39.03 2.69
2230 4285 3.995506 ATCTTTTCTGGCCGGGGCG 62.996 63.158 12.87 10.77 43.06 6.13
2231 4286 1.667154 GAATCTTTTCTGGCCGGGGC 61.667 60.000 14.65 14.65 41.06 5.80
2232 4287 1.037579 GGAATCTTTTCTGGCCGGGG 61.038 60.000 12.87 0.00 32.16 5.73
2233 4288 1.037579 GGGAATCTTTTCTGGCCGGG 61.038 60.000 12.87 0.00 32.16 5.73
2234 4289 0.034089 AGGGAATCTTTTCTGGCCGG 60.034 55.000 4.71 4.71 32.16 6.13
2235 4290 1.839424 AAGGGAATCTTTTCTGGCCG 58.161 50.000 0.00 0.00 29.99 6.13
2236 4291 3.165071 TGAAAGGGAATCTTTTCTGGCC 58.835 45.455 0.00 0.00 45.00 5.36
2237 4292 4.281941 AGTTGAAAGGGAATCTTTTCTGGC 59.718 41.667 10.38 0.00 45.00 4.85
2238 4293 7.709149 ATAGTTGAAAGGGAATCTTTTCTGG 57.291 36.000 10.38 0.00 45.00 3.86
2239 4294 8.796475 TGAATAGTTGAAAGGGAATCTTTTCTG 58.204 33.333 10.38 0.00 45.00 3.02
2240 4295 8.940397 TGAATAGTTGAAAGGGAATCTTTTCT 57.060 30.769 10.38 0.00 45.00 2.52
2244 4299 8.336235 TGGTATGAATAGTTGAAAGGGAATCTT 58.664 33.333 0.00 0.00 37.28 2.40
2245 4300 7.872138 TGGTATGAATAGTTGAAAGGGAATCT 58.128 34.615 0.00 0.00 0.00 2.40
2246 4301 7.229506 CCTGGTATGAATAGTTGAAAGGGAATC 59.770 40.741 0.00 0.00 0.00 2.52
2247 4302 7.062957 CCTGGTATGAATAGTTGAAAGGGAAT 58.937 38.462 0.00 0.00 0.00 3.01
2248 4303 6.423182 CCTGGTATGAATAGTTGAAAGGGAA 58.577 40.000 0.00 0.00 0.00 3.97
2249 4304 5.104109 CCCTGGTATGAATAGTTGAAAGGGA 60.104 44.000 0.00 0.00 42.78 4.20
2250 4305 5.133221 CCCTGGTATGAATAGTTGAAAGGG 58.867 45.833 0.00 0.00 35.04 3.95
2251 4306 4.580580 GCCCTGGTATGAATAGTTGAAAGG 59.419 45.833 0.00 0.00 0.00 3.11
2252 4307 4.273480 CGCCCTGGTATGAATAGTTGAAAG 59.727 45.833 0.00 0.00 0.00 2.62
2253 4308 4.080807 TCGCCCTGGTATGAATAGTTGAAA 60.081 41.667 0.00 0.00 0.00 2.69
2254 4309 3.452990 TCGCCCTGGTATGAATAGTTGAA 59.547 43.478 0.00 0.00 0.00 2.69
2255 4310 3.035363 TCGCCCTGGTATGAATAGTTGA 58.965 45.455 0.00 0.00 0.00 3.18
2310 4365 1.267532 CGCAGAATACGCAACATGTCC 60.268 52.381 0.00 0.00 0.00 4.02
2317 4372 1.153449 CTCCCCGCAGAATACGCAA 60.153 57.895 0.00 0.00 0.00 4.85
2349 4404 3.814504 ATGATCAAGGGGTTGTGTTCT 57.185 42.857 0.00 0.00 0.00 3.01
2404 4459 7.255035 CCATATTCTGACTTTATCCAGCTTGTG 60.255 40.741 0.00 0.00 0.00 3.33
2408 4463 5.370880 ACCCATATTCTGACTTTATCCAGCT 59.629 40.000 0.00 0.00 0.00 4.24
2423 4478 4.256920 CATCCGAATCCTCACCCATATTC 58.743 47.826 0.00 0.00 0.00 1.75
2458 4513 3.114606 TCCATTATTGCCTCAGTCCTCA 58.885 45.455 0.00 0.00 0.00 3.86
2478 4533 2.935201 CCAGCTTCACACATAGAGCTTC 59.065 50.000 0.00 0.00 0.00 3.86
2481 4536 1.208052 TCCCAGCTTCACACATAGAGC 59.792 52.381 0.00 0.00 0.00 4.09
2517 4572 2.499289 TCCCTCTGTTCTCATCAAGCTC 59.501 50.000 0.00 0.00 0.00 4.09
2520 4575 4.550076 AGTTCCCTCTGTTCTCATCAAG 57.450 45.455 0.00 0.00 0.00 3.02
2550 5012 1.369091 AATGGCATCGCGACCTGAAC 61.369 55.000 12.93 4.40 0.00 3.18
2553 5015 1.368345 TTCAATGGCATCGCGACCTG 61.368 55.000 12.93 8.44 0.00 4.00
2568 5030 3.410631 TGTTTCTAGTGGCCGATTCAA 57.589 42.857 0.00 0.00 0.00 2.69
2575 5037 1.369625 CACCGATGTTTCTAGTGGCC 58.630 55.000 0.00 0.00 0.00 5.36
2578 5040 0.999406 CGCCACCGATGTTTCTAGTG 59.001 55.000 0.00 0.00 36.29 2.74
2612 5074 3.513662 GACCTTAGTCCGCTTCTCTTTC 58.486 50.000 0.00 0.00 37.00 2.62
2613 5075 2.094649 CGACCTTAGTCCGCTTCTCTTT 60.095 50.000 0.00 0.00 40.12 2.52
2623 5085 2.444421 TCTCCAACTCGACCTTAGTCC 58.556 52.381 0.00 0.00 40.12 3.85
2624 5086 4.158025 TGAATCTCCAACTCGACCTTAGTC 59.842 45.833 0.00 0.00 39.83 2.59
2651 5113 3.436700 AAGAAGTTGGGCAGTTTTTCG 57.563 42.857 0.00 0.00 0.00 3.46
2694 5156 3.849911 TCACACATGATTTCTCCTCGTC 58.150 45.455 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.