Multiple sequence alignment - TraesCS6D01G284500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G284500 chr6D 100.000 4573 0 0 1 4573 391943739 391939167 0.000000e+00 8445.0
1 TraesCS6D01G284500 chr6D 84.722 72 6 3 4018 4087 83109145 83109213 2.950000e-07 67.6
2 TraesCS6D01G284500 chr6B 92.072 3103 142 40 605 3655 585573406 585570356 0.000000e+00 4272.0
3 TraesCS6D01G284500 chr6B 88.032 376 31 7 3645 4016 585570207 585569842 2.530000e-117 433.0
4 TraesCS6D01G284500 chr6B 87.013 231 23 4 377 606 585573709 585573485 2.110000e-63 254.0
5 TraesCS6D01G284500 chr6B 94.656 131 5 2 4444 4573 585569560 585569431 7.760000e-48 202.0
6 TraesCS6D01G284500 chr6B 92.929 99 7 0 4116 4214 585569656 585569558 1.330000e-30 145.0
7 TraesCS6D01G284500 chr6A 91.143 3026 151 43 605 3585 538059581 538056628 0.000000e+00 3995.0
8 TraesCS6D01G284500 chr6A 95.745 235 10 0 4264 4498 538050656 538050422 3.340000e-101 379.0
9 TraesCS6D01G284500 chr6A 90.421 261 22 3 45 302 514037325 514037585 1.580000e-89 340.0
10 TraesCS6D01G284500 chr6A 95.294 85 4 0 4119 4203 538050736 538050652 7.980000e-28 135.0
11 TraesCS6D01G284500 chr6A 90.141 71 4 2 4018 4087 99819981 99820049 6.300000e-14 89.8
12 TraesCS6D01G284500 chr7A 90.840 262 21 3 44 302 449650572 449650311 9.420000e-92 348.0
13 TraesCS6D01G284500 chr7A 90.226 266 22 4 45 306 578444494 578444759 1.220000e-90 344.0
14 TraesCS6D01G284500 chr7A 89.513 267 24 4 39 301 618658330 618658596 7.330000e-88 335.0
15 TraesCS6D01G284500 chr7A 100.000 28 0 0 4089 4116 20051640 20051667 8.000000e-03 52.8
16 TraesCS6D01G284500 chr1D 90.840 262 21 3 44 302 463473121 463472860 9.420000e-92 348.0
17 TraesCS6D01G284500 chr4A 89.888 267 25 2 42 306 112854407 112854673 4.380000e-90 342.0
18 TraesCS6D01G284500 chr4A 90.076 262 23 3 44 302 62950513 62950252 2.040000e-88 337.0
19 TraesCS6D01G284500 chr1A 89.811 265 23 4 45 305 511704434 511704170 2.040000e-88 337.0
20 TraesCS6D01G284500 chr1A 100.000 29 0 0 4088 4116 394878121 394878093 2.000000e-03 54.7
21 TraesCS6D01G284500 chr5D 89.773 264 23 4 45 305 26564820 26564558 7.330000e-88 335.0
22 TraesCS6D01G284500 chr5D 84.058 69 5 3 4017 4085 346639903 346639841 1.370000e-05 62.1
23 TraesCS6D01G284500 chr2A 84.158 101 9 3 4017 4116 628670163 628670069 1.750000e-14 91.6
24 TraesCS6D01G284500 chr2A 97.368 38 1 0 4017 4054 636904731 636904694 1.060000e-06 65.8
25 TraesCS6D01G284500 chr4D 81.609 87 8 6 4017 4101 468361508 468361428 1.060000e-06 65.8
26 TraesCS6D01G284500 chr3B 84.507 71 5 4 4017 4087 647906956 647907020 1.060000e-06 65.8
27 TraesCS6D01G284500 chr5B 100.000 33 0 0 4017 4049 404188093 404188125 1.370000e-05 62.1
28 TraesCS6D01G284500 chr5A 82.857 70 6 5 4018 4087 366635347 366635410 1.780000e-04 58.4
29 TraesCS6D01G284500 chr7D 96.970 33 1 0 4084 4116 625355977 625356009 6.390000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G284500 chr6D 391939167 391943739 4572 True 8445.0 8445 100.0000 1 4573 1 chr6D.!!$R1 4572
1 TraesCS6D01G284500 chr6B 585569431 585573709 4278 True 1061.2 4272 90.9404 377 4573 5 chr6B.!!$R1 4196
2 TraesCS6D01G284500 chr6A 538056628 538059581 2953 True 3995.0 3995 91.1430 605 3585 1 chr6A.!!$R1 2980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 520 0.175760 GACATTCGAGCACAGGCCTA 59.824 55.000 3.98 0.0 42.56 3.93 F
1301 1386 2.100631 CCGCGCCAAGAAATCGTCT 61.101 57.895 0.00 0.0 38.69 4.18 F
1734 1834 1.523758 ACCAAAGTCGATGTTGGAGC 58.476 50.000 27.56 0.0 46.11 4.70 F
3071 3191 0.392336 TTGTGCAAACCCATGCCTTC 59.608 50.000 0.00 0.0 45.83 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1819 0.035317 TGCAGCTCCAACATCGACTT 59.965 50.000 0.00 0.0 0.00 3.01 R
2916 3036 2.003301 GAAGGAATTCAGTCGGTCAGC 58.997 52.381 7.93 0.0 0.00 4.26 R
3301 3438 0.537143 TGCAGGGCGACAAAGATGTT 60.537 50.000 0.00 0.0 40.74 2.71 R
4242 4632 0.036199 TACCACGGCGGCATAAAACT 60.036 50.000 13.24 0.0 39.03 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.938129 GATTTTCTCAATGTTTTGCAGCG 58.062 39.130 0.00 0.00 32.61 5.18
23 24 3.706802 TTTCTCAATGTTTTGCAGCGA 57.293 38.095 0.00 0.00 32.61 4.93
24 25 2.975410 TCTCAATGTTTTGCAGCGAG 57.025 45.000 0.00 0.00 33.20 5.03
25 26 1.069022 TCTCAATGTTTTGCAGCGAGC 60.069 47.619 0.00 0.00 45.96 5.03
41 42 7.858052 GCAGCGAGCATTAAATATTTATTGT 57.142 32.000 22.08 13.76 44.79 2.71
42 43 8.285776 GCAGCGAGCATTAAATATTTATTGTT 57.714 30.769 22.08 18.82 44.79 2.83
43 44 9.393249 GCAGCGAGCATTAAATATTTATTGTTA 57.607 29.630 22.08 5.76 44.79 2.41
58 59 7.649533 TTTATTGTTATACTCTCTCCGGACA 57.350 36.000 0.00 0.00 0.00 4.02
59 60 7.834881 TTATTGTTATACTCTCTCCGGACAT 57.165 36.000 0.00 0.00 0.00 3.06
60 61 6.732896 ATTGTTATACTCTCTCCGGACATT 57.267 37.500 0.00 0.00 0.00 2.71
61 62 6.540438 TTGTTATACTCTCTCCGGACATTT 57.460 37.500 0.00 0.00 0.00 2.32
62 63 6.540438 TGTTATACTCTCTCCGGACATTTT 57.460 37.500 0.00 0.00 0.00 1.82
63 64 7.649533 TGTTATACTCTCTCCGGACATTTTA 57.350 36.000 0.00 0.00 0.00 1.52
64 65 7.713750 TGTTATACTCTCTCCGGACATTTTAG 58.286 38.462 0.00 0.00 0.00 1.85
65 66 7.341256 TGTTATACTCTCTCCGGACATTTTAGT 59.659 37.037 0.00 1.16 0.00 2.24
66 67 6.793505 ATACTCTCTCCGGACATTTTAGTT 57.206 37.500 0.00 0.00 0.00 2.24
67 68 5.074584 ACTCTCTCCGGACATTTTAGTTC 57.925 43.478 0.00 0.00 0.00 3.01
68 69 4.527038 ACTCTCTCCGGACATTTTAGTTCA 59.473 41.667 0.00 0.00 0.00 3.18
69 70 4.817517 TCTCTCCGGACATTTTAGTTCAC 58.182 43.478 0.00 0.00 0.00 3.18
70 71 4.282449 TCTCTCCGGACATTTTAGTTCACA 59.718 41.667 0.00 0.00 0.00 3.58
71 72 5.046591 TCTCTCCGGACATTTTAGTTCACAT 60.047 40.000 0.00 0.00 0.00 3.21
72 73 6.153851 TCTCTCCGGACATTTTAGTTCACATA 59.846 38.462 0.00 0.00 0.00 2.29
73 74 6.884832 TCTCCGGACATTTTAGTTCACATAT 58.115 36.000 0.00 0.00 0.00 1.78
74 75 8.014070 TCTCCGGACATTTTAGTTCACATATA 57.986 34.615 0.00 0.00 0.00 0.86
75 76 8.479689 TCTCCGGACATTTTAGTTCACATATAA 58.520 33.333 0.00 0.00 0.00 0.98
76 77 8.657074 TCCGGACATTTTAGTTCACATATAAG 57.343 34.615 0.00 0.00 0.00 1.73
77 78 8.479689 TCCGGACATTTTAGTTCACATATAAGA 58.520 33.333 0.00 0.00 0.00 2.10
78 79 9.273016 CCGGACATTTTAGTTCACATATAAGAT 57.727 33.333 0.00 0.00 0.00 2.40
110 111 9.974980 TGAAATCAAACCTCATAAACTTTAACC 57.025 29.630 0.00 0.00 0.00 2.85
111 112 9.974980 GAAATCAAACCTCATAAACTTTAACCA 57.025 29.630 0.00 0.00 0.00 3.67
113 114 9.981114 AATCAAACCTCATAAACTTTAACCAAG 57.019 29.630 0.00 0.00 38.64 3.61
151 152 8.954950 ACACCAACATTTAAAATGTGAAATCA 57.045 26.923 0.00 0.00 31.80 2.57
152 153 9.388506 ACACCAACATTTAAAATGTGAAATCAA 57.611 25.926 0.00 0.00 31.80 2.57
153 154 9.649024 CACCAACATTTAAAATGTGAAATCAAC 57.351 29.630 0.00 0.00 31.80 3.18
154 155 9.388506 ACCAACATTTAAAATGTGAAATCAACA 57.611 25.926 0.00 0.00 31.80 3.33
165 166 8.470040 AATGTGAAATCAACAACATTAGATGC 57.530 30.769 0.00 0.00 0.00 3.91
166 167 6.085573 TGTGAAATCAACAACATTAGATGCG 58.914 36.000 0.00 0.00 0.00 4.73
167 168 6.086222 GTGAAATCAACAACATTAGATGCGT 58.914 36.000 0.00 0.00 0.00 5.24
168 169 6.249260 GTGAAATCAACAACATTAGATGCGTC 59.751 38.462 0.00 0.00 0.00 5.19
169 170 5.878332 AATCAACAACATTAGATGCGTCA 57.122 34.783 8.99 0.00 0.00 4.35
170 171 6.441093 AATCAACAACATTAGATGCGTCAT 57.559 33.333 8.99 0.00 0.00 3.06
171 172 5.220557 TCAACAACATTAGATGCGTCATG 57.779 39.130 8.99 6.69 0.00 3.07
172 173 4.934602 TCAACAACATTAGATGCGTCATGA 59.065 37.500 8.99 0.00 0.00 3.07
173 174 4.864916 ACAACATTAGATGCGTCATGAC 57.135 40.909 16.21 16.21 0.00 3.06
174 175 4.507710 ACAACATTAGATGCGTCATGACT 58.492 39.130 22.95 4.97 0.00 3.41
175 176 4.937620 ACAACATTAGATGCGTCATGACTT 59.062 37.500 22.95 8.27 0.00 3.01
176 177 5.412594 ACAACATTAGATGCGTCATGACTTT 59.587 36.000 22.95 7.92 0.00 2.66
177 178 6.593770 ACAACATTAGATGCGTCATGACTTTA 59.406 34.615 22.95 9.76 0.00 1.85
178 179 6.834959 ACATTAGATGCGTCATGACTTTAG 57.165 37.500 22.95 9.02 0.00 1.85
179 180 6.341316 ACATTAGATGCGTCATGACTTTAGT 58.659 36.000 22.95 8.00 0.00 2.24
180 181 6.818644 ACATTAGATGCGTCATGACTTTAGTT 59.181 34.615 22.95 7.42 0.00 2.24
181 182 7.334421 ACATTAGATGCGTCATGACTTTAGTTT 59.666 33.333 22.95 5.95 0.00 2.66
182 183 7.667043 TTAGATGCGTCATGACTTTAGTTTT 57.333 32.000 22.95 4.61 0.00 2.43
183 184 6.170675 AGATGCGTCATGACTTTAGTTTTC 57.829 37.500 22.95 8.71 0.00 2.29
184 185 5.700832 AGATGCGTCATGACTTTAGTTTTCA 59.299 36.000 22.95 7.45 0.00 2.69
185 186 5.940192 TGCGTCATGACTTTAGTTTTCAT 57.060 34.783 22.95 0.00 0.00 2.57
186 187 7.549134 AGATGCGTCATGACTTTAGTTTTCATA 59.451 33.333 22.95 0.00 0.00 2.15
187 188 7.609760 TGCGTCATGACTTTAGTTTTCATAT 57.390 32.000 22.95 0.00 0.00 1.78
188 189 8.039603 TGCGTCATGACTTTAGTTTTCATATT 57.960 30.769 22.95 0.00 0.00 1.28
189 190 7.962373 TGCGTCATGACTTTAGTTTTCATATTG 59.038 33.333 22.95 3.02 0.00 1.90
190 191 7.962918 GCGTCATGACTTTAGTTTTCATATTGT 59.037 33.333 22.95 0.00 0.00 2.71
304 305 4.569719 AAAAAGACCGGATGGAGTACAT 57.430 40.909 9.46 0.00 44.18 2.29
305 306 5.687166 AAAAAGACCGGATGGAGTACATA 57.313 39.130 9.46 0.00 40.72 2.29
306 307 5.687166 AAAAGACCGGATGGAGTACATAA 57.313 39.130 9.46 0.00 40.72 1.90
307 308 5.687166 AAAGACCGGATGGAGTACATAAA 57.313 39.130 9.46 0.00 40.72 1.40
308 309 5.687166 AAGACCGGATGGAGTACATAAAA 57.313 39.130 9.46 0.00 40.72 1.52
309 310 5.687166 AGACCGGATGGAGTACATAAAAA 57.313 39.130 9.46 0.00 40.72 1.94
356 357 3.859411 TTTTTGCGGGGAACATGTATC 57.141 42.857 0.00 0.00 0.00 2.24
357 358 2.498644 TTTGCGGGGAACATGTATCA 57.501 45.000 0.00 0.00 0.00 2.15
358 359 2.727123 TTGCGGGGAACATGTATCAT 57.273 45.000 0.00 0.00 0.00 2.45
359 360 2.727123 TGCGGGGAACATGTATCATT 57.273 45.000 0.00 0.00 0.00 2.57
360 361 3.847671 TGCGGGGAACATGTATCATTA 57.152 42.857 0.00 0.00 0.00 1.90
361 362 4.365514 TGCGGGGAACATGTATCATTAT 57.634 40.909 0.00 0.00 0.00 1.28
362 363 4.724399 TGCGGGGAACATGTATCATTATT 58.276 39.130 0.00 0.00 0.00 1.40
363 364 4.518590 TGCGGGGAACATGTATCATTATTG 59.481 41.667 0.00 0.00 0.00 1.90
364 365 4.518970 GCGGGGAACATGTATCATTATTGT 59.481 41.667 0.00 0.00 0.00 2.71
365 366 5.009610 GCGGGGAACATGTATCATTATTGTT 59.990 40.000 0.00 0.00 33.47 2.83
366 367 6.437928 CGGGGAACATGTATCATTATTGTTG 58.562 40.000 0.00 0.00 31.09 3.33
367 368 6.215845 GGGGAACATGTATCATTATTGTTGC 58.784 40.000 0.00 0.00 37.74 4.17
368 369 5.914635 GGGAACATGTATCATTATTGTTGCG 59.085 40.000 0.00 0.00 38.87 4.85
369 370 5.399301 GGAACATGTATCATTATTGTTGCGC 59.601 40.000 0.00 0.00 30.83 6.09
370 371 4.526625 ACATGTATCATTATTGTTGCGCG 58.473 39.130 0.00 0.00 0.00 6.86
371 372 3.600717 TGTATCATTATTGTTGCGCGG 57.399 42.857 8.83 0.00 0.00 6.46
372 373 2.939756 TGTATCATTATTGTTGCGCGGT 59.060 40.909 8.83 0.00 0.00 5.68
373 374 3.375610 TGTATCATTATTGTTGCGCGGTT 59.624 39.130 8.83 0.00 0.00 4.44
374 375 2.999507 TCATTATTGTTGCGCGGTTT 57.000 40.000 8.83 0.00 0.00 3.27
375 376 2.590073 TCATTATTGTTGCGCGGTTTG 58.410 42.857 8.83 0.00 0.00 2.93
379 380 0.317770 ATTGTTGCGCGGTTTGTGAG 60.318 50.000 8.83 0.00 0.00 3.51
391 392 4.915667 GCGGTTTGTGAGGAAAAATCTTAC 59.084 41.667 0.00 0.00 0.00 2.34
392 393 5.144359 CGGTTTGTGAGGAAAAATCTTACG 58.856 41.667 0.00 0.00 0.00 3.18
399 400 5.795441 GTGAGGAAAAATCTTACGACAATGC 59.205 40.000 0.00 0.00 0.00 3.56
407 408 2.857748 TCTTACGACAATGCTGCATACG 59.142 45.455 23.98 23.98 0.00 3.06
432 433 8.503196 CGCAGGAAAAATATATTATAGCACACA 58.497 33.333 0.00 0.00 0.00 3.72
433 434 9.612620 GCAGGAAAAATATATTATAGCACACAC 57.387 33.333 0.00 0.00 0.00 3.82
434 435 9.811655 CAGGAAAAATATATTATAGCACACACG 57.188 33.333 0.00 0.00 0.00 4.49
448 449 3.717749 GCACACACGATTTTATTTTGCGC 60.718 43.478 0.00 0.00 0.00 6.09
450 451 4.045104 ACACACGATTTTATTTTGCGCAA 58.955 34.783 21.02 21.02 0.00 4.85
453 454 4.683781 ACACGATTTTATTTTGCGCAACAT 59.316 33.333 24.99 24.29 0.00 2.71
481 482 0.819582 TTTAAGCGGTCGACTAGGGG 59.180 55.000 16.46 1.40 0.00 4.79
489 490 2.007568 TCGACTAGGGGCTCCTCCT 61.008 63.158 9.55 0.00 43.66 3.69
490 491 1.529713 CGACTAGGGGCTCCTCCTC 60.530 68.421 9.55 3.41 43.66 3.71
491 492 1.152419 GACTAGGGGCTCCTCCTCC 60.152 68.421 9.55 0.00 43.66 4.30
492 493 2.203567 CTAGGGGCTCCTCCTCCG 60.204 72.222 9.55 0.00 43.66 4.63
502 503 3.827898 CTCCTCCGCCTGTCCGAC 61.828 72.222 0.00 0.00 0.00 4.79
503 504 4.671590 TCCTCCGCCTGTCCGACA 62.672 66.667 0.29 0.29 0.00 4.35
505 506 2.579201 CTCCGCCTGTCCGACATT 59.421 61.111 0.62 0.00 0.00 2.71
513 514 0.388520 CTGTCCGACATTCGAGCACA 60.389 55.000 0.62 0.00 43.74 4.57
518 519 1.078848 GACATTCGAGCACAGGCCT 60.079 57.895 0.00 0.00 42.56 5.19
519 520 0.175760 GACATTCGAGCACAGGCCTA 59.824 55.000 3.98 0.00 42.56 3.93
534 535 6.627953 GCACAGGCCTAAAAATACATTGTCAT 60.628 38.462 3.98 0.00 0.00 3.06
571 572 7.041107 GCACACACAAAACATTTGGGATATAT 58.959 34.615 11.73 0.00 0.00 0.86
572 573 8.194104 GCACACACAAAACATTTGGGATATATA 58.806 33.333 11.73 0.00 0.00 0.86
576 577 6.861055 CACAAAACATTTGGGATATATACCGC 59.139 38.462 9.54 0.00 31.47 5.68
649 730 4.202121 GCCATCACCTCTACGATTCTACAA 60.202 45.833 0.00 0.00 0.00 2.41
680 761 2.587522 CACGATCCTCTCCAGATACCA 58.412 52.381 0.00 0.00 0.00 3.25
756 837 3.117398 TCTCCCTACTAAATCCACCGCTA 60.117 47.826 0.00 0.00 0.00 4.26
912 996 2.460918 CCAGATTACGCAACTACTCGG 58.539 52.381 0.00 0.00 0.00 4.63
1301 1386 2.100631 CCGCGCCAAGAAATCGTCT 61.101 57.895 0.00 0.00 38.69 4.18
1313 1398 3.053544 AGAAATCGTCTGGAGGAGGTAGA 60.054 47.826 0.00 0.00 34.29 2.59
1314 1399 3.603965 AATCGTCTGGAGGAGGTAGAT 57.396 47.619 0.00 0.00 0.00 1.98
1355 1441 2.545742 CCCCTTTTGTGCTGCTTGTTAC 60.546 50.000 0.00 0.00 0.00 2.50
1356 1442 2.362077 CCCTTTTGTGCTGCTTGTTACT 59.638 45.455 0.00 0.00 0.00 2.24
1357 1443 3.550842 CCCTTTTGTGCTGCTTGTTACTC 60.551 47.826 0.00 0.00 0.00 2.59
1358 1444 3.550842 CCTTTTGTGCTGCTTGTTACTCC 60.551 47.826 0.00 0.00 0.00 3.85
1472 1564 6.070596 GGAAGGAAAGAATGGGATGTCAAATT 60.071 38.462 0.00 0.00 0.00 1.82
1520 1612 3.267031 AGGGGAAGAGAAAAGGTGTATGG 59.733 47.826 0.00 0.00 0.00 2.74
1540 1632 4.728772 TGGTATGATTTGCCCTTATGAGG 58.271 43.478 0.00 0.00 43.15 3.86
1687 1779 4.082733 GCCCTCTTGTTGAAGGTATTGAAC 60.083 45.833 0.00 0.00 33.62 3.18
1703 1795 9.927081 AGGTATTGAACAATATTCTGAATTCCT 57.073 29.630 8.38 6.26 35.90 3.36
1704 1796 9.956720 GGTATTGAACAATATTCTGAATTCCTG 57.043 33.333 8.38 6.39 35.90 3.86
1719 1819 7.723616 TCTGAATTCCTGATAAAACAGAACCAA 59.276 33.333 2.27 0.00 39.94 3.67
1721 1821 8.359642 TGAATTCCTGATAAAACAGAACCAAAG 58.640 33.333 2.27 0.00 39.94 2.77
1728 1828 6.485313 TGATAAAACAGAACCAAAGTCGATGT 59.515 34.615 0.00 0.00 0.00 3.06
1734 1834 1.523758 ACCAAAGTCGATGTTGGAGC 58.476 50.000 27.56 0.00 46.11 4.70
1742 1843 2.478134 GTCGATGTTGGAGCTGCATATC 59.522 50.000 9.39 14.76 0.00 1.63
1750 1852 1.671979 GAGCTGCATATCTTGTGCCA 58.328 50.000 1.02 0.00 41.83 4.92
1764 1866 2.912771 TGTGCCACCATTCTAATACGG 58.087 47.619 0.00 0.00 0.00 4.02
1814 1916 5.590663 AGAAGAGGTTCTTTTCCAGTTGAAC 59.409 40.000 0.00 0.00 40.35 3.18
1860 1963 9.901172 TTGGTTAGTTCTTATCCTCCTAAATTC 57.099 33.333 0.00 0.00 0.00 2.17
2013 2121 7.118680 GGTTATTCATTCTTCGACAGGTTTGTA 59.881 37.037 0.00 0.00 37.76 2.41
2057 2165 4.263139 GCAGTTTGCAAAAGGAAAGTTG 57.737 40.909 14.67 4.07 44.26 3.16
2087 2196 7.618137 TGATGCTTGTACTGATGCATAGATAT 58.382 34.615 0.00 0.00 44.80 1.63
2104 2213 7.809806 GCATAGATATTAATGGCAAGGTTTGTC 59.190 37.037 0.00 0.00 35.37 3.18
2185 2294 6.480981 CAGTTGCTCAAATTTTCAAGGTTCAT 59.519 34.615 0.00 0.00 0.00 2.57
2217 2326 7.292120 AGCCTTCTTCAGAGATAATGAGGTAAT 59.708 37.037 0.00 0.00 30.68 1.89
2222 2331 9.434275 TCTTCAGAGATAATGAGGTAATGGTTA 57.566 33.333 0.00 0.00 0.00 2.85
2236 2345 6.543831 AGGTAATGGTTACTGAATTCATCTGC 59.456 38.462 8.96 0.50 36.39 4.26
2284 2398 9.502091 TTGTAGCTTTCATTTGTTACTAGTGAT 57.498 29.630 5.39 0.00 0.00 3.06
2285 2399 9.502091 TGTAGCTTTCATTTGTTACTAGTGATT 57.498 29.630 5.39 0.00 0.00 2.57
2288 2402 9.066892 AGCTTTCATTTGTTACTAGTGATTTGA 57.933 29.630 5.39 0.00 0.00 2.69
2289 2403 9.677567 GCTTTCATTTGTTACTAGTGATTTGAA 57.322 29.630 5.39 4.90 0.00 2.69
2305 2419 8.863086 AGTGATTTGAAATTCTGAATTGGAAGA 58.137 29.630 15.80 3.35 0.00 2.87
2357 2473 5.654603 TCCGAGACTTAAGTGCTGATTTA 57.345 39.130 14.14 0.00 0.00 1.40
2533 2649 6.036083 TCTCTTTTGCTGATAGATAACGTTGC 59.964 38.462 11.99 3.37 0.00 4.17
2916 3036 5.065218 GCATTCTCTGTTAGTGTTGGTATGG 59.935 44.000 0.00 0.00 0.00 2.74
2965 3085 1.541588 GGCCTTTTCGAAACTCAGCAT 59.458 47.619 10.79 0.00 0.00 3.79
3071 3191 0.392336 TTGTGCAAACCCATGCCTTC 59.608 50.000 0.00 0.00 45.83 3.46
3080 3200 3.979501 ACCCATGCCTTCCAATCTATT 57.020 42.857 0.00 0.00 0.00 1.73
3107 3227 9.216117 GAATATCAGAACATGTGATCATCATCA 57.784 33.333 0.00 0.00 36.11 3.07
3120 3240 7.938140 TGATCATCATCAATCACATATGCAT 57.062 32.000 3.79 3.79 35.99 3.96
3122 3242 7.393234 TGATCATCATCAATCACATATGCATGT 59.607 33.333 10.16 0.00 39.87 3.21
3148 3268 5.185828 ACTTCCAAGGAATAACAAATCTGCC 59.814 40.000 1.35 0.00 33.28 4.85
3182 3302 1.342819 GAGATCGCATCTAAGCTGGGT 59.657 52.381 0.00 0.00 40.38 4.51
3263 3400 0.398696 TAGTCGTTTGGGTGCCACAT 59.601 50.000 0.00 0.00 30.78 3.21
3301 3438 3.500448 TTCCACAAGTGCCTGAACATA 57.500 42.857 0.00 0.00 0.00 2.29
3315 3452 4.437390 CCTGAACATAACATCTTTGTCGCC 60.437 45.833 0.00 0.00 34.06 5.54
3391 3528 2.151202 ACTCACAAACGGAATCGCAAT 58.849 42.857 0.00 0.00 40.63 3.56
3402 3539 3.303593 CGGAATCGCAATCTCAAAGGATG 60.304 47.826 0.00 0.00 0.00 3.51
3484 3621 6.090763 CACAGCTGAGTTATTCATTCGTTGTA 59.909 38.462 23.35 0.00 34.68 2.41
3490 3627 6.474427 TGAGTTATTCATTCGTTGTATCGACC 59.526 38.462 0.00 0.00 39.58 4.79
3501 3638 0.030908 GTATCGACCAGGAGGAAGCG 59.969 60.000 0.00 0.00 38.69 4.68
3502 3639 1.735376 TATCGACCAGGAGGAAGCGC 61.735 60.000 0.00 0.00 38.69 5.92
3503 3640 3.764466 CGACCAGGAGGAAGCGCT 61.764 66.667 2.64 2.64 38.69 5.92
3504 3641 2.125350 GACCAGGAGGAAGCGCTG 60.125 66.667 12.58 0.00 38.69 5.18
3506 3643 3.393970 CCAGGAGGAAGCGCTGGA 61.394 66.667 12.58 0.00 37.37 3.86
3507 3644 2.186384 CAGGAGGAAGCGCTGGAG 59.814 66.667 12.58 0.00 0.00 3.86
3509 3646 2.125350 GGAGGAAGCGCTGGAGTG 60.125 66.667 12.58 0.00 0.00 3.51
3607 3749 0.332632 TCCCCCTGGCTTGATGAAAG 59.667 55.000 0.00 0.00 39.07 2.62
3608 3750 0.332632 CCCCCTGGCTTGATGAAAGA 59.667 55.000 0.00 0.00 38.24 2.52
3609 3751 1.272648 CCCCCTGGCTTGATGAAAGAA 60.273 52.381 0.00 0.00 38.24 2.52
3610 3752 2.528564 CCCCTGGCTTGATGAAAGAAA 58.471 47.619 0.00 0.00 38.24 2.52
3630 3772 8.934023 AAGAAAACAATATGTCACCTTCCTTA 57.066 30.769 0.00 0.00 0.00 2.69
3655 3797 2.234143 GCCTCCTTGGATTGGATAAGC 58.766 52.381 0.00 0.00 38.35 3.09
3656 3798 2.868899 CCTCCTTGGATTGGATAAGCC 58.131 52.381 0.00 0.00 42.72 4.35
3658 3800 2.444766 CTCCTTGGATTGGATAAGCCCT 59.555 50.000 0.00 0.00 41.71 5.19
3659 3801 2.858768 TCCTTGGATTGGATAAGCCCTT 59.141 45.455 0.00 0.00 41.71 3.95
3676 3978 1.633432 CCTTGTCATAGGGGTTGGTCA 59.367 52.381 0.00 0.00 0.00 4.02
3767 4069 1.359848 GACAAGCATCGTCGTCCATT 58.640 50.000 0.00 0.00 0.00 3.16
3779 4081 7.535997 CATCGTCGTCCATTTAGATATAGGAA 58.464 38.462 0.00 0.00 0.00 3.36
3789 4091 0.977395 GATATAGGAACGCTGGGGCT 59.023 55.000 0.00 0.00 36.09 5.19
3799 4101 4.512914 CTGGGGCTTGGCTAGGGC 62.513 72.222 0.00 0.00 37.82 5.19
3825 4128 3.168528 ACACTGTTCCCCGTGGCT 61.169 61.111 0.00 0.00 35.51 4.75
3828 4131 2.672996 CTGTTCCCCGTGGCTTGG 60.673 66.667 0.00 0.00 0.00 3.61
3829 4132 4.966787 TGTTCCCCGTGGCTTGGC 62.967 66.667 0.00 0.00 0.00 4.52
3830 4133 4.966787 GTTCCCCGTGGCTTGGCA 62.967 66.667 0.00 0.00 0.00 4.92
3831 4134 4.211330 TTCCCCGTGGCTTGGCAA 62.211 61.111 0.00 0.00 0.00 4.52
3832 4135 3.521765 TTCCCCGTGGCTTGGCAAT 62.522 57.895 0.00 0.00 0.00 3.56
3833 4136 3.762247 CCCCGTGGCTTGGCAATG 61.762 66.667 0.00 0.00 0.00 2.82
3834 4137 3.762247 CCCGTGGCTTGGCAATGG 61.762 66.667 0.00 4.28 38.33 3.16
3836 4139 2.703798 CCGTGGCTTGGCAATGGAG 61.704 63.158 0.00 0.00 40.96 3.86
3856 4159 1.475169 TAGATCTGGAGGCGCCCATG 61.475 60.000 26.15 11.56 35.33 3.66
3869 4172 2.827190 CCATGCGCAGTGGCTGAT 60.827 61.111 18.32 0.00 38.10 2.90
3870 4173 2.713770 CATGCGCAGTGGCTGATC 59.286 61.111 18.32 0.00 38.10 2.92
3873 4176 3.857854 GCGCAGTGGCTGATCGTG 61.858 66.667 0.30 0.00 38.10 4.35
3884 4188 1.203928 CTGATCGTGCGTCCTGAATC 58.796 55.000 0.00 0.00 0.00 2.52
3889 4193 1.148310 CGTGCGTCCTGAATCTGTTT 58.852 50.000 0.00 0.00 0.00 2.83
3892 4196 2.096218 GTGCGTCCTGAATCTGTTTCAC 60.096 50.000 0.00 0.00 39.44 3.18
3906 4210 5.049167 TCTGTTTCACAATTGGATTGCAAC 58.951 37.500 10.83 6.74 43.98 4.17
3912 4216 5.412640 TCACAATTGGATTGCAACATCATC 58.587 37.500 10.83 0.00 43.98 2.92
3915 4219 6.035650 CACAATTGGATTGCAACATCATCTTC 59.964 38.462 10.83 0.00 43.98 2.87
3916 4220 4.359971 TTGGATTGCAACATCATCTTCG 57.640 40.909 0.00 0.00 0.00 3.79
3918 4222 4.201657 TGGATTGCAACATCATCTTCGAT 58.798 39.130 0.00 0.00 0.00 3.59
3921 4225 7.160726 TGGATTGCAACATCATCTTCGATATA 58.839 34.615 0.00 0.00 0.00 0.86
3922 4226 7.661027 TGGATTGCAACATCATCTTCGATATAA 59.339 33.333 0.00 0.00 0.00 0.98
3923 4227 8.173775 GGATTGCAACATCATCTTCGATATAAG 58.826 37.037 0.00 0.00 0.00 1.73
3924 4228 8.837788 ATTGCAACATCATCTTCGATATAAGA 57.162 30.769 0.00 0.00 39.71 2.10
3966 4270 0.179048 TGATGGCTTATCCGGTGCAG 60.179 55.000 0.00 0.00 37.80 4.41
3990 4294 0.882042 CCTACGGCCATAGCAAGCTG 60.882 60.000 2.24 0.00 42.56 4.24
3991 4295 2.671070 ACGGCCATAGCAAGCTGT 59.329 55.556 2.24 0.00 43.72 4.40
3992 4296 0.251916 TACGGCCATAGCAAGCTGTT 59.748 50.000 2.24 0.00 46.31 3.16
3994 4298 0.099436 CGGCCATAGCAAGCTGTTTC 59.901 55.000 2.24 0.00 42.56 2.78
3995 4299 1.176527 GGCCATAGCAAGCTGTTTCA 58.823 50.000 4.53 0.00 42.56 2.69
3996 4300 1.135286 GGCCATAGCAAGCTGTTTCAC 60.135 52.381 4.53 0.00 42.56 3.18
3997 4301 1.815003 GCCATAGCAAGCTGTTTCACT 59.185 47.619 4.53 0.00 39.53 3.41
3998 4302 2.415090 GCCATAGCAAGCTGTTTCACTG 60.415 50.000 4.53 0.00 39.53 3.66
4016 4320 1.177895 TGGTACAACCTGCGTCGGTA 61.178 55.000 0.00 0.00 39.58 4.02
4017 4321 0.174162 GGTACAACCTGCGTCGGTAT 59.826 55.000 0.00 0.00 35.89 2.73
4019 4323 2.035066 GGTACAACCTGCGTCGGTATAT 59.965 50.000 0.00 0.00 35.89 0.86
4020 4324 3.253188 GGTACAACCTGCGTCGGTATATA 59.747 47.826 0.00 0.00 35.89 0.86
4022 4326 3.973657 ACAACCTGCGTCGGTATATAAG 58.026 45.455 0.00 0.00 35.89 1.73
4034 4380 7.806960 GCGTCGGTATATAAGATGTTCTAACTT 59.193 37.037 0.00 0.00 0.00 2.66
4059 4407 7.487822 TTTTCTGAATCAGATCTAGGAGTGT 57.512 36.000 14.31 0.00 40.39 3.55
4093 4454 6.816640 GCCTGAGTGTGTTTGTTCAGTATATA 59.183 38.462 0.00 0.00 36.24 0.86
4100 4461 9.811995 GTGTGTTTGTTCAGTATATAGTCCATA 57.188 33.333 0.00 0.00 0.00 2.74
4101 4462 9.811995 TGTGTTTGTTCAGTATATAGTCCATAC 57.188 33.333 0.00 0.00 0.00 2.39
4119 4480 9.838339 AGTCCATACTGAAATATCCAAAAGTAG 57.162 33.333 0.00 0.00 33.57 2.57
4130 4520 4.079980 TCCAAAAGTAGTTAGCACTGCA 57.920 40.909 3.30 0.00 38.07 4.41
4138 4528 2.498167 AGTTAGCACTGCAAAGTCCTG 58.502 47.619 3.30 0.00 0.00 3.86
4166 4556 4.378774 CAGGGATTTTTGTTGCACAATGA 58.621 39.130 0.00 0.00 38.00 2.57
4197 4587 3.701664 ACAAGGGGAAAGAATGTGGATC 58.298 45.455 0.00 0.00 0.00 3.36
4206 4596 5.409826 GGAAAGAATGTGGATCGGCTATAAG 59.590 44.000 0.00 0.00 0.00 1.73
4207 4597 5.552870 AAGAATGTGGATCGGCTATAAGT 57.447 39.130 0.00 0.00 0.00 2.24
4211 4601 6.260936 AGAATGTGGATCGGCTATAAGTTTTG 59.739 38.462 0.00 0.00 0.00 2.44
4212 4602 3.625764 TGTGGATCGGCTATAAGTTTTGC 59.374 43.478 0.00 0.00 0.00 3.68
4213 4603 3.877508 GTGGATCGGCTATAAGTTTTGCT 59.122 43.478 0.00 0.00 0.00 3.91
4214 4604 4.335594 GTGGATCGGCTATAAGTTTTGCTT 59.664 41.667 0.00 0.00 41.05 3.91
4215 4605 4.335315 TGGATCGGCTATAAGTTTTGCTTG 59.665 41.667 0.00 0.00 38.05 4.01
4216 4606 3.757745 TCGGCTATAAGTTTTGCTTGC 57.242 42.857 0.00 0.00 38.05 4.01
4217 4607 3.078097 TCGGCTATAAGTTTTGCTTGCA 58.922 40.909 0.00 0.00 38.05 4.08
4218 4608 3.504134 TCGGCTATAAGTTTTGCTTGCAA 59.496 39.130 3.70 3.70 38.05 4.08
4219 4609 4.022762 TCGGCTATAAGTTTTGCTTGCAAA 60.023 37.500 15.66 15.66 38.05 3.68
4220 4610 4.089923 CGGCTATAAGTTTTGCTTGCAAAC 59.910 41.667 18.74 13.91 38.05 2.93
4221 4611 4.987912 GGCTATAAGTTTTGCTTGCAAACA 59.012 37.500 18.74 0.00 38.05 2.83
4222 4612 5.465056 GGCTATAAGTTTTGCTTGCAAACAA 59.535 36.000 18.74 11.14 38.05 2.83
4232 4622 2.975732 TTGCAAACAAGGTCAATGCA 57.024 40.000 0.00 0.00 44.54 3.96
4233 4623 2.975732 TGCAAACAAGGTCAATGCAA 57.024 40.000 0.00 0.00 43.39 4.08
4234 4624 2.823984 TGCAAACAAGGTCAATGCAAG 58.176 42.857 0.00 0.00 43.39 4.01
4235 4625 1.528161 GCAAACAAGGTCAATGCAAGC 59.472 47.619 0.00 0.00 37.00 4.01
4236 4626 2.804212 GCAAACAAGGTCAATGCAAGCT 60.804 45.455 0.00 0.00 37.00 3.74
4237 4627 3.460103 CAAACAAGGTCAATGCAAGCTT 58.540 40.909 0.00 0.00 34.94 3.74
4238 4628 3.825143 AACAAGGTCAATGCAAGCTTT 57.175 38.095 0.00 0.00 32.40 3.51
4239 4629 3.825143 ACAAGGTCAATGCAAGCTTTT 57.175 38.095 0.00 0.00 32.40 2.27
4240 4630 3.721035 ACAAGGTCAATGCAAGCTTTTC 58.279 40.909 0.00 0.00 32.40 2.29
4241 4631 3.132646 ACAAGGTCAATGCAAGCTTTTCA 59.867 39.130 0.00 0.00 32.40 2.69
4242 4632 4.121317 CAAGGTCAATGCAAGCTTTTCAA 58.879 39.130 0.00 0.00 32.40 2.69
4243 4633 3.986277 AGGTCAATGCAAGCTTTTCAAG 58.014 40.909 0.00 0.00 0.00 3.02
4244 4634 3.385755 AGGTCAATGCAAGCTTTTCAAGT 59.614 39.130 0.00 0.00 0.00 3.16
4245 4635 4.122046 GGTCAATGCAAGCTTTTCAAGTT 58.878 39.130 0.00 0.00 0.00 2.66
4246 4636 4.571984 GGTCAATGCAAGCTTTTCAAGTTT 59.428 37.500 0.00 0.00 31.70 2.66
4247 4637 5.065090 GGTCAATGCAAGCTTTTCAAGTTTT 59.935 36.000 0.00 0.00 28.82 2.43
4248 4638 6.257630 GGTCAATGCAAGCTTTTCAAGTTTTA 59.742 34.615 0.00 0.00 28.82 1.52
4249 4639 7.041848 GGTCAATGCAAGCTTTTCAAGTTTTAT 60.042 33.333 0.00 0.00 28.82 1.40
4250 4640 7.795272 GTCAATGCAAGCTTTTCAAGTTTTATG 59.205 33.333 0.00 0.00 28.82 1.90
4251 4641 5.655893 TGCAAGCTTTTCAAGTTTTATGC 57.344 34.783 0.00 0.00 28.82 3.14
4252 4642 4.511082 TGCAAGCTTTTCAAGTTTTATGCC 59.489 37.500 0.00 0.00 28.82 4.40
4253 4643 4.376311 GCAAGCTTTTCAAGTTTTATGCCG 60.376 41.667 0.00 0.00 28.82 5.69
4254 4644 3.317150 AGCTTTTCAAGTTTTATGCCGC 58.683 40.909 0.00 0.00 0.00 6.53
4255 4645 2.411748 GCTTTTCAAGTTTTATGCCGCC 59.588 45.455 0.00 0.00 0.00 6.13
4256 4646 2.339728 TTTCAAGTTTTATGCCGCCG 57.660 45.000 0.00 0.00 0.00 6.46
4257 4647 1.240256 TTCAAGTTTTATGCCGCCGT 58.760 45.000 0.00 0.00 0.00 5.68
4258 4648 0.519519 TCAAGTTTTATGCCGCCGTG 59.480 50.000 0.00 0.00 0.00 4.94
4259 4649 0.455972 CAAGTTTTATGCCGCCGTGG 60.456 55.000 0.00 0.00 42.50 4.94
4260 4650 0.891904 AAGTTTTATGCCGCCGTGGT 60.892 50.000 0.00 0.00 41.21 4.16
4261 4651 0.036199 AGTTTTATGCCGCCGTGGTA 60.036 50.000 0.00 0.00 41.21 3.25
4262 4652 0.375803 GTTTTATGCCGCCGTGGTAG 59.624 55.000 0.00 0.00 41.21 3.18
4263 4653 0.745128 TTTTATGCCGCCGTGGTAGG 60.745 55.000 0.00 0.00 41.21 3.18
4264 4654 1.615165 TTTATGCCGCCGTGGTAGGA 61.615 55.000 0.00 0.00 41.21 2.94
4265 4655 2.300850 TTATGCCGCCGTGGTAGGAC 62.301 60.000 0.00 0.37 41.21 3.85
4267 4657 3.142838 GCCGCCGTGGTAGGACTA 61.143 66.667 0.00 0.00 41.21 2.59
4268 4658 2.803479 CCGCCGTGGTAGGACTAC 59.197 66.667 0.84 0.84 35.40 2.73
4269 4659 2.048023 CCGCCGTGGTAGGACTACA 61.048 63.158 11.25 0.00 37.78 2.74
4270 4660 1.389609 CCGCCGTGGTAGGACTACAT 61.390 60.000 11.25 0.00 37.78 2.29
4271 4661 0.458669 CGCCGTGGTAGGACTACATT 59.541 55.000 11.25 0.00 37.78 2.71
4272 4662 1.535437 CGCCGTGGTAGGACTACATTC 60.535 57.143 11.25 1.14 37.78 2.67
4273 4663 1.755380 GCCGTGGTAGGACTACATTCT 59.245 52.381 11.25 0.00 37.78 2.40
4274 4664 2.223758 GCCGTGGTAGGACTACATTCTC 60.224 54.545 11.25 0.00 37.78 2.87
4275 4665 3.288964 CCGTGGTAGGACTACATTCTCT 58.711 50.000 11.25 0.00 37.78 3.10
4276 4666 3.066900 CCGTGGTAGGACTACATTCTCTG 59.933 52.174 11.25 0.00 37.78 3.35
4277 4667 3.066900 CGTGGTAGGACTACATTCTCTGG 59.933 52.174 11.25 0.00 37.78 3.86
4278 4668 4.279145 GTGGTAGGACTACATTCTCTGGA 58.721 47.826 11.25 0.00 37.78 3.86
4279 4669 4.710375 GTGGTAGGACTACATTCTCTGGAA 59.290 45.833 11.25 0.00 37.78 3.53
4280 4670 5.364157 GTGGTAGGACTACATTCTCTGGAAT 59.636 44.000 11.25 0.00 42.29 3.01
4281 4671 5.964477 TGGTAGGACTACATTCTCTGGAATT 59.036 40.000 11.25 0.00 39.87 2.17
4282 4672 6.098409 TGGTAGGACTACATTCTCTGGAATTC 59.902 42.308 11.25 0.00 39.87 2.17
4283 4673 6.098409 GGTAGGACTACATTCTCTGGAATTCA 59.902 42.308 7.93 0.00 39.87 2.57
4284 4674 6.627087 AGGACTACATTCTCTGGAATTCAA 57.373 37.500 7.93 0.00 39.87 2.69
4285 4675 7.205515 AGGACTACATTCTCTGGAATTCAAT 57.794 36.000 7.93 0.00 39.87 2.57
4286 4676 7.278875 AGGACTACATTCTCTGGAATTCAATC 58.721 38.462 7.93 0.00 39.87 2.67
4287 4677 7.127032 AGGACTACATTCTCTGGAATTCAATCT 59.873 37.037 7.93 0.00 39.87 2.40
4288 4678 8.424918 GGACTACATTCTCTGGAATTCAATCTA 58.575 37.037 7.93 0.00 39.87 1.98
4289 4679 9.255304 GACTACATTCTCTGGAATTCAATCTAC 57.745 37.037 7.93 0.00 39.87 2.59
4290 4680 8.762645 ACTACATTCTCTGGAATTCAATCTACA 58.237 33.333 7.93 0.00 39.87 2.74
4291 4681 9.775854 CTACATTCTCTGGAATTCAATCTACAT 57.224 33.333 7.93 0.00 39.87 2.29
4296 4686 9.993454 TTCTCTGGAATTCAATCTACATATCAG 57.007 33.333 7.93 1.08 0.00 2.90
4297 4687 9.372189 TCTCTGGAATTCAATCTACATATCAGA 57.628 33.333 7.93 5.31 0.00 3.27
4298 4688 9.421806 CTCTGGAATTCAATCTACATATCAGAC 57.578 37.037 7.93 0.00 0.00 3.51
4299 4689 9.152327 TCTGGAATTCAATCTACATATCAGACT 57.848 33.333 7.93 0.00 0.00 3.24
4300 4690 9.421806 CTGGAATTCAATCTACATATCAGACTC 57.578 37.037 7.93 0.00 0.00 3.36
4301 4691 8.084684 TGGAATTCAATCTACATATCAGACTCG 58.915 37.037 7.93 0.00 0.00 4.18
4302 4692 8.300286 GGAATTCAATCTACATATCAGACTCGA 58.700 37.037 7.93 0.00 0.00 4.04
4303 4693 9.123709 GAATTCAATCTACATATCAGACTCGAC 57.876 37.037 0.00 0.00 0.00 4.20
4304 4694 6.561737 TCAATCTACATATCAGACTCGACC 57.438 41.667 0.00 0.00 0.00 4.79
4305 4695 6.299922 TCAATCTACATATCAGACTCGACCT 58.700 40.000 0.00 0.00 0.00 3.85
4306 4696 6.773200 TCAATCTACATATCAGACTCGACCTT 59.227 38.462 0.00 0.00 0.00 3.50
4307 4697 7.285629 TCAATCTACATATCAGACTCGACCTTT 59.714 37.037 0.00 0.00 0.00 3.11
4308 4698 8.568794 CAATCTACATATCAGACTCGACCTTTA 58.431 37.037 0.00 0.00 0.00 1.85
4309 4699 8.871629 ATCTACATATCAGACTCGACCTTTAT 57.128 34.615 0.00 0.00 0.00 1.40
4310 4700 8.325421 TCTACATATCAGACTCGACCTTTATC 57.675 38.462 0.00 0.00 0.00 1.75
4311 4701 8.158132 TCTACATATCAGACTCGACCTTTATCT 58.842 37.037 0.00 0.00 0.00 1.98
4312 4702 9.438228 CTACATATCAGACTCGACCTTTATCTA 57.562 37.037 0.00 0.00 0.00 1.98
4313 4703 8.871629 ACATATCAGACTCGACCTTTATCTAT 57.128 34.615 0.00 0.00 0.00 1.98
4314 4704 9.303116 ACATATCAGACTCGACCTTTATCTATT 57.697 33.333 0.00 0.00 0.00 1.73
4315 4705 9.781834 CATATCAGACTCGACCTTTATCTATTC 57.218 37.037 0.00 0.00 0.00 1.75
4316 4706 6.636562 TCAGACTCGACCTTTATCTATTCC 57.363 41.667 0.00 0.00 0.00 3.01
4317 4707 5.535406 TCAGACTCGACCTTTATCTATTCCC 59.465 44.000 0.00 0.00 0.00 3.97
4318 4708 5.302059 CAGACTCGACCTTTATCTATTCCCA 59.698 44.000 0.00 0.00 0.00 4.37
4319 4709 5.897824 AGACTCGACCTTTATCTATTCCCAA 59.102 40.000 0.00 0.00 0.00 4.12
4320 4710 6.041069 AGACTCGACCTTTATCTATTCCCAAG 59.959 42.308 0.00 0.00 0.00 3.61
4321 4711 5.070580 ACTCGACCTTTATCTATTCCCAAGG 59.929 44.000 0.00 0.00 40.05 3.61
4322 4712 4.347000 TCGACCTTTATCTATTCCCAAGGG 59.653 45.833 0.00 0.00 38.72 3.95
4323 4713 4.102681 CGACCTTTATCTATTCCCAAGGGT 59.897 45.833 4.80 0.00 38.72 4.34
4324 4714 5.377478 GACCTTTATCTATTCCCAAGGGTG 58.623 45.833 4.80 0.00 38.72 4.61
4325 4715 4.145052 CCTTTATCTATTCCCAAGGGTGC 58.855 47.826 4.80 0.00 36.47 5.01
4326 4716 4.141158 CCTTTATCTATTCCCAAGGGTGCT 60.141 45.833 4.80 0.00 36.47 4.40
4327 4717 5.449553 CTTTATCTATTCCCAAGGGTGCTT 58.550 41.667 4.80 0.00 36.47 3.91
4328 4718 2.806945 TCTATTCCCAAGGGTGCTTG 57.193 50.000 4.80 0.00 36.47 4.01
4333 4723 3.053828 CCAAGGGTGCTTGGCAAG 58.946 61.111 22.75 22.75 45.98 4.01
4334 4724 1.531365 CCAAGGGTGCTTGGCAAGA 60.531 57.895 30.45 12.81 45.98 3.02
4335 4725 0.901580 CCAAGGGTGCTTGGCAAGAT 60.902 55.000 30.45 7.40 45.98 2.40
4336 4726 0.245539 CAAGGGTGCTTGGCAAGATG 59.754 55.000 30.45 13.68 41.47 2.90
4337 4727 0.178953 AAGGGTGCTTGGCAAGATGT 60.179 50.000 30.45 6.80 41.47 3.06
4338 4728 0.610232 AGGGTGCTTGGCAAGATGTC 60.610 55.000 30.45 15.51 41.47 3.06
4339 4729 0.895100 GGGTGCTTGGCAAGATGTCA 60.895 55.000 30.45 15.57 41.47 3.58
4340 4730 0.242017 GGTGCTTGGCAAGATGTCAC 59.758 55.000 30.45 24.69 41.47 3.67
4341 4731 0.242017 GTGCTTGGCAAGATGTCACC 59.758 55.000 30.45 11.26 41.47 4.02
4342 4732 0.178995 TGCTTGGCAAGATGTCACCA 60.179 50.000 30.45 13.76 34.76 4.17
4343 4733 1.180029 GCTTGGCAAGATGTCACCAT 58.820 50.000 30.45 0.00 28.02 3.55
4344 4734 1.135199 GCTTGGCAAGATGTCACCATG 60.135 52.381 30.45 0.68 28.02 3.66
4345 4735 0.889994 TTGGCAAGATGTCACCATGC 59.110 50.000 0.00 0.00 28.02 4.06
4346 4736 0.251253 TGGCAAGATGTCACCATGCA 60.251 50.000 0.00 0.00 38.73 3.96
4347 4737 0.171903 GGCAAGATGTCACCATGCAC 59.828 55.000 0.00 0.00 38.73 4.57
4348 4738 1.171308 GCAAGATGTCACCATGCACT 58.829 50.000 0.00 0.00 37.00 4.40
4349 4739 1.542915 GCAAGATGTCACCATGCACTT 59.457 47.619 0.00 0.00 37.00 3.16
4350 4740 2.415090 GCAAGATGTCACCATGCACTTC 60.415 50.000 0.00 0.00 37.00 3.01
4351 4741 1.730501 AGATGTCACCATGCACTTCG 58.269 50.000 0.00 0.00 0.00 3.79
4352 4742 1.002430 AGATGTCACCATGCACTTCGT 59.998 47.619 0.00 0.00 0.00 3.85
4353 4743 1.806542 GATGTCACCATGCACTTCGTT 59.193 47.619 0.00 0.00 0.00 3.85
4354 4744 0.943673 TGTCACCATGCACTTCGTTG 59.056 50.000 0.00 0.00 0.00 4.10
4355 4745 1.225855 GTCACCATGCACTTCGTTGA 58.774 50.000 0.00 0.00 0.00 3.18
4356 4746 1.195448 GTCACCATGCACTTCGTTGAG 59.805 52.381 0.00 0.00 0.00 3.02
4357 4747 0.518636 CACCATGCACTTCGTTGAGG 59.481 55.000 0.00 0.00 0.00 3.86
4358 4748 0.606401 ACCATGCACTTCGTTGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
4359 4749 1.308069 CCATGCACTTCGTTGAGGGG 61.308 60.000 0.00 0.00 0.00 4.79
4360 4750 0.606401 CATGCACTTCGTTGAGGGGT 60.606 55.000 0.00 0.00 0.00 4.95
4361 4751 0.110486 ATGCACTTCGTTGAGGGGTT 59.890 50.000 0.00 0.00 0.00 4.11
4362 4752 0.817634 TGCACTTCGTTGAGGGGTTG 60.818 55.000 0.00 0.00 0.00 3.77
4363 4753 1.949257 CACTTCGTTGAGGGGTTGC 59.051 57.895 0.00 0.00 0.00 4.17
4364 4754 1.228154 ACTTCGTTGAGGGGTTGCC 60.228 57.895 0.00 0.00 0.00 4.52
4365 4755 1.228124 CTTCGTTGAGGGGTTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
4366 4756 0.609131 CTTCGTTGAGGGGTTGCCAT 60.609 55.000 0.00 0.00 0.00 4.40
4367 4757 0.608035 TTCGTTGAGGGGTTGCCATC 60.608 55.000 0.00 0.00 0.00 3.51
4368 4758 1.002134 CGTTGAGGGGTTGCCATCT 60.002 57.895 0.00 0.00 0.00 2.90
4369 4759 0.609131 CGTTGAGGGGTTGCCATCTT 60.609 55.000 0.00 0.00 0.00 2.40
4370 4760 1.177401 GTTGAGGGGTTGCCATCTTC 58.823 55.000 0.00 0.00 0.00 2.87
4371 4761 0.039618 TTGAGGGGTTGCCATCTTCC 59.960 55.000 0.00 0.00 0.00 3.46
4372 4762 0.846427 TGAGGGGTTGCCATCTTCCT 60.846 55.000 0.00 0.00 0.00 3.36
4373 4763 0.106967 GAGGGGTTGCCATCTTCCTC 60.107 60.000 0.00 0.00 34.78 3.71
4374 4764 0.846427 AGGGGTTGCCATCTTCCTCA 60.846 55.000 0.00 0.00 0.00 3.86
4375 4765 0.681243 GGGGTTGCCATCTTCCTCAC 60.681 60.000 0.00 0.00 0.00 3.51
4376 4766 0.038166 GGGTTGCCATCTTCCTCACA 59.962 55.000 0.00 0.00 0.00 3.58
4377 4767 1.457346 GGTTGCCATCTTCCTCACAG 58.543 55.000 0.00 0.00 0.00 3.66
4378 4768 1.271597 GGTTGCCATCTTCCTCACAGT 60.272 52.381 0.00 0.00 0.00 3.55
4379 4769 2.508526 GTTGCCATCTTCCTCACAGTT 58.491 47.619 0.00 0.00 0.00 3.16
4380 4770 3.559171 GGTTGCCATCTTCCTCACAGTTA 60.559 47.826 0.00 0.00 0.00 2.24
4381 4771 4.265073 GTTGCCATCTTCCTCACAGTTAT 58.735 43.478 0.00 0.00 0.00 1.89
4382 4772 4.574674 TGCCATCTTCCTCACAGTTATT 57.425 40.909 0.00 0.00 0.00 1.40
4383 4773 4.517285 TGCCATCTTCCTCACAGTTATTC 58.483 43.478 0.00 0.00 0.00 1.75
4384 4774 4.225942 TGCCATCTTCCTCACAGTTATTCT 59.774 41.667 0.00 0.00 0.00 2.40
4398 4788 5.547465 CAGTTATTCTGGTGGTAGTTGACA 58.453 41.667 0.00 0.00 40.23 3.58
4399 4789 5.639506 CAGTTATTCTGGTGGTAGTTGACAG 59.360 44.000 0.00 0.00 40.23 3.51
4400 4790 5.542635 AGTTATTCTGGTGGTAGTTGACAGA 59.457 40.000 0.00 0.00 36.49 3.41
4401 4791 6.213600 AGTTATTCTGGTGGTAGTTGACAGAT 59.786 38.462 0.00 0.00 37.93 2.90
4402 4792 7.399191 AGTTATTCTGGTGGTAGTTGACAGATA 59.601 37.037 0.00 0.00 37.93 1.98
4403 4793 6.814954 ATTCTGGTGGTAGTTGACAGATAT 57.185 37.500 0.00 0.00 37.93 1.63
4404 4794 7.914427 ATTCTGGTGGTAGTTGACAGATATA 57.086 36.000 0.00 0.00 37.93 0.86
4405 4795 6.710597 TCTGGTGGTAGTTGACAGATATAC 57.289 41.667 0.00 0.00 33.62 1.47
4406 4796 6.192044 TCTGGTGGTAGTTGACAGATATACA 58.808 40.000 0.00 0.00 33.62 2.29
4407 4797 6.666113 TCTGGTGGTAGTTGACAGATATACAA 59.334 38.462 0.00 0.00 33.62 2.41
4408 4798 7.344612 TCTGGTGGTAGTTGACAGATATACAAT 59.655 37.037 0.00 0.00 33.62 2.71
4409 4799 7.272244 TGGTGGTAGTTGACAGATATACAATG 58.728 38.462 0.00 0.00 0.00 2.82
4410 4800 7.093068 TGGTGGTAGTTGACAGATATACAATGT 60.093 37.037 0.00 0.00 0.00 2.71
4411 4801 8.418662 GGTGGTAGTTGACAGATATACAATGTA 58.581 37.037 0.00 0.00 0.00 2.29
4412 4802 9.982651 GTGGTAGTTGACAGATATACAATGTAT 57.017 33.333 10.98 10.98 0.00 2.29
4413 4803 9.981114 TGGTAGTTGACAGATATACAATGTATG 57.019 33.333 15.57 3.38 0.00 2.39
4414 4804 8.926710 GGTAGTTGACAGATATACAATGTATGC 58.073 37.037 15.57 7.85 0.00 3.14
4415 4805 9.476202 GTAGTTGACAGATATACAATGTATGCA 57.524 33.333 15.57 0.00 0.00 3.96
4416 4806 8.370493 AGTTGACAGATATACAATGTATGCAC 57.630 34.615 15.57 7.06 0.00 4.57
4417 4807 7.986889 AGTTGACAGATATACAATGTATGCACA 59.013 33.333 15.57 5.20 39.52 4.57
4474 4865 4.280677 TGTTGCCAAACTTTTCCTGGATAG 59.719 41.667 0.00 0.78 37.19 2.08
4483 4874 2.464796 TTCCTGGATAGCGTAGGGAA 57.535 50.000 0.00 0.00 32.39 3.97
4488 4879 2.036089 CTGGATAGCGTAGGGAAACTCC 59.964 54.545 0.00 0.00 35.23 3.85
4489 4880 2.037144 GGATAGCGTAGGGAAACTCCA 58.963 52.381 0.00 0.00 38.64 3.86
4490 4881 2.633481 GGATAGCGTAGGGAAACTCCAT 59.367 50.000 0.00 0.00 38.64 3.41
4492 4883 0.541863 AGCGTAGGGAAACTCCATGG 59.458 55.000 4.97 4.97 38.64 3.66
4493 4884 1.095807 GCGTAGGGAAACTCCATGGC 61.096 60.000 6.96 0.00 38.64 4.40
4494 4885 0.810031 CGTAGGGAAACTCCATGGCG 60.810 60.000 6.96 2.63 38.64 5.69
4551 4942 0.963962 CAAAGTGCATTCTGGCAGGT 59.036 50.000 15.73 0.58 45.96 4.00
4552 4943 1.342174 CAAAGTGCATTCTGGCAGGTT 59.658 47.619 15.73 0.00 45.96 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.681025 TCGCTGCAAAACATTGAGAAAATC 59.319 37.500 0.00 0.00 0.00 2.17
1 2 4.619973 TCGCTGCAAAACATTGAGAAAAT 58.380 34.783 0.00 0.00 0.00 1.82
2 3 4.039151 TCGCTGCAAAACATTGAGAAAA 57.961 36.364 0.00 0.00 0.00 2.29
3 4 3.631144 CTCGCTGCAAAACATTGAGAAA 58.369 40.909 0.00 0.00 33.42 2.52
4 5 2.605338 GCTCGCTGCAAAACATTGAGAA 60.605 45.455 0.00 0.00 42.31 2.87
5 6 1.069022 GCTCGCTGCAAAACATTGAGA 60.069 47.619 0.00 0.00 42.31 3.27
6 7 1.334054 GCTCGCTGCAAAACATTGAG 58.666 50.000 0.00 0.00 42.31 3.02
7 8 3.477504 GCTCGCTGCAAAACATTGA 57.522 47.368 0.00 0.00 42.31 2.57
17 18 7.858052 ACAATAAATATTTAATGCTCGCTGC 57.142 32.000 18.95 0.00 43.25 5.25
32 33 9.358406 TGTCCGGAGAGAGTATAACAATAAATA 57.642 33.333 3.06 0.00 0.00 1.40
33 34 8.246430 TGTCCGGAGAGAGTATAACAATAAAT 57.754 34.615 3.06 0.00 0.00 1.40
34 35 7.649533 TGTCCGGAGAGAGTATAACAATAAA 57.350 36.000 3.06 0.00 0.00 1.40
35 36 7.834881 ATGTCCGGAGAGAGTATAACAATAA 57.165 36.000 3.06 0.00 0.00 1.40
36 37 7.834881 AATGTCCGGAGAGAGTATAACAATA 57.165 36.000 3.06 0.00 0.00 1.90
37 38 6.732896 AATGTCCGGAGAGAGTATAACAAT 57.267 37.500 3.06 0.00 0.00 2.71
38 39 6.540438 AAATGTCCGGAGAGAGTATAACAA 57.460 37.500 3.06 0.00 0.00 2.83
39 40 6.540438 AAAATGTCCGGAGAGAGTATAACA 57.460 37.500 3.06 0.00 0.00 2.41
40 41 7.714703 ACTAAAATGTCCGGAGAGAGTATAAC 58.285 38.462 3.06 0.00 0.00 1.89
41 42 7.893124 ACTAAAATGTCCGGAGAGAGTATAA 57.107 36.000 3.06 0.00 0.00 0.98
42 43 7.558807 TGAACTAAAATGTCCGGAGAGAGTATA 59.441 37.037 3.06 0.00 0.00 1.47
43 44 6.380274 TGAACTAAAATGTCCGGAGAGAGTAT 59.620 38.462 3.06 0.00 0.00 2.12
44 45 5.713389 TGAACTAAAATGTCCGGAGAGAGTA 59.287 40.000 3.06 0.00 0.00 2.59
45 46 4.527038 TGAACTAAAATGTCCGGAGAGAGT 59.473 41.667 3.06 3.23 0.00 3.24
46 47 4.865365 GTGAACTAAAATGTCCGGAGAGAG 59.135 45.833 3.06 2.52 0.00 3.20
47 48 4.282449 TGTGAACTAAAATGTCCGGAGAGA 59.718 41.667 3.06 0.00 0.00 3.10
48 49 4.566004 TGTGAACTAAAATGTCCGGAGAG 58.434 43.478 3.06 0.00 0.00 3.20
49 50 4.610605 TGTGAACTAAAATGTCCGGAGA 57.389 40.909 3.06 2.85 0.00 3.71
50 51 8.657074 TTATATGTGAACTAAAATGTCCGGAG 57.343 34.615 3.06 0.00 0.00 4.63
51 52 8.479689 TCTTATATGTGAACTAAAATGTCCGGA 58.520 33.333 0.00 0.00 0.00 5.14
52 53 8.657074 TCTTATATGTGAACTAAAATGTCCGG 57.343 34.615 0.00 0.00 0.00 5.14
84 85 9.974980 GGTTAAAGTTTATGAGGTTTGATTTCA 57.025 29.630 0.00 0.00 0.00 2.69
85 86 9.974980 TGGTTAAAGTTTATGAGGTTTGATTTC 57.025 29.630 0.00 0.00 0.00 2.17
87 88 9.981114 CTTGGTTAAAGTTTATGAGGTTTGATT 57.019 29.630 0.00 0.00 0.00 2.57
125 126 9.388506 TGATTTCACATTTTAAATGTTGGTGTT 57.611 25.926 19.27 4.48 0.00 3.32
126 127 8.954950 TGATTTCACATTTTAAATGTTGGTGT 57.045 26.923 19.27 6.43 0.00 4.16
127 128 9.649024 GTTGATTTCACATTTTAAATGTTGGTG 57.351 29.630 19.27 9.56 0.00 4.17
128 129 9.388506 TGTTGATTTCACATTTTAAATGTTGGT 57.611 25.926 19.27 7.36 0.00 3.67
139 140 8.928733 GCATCTAATGTTGTTGATTTCACATTT 58.071 29.630 1.97 0.00 0.00 2.32
140 141 7.274033 CGCATCTAATGTTGTTGATTTCACATT 59.726 33.333 0.00 0.00 0.00 2.71
141 142 6.748658 CGCATCTAATGTTGTTGATTTCACAT 59.251 34.615 0.00 0.00 0.00 3.21
142 143 6.085573 CGCATCTAATGTTGTTGATTTCACA 58.914 36.000 0.00 0.00 0.00 3.58
143 144 6.086222 ACGCATCTAATGTTGTTGATTTCAC 58.914 36.000 0.00 0.00 0.00 3.18
144 145 6.072783 TGACGCATCTAATGTTGTTGATTTCA 60.073 34.615 0.00 0.00 0.00 2.69
145 146 6.314018 TGACGCATCTAATGTTGTTGATTTC 58.686 36.000 0.00 0.00 0.00 2.17
146 147 6.252967 TGACGCATCTAATGTTGTTGATTT 57.747 33.333 0.00 0.00 0.00 2.17
147 148 5.878332 TGACGCATCTAATGTTGTTGATT 57.122 34.783 0.00 0.00 0.00 2.57
148 149 5.585844 TCATGACGCATCTAATGTTGTTGAT 59.414 36.000 0.00 0.00 0.00 2.57
149 150 4.934602 TCATGACGCATCTAATGTTGTTGA 59.065 37.500 0.00 0.00 0.00 3.18
150 151 5.023920 GTCATGACGCATCTAATGTTGTTG 58.976 41.667 10.69 0.00 0.00 3.33
151 152 4.937620 AGTCATGACGCATCTAATGTTGTT 59.062 37.500 19.85 0.00 36.20 2.83
152 153 4.507710 AGTCATGACGCATCTAATGTTGT 58.492 39.130 19.85 0.00 36.20 3.32
153 154 5.475273 AAGTCATGACGCATCTAATGTTG 57.525 39.130 19.85 0.00 36.20 3.33
154 155 6.818644 ACTAAAGTCATGACGCATCTAATGTT 59.181 34.615 19.85 2.19 36.20 2.71
155 156 6.341316 ACTAAAGTCATGACGCATCTAATGT 58.659 36.000 19.85 7.94 36.20 2.71
156 157 6.834959 ACTAAAGTCATGACGCATCTAATG 57.165 37.500 19.85 7.39 36.20 1.90
157 158 7.849804 AAACTAAAGTCATGACGCATCTAAT 57.150 32.000 19.85 2.37 36.20 1.73
158 159 7.386573 TGAAAACTAAAGTCATGACGCATCTAA 59.613 33.333 19.85 2.63 36.20 2.10
159 160 6.871492 TGAAAACTAAAGTCATGACGCATCTA 59.129 34.615 19.85 7.52 36.20 1.98
160 161 5.700832 TGAAAACTAAAGTCATGACGCATCT 59.299 36.000 19.85 6.79 36.20 2.90
161 162 5.927030 TGAAAACTAAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
162 163 5.940192 TGAAAACTAAAGTCATGACGCAT 57.060 34.783 19.85 12.36 36.20 4.73
163 164 5.940192 ATGAAAACTAAAGTCATGACGCA 57.060 34.783 19.85 8.35 36.20 5.24
164 165 7.962918 ACAATATGAAAACTAAAGTCATGACGC 59.037 33.333 19.85 0.00 34.01 5.19
234 235 9.505995 GAAGTCAAACTTCGTAAAATTTTACCA 57.494 29.630 27.35 17.28 44.22 3.25
283 284 4.569719 ATGTACTCCATCCGGTCTTTTT 57.430 40.909 0.00 0.00 0.00 1.94
284 285 5.687166 TTATGTACTCCATCCGGTCTTTT 57.313 39.130 0.00 0.00 34.86 2.27
285 286 5.687166 TTTATGTACTCCATCCGGTCTTT 57.313 39.130 0.00 0.00 34.86 2.52
286 287 5.687166 TTTTATGTACTCCATCCGGTCTT 57.313 39.130 0.00 0.00 34.86 3.01
287 288 5.687166 TTTTTATGTACTCCATCCGGTCT 57.313 39.130 0.00 0.00 34.86 3.85
336 337 3.157881 TGATACATGTTCCCCGCAAAAA 58.842 40.909 2.30 0.00 0.00 1.94
337 338 2.796557 TGATACATGTTCCCCGCAAAA 58.203 42.857 2.30 0.00 0.00 2.44
338 339 2.498644 TGATACATGTTCCCCGCAAA 57.501 45.000 2.30 0.00 0.00 3.68
339 340 2.727123 ATGATACATGTTCCCCGCAA 57.273 45.000 2.30 0.00 0.00 4.85
340 341 2.727123 AATGATACATGTTCCCCGCA 57.273 45.000 2.30 0.00 0.00 5.69
341 342 4.518970 ACAATAATGATACATGTTCCCCGC 59.481 41.667 2.30 0.00 0.00 6.13
342 343 6.437928 CAACAATAATGATACATGTTCCCCG 58.562 40.000 2.30 0.00 32.25 5.73
343 344 6.215845 GCAACAATAATGATACATGTTCCCC 58.784 40.000 2.30 0.00 32.25 4.81
344 345 5.914635 CGCAACAATAATGATACATGTTCCC 59.085 40.000 2.30 0.00 32.25 3.97
345 346 5.399301 GCGCAACAATAATGATACATGTTCC 59.601 40.000 2.30 0.00 32.25 3.62
346 347 5.113975 CGCGCAACAATAATGATACATGTTC 59.886 40.000 8.75 2.28 32.25 3.18
347 348 4.969395 CGCGCAACAATAATGATACATGTT 59.031 37.500 8.75 0.00 34.74 2.71
348 349 4.526625 CGCGCAACAATAATGATACATGT 58.473 39.130 8.75 2.69 0.00 3.21
349 350 3.907788 CCGCGCAACAATAATGATACATG 59.092 43.478 8.75 0.00 0.00 3.21
350 351 3.563808 ACCGCGCAACAATAATGATACAT 59.436 39.130 8.75 0.00 0.00 2.29
351 352 2.939756 ACCGCGCAACAATAATGATACA 59.060 40.909 8.75 0.00 0.00 2.29
352 353 3.602390 ACCGCGCAACAATAATGATAC 57.398 42.857 8.75 0.00 0.00 2.24
353 354 4.142578 ACAAACCGCGCAACAATAATGATA 60.143 37.500 8.75 0.00 0.00 2.15
354 355 3.178267 CAAACCGCGCAACAATAATGAT 58.822 40.909 8.75 0.00 0.00 2.45
355 356 2.030717 ACAAACCGCGCAACAATAATGA 60.031 40.909 8.75 0.00 0.00 2.57
356 357 2.090349 CACAAACCGCGCAACAATAATG 59.910 45.455 8.75 0.00 0.00 1.90
357 358 2.030717 TCACAAACCGCGCAACAATAAT 60.031 40.909 8.75 0.00 0.00 1.28
358 359 1.333931 TCACAAACCGCGCAACAATAA 59.666 42.857 8.75 0.00 0.00 1.40
359 360 0.945099 TCACAAACCGCGCAACAATA 59.055 45.000 8.75 0.00 0.00 1.90
360 361 0.317770 CTCACAAACCGCGCAACAAT 60.318 50.000 8.75 0.00 0.00 2.71
361 362 1.063327 CTCACAAACCGCGCAACAA 59.937 52.632 8.75 0.00 0.00 2.83
362 363 2.712539 CTCACAAACCGCGCAACA 59.287 55.556 8.75 0.00 0.00 3.33
363 364 2.051345 CCTCACAAACCGCGCAAC 60.051 61.111 8.75 0.00 0.00 4.17
364 365 1.377366 TTTCCTCACAAACCGCGCAA 61.377 50.000 8.75 0.00 0.00 4.85
365 366 1.377366 TTTTCCTCACAAACCGCGCA 61.377 50.000 8.75 0.00 0.00 6.09
366 367 0.248702 TTTTTCCTCACAAACCGCGC 60.249 50.000 0.00 0.00 0.00 6.86
367 368 2.031157 AGATTTTTCCTCACAAACCGCG 60.031 45.455 0.00 0.00 0.00 6.46
368 369 3.643159 AGATTTTTCCTCACAAACCGC 57.357 42.857 0.00 0.00 0.00 5.68
369 370 5.049954 TCGTAAGATTTTTCCTCACAAACCG 60.050 40.000 0.00 0.00 45.01 4.44
370 371 6.308371 TCGTAAGATTTTTCCTCACAAACC 57.692 37.500 0.00 0.00 45.01 3.27
391 392 4.576843 GCGTATGCAGCATTGTCG 57.423 55.556 14.58 16.32 42.15 4.35
407 408 9.612620 GTGTGTGCTATAATATATTTTTCCTGC 57.387 33.333 2.68 1.86 0.00 4.85
409 410 9.772973 TCGTGTGTGCTATAATATATTTTTCCT 57.227 29.630 2.68 0.00 0.00 3.36
423 424 5.511377 CGCAAAATAAAATCGTGTGTGCTAT 59.489 36.000 0.00 0.00 0.00 2.97
432 433 6.936222 TTATGTTGCGCAAAATAAAATCGT 57.064 29.167 33.36 19.30 29.94 3.73
433 434 7.607880 TGATTATGTTGCGCAAAATAAAATCG 58.392 30.769 36.72 0.00 35.00 3.34
434 435 9.919348 ATTGATTATGTTGCGCAAAATAAAATC 57.081 25.926 36.72 31.70 35.00 2.17
453 454 5.172934 AGTCGACCGCTTAAACATTGATTA 58.827 37.500 13.01 0.00 0.00 1.75
469 470 1.829096 GAGGAGCCCCTAGTCGACC 60.829 68.421 13.01 0.00 44.53 4.79
481 482 3.844090 GACAGGCGGAGGAGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
489 490 2.577059 GAATGTCGGACAGGCGGA 59.423 61.111 16.84 0.00 0.00 5.54
490 491 2.885644 CGAATGTCGGACAGGCGG 60.886 66.667 20.78 7.05 36.00 6.13
491 492 1.874019 CTCGAATGTCGGACAGGCG 60.874 63.158 21.86 21.86 40.88 5.52
492 493 2.167861 GCTCGAATGTCGGACAGGC 61.168 63.158 16.84 9.58 40.88 4.85
502 503 1.737838 TTTAGGCCTGTGCTCGAATG 58.262 50.000 17.99 0.00 37.74 2.67
503 504 2.489938 TTTTAGGCCTGTGCTCGAAT 57.510 45.000 17.99 0.00 37.74 3.34
505 506 2.489938 ATTTTTAGGCCTGTGCTCGA 57.510 45.000 17.99 0.00 37.74 4.04
513 514 6.194235 TCCATGACAATGTATTTTTAGGCCT 58.806 36.000 11.78 11.78 31.27 5.19
534 535 4.397481 TTGTGTGTGCAAATTTCATCCA 57.603 36.364 0.00 0.00 0.00 3.41
590 591 3.785505 GCCGTACATTTGAAGATTGCTCG 60.786 47.826 0.00 0.00 0.00 5.03
591 592 3.375299 AGCCGTACATTTGAAGATTGCTC 59.625 43.478 0.00 0.00 0.00 4.26
622 703 1.103803 TCGTAGAGGTGATGGCAGAC 58.896 55.000 0.00 0.00 0.00 3.51
629 710 4.036498 CGGTTGTAGAATCGTAGAGGTGAT 59.964 45.833 0.00 0.00 43.63 3.06
649 730 2.186903 GATCGTGCCATGGACGGT 59.813 61.111 26.01 22.55 37.43 4.83
775 856 0.251742 TCAGGGGCATTTTGGTCAGG 60.252 55.000 0.00 0.00 0.00 3.86
1036 1121 2.811317 CGGCTCTCTCGCGCTTTT 60.811 61.111 5.56 0.00 0.00 2.27
1313 1398 4.852697 GGGAAAAGGGAGGAGGATGTATAT 59.147 45.833 0.00 0.00 0.00 0.86
1314 1399 4.240323 GGGAAAAGGGAGGAGGATGTATA 58.760 47.826 0.00 0.00 0.00 1.47
1355 1441 4.746611 GTCAAACTTTCAGCCAAATTGGAG 59.253 41.667 17.47 7.39 40.96 3.86
1356 1442 4.692228 GTCAAACTTTCAGCCAAATTGGA 58.308 39.130 17.47 0.00 40.96 3.53
1357 1443 3.490526 CGTCAAACTTTCAGCCAAATTGG 59.509 43.478 7.84 7.84 41.55 3.16
1358 1444 3.060339 GCGTCAAACTTTCAGCCAAATTG 60.060 43.478 0.00 0.00 0.00 2.32
1413 1505 1.380403 CCTCCCAACAAACACACGCA 61.380 55.000 0.00 0.00 0.00 5.24
1414 1506 1.358759 CCTCCCAACAAACACACGC 59.641 57.895 0.00 0.00 0.00 5.34
1415 1507 0.380378 CACCTCCCAACAAACACACG 59.620 55.000 0.00 0.00 0.00 4.49
1416 1508 1.470051 ACACCTCCCAACAAACACAC 58.530 50.000 0.00 0.00 0.00 3.82
1422 1514 2.757868 CAAACTCAACACCTCCCAACAA 59.242 45.455 0.00 0.00 0.00 2.83
1472 1564 4.901849 CCTACTCTCCAGTAATCCCAATCA 59.098 45.833 0.00 0.00 34.53 2.57
1560 1652 1.145759 AACGCATAGATCACACGCCG 61.146 55.000 0.00 0.00 0.00 6.46
1701 1793 5.468746 TCGACTTTGGTTCTGTTTTATCAGG 59.531 40.000 0.00 0.00 36.25 3.86
1703 1795 6.485313 ACATCGACTTTGGTTCTGTTTTATCA 59.515 34.615 0.00 0.00 0.00 2.15
1704 1796 6.899114 ACATCGACTTTGGTTCTGTTTTATC 58.101 36.000 0.00 0.00 0.00 1.75
1705 1797 6.877611 ACATCGACTTTGGTTCTGTTTTAT 57.122 33.333 0.00 0.00 0.00 1.40
1706 1798 6.459024 CCAACATCGACTTTGGTTCTGTTTTA 60.459 38.462 15.80 0.00 37.98 1.52
1719 1819 0.035317 TGCAGCTCCAACATCGACTT 59.965 50.000 0.00 0.00 0.00 3.01
1721 1821 1.939974 TATGCAGCTCCAACATCGAC 58.060 50.000 0.00 0.00 0.00 4.20
1728 1828 2.019249 GCACAAGATATGCAGCTCCAA 58.981 47.619 0.00 0.00 42.88 3.53
1734 1834 1.753930 TGGTGGCACAAGATATGCAG 58.246 50.000 20.82 0.00 45.27 4.41
1742 1843 3.312421 CCGTATTAGAATGGTGGCACAAG 59.688 47.826 20.82 0.00 44.16 3.16
1750 1852 6.887545 TCAAATTGGAACCGTATTAGAATGGT 59.112 34.615 0.00 0.00 40.62 3.55
1814 1916 0.311165 CTAGGTAGATGCACCGACCG 59.689 60.000 4.49 0.00 43.84 4.79
2013 2121 8.985315 TGCTATTGGTAGATTCATGAGAAAAT 57.015 30.769 0.00 0.00 37.29 1.82
2056 2164 4.573607 GCATCAGTACAAGCATCAAGATCA 59.426 41.667 0.00 0.00 0.00 2.92
2057 2165 4.573607 TGCATCAGTACAAGCATCAAGATC 59.426 41.667 0.00 0.00 31.05 2.75
2087 2196 6.206634 CAGAGTAAGACAAACCTTGCCATTAA 59.793 38.462 0.00 0.00 30.48 1.40
2104 2213 6.844696 TCACTGTAAAAGTTGCAGAGTAAG 57.155 37.500 12.22 0.00 44.85 2.34
2217 2326 9.109393 GTTATTAGCAGATGAATTCAGTAACCA 57.891 33.333 14.54 0.00 0.00 3.67
2222 2331 9.624373 ATCAAGTTATTAGCAGATGAATTCAGT 57.376 29.630 14.54 0.58 0.00 3.41
2284 2398 8.575589 TCGAATCTTCCAATTCAGAATTTCAAA 58.424 29.630 5.58 0.89 35.75 2.69
2285 2399 8.023128 GTCGAATCTTCCAATTCAGAATTTCAA 58.977 33.333 5.58 1.56 35.75 2.69
2286 2400 7.174772 TGTCGAATCTTCCAATTCAGAATTTCA 59.825 33.333 5.58 0.00 35.75 2.69
2287 2401 7.530010 TGTCGAATCTTCCAATTCAGAATTTC 58.470 34.615 5.58 0.00 35.75 2.17
2288 2402 7.452880 TGTCGAATCTTCCAATTCAGAATTT 57.547 32.000 5.58 0.00 35.75 1.82
2289 2403 7.636150 ATGTCGAATCTTCCAATTCAGAATT 57.364 32.000 2.20 2.20 35.75 2.17
2290 2404 8.781196 CATATGTCGAATCTTCCAATTCAGAAT 58.219 33.333 0.00 0.00 35.75 2.40
2291 2405 7.986889 TCATATGTCGAATCTTCCAATTCAGAA 59.013 33.333 1.90 0.00 35.75 3.02
2305 2419 9.965824 AAAAGAAAACAAACTCATATGTCGAAT 57.034 25.926 1.90 0.00 0.00 3.34
2872 2992 7.715249 AGAATGCGGACAAATGTACAGTAATAT 59.285 33.333 0.33 0.00 0.00 1.28
2873 2993 7.045416 AGAATGCGGACAAATGTACAGTAATA 58.955 34.615 0.33 0.00 0.00 0.98
2874 2994 5.880332 AGAATGCGGACAAATGTACAGTAAT 59.120 36.000 0.33 0.00 0.00 1.89
2916 3036 2.003301 GAAGGAATTCAGTCGGTCAGC 58.997 52.381 7.93 0.00 0.00 4.26
3080 3200 9.216117 GATGATGATCACATGTTCTGATATTCA 57.784 33.333 13.33 3.97 36.82 2.57
3120 3240 7.004086 AGATTTGTTATTCCTTGGAAGTCACA 58.996 34.615 8.16 7.41 0.00 3.58
3122 3242 6.071952 GCAGATTTGTTATTCCTTGGAAGTCA 60.072 38.462 8.16 4.54 0.00 3.41
3148 3268 3.374988 TGCGATCTCTGCAAATGGTAAAG 59.625 43.478 0.00 0.00 39.87 1.85
3182 3302 2.096013 CAGCTTAGAGACGTCGTCATGA 59.904 50.000 26.17 10.82 34.60 3.07
3301 3438 0.537143 TGCAGGGCGACAAAGATGTT 60.537 50.000 0.00 0.00 40.74 2.71
3315 3452 2.031012 TTGTGGAGCGACTGCAGG 59.969 61.111 19.93 1.57 46.23 4.85
3363 3500 1.947146 CGTTTGTGAGTCGGCGACA 60.947 57.895 37.71 19.00 34.60 4.35
3391 3528 4.574674 ACAAGGTATGCATCCTTTGAGA 57.425 40.909 18.90 0.00 42.57 3.27
3460 3597 4.997395 ACAACGAATGAATAACTCAGCTGT 59.003 37.500 14.67 0.00 37.52 4.40
3475 3612 2.100916 CCTCCTGGTCGATACAACGAAT 59.899 50.000 0.00 0.00 43.75 3.34
3484 3621 3.082579 GCGCTTCCTCCTGGTCGAT 62.083 63.158 0.00 0.00 34.23 3.59
3490 3627 2.186384 CTCCAGCGCTTCCTCCTG 59.814 66.667 7.50 0.00 0.00 3.86
3501 3638 5.751243 TTACAAAGAAAAGACACTCCAGC 57.249 39.130 0.00 0.00 0.00 4.85
3502 3639 5.529060 AGCTTACAAAGAAAAGACACTCCAG 59.471 40.000 0.00 0.00 0.00 3.86
3503 3640 5.296780 CAGCTTACAAAGAAAAGACACTCCA 59.703 40.000 0.00 0.00 0.00 3.86
3504 3641 5.297029 ACAGCTTACAAAGAAAAGACACTCC 59.703 40.000 0.00 0.00 0.00 3.85
3506 3643 7.859325 TTACAGCTTACAAAGAAAAGACACT 57.141 32.000 0.00 0.00 0.00 3.55
3507 3644 8.905103 TTTTACAGCTTACAAAGAAAAGACAC 57.095 30.769 0.00 0.00 0.00 3.67
3509 3646 8.968242 CCATTTTACAGCTTACAAAGAAAAGAC 58.032 33.333 0.00 0.00 0.00 3.01
3607 3749 8.336801 AGTAAGGAAGGTGACATATTGTTTTC 57.663 34.615 0.00 0.00 0.00 2.29
3608 3750 8.706322 AAGTAAGGAAGGTGACATATTGTTTT 57.294 30.769 0.00 0.00 0.00 2.43
3609 3751 8.576442 CAAAGTAAGGAAGGTGACATATTGTTT 58.424 33.333 0.00 0.00 0.00 2.83
3610 3752 7.309194 GCAAAGTAAGGAAGGTGACATATTGTT 60.309 37.037 0.00 0.00 0.00 2.83
3630 3772 1.428912 TCCAATCCAAGGAGGCAAAGT 59.571 47.619 0.00 0.00 37.29 2.66
3656 3798 1.633432 TGACCAACCCCTATGACAAGG 59.367 52.381 0.00 0.00 36.30 3.61
3658 3800 2.304761 GACTGACCAACCCCTATGACAA 59.695 50.000 0.00 0.00 0.00 3.18
3659 3801 1.906574 GACTGACCAACCCCTATGACA 59.093 52.381 0.00 0.00 0.00 3.58
3676 3978 4.988716 TGACGCTGACCGGGGACT 62.989 66.667 6.32 0.00 42.52 3.85
3745 4047 1.078759 GGACGACGATGCTTGTCCTG 61.079 60.000 0.00 0.00 45.86 3.86
3767 4069 2.565834 GCCCCAGCGTTCCTATATCTAA 59.434 50.000 0.00 0.00 0.00 2.10
3779 4081 4.101448 CTAGCCAAGCCCCAGCGT 62.101 66.667 0.00 0.00 46.67 5.07
3799 4101 2.604174 GGAACAGTGTCGCCGTTGG 61.604 63.158 0.00 0.00 0.00 3.77
3825 4128 3.114606 TCCAGATCTACTCCATTGCCAA 58.885 45.455 0.00 0.00 0.00 4.52
3828 4131 2.549778 GCCTCCAGATCTACTCCATTGC 60.550 54.545 0.00 0.00 0.00 3.56
3829 4132 2.288702 CGCCTCCAGATCTACTCCATTG 60.289 54.545 0.00 0.00 0.00 2.82
3830 4133 1.967066 CGCCTCCAGATCTACTCCATT 59.033 52.381 0.00 0.00 0.00 3.16
3831 4134 1.626686 CGCCTCCAGATCTACTCCAT 58.373 55.000 0.00 0.00 0.00 3.41
3832 4135 1.109920 GCGCCTCCAGATCTACTCCA 61.110 60.000 0.00 0.00 0.00 3.86
3833 4136 1.663173 GCGCCTCCAGATCTACTCC 59.337 63.158 0.00 0.00 0.00 3.85
3834 4137 1.663173 GGCGCCTCCAGATCTACTC 59.337 63.158 22.15 0.00 34.01 2.59
3836 4139 1.476007 ATGGGCGCCTCCAGATCTAC 61.476 60.000 28.56 5.64 40.56 2.59
3856 4159 3.857854 CACGATCAGCCACTGCGC 61.858 66.667 0.00 0.00 44.33 6.09
3866 4169 0.817654 AGATTCAGGACGCACGATCA 59.182 50.000 0.00 0.00 0.00 2.92
3867 4170 1.203928 CAGATTCAGGACGCACGATC 58.796 55.000 0.00 0.00 0.00 3.69
3869 4172 0.317160 AACAGATTCAGGACGCACGA 59.683 50.000 0.00 0.00 0.00 4.35
3870 4173 1.126846 GAAACAGATTCAGGACGCACG 59.873 52.381 0.00 0.00 37.99 5.34
3889 4193 4.868314 TGATGTTGCAATCCAATTGTGA 57.132 36.364 0.59 1.93 42.20 3.58
3892 4196 5.231357 CGAAGATGATGTTGCAATCCAATTG 59.769 40.000 0.59 0.00 43.06 2.32
3906 4210 9.481340 TTGTCCTTTCTTATATCGAAGATGATG 57.519 33.333 0.00 0.00 45.12 3.07
3912 4216 7.717568 TCCTCTTGTCCTTTCTTATATCGAAG 58.282 38.462 0.00 0.00 0.00 3.79
3915 4219 8.247562 CCTATCCTCTTGTCCTTTCTTATATCG 58.752 40.741 0.00 0.00 0.00 2.92
3916 4220 8.536175 CCCTATCCTCTTGTCCTTTCTTATATC 58.464 40.741 0.00 0.00 0.00 1.63
3918 4222 6.270231 GCCCTATCCTCTTGTCCTTTCTTATA 59.730 42.308 0.00 0.00 0.00 0.98
3921 4225 3.201045 GCCCTATCCTCTTGTCCTTTCTT 59.799 47.826 0.00 0.00 0.00 2.52
3922 4226 2.774809 GCCCTATCCTCTTGTCCTTTCT 59.225 50.000 0.00 0.00 0.00 2.52
3923 4227 2.505819 TGCCCTATCCTCTTGTCCTTTC 59.494 50.000 0.00 0.00 0.00 2.62
3924 4228 2.507471 CTGCCCTATCCTCTTGTCCTTT 59.493 50.000 0.00 0.00 0.00 3.11
3990 4294 1.263217 CGCAGGTTGTACCAGTGAAAC 59.737 52.381 0.00 0.00 41.95 2.78
3991 4295 1.134340 ACGCAGGTTGTACCAGTGAAA 60.134 47.619 8.53 0.00 41.95 2.69
3992 4296 0.466543 ACGCAGGTTGTACCAGTGAA 59.533 50.000 8.53 0.00 41.95 3.18
3994 4298 1.282248 CGACGCAGGTTGTACCAGTG 61.282 60.000 0.00 0.00 41.95 3.66
3995 4299 1.006571 CGACGCAGGTTGTACCAGT 60.007 57.895 0.00 0.00 41.95 4.00
3996 4300 1.736645 CCGACGCAGGTTGTACCAG 60.737 63.158 0.00 0.00 41.95 4.00
3997 4301 1.177895 TACCGACGCAGGTTGTACCA 61.178 55.000 7.74 0.00 43.00 3.25
3998 4302 0.174162 ATACCGACGCAGGTTGTACC 59.826 55.000 7.74 0.00 43.00 3.34
4034 4380 7.911651 ACACTCCTAGATCTGATTCAGAAAAA 58.088 34.615 19.73 7.56 44.04 1.94
4036 4382 8.774546 ATACACTCCTAGATCTGATTCAGAAA 57.225 34.615 19.73 8.20 44.04 2.52
4039 4385 8.946085 GTCTATACACTCCTAGATCTGATTCAG 58.054 40.741 5.18 7.38 0.00 3.02
4058 4406 2.163815 ACACACTCAGGCGTGTCTATAC 59.836 50.000 6.26 0.00 45.74 1.47
4059 4407 2.443416 ACACACTCAGGCGTGTCTATA 58.557 47.619 6.26 0.00 45.74 1.31
4069 4417 8.035394 ACTATATACTGAACAAACACACTCAGG 58.965 37.037 3.25 0.00 39.71 3.86
4070 4418 8.988064 ACTATATACTGAACAAACACACTCAG 57.012 34.615 0.00 0.00 40.92 3.35
4072 4420 8.033038 TGGACTATATACTGAACAAACACACTC 58.967 37.037 0.00 0.00 0.00 3.51
4093 4454 9.838339 CTACTTTTGGATATTTCAGTATGGACT 57.162 33.333 0.00 0.00 36.16 3.85
4100 4461 8.947115 GTGCTAACTACTTTTGGATATTTCAGT 58.053 33.333 0.00 0.00 0.00 3.41
4101 4462 9.167311 AGTGCTAACTACTTTTGGATATTTCAG 57.833 33.333 0.00 0.00 33.79 3.02
4111 4472 5.821204 ACTTTGCAGTGCTAACTACTTTTG 58.179 37.500 17.60 3.24 33.79 2.44
4138 4528 2.547855 GCAACAAAAATCCCTGGTCACC 60.548 50.000 0.00 0.00 0.00 4.02
4166 4556 5.319043 TCTTTCCCCTTGTTTAGTGATGT 57.681 39.130 0.00 0.00 0.00 3.06
4197 4587 3.485947 TGCAAGCAAAACTTATAGCCG 57.514 42.857 0.00 0.00 36.04 5.52
4212 4602 3.196463 TTGCATTGACCTTGTTTGCAAG 58.804 40.909 0.00 0.74 45.42 4.01
4213 4603 2.975732 TGCATTGACCTTGTTTGCAA 57.024 40.000 0.00 0.00 40.11 4.08
4214 4604 2.823984 CTTGCATTGACCTTGTTTGCA 58.176 42.857 0.00 0.00 41.22 4.08
4215 4605 1.528161 GCTTGCATTGACCTTGTTTGC 59.472 47.619 0.00 0.00 0.00 3.68
4216 4606 3.102052 AGCTTGCATTGACCTTGTTTG 57.898 42.857 0.00 0.00 0.00 2.93
4217 4607 3.825143 AAGCTTGCATTGACCTTGTTT 57.175 38.095 0.00 0.00 0.00 2.83
4218 4608 3.825143 AAAGCTTGCATTGACCTTGTT 57.175 38.095 0.00 0.00 0.00 2.83
4219 4609 3.132646 TGAAAAGCTTGCATTGACCTTGT 59.867 39.130 0.00 0.00 0.00 3.16
4220 4610 3.719924 TGAAAAGCTTGCATTGACCTTG 58.280 40.909 0.00 0.00 0.00 3.61
4221 4611 4.374399 CTTGAAAAGCTTGCATTGACCTT 58.626 39.130 0.00 0.00 36.98 3.50
4222 4612 3.986277 CTTGAAAAGCTTGCATTGACCT 58.014 40.909 0.00 0.00 36.98 3.85
4236 4626 2.034812 ACGGCGGCATAAAACTTGAAAA 59.965 40.909 13.24 0.00 0.00 2.29
4237 4627 1.609555 ACGGCGGCATAAAACTTGAAA 59.390 42.857 13.24 0.00 0.00 2.69
4238 4628 1.068885 CACGGCGGCATAAAACTTGAA 60.069 47.619 13.24 0.00 0.00 2.69
4239 4629 0.519519 CACGGCGGCATAAAACTTGA 59.480 50.000 13.24 0.00 0.00 3.02
4240 4630 0.455972 CCACGGCGGCATAAAACTTG 60.456 55.000 13.24 0.00 0.00 3.16
4241 4631 0.891904 ACCACGGCGGCATAAAACTT 60.892 50.000 13.24 0.00 39.03 2.66
4242 4632 0.036199 TACCACGGCGGCATAAAACT 60.036 50.000 13.24 0.00 39.03 2.66
4243 4633 0.375803 CTACCACGGCGGCATAAAAC 59.624 55.000 13.24 0.00 39.03 2.43
4244 4634 0.745128 CCTACCACGGCGGCATAAAA 60.745 55.000 13.24 0.00 39.03 1.52
4245 4635 1.153329 CCTACCACGGCGGCATAAA 60.153 57.895 13.24 0.00 39.03 1.40
4246 4636 2.059190 TCCTACCACGGCGGCATAA 61.059 57.895 13.24 0.00 39.03 1.90
4247 4637 2.442458 TCCTACCACGGCGGCATA 60.442 61.111 13.24 0.00 39.03 3.14
4248 4638 4.157120 GTCCTACCACGGCGGCAT 62.157 66.667 13.24 0.00 39.03 4.40
4249 4639 3.942377 TAGTCCTACCACGGCGGCA 62.942 63.158 13.24 0.00 39.03 5.69
4250 4640 3.142838 TAGTCCTACCACGGCGGC 61.143 66.667 13.24 0.00 39.03 6.53
4251 4641 1.389609 ATGTAGTCCTACCACGGCGG 61.390 60.000 13.24 0.00 42.50 6.13
4252 4642 0.458669 AATGTAGTCCTACCACGGCG 59.541 55.000 4.80 4.80 35.26 6.46
4253 4643 1.755380 AGAATGTAGTCCTACCACGGC 59.245 52.381 2.18 0.00 35.26 5.68
4254 4644 3.066900 CAGAGAATGTAGTCCTACCACGG 59.933 52.174 2.18 0.00 35.26 4.94
4255 4645 3.066900 CCAGAGAATGTAGTCCTACCACG 59.933 52.174 2.18 0.00 35.26 4.94
4256 4646 4.279145 TCCAGAGAATGTAGTCCTACCAC 58.721 47.826 2.18 0.00 35.26 4.16
4257 4647 4.603094 TCCAGAGAATGTAGTCCTACCA 57.397 45.455 2.18 0.00 35.26 3.25
4258 4648 6.098409 TGAATTCCAGAGAATGTAGTCCTACC 59.902 42.308 2.27 0.00 42.03 3.18
4259 4649 7.113658 TGAATTCCAGAGAATGTAGTCCTAC 57.886 40.000 2.27 0.00 42.03 3.18
4260 4650 7.733773 TTGAATTCCAGAGAATGTAGTCCTA 57.266 36.000 2.27 0.00 42.03 2.94
4261 4651 6.627087 TTGAATTCCAGAGAATGTAGTCCT 57.373 37.500 2.27 0.00 42.03 3.85
4262 4652 7.278875 AGATTGAATTCCAGAGAATGTAGTCC 58.721 38.462 2.27 0.00 42.03 3.85
4263 4653 9.255304 GTAGATTGAATTCCAGAGAATGTAGTC 57.745 37.037 2.27 0.00 42.03 2.59
4264 4654 8.762645 TGTAGATTGAATTCCAGAGAATGTAGT 58.237 33.333 2.27 0.00 42.03 2.73
4265 4655 9.775854 ATGTAGATTGAATTCCAGAGAATGTAG 57.224 33.333 2.27 0.00 42.03 2.74
4270 4660 9.993454 CTGATATGTAGATTGAATTCCAGAGAA 57.007 33.333 2.27 0.00 36.15 2.87
4271 4661 9.372189 TCTGATATGTAGATTGAATTCCAGAGA 57.628 33.333 2.27 0.00 0.00 3.10
4272 4662 9.421806 GTCTGATATGTAGATTGAATTCCAGAG 57.578 37.037 2.27 0.00 0.00 3.35
4273 4663 9.152327 AGTCTGATATGTAGATTGAATTCCAGA 57.848 33.333 2.27 1.12 0.00 3.86
4274 4664 9.421806 GAGTCTGATATGTAGATTGAATTCCAG 57.578 37.037 2.27 0.00 0.00 3.86
4275 4665 8.084684 CGAGTCTGATATGTAGATTGAATTCCA 58.915 37.037 2.27 0.00 0.00 3.53
4276 4666 8.300286 TCGAGTCTGATATGTAGATTGAATTCC 58.700 37.037 2.27 0.00 0.00 3.01
4277 4667 9.123709 GTCGAGTCTGATATGTAGATTGAATTC 57.876 37.037 0.00 0.00 0.00 2.17
4278 4668 8.085296 GGTCGAGTCTGATATGTAGATTGAATT 58.915 37.037 0.00 0.00 0.00 2.17
4279 4669 7.450014 AGGTCGAGTCTGATATGTAGATTGAAT 59.550 37.037 0.00 0.00 0.00 2.57
4280 4670 6.773200 AGGTCGAGTCTGATATGTAGATTGAA 59.227 38.462 0.00 0.00 0.00 2.69
4281 4671 6.299922 AGGTCGAGTCTGATATGTAGATTGA 58.700 40.000 0.00 0.00 0.00 2.57
4282 4672 6.567687 AGGTCGAGTCTGATATGTAGATTG 57.432 41.667 0.00 0.00 0.00 2.67
4283 4673 7.589958 AAAGGTCGAGTCTGATATGTAGATT 57.410 36.000 0.00 0.00 0.00 2.40
4284 4674 8.871629 ATAAAGGTCGAGTCTGATATGTAGAT 57.128 34.615 0.00 0.00 0.00 1.98
4285 4675 8.158132 AGATAAAGGTCGAGTCTGATATGTAGA 58.842 37.037 0.00 0.00 0.00 2.59
4286 4676 8.330466 AGATAAAGGTCGAGTCTGATATGTAG 57.670 38.462 0.00 0.00 0.00 2.74
4287 4677 9.961264 ATAGATAAAGGTCGAGTCTGATATGTA 57.039 33.333 0.00 0.00 0.00 2.29
4288 4678 8.871629 ATAGATAAAGGTCGAGTCTGATATGT 57.128 34.615 0.00 0.00 0.00 2.29
4289 4679 9.781834 GAATAGATAAAGGTCGAGTCTGATATG 57.218 37.037 0.00 0.00 0.00 1.78
4290 4680 8.962679 GGAATAGATAAAGGTCGAGTCTGATAT 58.037 37.037 0.00 0.00 0.00 1.63
4291 4681 7.393796 GGGAATAGATAAAGGTCGAGTCTGATA 59.606 40.741 0.00 0.00 0.00 2.15
4292 4682 6.209788 GGGAATAGATAAAGGTCGAGTCTGAT 59.790 42.308 0.00 0.00 0.00 2.90
4293 4683 5.535406 GGGAATAGATAAAGGTCGAGTCTGA 59.465 44.000 0.00 0.00 0.00 3.27
4294 4684 5.302059 TGGGAATAGATAAAGGTCGAGTCTG 59.698 44.000 0.00 0.00 0.00 3.51
4295 4685 5.455872 TGGGAATAGATAAAGGTCGAGTCT 58.544 41.667 0.00 0.00 0.00 3.24
4296 4686 5.786264 TGGGAATAGATAAAGGTCGAGTC 57.214 43.478 0.00 0.00 0.00 3.36
4297 4687 5.070580 CCTTGGGAATAGATAAAGGTCGAGT 59.929 44.000 0.00 0.00 34.04 4.18
4298 4688 5.511545 CCCTTGGGAATAGATAAAGGTCGAG 60.512 48.000 0.00 0.00 36.47 4.04
4299 4689 4.347000 CCCTTGGGAATAGATAAAGGTCGA 59.653 45.833 0.00 0.00 36.47 4.20
4300 4690 4.102681 ACCCTTGGGAATAGATAAAGGTCG 59.897 45.833 13.39 0.00 36.47 4.79
4301 4691 5.377478 CACCCTTGGGAATAGATAAAGGTC 58.623 45.833 13.39 0.00 36.47 3.85
4302 4692 4.386424 GCACCCTTGGGAATAGATAAAGGT 60.386 45.833 13.39 0.00 36.47 3.50
4303 4693 4.141158 AGCACCCTTGGGAATAGATAAAGG 60.141 45.833 13.39 0.00 37.69 3.11
4304 4694 5.053978 AGCACCCTTGGGAATAGATAAAG 57.946 43.478 13.39 0.00 0.00 1.85
4305 4695 5.200483 CAAGCACCCTTGGGAATAGATAAA 58.800 41.667 13.39 0.00 43.75 1.40
4306 4696 4.792068 CAAGCACCCTTGGGAATAGATAA 58.208 43.478 13.39 0.00 43.75 1.75
4307 4697 4.437682 CAAGCACCCTTGGGAATAGATA 57.562 45.455 13.39 0.00 43.75 1.98
4308 4698 3.303351 CAAGCACCCTTGGGAATAGAT 57.697 47.619 13.39 0.00 43.75 1.98
4309 4699 2.806945 CAAGCACCCTTGGGAATAGA 57.193 50.000 13.39 0.00 43.75 1.98
4317 4707 0.245539 CATCTTGCCAAGCACCCTTG 59.754 55.000 0.00 0.00 46.38 3.61
4318 4708 0.178953 ACATCTTGCCAAGCACCCTT 60.179 50.000 0.00 0.00 38.71 3.95
4319 4709 0.610232 GACATCTTGCCAAGCACCCT 60.610 55.000 0.00 0.00 38.71 4.34
4320 4710 0.895100 TGACATCTTGCCAAGCACCC 60.895 55.000 0.00 0.00 38.71 4.61
4321 4711 0.242017 GTGACATCTTGCCAAGCACC 59.758 55.000 0.00 0.00 38.71 5.01
4322 4712 0.242017 GGTGACATCTTGCCAAGCAC 59.758 55.000 0.00 2.10 38.71 4.40
4323 4713 0.178995 TGGTGACATCTTGCCAAGCA 60.179 50.000 0.00 0.00 32.94 3.91
4324 4714 2.644887 TGGTGACATCTTGCCAAGC 58.355 52.632 0.00 0.00 33.40 4.01
4330 4720 4.661326 ACGAAGTGCATGGTGACATCTTG 61.661 47.826 0.00 0.00 46.24 3.02
4331 4721 2.550855 ACGAAGTGCATGGTGACATCTT 60.551 45.455 0.00 0.00 46.24 2.40
4332 4722 1.002430 ACGAAGTGCATGGTGACATCT 59.998 47.619 0.00 0.00 46.24 2.90
4333 4723 1.442769 ACGAAGTGCATGGTGACATC 58.557 50.000 0.00 0.00 46.24 3.06
4335 4725 0.943673 CAACGAAGTGCATGGTGACA 59.056 50.000 0.00 0.00 45.00 3.58
4336 4726 1.195448 CTCAACGAAGTGCATGGTGAC 59.805 52.381 0.00 0.00 45.00 3.67
4337 4727 1.511850 CTCAACGAAGTGCATGGTGA 58.488 50.000 0.00 0.00 45.00 4.02
4338 4728 0.518636 CCTCAACGAAGTGCATGGTG 59.481 55.000 0.00 0.00 45.00 4.17
4339 4729 0.606401 CCCTCAACGAAGTGCATGGT 60.606 55.000 0.00 0.00 45.00 3.55
4340 4730 1.308069 CCCCTCAACGAAGTGCATGG 61.308 60.000 0.00 0.00 45.00 3.66
4341 4731 0.606401 ACCCCTCAACGAAGTGCATG 60.606 55.000 0.00 0.00 45.00 4.06
4342 4732 0.110486 AACCCCTCAACGAAGTGCAT 59.890 50.000 0.00 0.00 45.00 3.96
4343 4733 0.817634 CAACCCCTCAACGAAGTGCA 60.818 55.000 0.00 0.00 45.00 4.57
4344 4734 1.949257 CAACCCCTCAACGAAGTGC 59.051 57.895 0.00 0.00 45.00 4.40
4345 4735 1.515521 GGCAACCCCTCAACGAAGTG 61.516 60.000 0.00 0.00 45.00 3.16
4347 4737 0.609131 ATGGCAACCCCTCAACGAAG 60.609 55.000 0.00 0.00 0.00 3.79
4348 4738 0.608035 GATGGCAACCCCTCAACGAA 60.608 55.000 0.00 0.00 0.00 3.85
4349 4739 1.002624 GATGGCAACCCCTCAACGA 60.003 57.895 0.00 0.00 0.00 3.85
4350 4740 0.609131 AAGATGGCAACCCCTCAACG 60.609 55.000 0.00 0.00 0.00 4.10
4351 4741 1.177401 GAAGATGGCAACCCCTCAAC 58.823 55.000 0.00 0.00 0.00 3.18
4352 4742 0.039618 GGAAGATGGCAACCCCTCAA 59.960 55.000 0.00 0.00 0.00 3.02
4353 4743 0.846427 AGGAAGATGGCAACCCCTCA 60.846 55.000 0.00 0.00 0.00 3.86
4354 4744 0.106967 GAGGAAGATGGCAACCCCTC 60.107 60.000 14.74 14.74 34.21 4.30
4355 4745 0.846427 TGAGGAAGATGGCAACCCCT 60.846 55.000 6.10 6.10 0.00 4.79
4356 4746 0.681243 GTGAGGAAGATGGCAACCCC 60.681 60.000 0.00 0.00 0.00 4.95
4357 4747 0.038166 TGTGAGGAAGATGGCAACCC 59.962 55.000 0.00 0.00 0.00 4.11
4358 4748 1.271597 ACTGTGAGGAAGATGGCAACC 60.272 52.381 0.00 0.00 0.00 3.77
4359 4749 2.191128 ACTGTGAGGAAGATGGCAAC 57.809 50.000 0.00 0.00 0.00 4.17
4360 4750 2.957402 AACTGTGAGGAAGATGGCAA 57.043 45.000 0.00 0.00 0.00 4.52
4361 4751 4.225942 AGAATAACTGTGAGGAAGATGGCA 59.774 41.667 0.00 0.00 0.00 4.92
4362 4752 4.574013 CAGAATAACTGTGAGGAAGATGGC 59.426 45.833 0.00 0.00 41.30 4.40
4363 4753 5.121811 CCAGAATAACTGTGAGGAAGATGG 58.878 45.833 0.00 0.00 44.40 3.51
4364 4754 5.583854 CACCAGAATAACTGTGAGGAAGATG 59.416 44.000 0.00 0.00 44.40 2.90
4365 4755 5.338708 CCACCAGAATAACTGTGAGGAAGAT 60.339 44.000 0.00 0.00 44.40 2.40
4366 4756 4.020218 CCACCAGAATAACTGTGAGGAAGA 60.020 45.833 0.00 0.00 44.40 2.87
4367 4757 4.256920 CCACCAGAATAACTGTGAGGAAG 58.743 47.826 0.00 0.00 44.40 3.46
4368 4758 3.650942 ACCACCAGAATAACTGTGAGGAA 59.349 43.478 0.00 0.00 44.40 3.36
4369 4759 3.248024 ACCACCAGAATAACTGTGAGGA 58.752 45.455 0.00 0.00 44.40 3.71
4370 4760 3.703001 ACCACCAGAATAACTGTGAGG 57.297 47.619 0.00 0.00 44.40 3.86
4371 4761 5.407407 ACTACCACCAGAATAACTGTGAG 57.593 43.478 0.00 0.00 44.40 3.51
4372 4762 5.305902 TCAACTACCACCAGAATAACTGTGA 59.694 40.000 0.00 0.00 44.40 3.58
4373 4763 5.408604 GTCAACTACCACCAGAATAACTGTG 59.591 44.000 0.00 0.00 44.40 3.66
4374 4764 5.071250 TGTCAACTACCACCAGAATAACTGT 59.929 40.000 0.00 0.00 44.40 3.55
4375 4765 5.547465 TGTCAACTACCACCAGAATAACTG 58.453 41.667 0.00 0.00 45.36 3.16
4376 4766 5.542635 TCTGTCAACTACCACCAGAATAACT 59.457 40.000 0.00 0.00 0.00 2.24
4377 4767 5.790593 TCTGTCAACTACCACCAGAATAAC 58.209 41.667 0.00 0.00 0.00 1.89
4378 4768 6.620877 ATCTGTCAACTACCACCAGAATAA 57.379 37.500 0.00 0.00 35.93 1.40
4379 4769 7.914427 ATATCTGTCAACTACCACCAGAATA 57.086 36.000 0.00 0.00 35.93 1.75
4380 4770 6.814954 ATATCTGTCAACTACCACCAGAAT 57.185 37.500 0.00 0.00 35.93 2.40
4381 4771 6.666113 TGTATATCTGTCAACTACCACCAGAA 59.334 38.462 0.00 0.00 35.93 3.02
4382 4772 6.192044 TGTATATCTGTCAACTACCACCAGA 58.808 40.000 0.00 0.00 36.67 3.86
4383 4773 6.465439 TGTATATCTGTCAACTACCACCAG 57.535 41.667 0.00 0.00 0.00 4.00
4384 4774 6.860790 TTGTATATCTGTCAACTACCACCA 57.139 37.500 0.00 0.00 0.00 4.17
4385 4775 7.272978 ACATTGTATATCTGTCAACTACCACC 58.727 38.462 0.00 0.00 0.00 4.61
4386 4776 9.982651 ATACATTGTATATCTGTCAACTACCAC 57.017 33.333 7.55 0.00 0.00 4.16
4387 4777 9.981114 CATACATTGTATATCTGTCAACTACCA 57.019 33.333 8.95 0.00 0.00 3.25
4388 4778 8.926710 GCATACATTGTATATCTGTCAACTACC 58.073 37.037 8.95 0.00 0.00 3.18
4389 4779 9.476202 TGCATACATTGTATATCTGTCAACTAC 57.524 33.333 8.95 0.00 0.00 2.73
4390 4780 9.476202 GTGCATACATTGTATATCTGTCAACTA 57.524 33.333 8.95 0.00 0.00 2.24
4391 4781 7.986889 TGTGCATACATTGTATATCTGTCAACT 59.013 33.333 8.95 0.00 0.00 3.16
4392 4782 8.141835 TGTGCATACATTGTATATCTGTCAAC 57.858 34.615 8.95 1.58 0.00 3.18
4393 4783 8.907222 ATGTGCATACATTGTATATCTGTCAA 57.093 30.769 8.95 0.00 45.01 3.18
4423 4813 5.051173 CGAGCTGTCAAATATGCTTGAGTAG 60.051 44.000 0.00 0.00 38.77 2.57
4424 4814 4.805719 CGAGCTGTCAAATATGCTTGAGTA 59.194 41.667 0.00 0.00 38.77 2.59
4425 4815 3.620374 CGAGCTGTCAAATATGCTTGAGT 59.380 43.478 0.00 0.00 38.77 3.41
4426 4816 3.867493 TCGAGCTGTCAAATATGCTTGAG 59.133 43.478 0.00 0.00 39.98 3.02
4427 4817 3.860641 TCGAGCTGTCAAATATGCTTGA 58.139 40.909 0.00 0.00 41.85 3.02
4428 4818 4.604843 TTCGAGCTGTCAAATATGCTTG 57.395 40.909 0.00 0.00 38.05 4.01
4429 4819 5.124457 ACAATTCGAGCTGTCAAATATGCTT 59.876 36.000 0.00 0.00 35.76 3.91
4430 4820 4.637534 ACAATTCGAGCTGTCAAATATGCT 59.362 37.500 0.00 0.00 38.59 3.79
4431 4821 4.913376 ACAATTCGAGCTGTCAAATATGC 58.087 39.130 0.00 0.00 0.00 3.14
4432 4822 5.228635 GCAACAATTCGAGCTGTCAAATATG 59.771 40.000 0.00 0.00 0.00 1.78
4433 4823 5.335127 GCAACAATTCGAGCTGTCAAATAT 58.665 37.500 0.00 0.00 0.00 1.28
4434 4824 4.379394 GGCAACAATTCGAGCTGTCAAATA 60.379 41.667 0.00 0.00 0.00 1.40
4435 4825 3.568538 GCAACAATTCGAGCTGTCAAAT 58.431 40.909 0.00 0.00 0.00 2.32
4436 4826 2.287547 GGCAACAATTCGAGCTGTCAAA 60.288 45.455 0.00 0.00 0.00 2.69
4437 4827 1.266718 GGCAACAATTCGAGCTGTCAA 59.733 47.619 0.00 0.00 0.00 3.18
4438 4828 0.874390 GGCAACAATTCGAGCTGTCA 59.126 50.000 0.00 0.00 0.00 3.58
4439 4829 3.683581 GGCAACAATTCGAGCTGTC 57.316 52.632 0.00 0.00 0.00 3.51
4474 4865 1.095807 GCCATGGAGTTTCCCTACGC 61.096 60.000 18.40 0.00 35.03 4.42
4483 4874 2.360350 CAGGCACGCCATGGAGTT 60.360 61.111 19.53 1.38 38.92 3.01
4492 4883 3.683937 ACCATTTGGCAGGCACGC 61.684 61.111 0.00 0.00 39.32 5.34
4493 4884 2.259204 CACCATTTGGCAGGCACG 59.741 61.111 0.00 0.00 39.32 5.34
4494 4885 1.181098 AGACACCATTTGGCAGGCAC 61.181 55.000 0.00 0.00 34.40 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.