Multiple sequence alignment - TraesCS6D01G283600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G283600 chr6D 100.000 3383 0 0 1 3383 390781954 390778572 0.000000e+00 6248.0
1 TraesCS6D01G283600 chr6D 93.702 2223 101 14 606 2811 390486558 390484358 0.000000e+00 3293.0
2 TraesCS6D01G283600 chr6D 92.651 1837 105 15 606 2427 390729663 390727842 0.000000e+00 2617.0
3 TraesCS6D01G283600 chr6D 93.452 504 21 2 2880 3383 390484355 390483864 0.000000e+00 737.0
4 TraesCS6D01G283600 chr6D 93.639 393 24 1 1 392 55902443 55902835 1.350000e-163 586.0
5 TraesCS6D01G283600 chr6D 90.566 424 19 11 2969 3383 390727027 390726616 2.970000e-150 542.0
6 TraesCS6D01G283600 chr6D 93.201 353 23 1 2464 2816 390727542 390727191 5.000000e-143 518.0
7 TraesCS6D01G283600 chr6D 100.000 38 0 0 2907 2944 390727068 390727031 1.680000e-08 71.3
8 TraesCS6D01G283600 chr6D 95.000 40 1 1 2814 2852 136706551 136706512 1.010000e-05 62.1
9 TraesCS6D01G283600 chr6B 94.129 2010 78 14 818 2814 583723797 583725779 0.000000e+00 3022.0
10 TraesCS6D01G283600 chr6B 88.121 564 51 6 256 817 583723202 583723751 0.000000e+00 656.0
11 TraesCS6D01G283600 chr6B 89.655 116 9 3 3270 3383 583726546 583726660 9.780000e-31 145.0
12 TraesCS6D01G283600 chr6B 94.030 67 4 0 2975 3041 583725925 583725991 5.970000e-18 102.0
13 TraesCS6D01G283600 chr6B 95.000 40 0 2 2812 2850 504878393 504878355 1.010000e-05 62.1
14 TraesCS6D01G283600 chr6B 92.857 42 2 1 2809 2850 144272933 144272893 3.650000e-05 60.2
15 TraesCS6D01G283600 chr6B 86.792 53 5 1 2877 2929 583725776 583725826 1.310000e-04 58.4
16 TraesCS6D01G283600 chr6B 100.000 30 0 0 2821 2850 52572610 52572581 4.720000e-04 56.5
17 TraesCS6D01G283600 chr6A 93.119 2020 107 15 818 2816 537020683 537018675 0.000000e+00 2931.0
18 TraesCS6D01G283600 chr6A 95.000 420 16 1 2969 3383 537018611 537018192 0.000000e+00 654.0
19 TraesCS6D01G283600 chr6A 91.753 194 12 4 457 649 537021488 537021298 2.000000e-67 267.0
20 TraesCS6D01G283600 chr6A 89.103 156 13 2 663 817 537020878 537020726 1.240000e-44 191.0
21 TraesCS6D01G283600 chr4D 93.909 394 22 2 1 392 40799339 40798946 8.080000e-166 593.0
22 TraesCS6D01G283600 chr4D 74.568 1215 262 33 1180 2369 96892563 96893755 3.920000e-134 488.0
23 TraesCS6D01G283600 chr2A 93.909 394 21 2 1 393 136642724 136642333 2.910000e-165 592.0
24 TraesCS6D01G283600 chr2A 95.000 40 0 2 2811 2850 423846249 423846212 1.010000e-05 62.1
25 TraesCS6D01G283600 chr1D 93.401 394 25 1 1 393 415524749 415525142 1.750000e-162 582.0
26 TraesCS6D01G283600 chr7D 93.384 393 25 1 1 392 568365605 568365997 6.290000e-162 580.0
27 TraesCS6D01G283600 chr3D 92.768 401 27 2 1 400 570782824 570783223 2.260000e-161 579.0
28 TraesCS6D01G283600 chr3D 93.130 393 26 1 1 392 1835795 1835403 2.930000e-160 575.0
29 TraesCS6D01G283600 chr2D 93.165 395 26 1 1 394 629577177 629577571 2.260000e-161 579.0
30 TraesCS6D01G283600 chr5D 92.327 404 29 2 1 402 254594124 254594527 1.050000e-159 573.0
31 TraesCS6D01G283600 chr5D 97.297 37 1 0 2814 2850 61705046 61705082 2.820000e-06 63.9
32 TraesCS6D01G283600 chr7B 74.876 1214 269 26 1180 2369 20721521 20720320 1.390000e-143 520.0
33 TraesCS6D01G283600 chr4A 74.753 1216 258 35 1180 2369 481064684 481063492 1.810000e-137 499.0
34 TraesCS6D01G283600 chr4A 77.358 265 57 2 2108 2372 479620970 479620709 1.630000e-33 154.0
35 TraesCS6D01G283600 chr4B 72.757 1215 290 30 1180 2365 137702500 137703702 4.120000e-99 372.0
36 TraesCS6D01G283600 chr5A 97.297 37 1 0 2814 2850 51678949 51678985 2.820000e-06 63.9
37 TraesCS6D01G283600 chr5A 92.683 41 3 0 2810 2850 680850638 680850678 3.650000e-05 60.2
38 TraesCS6D01G283600 chr3B 95.000 40 1 1 2811 2850 10211097 10211059 1.010000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G283600 chr6D 390778572 390781954 3382 True 6248.000 6248 100.00000 1 3383 1 chr6D.!!$R2 3382
1 TraesCS6D01G283600 chr6D 390483864 390486558 2694 True 2015.000 3293 93.57700 606 3383 2 chr6D.!!$R3 2777
2 TraesCS6D01G283600 chr6D 390726616 390729663 3047 True 937.075 2617 94.10450 606 3383 4 chr6D.!!$R4 2777
3 TraesCS6D01G283600 chr6B 583723202 583726660 3458 False 796.680 3022 90.54540 256 3383 5 chr6B.!!$F1 3127
4 TraesCS6D01G283600 chr6A 537018192 537021488 3296 True 1010.750 2931 92.24375 457 3383 4 chr6A.!!$R1 2926
5 TraesCS6D01G283600 chr4D 96892563 96893755 1192 False 488.000 488 74.56800 1180 2369 1 chr4D.!!$F1 1189
6 TraesCS6D01G283600 chr7B 20720320 20721521 1201 True 520.000 520 74.87600 1180 2369 1 chr7B.!!$R1 1189
7 TraesCS6D01G283600 chr4A 481063492 481064684 1192 True 499.000 499 74.75300 1180 2369 1 chr4A.!!$R2 1189
8 TraesCS6D01G283600 chr4B 137702500 137703702 1202 False 372.000 372 72.75700 1180 2365 1 chr4B.!!$F1 1185

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.030235 GTGAAAAAGGACGTGTGGGC 59.970 55.0 0.0 0.0 0.00 5.36 F
269 270 0.112218 AATGCCCACACACCAGCTTA 59.888 50.0 0.0 0.0 0.00 3.09 F
389 390 0.309612 CTTGTGGGCGTTAGCGTTTT 59.690 50.0 0.0 0.0 46.35 2.43 F
1346 1828 0.980231 CCTTGCCTCCTCTACAGCCT 60.980 60.0 0.0 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 1827 2.048222 TGCGTTCTCTCCGGCAAG 60.048 61.111 0.00 0.0 31.5 4.01 R
1346 1828 2.048222 CTGCGTTCTCTCCGGCAA 60.048 61.111 0.00 0.0 34.6 4.52 R
2028 2535 2.084610 TGTTCTCTGAACCAGCATCG 57.915 50.000 7.81 0.0 0.0 3.84 R
2952 3841 0.096976 CAATGACGACGATGGCAACC 59.903 55.000 0.00 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.973206 TGGCAACTCGGATAAAAGAGA 57.027 42.857 0.00 0.00 37.87 3.10
22 23 3.861840 TGGCAACTCGGATAAAAGAGAG 58.138 45.455 0.00 0.00 37.87 3.20
23 24 3.260884 TGGCAACTCGGATAAAAGAGAGT 59.739 43.478 0.00 0.00 44.81 3.24
27 28 3.863041 ACTCGGATAAAAGAGAGTTGCC 58.137 45.455 0.00 0.00 40.64 4.52
28 29 3.260884 ACTCGGATAAAAGAGAGTTGCCA 59.739 43.478 0.00 0.00 40.64 4.92
29 30 4.080863 ACTCGGATAAAAGAGAGTTGCCAT 60.081 41.667 0.00 0.00 40.64 4.40
30 31 4.442706 TCGGATAAAAGAGAGTTGCCATC 58.557 43.478 0.00 0.00 0.00 3.51
31 32 4.162320 TCGGATAAAAGAGAGTTGCCATCT 59.838 41.667 0.00 0.00 0.00 2.90
32 33 4.272018 CGGATAAAAGAGAGTTGCCATCTG 59.728 45.833 0.00 0.00 0.00 2.90
33 34 4.036144 GGATAAAAGAGAGTTGCCATCTGC 59.964 45.833 0.00 0.00 41.77 4.26
34 35 2.875094 AAAGAGAGTTGCCATCTGCT 57.125 45.000 0.00 0.00 42.00 4.24
35 36 2.875094 AAGAGAGTTGCCATCTGCTT 57.125 45.000 0.00 0.00 42.00 3.91
36 37 3.988976 AAGAGAGTTGCCATCTGCTTA 57.011 42.857 0.00 0.00 42.00 3.09
37 38 3.258971 AGAGAGTTGCCATCTGCTTAC 57.741 47.619 0.00 0.00 42.00 2.34
38 39 2.568956 AGAGAGTTGCCATCTGCTTACA 59.431 45.455 0.00 0.00 42.00 2.41
39 40 3.008375 AGAGAGTTGCCATCTGCTTACAA 59.992 43.478 0.00 0.00 42.00 2.41
40 41 3.341823 AGAGTTGCCATCTGCTTACAAG 58.658 45.455 0.00 0.00 42.00 3.16
53 54 2.436417 CTTACAAGCAAAGCTAGGCCA 58.564 47.619 5.01 0.00 38.25 5.36
54 55 2.113860 TACAAGCAAAGCTAGGCCAG 57.886 50.000 5.01 0.97 38.25 4.85
55 56 0.111253 ACAAGCAAAGCTAGGCCAGT 59.889 50.000 5.01 2.94 38.25 4.00
56 57 1.251251 CAAGCAAAGCTAGGCCAGTT 58.749 50.000 5.01 0.00 38.25 3.16
57 58 1.068055 CAAGCAAAGCTAGGCCAGTTG 60.068 52.381 5.01 2.38 38.25 3.16
58 59 0.111253 AGCAAAGCTAGGCCAGTTGT 59.889 50.000 5.01 0.00 36.99 3.32
59 60 0.523519 GCAAAGCTAGGCCAGTTGTC 59.476 55.000 5.01 0.00 0.00 3.18
60 61 1.896220 CAAAGCTAGGCCAGTTGTCA 58.104 50.000 5.01 0.00 0.00 3.58
61 62 2.440409 CAAAGCTAGGCCAGTTGTCAT 58.560 47.619 5.01 0.00 0.00 3.06
62 63 2.119801 AAGCTAGGCCAGTTGTCATG 57.880 50.000 5.01 0.00 0.00 3.07
63 64 0.987294 AGCTAGGCCAGTTGTCATGT 59.013 50.000 5.01 0.00 0.00 3.21
64 65 2.187958 AGCTAGGCCAGTTGTCATGTA 58.812 47.619 5.01 0.00 0.00 2.29
65 66 2.093447 AGCTAGGCCAGTTGTCATGTAC 60.093 50.000 5.01 0.00 0.00 2.90
66 67 2.906354 CTAGGCCAGTTGTCATGTACC 58.094 52.381 5.01 0.00 0.00 3.34
67 68 0.328258 AGGCCAGTTGTCATGTACCC 59.672 55.000 5.01 0.00 0.00 3.69
68 69 0.328258 GGCCAGTTGTCATGTACCCT 59.672 55.000 0.00 0.00 0.00 4.34
69 70 1.453155 GCCAGTTGTCATGTACCCTG 58.547 55.000 0.00 0.00 0.00 4.45
70 71 1.453155 CCAGTTGTCATGTACCCTGC 58.547 55.000 0.00 0.00 0.00 4.85
71 72 1.271325 CCAGTTGTCATGTACCCTGCA 60.271 52.381 0.00 0.00 0.00 4.41
72 73 2.079158 CAGTTGTCATGTACCCTGCAG 58.921 52.381 6.78 6.78 0.00 4.41
73 74 1.977854 AGTTGTCATGTACCCTGCAGA 59.022 47.619 17.39 0.00 0.00 4.26
74 75 2.371841 AGTTGTCATGTACCCTGCAGAA 59.628 45.455 17.39 0.00 0.00 3.02
75 76 3.146066 GTTGTCATGTACCCTGCAGAAA 58.854 45.455 17.39 0.00 0.00 2.52
76 77 2.778299 TGTCATGTACCCTGCAGAAAC 58.222 47.619 17.39 10.55 0.00 2.78
77 78 2.105649 TGTCATGTACCCTGCAGAAACA 59.894 45.455 17.39 15.98 0.00 2.83
78 79 2.484264 GTCATGTACCCTGCAGAAACAC 59.516 50.000 17.39 7.96 0.00 3.32
79 80 2.105649 TCATGTACCCTGCAGAAACACA 59.894 45.455 17.39 13.47 0.00 3.72
80 81 2.949177 TGTACCCTGCAGAAACACAT 57.051 45.000 17.39 0.00 0.00 3.21
81 82 2.503331 TGTACCCTGCAGAAACACATG 58.497 47.619 17.39 0.00 0.00 3.21
82 83 1.812571 GTACCCTGCAGAAACACATGG 59.187 52.381 17.39 7.61 0.00 3.66
83 84 1.181098 ACCCTGCAGAAACACATGGC 61.181 55.000 17.39 0.00 0.00 4.40
84 85 1.180456 CCCTGCAGAAACACATGGCA 61.180 55.000 17.39 0.00 0.00 4.92
85 86 0.675083 CCTGCAGAAACACATGGCAA 59.325 50.000 17.39 0.00 33.58 4.52
86 87 1.603678 CCTGCAGAAACACATGGCAAC 60.604 52.381 17.39 0.00 33.58 4.17
87 88 1.338973 CTGCAGAAACACATGGCAACT 59.661 47.619 8.42 0.00 33.58 3.16
88 89 1.067364 TGCAGAAACACATGGCAACTG 59.933 47.619 0.00 1.50 37.61 3.16
89 90 1.774639 CAGAAACACATGGCAACTGC 58.225 50.000 0.00 0.00 41.14 4.40
99 100 2.341176 GCAACTGCCAGCTTTGGG 59.659 61.111 0.00 0.00 34.31 4.12
100 101 2.501602 GCAACTGCCAGCTTTGGGT 61.502 57.895 0.00 0.00 34.31 4.51
101 102 1.364901 CAACTGCCAGCTTTGGGTG 59.635 57.895 0.00 0.00 40.29 4.61
102 103 1.076044 AACTGCCAGCTTTGGGTGT 60.076 52.632 0.00 0.00 39.09 4.16
103 104 1.394266 AACTGCCAGCTTTGGGTGTG 61.394 55.000 0.00 0.00 39.09 3.82
104 105 2.521465 TGCCAGCTTTGGGTGTGG 60.521 61.111 0.00 0.00 39.09 4.17
105 106 3.305516 GCCAGCTTTGGGTGTGGG 61.306 66.667 0.00 0.00 39.09 4.61
106 107 3.305516 CCAGCTTTGGGTGTGGGC 61.306 66.667 0.00 0.00 39.09 5.36
107 108 3.673484 CAGCTTTGGGTGTGGGCG 61.673 66.667 0.00 0.00 36.34 6.13
108 109 3.884774 AGCTTTGGGTGTGGGCGA 61.885 61.111 0.00 0.00 0.00 5.54
109 110 3.365265 GCTTTGGGTGTGGGCGAG 61.365 66.667 0.00 0.00 0.00 5.03
110 111 2.672996 CTTTGGGTGTGGGCGAGG 60.673 66.667 0.00 0.00 0.00 4.63
111 112 3.172106 TTTGGGTGTGGGCGAGGA 61.172 61.111 0.00 0.00 0.00 3.71
112 113 3.190738 TTTGGGTGTGGGCGAGGAG 62.191 63.158 0.00 0.00 0.00 3.69
113 114 4.631740 TGGGTGTGGGCGAGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
114 115 4.083862 GGGTGTGGGCGAGGAGAC 62.084 72.222 0.00 0.00 0.00 3.36
115 116 4.436998 GGTGTGGGCGAGGAGACG 62.437 72.222 0.00 0.00 0.00 4.18
116 117 3.371063 GTGTGGGCGAGGAGACGA 61.371 66.667 0.00 0.00 35.09 4.20
117 118 3.062466 TGTGGGCGAGGAGACGAG 61.062 66.667 0.00 0.00 35.09 4.18
118 119 4.500116 GTGGGCGAGGAGACGAGC 62.500 72.222 0.00 0.00 36.99 5.03
121 122 4.838486 GGCGAGGAGACGAGCGTG 62.838 72.222 0.00 0.00 38.26 5.34
122 123 4.104417 GCGAGGAGACGAGCGTGT 62.104 66.667 0.00 0.00 35.09 4.49
123 124 2.202362 CGAGGAGACGAGCGTGTG 60.202 66.667 0.00 0.00 35.09 3.82
124 125 2.677979 CGAGGAGACGAGCGTGTGA 61.678 63.158 0.00 0.00 35.09 3.58
125 126 1.135731 GAGGAGACGAGCGTGTGAG 59.864 63.158 0.00 0.00 0.00 3.51
126 127 2.505118 GGAGACGAGCGTGTGAGC 60.505 66.667 0.00 0.00 37.41 4.26
127 128 2.872001 GAGACGAGCGTGTGAGCG 60.872 66.667 0.00 0.00 43.00 5.03
128 129 3.310253 GAGACGAGCGTGTGAGCGA 62.310 63.158 0.00 0.00 43.00 4.93
129 130 2.428569 GACGAGCGTGTGAGCGAA 60.429 61.111 0.00 0.00 43.00 4.70
130 131 2.429236 ACGAGCGTGTGAGCGAAG 60.429 61.111 0.00 0.00 43.00 3.79
131 132 2.429236 CGAGCGTGTGAGCGAAGT 60.429 61.111 0.00 0.00 43.00 3.01
132 133 2.710971 CGAGCGTGTGAGCGAAGTG 61.711 63.158 0.00 0.00 43.00 3.16
133 134 1.371758 GAGCGTGTGAGCGAAGTGA 60.372 57.895 0.00 0.00 43.00 3.41
134 135 0.734253 GAGCGTGTGAGCGAAGTGAT 60.734 55.000 0.00 0.00 43.00 3.06
135 136 0.526211 AGCGTGTGAGCGAAGTGATA 59.474 50.000 0.00 0.00 43.00 2.15
136 137 1.067846 AGCGTGTGAGCGAAGTGATAA 60.068 47.619 0.00 0.00 43.00 1.75
137 138 1.724623 GCGTGTGAGCGAAGTGATAAA 59.275 47.619 0.00 0.00 0.00 1.40
138 139 2.472397 GCGTGTGAGCGAAGTGATAAAC 60.472 50.000 0.00 0.00 0.00 2.01
139 140 2.222289 CGTGTGAGCGAAGTGATAAACG 60.222 50.000 0.00 0.00 0.00 3.60
143 144 2.462503 GCGAAGTGATAAACGCCCA 58.537 52.632 0.00 0.00 44.27 5.36
144 145 0.096454 GCGAAGTGATAAACGCCCAC 59.904 55.000 0.00 0.00 44.27 4.61
145 146 1.434555 CGAAGTGATAAACGCCCACA 58.565 50.000 0.00 0.00 33.53 4.17
146 147 1.127951 CGAAGTGATAAACGCCCACAC 59.872 52.381 0.00 0.00 33.53 3.82
147 148 2.147958 GAAGTGATAAACGCCCACACA 58.852 47.619 0.00 0.00 34.47 3.72
148 149 1.519408 AGTGATAAACGCCCACACAC 58.481 50.000 0.00 0.00 34.47 3.82
149 150 1.071699 AGTGATAAACGCCCACACACT 59.928 47.619 0.00 0.00 34.47 3.55
150 151 2.300723 AGTGATAAACGCCCACACACTA 59.699 45.455 0.00 0.00 35.77 2.74
151 152 2.671396 GTGATAAACGCCCACACACTAG 59.329 50.000 0.00 0.00 0.00 2.57
152 153 1.664151 GATAAACGCCCACACACTAGC 59.336 52.381 0.00 0.00 0.00 3.42
153 154 0.320946 TAAACGCCCACACACTAGCC 60.321 55.000 0.00 0.00 0.00 3.93
154 155 3.546714 AACGCCCACACACTAGCCC 62.547 63.158 0.00 0.00 0.00 5.19
155 156 4.778143 CGCCCACACACTAGCCCC 62.778 72.222 0.00 0.00 0.00 5.80
156 157 4.426313 GCCCACACACTAGCCCCC 62.426 72.222 0.00 0.00 0.00 5.40
157 158 2.610859 CCCACACACTAGCCCCCT 60.611 66.667 0.00 0.00 0.00 4.79
158 159 2.670148 CCCACACACTAGCCCCCTC 61.670 68.421 0.00 0.00 0.00 4.30
159 160 1.613630 CCACACACTAGCCCCCTCT 60.614 63.158 0.00 0.00 0.00 3.69
160 161 1.599047 CACACACTAGCCCCCTCTG 59.401 63.158 0.00 0.00 0.00 3.35
161 162 2.294078 ACACACTAGCCCCCTCTGC 61.294 63.158 0.00 0.00 0.00 4.26
162 163 3.077556 ACACTAGCCCCCTCTGCG 61.078 66.667 0.00 0.00 0.00 5.18
163 164 3.077556 CACTAGCCCCCTCTGCGT 61.078 66.667 0.00 0.00 0.00 5.24
164 165 3.077556 ACTAGCCCCCTCTGCGTG 61.078 66.667 0.00 0.00 0.00 5.34
165 166 4.537433 CTAGCCCCCTCTGCGTGC 62.537 72.222 0.00 0.00 0.00 5.34
170 171 4.680237 CCCCTCTGCGTGCGTGAA 62.680 66.667 0.00 0.00 0.00 3.18
171 172 2.664851 CCCTCTGCGTGCGTGAAA 60.665 61.111 0.00 0.00 0.00 2.69
172 173 2.250939 CCCTCTGCGTGCGTGAAAA 61.251 57.895 0.00 0.00 0.00 2.29
173 174 1.082756 CCTCTGCGTGCGTGAAAAC 60.083 57.895 0.00 0.00 0.00 2.43
174 175 1.498865 CCTCTGCGTGCGTGAAAACT 61.499 55.000 0.00 0.00 0.00 2.66
175 176 0.383491 CTCTGCGTGCGTGAAAACTG 60.383 55.000 0.00 0.00 0.00 3.16
176 177 1.369209 CTGCGTGCGTGAAAACTGG 60.369 57.895 0.00 0.00 0.00 4.00
177 178 2.725815 GCGTGCGTGAAAACTGGC 60.726 61.111 0.00 0.00 0.00 4.85
178 179 2.425124 CGTGCGTGAAAACTGGCG 60.425 61.111 0.00 0.00 0.00 5.69
179 180 2.713154 GTGCGTGAAAACTGGCGT 59.287 55.556 0.00 0.00 0.00 5.68
180 181 1.654137 GTGCGTGAAAACTGGCGTG 60.654 57.895 0.00 0.00 0.00 5.34
181 182 2.109739 TGCGTGAAAACTGGCGTGT 61.110 52.632 0.00 0.00 0.00 4.49
182 183 1.654137 GCGTGAAAACTGGCGTGTG 60.654 57.895 0.00 0.00 0.00 3.82
183 184 2.010670 CGTGAAAACTGGCGTGTGA 58.989 52.632 0.00 0.00 0.00 3.58
184 185 0.375454 CGTGAAAACTGGCGTGTGAA 59.625 50.000 0.00 0.00 0.00 3.18
185 186 1.822581 GTGAAAACTGGCGTGTGAAC 58.177 50.000 0.00 0.00 0.00 3.18
186 187 0.375454 TGAAAACTGGCGTGTGAACG 59.625 50.000 0.00 0.00 0.00 3.95
187 188 0.653636 GAAAACTGGCGTGTGAACGA 59.346 50.000 1.87 0.00 34.64 3.85
188 189 1.062880 GAAAACTGGCGTGTGAACGAA 59.937 47.619 1.87 0.00 34.64 3.85
189 190 1.305201 AAACTGGCGTGTGAACGAAT 58.695 45.000 1.87 0.00 34.64 3.34
190 191 1.305201 AACTGGCGTGTGAACGAATT 58.695 45.000 1.87 0.00 34.64 2.17
191 192 0.586319 ACTGGCGTGTGAACGAATTG 59.414 50.000 1.87 0.00 34.64 2.32
192 193 0.725784 CTGGCGTGTGAACGAATTGC 60.726 55.000 1.87 0.00 34.64 3.56
193 194 1.163420 TGGCGTGTGAACGAATTGCT 61.163 50.000 1.87 0.00 34.64 3.91
194 195 0.793861 GGCGTGTGAACGAATTGCTA 59.206 50.000 1.87 0.00 34.64 3.49
195 196 1.195900 GGCGTGTGAACGAATTGCTAA 59.804 47.619 1.87 0.00 34.64 3.09
196 197 2.350007 GGCGTGTGAACGAATTGCTAAA 60.350 45.455 1.87 0.00 34.64 1.85
197 198 2.650297 GCGTGTGAACGAATTGCTAAAC 59.350 45.455 1.87 0.00 34.64 2.01
198 199 2.894000 CGTGTGAACGAATTGCTAAACG 59.106 45.455 0.00 0.00 34.64 3.60
199 200 2.650297 GTGTGAACGAATTGCTAAACGC 59.350 45.455 0.00 0.00 39.77 4.84
200 201 2.239201 GTGAACGAATTGCTAAACGCC 58.761 47.619 0.00 0.00 38.05 5.68
201 202 1.198178 TGAACGAATTGCTAAACGCCC 59.802 47.619 0.00 0.00 38.05 6.13
202 203 1.198178 GAACGAATTGCTAAACGCCCA 59.802 47.619 0.00 0.00 38.05 5.36
203 204 0.519961 ACGAATTGCTAAACGCCCAC 59.480 50.000 0.00 0.00 38.05 4.61
204 205 0.519519 CGAATTGCTAAACGCCCACA 59.480 50.000 0.00 0.00 38.05 4.17
205 206 1.727857 CGAATTGCTAAACGCCCACAC 60.728 52.381 0.00 0.00 38.05 3.82
206 207 1.268352 GAATTGCTAAACGCCCACACA 59.732 47.619 0.00 0.00 38.05 3.72
207 208 0.596082 ATTGCTAAACGCCCACACAC 59.404 50.000 0.00 0.00 38.05 3.82
208 209 1.448922 TTGCTAAACGCCCACACACC 61.449 55.000 0.00 0.00 38.05 4.16
209 210 1.894756 GCTAAACGCCCACACACCA 60.895 57.895 0.00 0.00 0.00 4.17
210 211 1.946267 CTAAACGCCCACACACCAC 59.054 57.895 0.00 0.00 0.00 4.16
211 212 1.512156 CTAAACGCCCACACACCACC 61.512 60.000 0.00 0.00 0.00 4.61
212 213 2.962142 TAAACGCCCACACACCACCC 62.962 60.000 0.00 0.00 0.00 4.61
215 216 4.660938 GCCCACACACCACCCCTC 62.661 72.222 0.00 0.00 0.00 4.30
216 217 4.329545 CCCACACACCACCCCTCG 62.330 72.222 0.00 0.00 0.00 4.63
217 218 3.556306 CCACACACCACCCCTCGT 61.556 66.667 0.00 0.00 0.00 4.18
218 219 2.280797 CACACACCACCCCTCGTG 60.281 66.667 0.00 0.00 42.62 4.35
219 220 2.766651 ACACACCACCCCTCGTGT 60.767 61.111 0.00 0.00 43.90 4.49
226 227 3.650023 ACCCCTCGTGTGGTGAAA 58.350 55.556 0.00 0.00 32.36 2.69
227 228 1.916738 ACCCCTCGTGTGGTGAAAA 59.083 52.632 0.00 0.00 32.36 2.29
228 229 0.256464 ACCCCTCGTGTGGTGAAAAA 59.744 50.000 0.00 0.00 32.36 1.94
229 230 0.951558 CCCCTCGTGTGGTGAAAAAG 59.048 55.000 0.00 0.00 0.00 2.27
230 231 0.951558 CCCTCGTGTGGTGAAAAAGG 59.048 55.000 0.00 0.00 0.00 3.11
231 232 1.476110 CCCTCGTGTGGTGAAAAAGGA 60.476 52.381 0.00 0.00 0.00 3.36
232 233 1.602377 CCTCGTGTGGTGAAAAAGGAC 59.398 52.381 0.00 0.00 0.00 3.85
233 234 1.260561 CTCGTGTGGTGAAAAAGGACG 59.739 52.381 0.00 0.00 0.00 4.79
234 235 1.011333 CGTGTGGTGAAAAAGGACGT 58.989 50.000 0.00 0.00 0.00 4.34
235 236 1.267832 CGTGTGGTGAAAAAGGACGTG 60.268 52.381 0.00 0.00 0.00 4.49
236 237 1.741145 GTGTGGTGAAAAAGGACGTGT 59.259 47.619 0.00 0.00 0.00 4.49
237 238 1.740585 TGTGGTGAAAAAGGACGTGTG 59.259 47.619 0.00 0.00 0.00 3.82
238 239 1.064952 GTGGTGAAAAAGGACGTGTGG 59.935 52.381 0.00 0.00 0.00 4.17
239 240 0.666374 GGTGAAAAAGGACGTGTGGG 59.334 55.000 0.00 0.00 0.00 4.61
240 241 0.030235 GTGAAAAAGGACGTGTGGGC 59.970 55.000 0.00 0.00 0.00 5.36
241 242 1.281656 GAAAAAGGACGTGTGGGCG 59.718 57.895 0.00 0.00 37.94 6.13
242 243 1.153127 AAAAAGGACGTGTGGGCGA 60.153 52.632 0.00 0.00 35.59 5.54
243 244 1.441732 AAAAAGGACGTGTGGGCGAC 61.442 55.000 0.00 0.00 35.59 5.19
254 255 2.715624 GGGCGACCGAATGAATGC 59.284 61.111 0.00 0.00 43.64 3.56
263 264 0.171007 CGAATGAATGCCCACACACC 59.829 55.000 0.00 0.00 0.00 4.16
264 265 1.255882 GAATGAATGCCCACACACCA 58.744 50.000 0.00 0.00 0.00 4.17
266 267 1.252904 ATGAATGCCCACACACCAGC 61.253 55.000 0.00 0.00 0.00 4.85
267 268 1.604593 GAATGCCCACACACCAGCT 60.605 57.895 0.00 0.00 0.00 4.24
269 270 0.112218 AATGCCCACACACCAGCTTA 59.888 50.000 0.00 0.00 0.00 3.09
284 285 0.531200 GCTTAGTCCTACGTGGCACT 59.469 55.000 16.72 0.00 35.26 4.40
285 286 1.469423 GCTTAGTCCTACGTGGCACTC 60.469 57.143 16.72 0.00 35.26 3.51
289 290 1.414919 AGTCCTACGTGGCACTCAAAA 59.585 47.619 16.72 0.00 35.26 2.44
290 291 2.158871 AGTCCTACGTGGCACTCAAAAA 60.159 45.455 16.72 0.00 35.26 1.94
292 293 2.158871 TCCTACGTGGCACTCAAAAACT 60.159 45.455 16.72 0.00 35.26 2.66
295 296 0.381801 CGTGGCACTCAAAAACTGCT 59.618 50.000 16.72 0.00 0.00 4.24
297 298 2.032799 CGTGGCACTCAAAAACTGCTAA 59.967 45.455 16.72 0.00 0.00 3.09
302 303 3.061205 GCACTCAAAAACTGCTAAAACGC 60.061 43.478 0.00 0.00 0.00 4.84
305 306 2.116366 CAAAAACTGCTAAAACGCGCT 58.884 42.857 5.73 0.00 0.00 5.92
318 319 1.270968 CGCGCTAAGATTCGTGCAG 59.729 57.895 5.56 0.00 36.50 4.41
320 321 0.999406 GCGCTAAGATTCGTGCAGAA 59.001 50.000 0.00 0.00 43.93 3.02
333 334 1.197721 GTGCAGAATTGGTTGGACGAG 59.802 52.381 0.00 0.00 0.00 4.18
337 338 2.939103 CAGAATTGGTTGGACGAGGATC 59.061 50.000 0.00 0.00 0.00 3.36
338 339 2.840651 AGAATTGGTTGGACGAGGATCT 59.159 45.455 0.00 0.00 0.00 2.75
342 343 2.747177 TGGTTGGACGAGGATCTATGT 58.253 47.619 0.00 0.00 0.00 2.29
349 350 1.757118 ACGAGGATCTATGTGTGTGGG 59.243 52.381 0.00 0.00 0.00 4.61
351 352 2.481969 CGAGGATCTATGTGTGTGGGTG 60.482 54.545 0.00 0.00 0.00 4.61
353 354 2.768527 AGGATCTATGTGTGTGGGTGAG 59.231 50.000 0.00 0.00 0.00 3.51
354 355 2.501723 GGATCTATGTGTGTGGGTGAGT 59.498 50.000 0.00 0.00 0.00 3.41
357 358 1.806542 CTATGTGTGTGGGTGAGTTGC 59.193 52.381 0.00 0.00 0.00 4.17
359 360 1.453015 GTGTGTGGGTGAGTTGCCA 60.453 57.895 0.00 0.00 0.00 4.92
360 361 1.152984 TGTGTGGGTGAGTTGCCAG 60.153 57.895 0.00 0.00 0.00 4.85
365 366 3.050275 GGTGAGTTGCCAGACGCC 61.050 66.667 0.00 0.00 36.24 5.68
389 390 0.309612 CTTGTGGGCGTTAGCGTTTT 59.690 50.000 0.00 0.00 46.35 2.43
435 436 5.705609 ACGGCTGTTTCTATGACAATTTT 57.294 34.783 0.00 0.00 0.00 1.82
460 461 5.403897 TTGTCGTGAGAATGACAGTTTTC 57.596 39.130 1.46 0.00 45.08 2.29
522 523 2.139917 GAAAACCGTTCATTTTGCCCC 58.860 47.619 0.00 0.00 29.44 5.80
536 537 5.628797 TTTTGCCCCTTTTCAAGAAATCT 57.371 34.783 0.00 0.00 0.00 2.40
980 1444 6.152831 GGTTGGTTTGTCTTTCTTGCCTATAT 59.847 38.462 0.00 0.00 0.00 0.86
981 1445 7.338449 GGTTGGTTTGTCTTTCTTGCCTATATA 59.662 37.037 0.00 0.00 0.00 0.86
1026 1490 5.010820 GGAGGCCTGTATCGTAATAAAGAGT 59.989 44.000 12.00 0.00 0.00 3.24
1167 1640 2.554032 GGAGAATATGGTGGGCAAATCG 59.446 50.000 0.00 0.00 0.00 3.34
1168 1641 1.956477 AGAATATGGTGGGCAAATCGC 59.044 47.619 0.00 0.00 41.28 4.58
1343 1825 1.142748 CGCCTTGCCTCCTCTACAG 59.857 63.158 0.00 0.00 0.00 2.74
1345 1827 1.524482 CCTTGCCTCCTCTACAGCC 59.476 63.158 0.00 0.00 0.00 4.85
1346 1828 0.980231 CCTTGCCTCCTCTACAGCCT 60.980 60.000 0.00 0.00 0.00 4.58
1494 1982 1.260538 ATGAGAGGTCCGAGCTGCAA 61.261 55.000 4.45 0.00 0.00 4.08
1495 1983 1.293498 GAGAGGTCCGAGCTGCAAA 59.707 57.895 4.45 0.00 0.00 3.68
2028 2535 4.547859 CAGCCCACTGTAGATGGC 57.452 61.111 7.89 7.89 44.35 4.40
2365 2874 4.640771 ACACCCAGTCTTACAATGATGT 57.359 40.909 0.00 0.00 43.74 3.06
2411 2922 3.117776 TCAATGCTATGACAATGGAGGCT 60.118 43.478 0.00 0.00 0.00 4.58
2414 2925 2.025981 TGCTATGACAATGGAGGCTTGT 60.026 45.455 0.00 0.00 39.46 3.16
2579 3370 4.098044 TCCTTGTGGAAATGTTAACGCAAA 59.902 37.500 0.26 0.00 39.87 3.68
2604 3395 9.436957 AATGTGTTGTACAAGGAAGATAGTTAG 57.563 33.333 8.98 0.00 43.77 2.34
2612 3403 7.304497 ACAAGGAAGATAGTTAGTGAACAGT 57.696 36.000 0.00 0.00 38.10 3.55
2613 3404 7.379750 ACAAGGAAGATAGTTAGTGAACAGTC 58.620 38.462 0.00 0.00 38.10 3.51
2664 3455 5.840243 TGCTTAATTTGGTGGATCTGATG 57.160 39.130 0.00 0.00 0.00 3.07
2668 3459 6.678900 GCTTAATTTGGTGGATCTGATGTGTC 60.679 42.308 0.00 0.00 0.00 3.67
2830 3621 7.784470 ATCTTTGAGTATATAGGACAGACCC 57.216 40.000 0.00 0.00 40.05 4.46
2831 3622 6.679542 TCTTTGAGTATATAGGACAGACCCA 58.320 40.000 0.00 0.00 40.05 4.51
2832 3623 6.778069 TCTTTGAGTATATAGGACAGACCCAG 59.222 42.308 0.00 0.00 40.05 4.45
2833 3624 5.664815 TGAGTATATAGGACAGACCCAGT 57.335 43.478 0.00 0.00 40.05 4.00
2834 3625 5.386060 TGAGTATATAGGACAGACCCAGTG 58.614 45.833 0.00 0.00 40.05 3.66
2835 3626 4.153411 AGTATATAGGACAGACCCAGTGC 58.847 47.826 0.00 0.00 40.05 4.40
2836 3627 2.543037 TATAGGACAGACCCAGTGCA 57.457 50.000 0.00 0.00 40.05 4.57
2837 3628 1.885049 ATAGGACAGACCCAGTGCAT 58.115 50.000 0.00 0.00 40.05 3.96
2838 3629 2.543037 TAGGACAGACCCAGTGCATA 57.457 50.000 0.00 0.00 40.05 3.14
2839 3630 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
2840 3631 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
2841 3632 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
2842 3633 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
2843 3634 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
2844 3635 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
2845 3636 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
2846 3637 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
2847 3638 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
2848 3639 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
2849 3640 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2850 3641 0.176680 AGTGCATAGAAGCTCCCACG 59.823 55.000 0.00 0.00 34.99 4.94
2851 3642 1.153369 TGCATAGAAGCTCCCACGC 60.153 57.895 0.00 0.00 34.99 5.34
2852 3643 1.144936 GCATAGAAGCTCCCACGCT 59.855 57.895 0.00 0.00 43.31 5.07
2853 3644 1.156645 GCATAGAAGCTCCCACGCTG 61.157 60.000 0.00 0.00 40.79 5.18
2854 3645 0.531532 CATAGAAGCTCCCACGCTGG 60.532 60.000 0.00 0.00 40.79 4.85
2855 3646 0.978146 ATAGAAGCTCCCACGCTGGT 60.978 55.000 0.00 0.00 40.79 4.00
2856 3647 1.192146 TAGAAGCTCCCACGCTGGTT 61.192 55.000 0.00 0.00 40.79 3.67
2857 3648 2.032681 AAGCTCCCACGCTGGTTC 59.967 61.111 0.00 0.00 40.79 3.62
2858 3649 3.883744 AAGCTCCCACGCTGGTTCG 62.884 63.158 0.00 0.00 40.79 3.95
2859 3650 4.373116 GCTCCCACGCTGGTTCGA 62.373 66.667 3.82 0.00 35.17 3.71
2860 3651 2.342279 CTCCCACGCTGGTTCGAA 59.658 61.111 0.00 0.00 35.17 3.71
2861 3652 2.027625 CTCCCACGCTGGTTCGAAC 61.028 63.158 20.14 20.14 35.17 3.95
2870 3661 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
2871 3662 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
2872 3663 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
2873 3664 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
2874 3665 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
2875 3666 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
2878 3669 0.478507 AACCCAGGACCTCTTGGTTG 59.521 55.000 15.61 0.00 46.18 3.77
2879 3670 1.979723 AACCCAGGACCTCTTGGTTGA 60.980 52.381 15.61 0.00 46.18 3.18
2887 3678 1.071385 ACCTCTTGGTTGAGTGCTCTG 59.929 52.381 0.00 0.00 46.05 3.35
2948 3837 6.435430 TGGTTTCCATATCAGTTGAATTCG 57.565 37.500 0.04 0.00 0.00 3.34
2949 3838 5.943416 TGGTTTCCATATCAGTTGAATTCGT 59.057 36.000 0.04 0.00 0.00 3.85
2950 3839 7.106890 TGGTTTCCATATCAGTTGAATTCGTA 58.893 34.615 0.04 0.00 0.00 3.43
2951 3840 7.773224 TGGTTTCCATATCAGTTGAATTCGTAT 59.227 33.333 0.04 0.00 0.00 3.06
2952 3841 8.070171 GGTTTCCATATCAGTTGAATTCGTATG 58.930 37.037 0.04 0.00 0.00 2.39
2953 3842 7.728847 TTCCATATCAGTTGAATTCGTATGG 57.271 36.000 15.92 15.92 38.80 2.74
2954 3843 6.826668 TCCATATCAGTTGAATTCGTATGGT 58.173 36.000 18.62 10.15 38.64 3.55
2955 3844 7.279615 TCCATATCAGTTGAATTCGTATGGTT 58.720 34.615 18.62 7.10 38.64 3.67
2956 3845 7.226523 TCCATATCAGTTGAATTCGTATGGTTG 59.773 37.037 18.62 8.97 38.64 3.77
2957 3846 4.678509 TCAGTTGAATTCGTATGGTTGC 57.321 40.909 0.04 0.00 0.00 4.17
2958 3847 3.438781 TCAGTTGAATTCGTATGGTTGCC 59.561 43.478 0.04 0.00 0.00 4.52
2959 3848 3.190327 CAGTTGAATTCGTATGGTTGCCA 59.810 43.478 0.04 0.00 38.19 4.92
2960 3849 4.016444 AGTTGAATTCGTATGGTTGCCAT 58.984 39.130 5.92 5.92 46.99 4.40
2961 3850 4.096382 AGTTGAATTCGTATGGTTGCCATC 59.904 41.667 3.67 0.00 40.74 3.51
2962 3851 2.611751 TGAATTCGTATGGTTGCCATCG 59.388 45.455 3.67 8.38 40.74 3.84
2963 3852 2.325583 ATTCGTATGGTTGCCATCGT 57.674 45.000 3.67 0.00 40.74 3.73
2964 3853 1.647346 TTCGTATGGTTGCCATCGTC 58.353 50.000 3.67 0.00 40.74 4.20
2967 3856 0.928229 GTATGGTTGCCATCGTCGTC 59.072 55.000 3.67 0.00 40.74 4.20
2990 3900 7.475840 GTCATTGTTATTCTTTGGAGATGGAC 58.524 38.462 0.00 0.00 0.00 4.02
2998 3908 4.905429 TCTTTGGAGATGGACGATCAAAA 58.095 39.130 0.00 0.00 32.86 2.44
3056 3972 6.731292 AAAATTAGATTATGTTCCCTGCCC 57.269 37.500 0.00 0.00 0.00 5.36
3116 4428 4.079253 ACGTTCCTTCCAGCATGTTTTAT 58.921 39.130 0.00 0.00 0.00 1.40
3122 4435 5.700373 TCCTTCCAGCATGTTTTATTTTTGC 59.300 36.000 0.00 0.00 0.00 3.68
3278 4611 8.415192 TGTTTACAAACATATCTGTACGGATC 57.585 34.615 20.53 2.91 43.45 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.080863 ACTCTCTTTTATCCGAGTTGCCAT 60.081 41.667 0.00 0.00 33.21 4.40
2 3 3.863041 ACTCTCTTTTATCCGAGTTGCC 58.137 45.455 0.00 0.00 33.21 4.52
5 6 4.254492 GGCAACTCTCTTTTATCCGAGTT 58.746 43.478 0.00 0.00 44.86 3.01
6 7 3.260884 TGGCAACTCTCTTTTATCCGAGT 59.739 43.478 0.00 0.00 38.29 4.18
7 8 3.861840 TGGCAACTCTCTTTTATCCGAG 58.138 45.455 0.00 0.00 37.61 4.63
8 9 3.973206 TGGCAACTCTCTTTTATCCGA 57.027 42.857 0.00 0.00 37.61 4.55
9 10 4.272018 CAGATGGCAACTCTCTTTTATCCG 59.728 45.833 0.00 0.00 37.61 4.18
10 11 4.036144 GCAGATGGCAACTCTCTTTTATCC 59.964 45.833 0.00 0.00 43.97 2.59
11 12 5.167218 GCAGATGGCAACTCTCTTTTATC 57.833 43.478 0.00 0.00 43.97 1.75
33 34 2.421424 CTGGCCTAGCTTTGCTTGTAAG 59.579 50.000 3.32 0.00 40.44 2.34
34 35 2.224769 ACTGGCCTAGCTTTGCTTGTAA 60.225 45.455 3.32 0.00 40.44 2.41
35 36 1.351017 ACTGGCCTAGCTTTGCTTGTA 59.649 47.619 3.32 0.00 40.44 2.41
36 37 0.111253 ACTGGCCTAGCTTTGCTTGT 59.889 50.000 3.32 0.00 40.44 3.16
37 38 1.068055 CAACTGGCCTAGCTTTGCTTG 60.068 52.381 3.32 0.00 40.44 4.01
38 39 1.251251 CAACTGGCCTAGCTTTGCTT 58.749 50.000 3.32 0.00 40.44 3.91
39 40 0.111253 ACAACTGGCCTAGCTTTGCT 59.889 50.000 3.32 0.00 43.41 3.91
40 41 0.523519 GACAACTGGCCTAGCTTTGC 59.476 55.000 3.32 0.00 0.00 3.68
41 42 1.896220 TGACAACTGGCCTAGCTTTG 58.104 50.000 3.32 4.39 0.00 2.77
42 43 2.224867 ACATGACAACTGGCCTAGCTTT 60.225 45.455 3.32 0.00 0.00 3.51
43 44 1.352352 ACATGACAACTGGCCTAGCTT 59.648 47.619 3.32 0.00 0.00 3.74
44 45 0.987294 ACATGACAACTGGCCTAGCT 59.013 50.000 3.32 0.00 0.00 3.32
45 46 2.280628 GTACATGACAACTGGCCTAGC 58.719 52.381 3.32 0.00 0.00 3.42
46 47 2.420129 GGGTACATGACAACTGGCCTAG 60.420 54.545 3.32 2.01 0.00 3.02
47 48 1.557832 GGGTACATGACAACTGGCCTA 59.442 52.381 3.32 0.00 0.00 3.93
48 49 0.328258 GGGTACATGACAACTGGCCT 59.672 55.000 3.32 0.00 0.00 5.19
49 50 0.328258 AGGGTACATGACAACTGGCC 59.672 55.000 0.00 0.00 0.00 5.36
50 51 1.453155 CAGGGTACATGACAACTGGC 58.547 55.000 0.00 0.00 33.32 4.85
51 52 1.271325 TGCAGGGTACATGACAACTGG 60.271 52.381 0.00 0.00 35.95 4.00
52 53 2.079158 CTGCAGGGTACATGACAACTG 58.921 52.381 5.57 3.83 37.53 3.16
53 54 1.977854 TCTGCAGGGTACATGACAACT 59.022 47.619 15.13 0.00 0.00 3.16
54 55 2.472695 TCTGCAGGGTACATGACAAC 57.527 50.000 15.13 0.00 0.00 3.32
55 56 3.146066 GTTTCTGCAGGGTACATGACAA 58.854 45.455 15.13 0.00 0.00 3.18
56 57 2.105649 TGTTTCTGCAGGGTACATGACA 59.894 45.455 15.13 4.81 0.00 3.58
57 58 2.484264 GTGTTTCTGCAGGGTACATGAC 59.516 50.000 15.13 2.32 0.00 3.06
58 59 2.105649 TGTGTTTCTGCAGGGTACATGA 59.894 45.455 15.13 4.52 0.00 3.07
59 60 2.503331 TGTGTTTCTGCAGGGTACATG 58.497 47.619 15.13 0.00 0.00 3.21
60 61 2.949177 TGTGTTTCTGCAGGGTACAT 57.051 45.000 15.13 0.00 0.00 2.29
61 62 2.503331 CATGTGTTTCTGCAGGGTACA 58.497 47.619 15.13 14.12 0.00 2.90
62 63 1.812571 CCATGTGTTTCTGCAGGGTAC 59.187 52.381 15.13 10.07 32.52 3.34
63 64 1.886222 GCCATGTGTTTCTGCAGGGTA 60.886 52.381 15.13 0.00 38.64 3.69
64 65 1.181098 GCCATGTGTTTCTGCAGGGT 61.181 55.000 15.13 0.00 38.64 4.34
65 66 1.180456 TGCCATGTGTTTCTGCAGGG 61.180 55.000 15.13 5.40 39.31 4.45
66 67 0.675083 TTGCCATGTGTTTCTGCAGG 59.325 50.000 15.13 0.00 32.88 4.85
67 68 1.338973 AGTTGCCATGTGTTTCTGCAG 59.661 47.619 7.63 7.63 32.88 4.41
68 69 1.067364 CAGTTGCCATGTGTTTCTGCA 59.933 47.619 0.00 0.00 0.00 4.41
69 70 1.774639 CAGTTGCCATGTGTTTCTGC 58.225 50.000 0.00 0.00 0.00 4.26
70 71 1.774639 GCAGTTGCCATGTGTTTCTG 58.225 50.000 0.00 0.00 34.31 3.02
82 83 2.341176 CCCAAAGCTGGCAGTTGC 59.659 61.111 17.16 2.22 41.99 4.17
83 84 1.364901 CACCCAAAGCTGGCAGTTG 59.635 57.895 17.16 13.14 41.99 3.16
84 85 1.076044 ACACCCAAAGCTGGCAGTT 60.076 52.632 17.16 7.32 41.99 3.16
85 86 1.829533 CACACCCAAAGCTGGCAGT 60.830 57.895 17.16 0.00 41.99 4.40
86 87 2.567497 CCACACCCAAAGCTGGCAG 61.567 63.158 10.94 10.94 41.99 4.85
87 88 2.521465 CCACACCCAAAGCTGGCA 60.521 61.111 0.00 0.00 41.99 4.92
88 89 3.305516 CCCACACCCAAAGCTGGC 61.306 66.667 0.00 0.00 41.99 4.85
89 90 3.305516 GCCCACACCCAAAGCTGG 61.306 66.667 0.00 0.00 43.10 4.85
90 91 3.673484 CGCCCACACCCAAAGCTG 61.673 66.667 0.00 0.00 0.00 4.24
91 92 3.850098 CTCGCCCACACCCAAAGCT 62.850 63.158 0.00 0.00 0.00 3.74
92 93 3.365265 CTCGCCCACACCCAAAGC 61.365 66.667 0.00 0.00 0.00 3.51
93 94 2.672996 CCTCGCCCACACCCAAAG 60.673 66.667 0.00 0.00 0.00 2.77
94 95 3.172106 TCCTCGCCCACACCCAAA 61.172 61.111 0.00 0.00 0.00 3.28
95 96 3.636231 CTCCTCGCCCACACCCAA 61.636 66.667 0.00 0.00 0.00 4.12
96 97 4.631740 TCTCCTCGCCCACACCCA 62.632 66.667 0.00 0.00 0.00 4.51
97 98 4.083862 GTCTCCTCGCCCACACCC 62.084 72.222 0.00 0.00 0.00 4.61
98 99 4.436998 CGTCTCCTCGCCCACACC 62.437 72.222 0.00 0.00 0.00 4.16
99 100 3.343788 CTCGTCTCCTCGCCCACAC 62.344 68.421 0.00 0.00 0.00 3.82
100 101 3.062466 CTCGTCTCCTCGCCCACA 61.062 66.667 0.00 0.00 0.00 4.17
101 102 4.500116 GCTCGTCTCCTCGCCCAC 62.500 72.222 0.00 0.00 0.00 4.61
104 105 4.838486 CACGCTCGTCTCCTCGCC 62.838 72.222 0.00 0.00 0.00 5.54
105 106 4.104417 ACACGCTCGTCTCCTCGC 62.104 66.667 0.00 0.00 0.00 5.03
106 107 2.202362 CACACGCTCGTCTCCTCG 60.202 66.667 0.00 0.00 0.00 4.63
107 108 1.135731 CTCACACGCTCGTCTCCTC 59.864 63.158 0.00 0.00 0.00 3.71
108 109 2.983930 GCTCACACGCTCGTCTCCT 61.984 63.158 0.00 0.00 0.00 3.69
109 110 2.505118 GCTCACACGCTCGTCTCC 60.505 66.667 0.00 0.00 0.00 3.71
110 111 2.781750 TTCGCTCACACGCTCGTCTC 62.782 60.000 0.00 0.00 0.00 3.36
111 112 2.788172 CTTCGCTCACACGCTCGTCT 62.788 60.000 0.00 0.00 0.00 4.18
112 113 2.428569 TTCGCTCACACGCTCGTC 60.429 61.111 0.00 0.00 0.00 4.20
113 114 2.429236 CTTCGCTCACACGCTCGT 60.429 61.111 0.00 0.00 0.00 4.18
114 115 2.429236 ACTTCGCTCACACGCTCG 60.429 61.111 0.00 0.00 0.00 5.03
115 116 0.734253 ATCACTTCGCTCACACGCTC 60.734 55.000 0.00 0.00 0.00 5.03
116 117 0.526211 TATCACTTCGCTCACACGCT 59.474 50.000 0.00 0.00 0.00 5.07
117 118 1.346365 TTATCACTTCGCTCACACGC 58.654 50.000 0.00 0.00 0.00 5.34
118 119 2.222289 CGTTTATCACTTCGCTCACACG 60.222 50.000 0.00 0.00 0.00 4.49
119 120 2.472397 GCGTTTATCACTTCGCTCACAC 60.472 50.000 0.00 0.00 44.28 3.82
120 121 1.724623 GCGTTTATCACTTCGCTCACA 59.275 47.619 0.00 0.00 44.28 3.58
121 122 1.060698 GGCGTTTATCACTTCGCTCAC 59.939 52.381 8.18 0.00 46.37 3.51
122 123 1.355971 GGCGTTTATCACTTCGCTCA 58.644 50.000 8.18 0.00 46.37 4.26
123 124 0.651031 GGGCGTTTATCACTTCGCTC 59.349 55.000 8.18 0.38 46.37 5.03
124 125 0.036765 TGGGCGTTTATCACTTCGCT 60.037 50.000 8.18 0.00 46.37 4.93
125 126 0.096454 GTGGGCGTTTATCACTTCGC 59.904 55.000 0.00 0.00 46.42 4.70
126 127 1.127951 GTGTGGGCGTTTATCACTTCG 59.872 52.381 0.00 0.00 33.04 3.79
127 128 2.095919 GTGTGTGGGCGTTTATCACTTC 60.096 50.000 0.00 0.00 33.04 3.01
128 129 1.877443 GTGTGTGGGCGTTTATCACTT 59.123 47.619 0.00 0.00 33.04 3.16
129 130 1.071699 AGTGTGTGGGCGTTTATCACT 59.928 47.619 0.00 0.00 33.04 3.41
130 131 1.519408 AGTGTGTGGGCGTTTATCAC 58.481 50.000 0.00 0.00 0.00 3.06
131 132 2.933492 GCTAGTGTGTGGGCGTTTATCA 60.933 50.000 0.00 0.00 0.00 2.15
132 133 1.664151 GCTAGTGTGTGGGCGTTTATC 59.336 52.381 0.00 0.00 0.00 1.75
133 134 1.677820 GGCTAGTGTGTGGGCGTTTAT 60.678 52.381 0.00 0.00 0.00 1.40
134 135 0.320946 GGCTAGTGTGTGGGCGTTTA 60.321 55.000 0.00 0.00 0.00 2.01
135 136 1.599797 GGCTAGTGTGTGGGCGTTT 60.600 57.895 0.00 0.00 0.00 3.60
136 137 2.032071 GGCTAGTGTGTGGGCGTT 59.968 61.111 0.00 0.00 0.00 4.84
137 138 4.016706 GGGCTAGTGTGTGGGCGT 62.017 66.667 0.00 0.00 32.07 5.68
138 139 4.778143 GGGGCTAGTGTGTGGGCG 62.778 72.222 0.00 0.00 32.07 6.13
139 140 4.426313 GGGGGCTAGTGTGTGGGC 62.426 72.222 0.00 0.00 0.00 5.36
140 141 2.610859 AGGGGGCTAGTGTGTGGG 60.611 66.667 0.00 0.00 0.00 4.61
141 142 1.613630 AGAGGGGGCTAGTGTGTGG 60.614 63.158 0.00 0.00 0.00 4.17
142 143 1.599047 CAGAGGGGGCTAGTGTGTG 59.401 63.158 0.00 0.00 0.00 3.82
143 144 2.294078 GCAGAGGGGGCTAGTGTGT 61.294 63.158 0.00 0.00 0.00 3.72
144 145 2.586792 GCAGAGGGGGCTAGTGTG 59.413 66.667 0.00 0.00 0.00 3.82
145 146 3.077556 CGCAGAGGGGGCTAGTGT 61.078 66.667 0.00 0.00 0.00 3.55
146 147 3.077556 ACGCAGAGGGGGCTAGTG 61.078 66.667 0.00 0.00 0.00 2.74
147 148 3.077556 CACGCAGAGGGGGCTAGT 61.078 66.667 0.00 0.00 0.00 2.57
148 149 4.537433 GCACGCAGAGGGGGCTAG 62.537 72.222 0.68 0.00 0.00 3.42
153 154 4.680237 TTCACGCACGCAGAGGGG 62.680 66.667 0.00 0.00 35.05 4.79
154 155 2.250939 TTTTCACGCACGCAGAGGG 61.251 57.895 0.00 0.00 37.05 4.30
155 156 1.082756 GTTTTCACGCACGCAGAGG 60.083 57.895 0.00 0.00 0.00 3.69
156 157 0.383491 CAGTTTTCACGCACGCAGAG 60.383 55.000 0.00 0.00 0.00 3.35
157 158 1.641140 CAGTTTTCACGCACGCAGA 59.359 52.632 0.00 0.00 0.00 4.26
158 159 1.369209 CCAGTTTTCACGCACGCAG 60.369 57.895 0.00 0.00 0.00 5.18
159 160 2.712539 CCAGTTTTCACGCACGCA 59.287 55.556 0.00 0.00 0.00 5.24
160 161 2.725815 GCCAGTTTTCACGCACGC 60.726 61.111 0.00 0.00 0.00 5.34
161 162 2.425124 CGCCAGTTTTCACGCACG 60.425 61.111 0.00 0.00 0.00 5.34
162 163 1.654137 CACGCCAGTTTTCACGCAC 60.654 57.895 0.00 0.00 0.00 5.34
163 164 2.109739 ACACGCCAGTTTTCACGCA 61.110 52.632 0.00 0.00 0.00 5.24
164 165 1.654137 CACACGCCAGTTTTCACGC 60.654 57.895 0.00 0.00 0.00 5.34
165 166 0.375454 TTCACACGCCAGTTTTCACG 59.625 50.000 0.00 0.00 0.00 4.35
166 167 1.822581 GTTCACACGCCAGTTTTCAC 58.177 50.000 0.00 0.00 0.00 3.18
167 168 0.375454 CGTTCACACGCCAGTTTTCA 59.625 50.000 0.00 0.00 40.18 2.69
168 169 0.653636 TCGTTCACACGCCAGTTTTC 59.346 50.000 0.00 0.00 46.70 2.29
169 170 1.088306 TTCGTTCACACGCCAGTTTT 58.912 45.000 0.00 0.00 46.70 2.43
170 171 1.305201 ATTCGTTCACACGCCAGTTT 58.695 45.000 0.00 0.00 46.70 2.66
171 172 1.002900 CAATTCGTTCACACGCCAGTT 60.003 47.619 0.00 0.00 46.70 3.16
172 173 0.586319 CAATTCGTTCACACGCCAGT 59.414 50.000 0.00 0.00 46.70 4.00
173 174 0.725784 GCAATTCGTTCACACGCCAG 60.726 55.000 0.00 0.00 46.70 4.85
174 175 1.163420 AGCAATTCGTTCACACGCCA 61.163 50.000 0.00 0.00 46.70 5.69
175 176 0.793861 TAGCAATTCGTTCACACGCC 59.206 50.000 0.00 0.00 46.70 5.68
176 177 2.587612 TTAGCAATTCGTTCACACGC 57.412 45.000 0.00 0.00 46.70 5.34
177 178 4.722027 GCGTTTAGCAATTCGTTCACACG 61.722 47.826 0.00 0.00 46.53 4.49
192 193 1.512156 GGTGGTGTGTGGGCGTTTAG 61.512 60.000 0.00 0.00 0.00 1.85
193 194 1.526455 GGTGGTGTGTGGGCGTTTA 60.526 57.895 0.00 0.00 0.00 2.01
194 195 2.831284 GGTGGTGTGTGGGCGTTT 60.831 61.111 0.00 0.00 0.00 3.60
195 196 4.887190 GGGTGGTGTGTGGGCGTT 62.887 66.667 0.00 0.00 0.00 4.84
198 199 4.660938 GAGGGGTGGTGTGTGGGC 62.661 72.222 0.00 0.00 0.00 5.36
199 200 4.329545 CGAGGGGTGGTGTGTGGG 62.330 72.222 0.00 0.00 0.00 4.61
200 201 3.556306 ACGAGGGGTGGTGTGTGG 61.556 66.667 0.00 0.00 0.00 4.17
201 202 2.280797 CACGAGGGGTGGTGTGTG 60.281 66.667 0.00 0.00 43.16 3.82
209 210 0.256464 TTTTTCACCACACGAGGGGT 59.744 50.000 0.00 0.00 38.10 4.95
210 211 0.951558 CTTTTTCACCACACGAGGGG 59.048 55.000 0.00 0.00 0.00 4.79
211 212 0.951558 CCTTTTTCACCACACGAGGG 59.048 55.000 0.00 0.00 0.00 4.30
212 213 1.602377 GTCCTTTTTCACCACACGAGG 59.398 52.381 0.00 0.00 0.00 4.63
213 214 1.260561 CGTCCTTTTTCACCACACGAG 59.739 52.381 0.00 0.00 0.00 4.18
214 215 1.292061 CGTCCTTTTTCACCACACGA 58.708 50.000 0.00 0.00 0.00 4.35
215 216 1.011333 ACGTCCTTTTTCACCACACG 58.989 50.000 0.00 0.00 0.00 4.49
216 217 1.741145 ACACGTCCTTTTTCACCACAC 59.259 47.619 0.00 0.00 0.00 3.82
217 218 1.740585 CACACGTCCTTTTTCACCACA 59.259 47.619 0.00 0.00 0.00 4.17
218 219 1.064952 CCACACGTCCTTTTTCACCAC 59.935 52.381 0.00 0.00 0.00 4.16
219 220 1.384525 CCACACGTCCTTTTTCACCA 58.615 50.000 0.00 0.00 0.00 4.17
220 221 0.666374 CCCACACGTCCTTTTTCACC 59.334 55.000 0.00 0.00 0.00 4.02
221 222 0.030235 GCCCACACGTCCTTTTTCAC 59.970 55.000 0.00 0.00 0.00 3.18
222 223 1.440938 CGCCCACACGTCCTTTTTCA 61.441 55.000 0.00 0.00 0.00 2.69
223 224 1.161563 TCGCCCACACGTCCTTTTTC 61.162 55.000 0.00 0.00 0.00 2.29
224 225 1.153127 TCGCCCACACGTCCTTTTT 60.153 52.632 0.00 0.00 0.00 1.94
225 226 1.890510 GTCGCCCACACGTCCTTTT 60.891 57.895 0.00 0.00 0.00 2.27
226 227 2.280592 GTCGCCCACACGTCCTTT 60.281 61.111 0.00 0.00 0.00 3.11
227 228 4.309950 GGTCGCCCACACGTCCTT 62.310 66.667 0.00 0.00 38.09 3.36
230 231 3.927163 ATTCGGTCGCCCACACGTC 62.927 63.158 0.00 0.00 0.00 4.34
231 232 3.998672 ATTCGGTCGCCCACACGT 61.999 61.111 0.00 0.00 0.00 4.49
232 233 3.487202 CATTCGGTCGCCCACACG 61.487 66.667 0.00 0.00 0.00 4.49
233 234 1.024579 ATTCATTCGGTCGCCCACAC 61.025 55.000 0.00 0.00 0.00 3.82
234 235 1.024046 CATTCATTCGGTCGCCCACA 61.024 55.000 0.00 0.00 0.00 4.17
235 236 1.721487 CATTCATTCGGTCGCCCAC 59.279 57.895 0.00 0.00 0.00 4.61
236 237 2.112198 GCATTCATTCGGTCGCCCA 61.112 57.895 0.00 0.00 0.00 5.36
237 238 2.715624 GCATTCATTCGGTCGCCC 59.284 61.111 0.00 0.00 0.00 6.13
238 239 2.715624 GGCATTCATTCGGTCGCC 59.284 61.111 0.00 0.00 0.00 5.54
239 240 2.112198 TGGGCATTCATTCGGTCGC 61.112 57.895 0.00 0.00 0.00 5.19
240 241 1.024046 TGTGGGCATTCATTCGGTCG 61.024 55.000 0.00 0.00 0.00 4.79
241 242 0.451783 GTGTGGGCATTCATTCGGTC 59.548 55.000 0.00 0.00 0.00 4.79
242 243 0.251121 TGTGTGGGCATTCATTCGGT 60.251 50.000 0.00 0.00 0.00 4.69
243 244 0.171007 GTGTGTGGGCATTCATTCGG 59.829 55.000 0.00 0.00 0.00 4.30
244 245 0.171007 GGTGTGTGGGCATTCATTCG 59.829 55.000 0.00 0.00 0.00 3.34
245 246 1.203052 CTGGTGTGTGGGCATTCATTC 59.797 52.381 0.00 0.00 0.00 2.67
246 247 1.259609 CTGGTGTGTGGGCATTCATT 58.740 50.000 0.00 0.00 0.00 2.57
247 248 1.252904 GCTGGTGTGTGGGCATTCAT 61.253 55.000 0.00 0.00 0.00 2.57
248 249 1.902918 GCTGGTGTGTGGGCATTCA 60.903 57.895 0.00 0.00 0.00 2.57
249 250 1.181098 AAGCTGGTGTGTGGGCATTC 61.181 55.000 0.00 0.00 0.00 2.67
250 251 0.112218 TAAGCTGGTGTGTGGGCATT 59.888 50.000 0.00 0.00 0.00 3.56
251 252 0.322816 CTAAGCTGGTGTGTGGGCAT 60.323 55.000 0.00 0.00 0.00 4.40
252 253 1.073025 CTAAGCTGGTGTGTGGGCA 59.927 57.895 0.00 0.00 0.00 5.36
253 254 0.955919 GACTAAGCTGGTGTGTGGGC 60.956 60.000 0.00 0.00 0.00 5.36
254 255 0.321653 GGACTAAGCTGGTGTGTGGG 60.322 60.000 0.00 0.00 0.00 4.61
263 264 0.530744 TGCCACGTAGGACTAAGCTG 59.469 55.000 8.04 0.00 41.22 4.24
264 265 0.531200 GTGCCACGTAGGACTAAGCT 59.469 55.000 8.04 0.00 41.22 3.74
266 267 1.816835 TGAGTGCCACGTAGGACTAAG 59.183 52.381 8.30 0.00 41.22 2.18
267 268 1.913778 TGAGTGCCACGTAGGACTAA 58.086 50.000 8.30 0.00 41.22 2.24
269 270 1.045407 TTTGAGTGCCACGTAGGACT 58.955 50.000 8.03 8.03 41.22 3.85
284 285 2.113289 GCGCGTTTTAGCAGTTTTTGA 58.887 42.857 8.43 0.00 36.85 2.69
285 286 2.116366 AGCGCGTTTTAGCAGTTTTTG 58.884 42.857 8.43 0.00 36.85 2.44
289 290 2.409975 TCTTAGCGCGTTTTAGCAGTT 58.590 42.857 8.43 0.00 36.85 3.16
290 291 2.074547 TCTTAGCGCGTTTTAGCAGT 57.925 45.000 8.43 0.00 36.85 4.40
292 293 2.028763 CGAATCTTAGCGCGTTTTAGCA 59.971 45.455 8.43 0.00 36.85 3.49
295 296 2.222640 GCACGAATCTTAGCGCGTTTTA 60.223 45.455 8.43 0.00 34.37 1.52
297 298 0.094730 GCACGAATCTTAGCGCGTTT 59.905 50.000 8.43 0.00 34.37 3.60
302 303 3.544834 CCAATTCTGCACGAATCTTAGCG 60.545 47.826 10.52 0.00 41.42 4.26
305 306 4.155826 CCAACCAATTCTGCACGAATCTTA 59.844 41.667 10.52 0.00 41.42 2.10
318 319 3.268023 AGATCCTCGTCCAACCAATTC 57.732 47.619 0.00 0.00 0.00 2.17
320 321 3.711704 ACATAGATCCTCGTCCAACCAAT 59.288 43.478 0.00 0.00 0.00 3.16
321 322 3.104512 ACATAGATCCTCGTCCAACCAA 58.895 45.455 0.00 0.00 0.00 3.67
322 323 2.430694 CACATAGATCCTCGTCCAACCA 59.569 50.000 0.00 0.00 0.00 3.67
323 324 2.431057 ACACATAGATCCTCGTCCAACC 59.569 50.000 0.00 0.00 0.00 3.77
325 326 3.096852 ACACACATAGATCCTCGTCCAA 58.903 45.455 0.00 0.00 0.00 3.53
333 334 2.501723 ACTCACCCACACACATAGATCC 59.498 50.000 0.00 0.00 0.00 3.36
337 338 1.806542 GCAACTCACCCACACACATAG 59.193 52.381 0.00 0.00 0.00 2.23
338 339 1.544537 GGCAACTCACCCACACACATA 60.545 52.381 0.00 0.00 0.00 2.29
342 343 1.152984 CTGGCAACTCACCCACACA 60.153 57.895 0.00 0.00 37.61 3.72
349 350 3.050275 GGGCGTCTGGCAACTCAC 61.050 66.667 0.00 0.00 46.16 3.51
351 352 3.050275 GTGGGCGTCTGGCAACTC 61.050 66.667 0.00 0.00 46.16 3.01
357 358 4.988598 ACAAGCGTGGGCGTCTGG 62.989 66.667 4.26 0.00 46.35 3.86
369 370 2.125202 AAACGCTAACGCCCACAAGC 62.125 55.000 0.00 0.00 45.53 4.01
371 372 0.308376 GAAAACGCTAACGCCCACAA 59.692 50.000 0.00 0.00 45.53 3.33
383 384 6.848470 ATGCTTAAAATTCTACGAAAACGC 57.152 33.333 0.00 0.00 0.00 4.84
385 386 8.889849 TGCTATGCTTAAAATTCTACGAAAAC 57.110 30.769 0.00 0.00 0.00 2.43
389 390 7.690637 CGTTTTGCTATGCTTAAAATTCTACGA 59.309 33.333 0.00 0.00 0.00 3.43
435 436 5.811399 AACTGTCATTCTCACGACAAAAA 57.189 34.783 0.00 0.00 41.39 1.94
460 461 4.566360 AGGATTTGTTGTGTTTGCGAAAAG 59.434 37.500 0.00 0.00 0.00 2.27
522 523 7.002361 GGTGGAACGACAGATTTCTTGAAAAG 61.002 42.308 0.00 0.00 42.07 2.27
765 1182 0.824759 AACCCGCGAGAAGATAAGCT 59.175 50.000 8.23 0.00 0.00 3.74
980 1444 2.205152 GGGGCTCCGGCGATACTTA 61.205 63.158 9.30 0.00 39.81 2.24
981 1445 3.547513 GGGGCTCCGGCGATACTT 61.548 66.667 9.30 0.00 39.81 2.24
1026 1490 2.097036 TGTCTAGCTAGCTGCCGTAAA 58.903 47.619 27.68 4.07 44.23 2.01
1343 1825 2.815647 CGTTCTCTCCGGCAAGGC 60.816 66.667 0.00 0.00 40.77 4.35
1345 1827 2.048222 TGCGTTCTCTCCGGCAAG 60.048 61.111 0.00 0.00 31.50 4.01
1346 1828 2.048222 CTGCGTTCTCTCCGGCAA 60.048 61.111 0.00 0.00 34.60 4.52
1724 2219 5.887598 TGAATGAGCACCACAATATAGCTTT 59.112 36.000 0.00 0.00 35.36 3.51
1731 2226 6.363882 TGGATTATGAATGAGCACCACAATA 58.636 36.000 0.00 0.00 0.00 1.90
2028 2535 2.084610 TGTTCTCTGAACCAGCATCG 57.915 50.000 7.81 0.00 0.00 3.84
2365 2874 4.464951 ACACAGTTACATCAATCCCGAGTA 59.535 41.667 0.00 0.00 0.00 2.59
2579 3370 8.594550 ACTAACTATCTTCCTTGTACAACACAT 58.405 33.333 3.59 0.00 36.90 3.21
2604 3395 8.547967 TGAATATCCTAAACTTGACTGTTCAC 57.452 34.615 0.00 0.00 0.00 3.18
2612 3403 9.667107 CAAAGTACCTGAATATCCTAAACTTGA 57.333 33.333 0.00 0.00 0.00 3.02
2613 3404 9.667107 TCAAAGTACCTGAATATCCTAAACTTG 57.333 33.333 0.00 0.00 0.00 3.16
2642 3433 5.125900 CACATCAGATCCACCAAATTAAGCA 59.874 40.000 0.00 0.00 0.00 3.91
2664 3455 6.377327 TGAAAGAATTGAGTGAAAGGACAC 57.623 37.500 0.00 0.00 40.60 3.67
2699 3490 8.730680 GGTATCTAATGGTATGTTATTGGCTTG 58.269 37.037 0.00 0.00 0.00 4.01
2710 3501 9.354673 ACTTTTCCAATGGTATCTAATGGTATG 57.645 33.333 0.00 0.00 32.90 2.39
2763 3554 7.764443 GCTGATCACCAGTAGAAAACTAATGTA 59.236 37.037 0.00 0.00 44.71 2.29
2768 3559 4.530553 TGGCTGATCACCAGTAGAAAACTA 59.469 41.667 11.56 0.00 44.71 2.24
2814 3605 3.895656 TGCACTGGGTCTGTCCTATATAC 59.104 47.826 0.00 0.00 36.25 1.47
2815 3606 4.193240 TGCACTGGGTCTGTCCTATATA 57.807 45.455 0.00 0.00 36.25 0.86
2816 3607 3.046283 TGCACTGGGTCTGTCCTATAT 57.954 47.619 0.00 0.00 36.25 0.86
2817 3608 2.543037 TGCACTGGGTCTGTCCTATA 57.457 50.000 0.00 0.00 36.25 1.31
2818 3609 1.885049 ATGCACTGGGTCTGTCCTAT 58.115 50.000 0.00 0.00 36.25 2.57
2819 3610 2.024369 TCTATGCACTGGGTCTGTCCTA 60.024 50.000 0.00 0.00 36.25 2.94
2820 3611 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
2821 3612 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
2822 3613 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
2823 3614 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
2824 3615 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
2825 3616 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
2826 3617 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
2827 3618 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
2828 3619 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
2829 3620 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
2830 3621 1.661341 GTGGGAGCTTCTATGCACTG 58.339 55.000 0.00 0.00 34.99 3.66
2831 3622 0.176680 CGTGGGAGCTTCTATGCACT 59.823 55.000 0.00 0.00 34.99 4.40
2832 3623 1.432270 GCGTGGGAGCTTCTATGCAC 61.432 60.000 17.22 3.47 34.99 4.57
2833 3624 1.153369 GCGTGGGAGCTTCTATGCA 60.153 57.895 17.22 0.00 34.99 3.96
2834 3625 1.144936 AGCGTGGGAGCTTCTATGC 59.855 57.895 14.54 14.54 46.80 3.14
2835 3626 0.531532 CCAGCGTGGGAGCTTCTATG 60.532 60.000 0.00 0.00 46.80 2.23
2836 3627 0.978146 ACCAGCGTGGGAGCTTCTAT 60.978 55.000 8.57 0.00 46.80 1.98
2837 3628 1.192146 AACCAGCGTGGGAGCTTCTA 61.192 55.000 8.57 0.00 46.80 2.10
2838 3629 2.456287 GAACCAGCGTGGGAGCTTCT 62.456 60.000 8.57 0.00 46.80 2.85
2839 3630 2.032681 AACCAGCGTGGGAGCTTC 59.967 61.111 8.57 0.00 46.80 3.86
2840 3631 2.032681 GAACCAGCGTGGGAGCTT 59.967 61.111 8.57 0.00 46.80 3.74
2842 3633 3.876589 TTCGAACCAGCGTGGGAGC 62.877 63.158 0.00 0.00 43.37 4.70
2843 3634 2.027625 GTTCGAACCAGCGTGGGAG 61.028 63.158 17.68 0.93 43.37 4.30
2844 3635 2.029964 GTTCGAACCAGCGTGGGA 59.970 61.111 17.68 0.00 43.37 4.37
2854 3645 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
2855 3646 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
2856 3647 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
2857 3648 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2868 3659 1.071385 ACAGAGCACTCAACCAAGAGG 59.929 52.381 0.00 0.00 39.97 3.69
2869 3660 2.540265 ACAGAGCACTCAACCAAGAG 57.460 50.000 0.00 0.00 41.44 2.85
2870 3661 4.415881 TTTACAGAGCACTCAACCAAGA 57.584 40.909 0.00 0.00 0.00 3.02
2871 3662 5.499139 TTTTTACAGAGCACTCAACCAAG 57.501 39.130 0.00 0.00 0.00 3.61
2944 3833 2.210116 GACGATGGCAACCATACGAAT 58.790 47.619 18.63 4.40 45.26 3.34
2945 3834 1.647346 GACGATGGCAACCATACGAA 58.353 50.000 18.63 0.00 45.26 3.85
2946 3835 0.526739 CGACGATGGCAACCATACGA 60.527 55.000 18.63 0.00 45.26 3.43
2947 3836 0.804544 ACGACGATGGCAACCATACG 60.805 55.000 0.00 14.30 45.26 3.06
2948 3837 0.928229 GACGACGATGGCAACCATAC 59.072 55.000 0.00 0.00 45.26 2.39
2949 3838 0.533032 TGACGACGATGGCAACCATA 59.467 50.000 0.00 0.00 45.26 2.74
2951 3840 0.321210 AATGACGACGATGGCAACCA 60.321 50.000 0.00 0.00 38.19 3.67
2952 3841 0.096976 CAATGACGACGATGGCAACC 59.903 55.000 0.00 0.00 0.00 3.77
2953 3842 0.796312 ACAATGACGACGATGGCAAC 59.204 50.000 0.00 0.00 0.00 4.17
2954 3843 1.518325 AACAATGACGACGATGGCAA 58.482 45.000 0.00 0.00 0.00 4.52
2955 3844 2.371910 TAACAATGACGACGATGGCA 57.628 45.000 0.00 0.00 0.00 4.92
2956 3845 3.555956 AGAATAACAATGACGACGATGGC 59.444 43.478 0.00 0.00 0.00 4.40
2957 3846 5.718649 AAGAATAACAATGACGACGATGG 57.281 39.130 0.00 0.00 0.00 3.51
2958 3847 5.959527 CCAAAGAATAACAATGACGACGATG 59.040 40.000 0.00 0.00 0.00 3.84
2959 3848 5.872617 TCCAAAGAATAACAATGACGACGAT 59.127 36.000 0.00 0.00 0.00 3.73
2960 3849 5.231702 TCCAAAGAATAACAATGACGACGA 58.768 37.500 0.00 0.00 0.00 4.20
2961 3850 5.347635 TCTCCAAAGAATAACAATGACGACG 59.652 40.000 0.00 0.00 0.00 5.12
2962 3851 6.721571 TCTCCAAAGAATAACAATGACGAC 57.278 37.500 0.00 0.00 0.00 4.34
2963 3852 6.316140 CCATCTCCAAAGAATAACAATGACGA 59.684 38.462 0.00 0.00 34.49 4.20
2964 3853 6.316140 TCCATCTCCAAAGAATAACAATGACG 59.684 38.462 0.00 0.00 34.49 4.35
2967 3856 6.316140 TCGTCCATCTCCAAAGAATAACAATG 59.684 38.462 0.00 0.00 34.49 2.82
2990 3900 5.106555 ACAAACATCTGTAGGCTTTTGATCG 60.107 40.000 11.38 3.37 0.00 3.69
2998 3908 2.093973 CCTCGACAAACATCTGTAGGCT 60.094 50.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.