Multiple sequence alignment - TraesCS6D01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G283500 chr6D 100.000 3392 0 0 1 3392 390730278 390726887 0.000000e+00 6264.0
1 TraesCS6D01G283500 chr6D 92.058 2468 160 16 4 2452 390487156 390484706 0.000000e+00 3439.0
2 TraesCS6D01G283500 chr6D 92.651 1837 105 15 616 2437 390781349 390779528 0.000000e+00 2617.0
3 TraesCS6D01G283500 chr6D 91.000 400 23 6 2737 3133 390484695 390484306 8.340000e-146 527.0
4 TraesCS6D01G283500 chr6D 93.201 353 23 1 2737 3088 390779491 390779139 5.020000e-143 518.0
5 TraesCS6D01G283500 chr6D 100.000 94 0 0 3252 3345 390484266 390484173 1.250000e-39 174.0
6 TraesCS6D01G283500 chr6D 91.525 118 4 1 3252 3369 390778986 390778875 1.260000e-34 158.0
7 TraesCS6D01G283500 chr6D 100.000 38 0 0 3211 3248 390779048 390779011 1.690000e-08 71.3
8 TraesCS6D01G283500 chr6B 93.847 1609 84 6 833 2438 583723810 583725406 0.000000e+00 2409.0
9 TraesCS6D01G283500 chr6B 93.739 591 11 3 2734 3324 583725427 583725991 0.000000e+00 863.0
10 TraesCS6D01G283500 chr6B 86.432 199 13 2 613 811 583723549 583723733 4.440000e-49 206.0
11 TraesCS6D01G283500 chr6A 92.522 1618 99 9 833 2438 537020670 537019063 0.000000e+00 2298.0
12 TraesCS6D01G283500 chr6A 95.477 398 17 1 2737 3133 537019027 537018630 4.770000e-178 634.0
13 TraesCS6D01G283500 chr6A 94.231 156 3 1 3214 3369 537018649 537018500 2.040000e-57 233.0
14 TraesCS6D01G283500 chr6A 92.683 123 8 1 690 811 537020866 537020744 3.480000e-40 176.0
15 TraesCS6D01G283500 chr6A 100.000 30 0 0 809 838 537020717 537020688 4.730000e-04 56.5
16 TraesCS6D01G283500 chr5B 97.143 280 4 2 2456 2731 153901374 153901653 1.420000e-128 470.0
17 TraesCS6D01G283500 chr5B 84.553 369 43 2 194 562 526178556 526178202 1.500000e-93 353.0
18 TraesCS6D01G283500 chr5B 79.237 236 45 4 330 563 655728176 655727943 9.740000e-36 161.0
19 TraesCS6D01G283500 chr5B 94.898 98 3 2 3129 3225 292741598 292741502 5.860000e-33 152.0
20 TraesCS6D01G283500 chr5B 92.157 102 6 2 3129 3230 392344284 392344185 3.530000e-30 143.0
21 TraesCS6D01G283500 chr7B 95.833 288 7 3 2456 2738 579784606 579784319 8.580000e-126 460.0
22 TraesCS6D01G283500 chr7B 84.136 353 55 1 218 570 565202003 565202354 1.170000e-89 340.0
23 TraesCS6D01G283500 chr1B 96.113 283 7 2 2456 2734 549747713 549747995 3.080000e-125 459.0
24 TraesCS6D01G283500 chr1B 96.739 92 2 1 3129 3219 132930587 132930496 5.860000e-33 152.0
25 TraesCS6D01G283500 chr1B 92.308 104 6 2 3129 3231 177182906 177183008 2.730000e-31 147.0
26 TraesCS6D01G283500 chrUn 94.333 300 11 3 2450 2744 295156357 295156655 3.990000e-124 455.0
27 TraesCS6D01G283500 chrUn 94.333 300 11 3 2450 2744 305126550 305126252 3.990000e-124 455.0
28 TraesCS6D01G283500 chrUn 94.810 289 11 2 2454 2738 211090760 211091048 6.680000e-122 448.0
29 TraesCS6D01G283500 chr3D 95.760 283 8 1 2456 2734 93478155 93477873 1.440000e-123 453.0
30 TraesCS6D01G283500 chr1D 94.845 291 10 2 2447 2733 1358237 1357948 1.860000e-122 449.0
31 TraesCS6D01G283500 chr3B 94.810 289 11 2 2454 2738 123940937 123940649 6.680000e-122 448.0
32 TraesCS6D01G283500 chr3B 83.023 430 66 4 148 570 818908048 818907619 1.910000e-102 383.0
33 TraesCS6D01G283500 chr3B 97.753 89 2 0 3129 3217 469981123 469981035 1.630000e-33 154.0
34 TraesCS6D01G283500 chr7A 79.845 387 76 2 186 571 653702759 653702374 7.170000e-72 281.0
35 TraesCS6D01G283500 chr2B 94.118 102 4 2 3129 3229 534709853 534709753 1.630000e-33 154.0
36 TraesCS6D01G283500 chr5A 94.845 97 5 0 3129 3225 688298066 688297970 5.860000e-33 152.0
37 TraesCS6D01G283500 chr4D 93.878 98 4 2 3129 3224 47533084 47533181 2.730000e-31 147.0
38 TraesCS6D01G283500 chr2A 91.509 106 7 2 3129 3234 68521443 68521340 9.810000e-31 145.0
39 TraesCS6D01G283500 chr3A 84.672 137 21 0 434 570 628872309 628872173 1.640000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G283500 chr6D 390726887 390730278 3391 True 6264.000000 6264 100.000000 1 3392 1 chr6D.!!$R1 3391
1 TraesCS6D01G283500 chr6D 390484173 390487156 2983 True 1380.000000 3439 94.352667 4 3345 3 chr6D.!!$R2 3341
2 TraesCS6D01G283500 chr6D 390778875 390781349 2474 True 841.075000 2617 94.344250 616 3369 4 chr6D.!!$R3 2753
3 TraesCS6D01G283500 chr6B 583723549 583725991 2442 False 1159.333333 2409 91.339333 613 3324 3 chr6B.!!$F1 2711
4 TraesCS6D01G283500 chr6A 537018500 537020866 2366 True 679.500000 2298 94.982600 690 3369 5 chr6A.!!$R1 2679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.179073 ATCTACACCGCATGAGCACC 60.179 55.0 0.00 0.0 42.27 5.01 F
143 144 0.251209 GGAGGGGGTGTTGTTCTTCC 60.251 60.0 0.00 0.0 0.00 3.46 F
212 214 0.330941 TCACAATGCATAGGTGGCCA 59.669 50.0 23.52 0.0 33.45 5.36 F
1655 1734 0.721718 GCAGAATTCCTTCGTCACGG 59.278 55.0 0.65 0.0 36.45 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1876 0.467290 GCAGAAAGGTCCACCCACAA 60.467 55.000 0.0 0.0 36.42 3.33 R
1928 2007 0.673644 CATGTCACCCAGAACCGTCC 60.674 60.000 0.0 0.0 0.00 4.79 R
2024 2103 2.236893 TCAGCATCACCAGCTACAATGA 59.763 45.455 0.0 0.0 41.14 2.57 R
2532 2616 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.0 0.0 45.67 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.325355 ATCACCGGGTATCTACACCG 58.675 55.000 6.32 0.00 46.79 4.94
44 45 1.066918 CACCGGGTATCTACACCGC 59.933 63.158 6.32 0.00 45.93 5.68
45 46 1.380246 ACCGGGTATCTACACCGCA 60.380 57.895 6.32 0.00 45.93 5.69
46 47 0.757935 ACCGGGTATCTACACCGCAT 60.758 55.000 6.32 1.58 45.93 4.73
47 48 0.319555 CCGGGTATCTACACCGCATG 60.320 60.000 0.00 0.00 45.93 4.06
48 49 0.671796 CGGGTATCTACACCGCATGA 59.328 55.000 0.00 0.00 41.23 3.07
49 50 1.335964 CGGGTATCTACACCGCATGAG 60.336 57.143 0.00 0.00 41.23 2.90
50 51 1.605712 GGGTATCTACACCGCATGAGC 60.606 57.143 0.00 0.00 39.69 4.26
51 52 1.068588 GGTATCTACACCGCATGAGCA 59.931 52.381 0.00 0.00 42.27 4.26
52 53 2.128035 GTATCTACACCGCATGAGCAC 58.872 52.381 0.00 0.00 42.27 4.40
53 54 0.179073 ATCTACACCGCATGAGCACC 60.179 55.000 0.00 0.00 42.27 5.01
54 55 2.125713 TACACCGCATGAGCACCG 60.126 61.111 0.00 0.00 42.27 4.94
55 56 3.657448 TACACCGCATGAGCACCGG 62.657 63.158 0.00 0.00 46.97 5.28
91 92 1.892474 GGCTGGGTTAAAGTCAATGCA 59.108 47.619 0.00 0.00 0.00 3.96
92 93 2.094545 GGCTGGGTTAAAGTCAATGCAG 60.095 50.000 0.00 0.00 0.00 4.41
93 94 2.819608 GCTGGGTTAAAGTCAATGCAGA 59.180 45.455 0.00 0.00 0.00 4.26
94 95 3.445096 GCTGGGTTAAAGTCAATGCAGAT 59.555 43.478 0.00 0.00 0.00 2.90
95 96 4.676196 GCTGGGTTAAAGTCAATGCAGATG 60.676 45.833 0.00 0.00 0.00 2.90
96 97 3.763360 TGGGTTAAAGTCAATGCAGATGG 59.237 43.478 0.00 0.00 0.00 3.51
97 98 3.763897 GGGTTAAAGTCAATGCAGATGGT 59.236 43.478 0.00 0.00 0.00 3.55
98 99 4.380867 GGGTTAAAGTCAATGCAGATGGTG 60.381 45.833 0.00 0.00 0.00 4.17
99 100 4.380867 GGTTAAAGTCAATGCAGATGGTGG 60.381 45.833 0.00 0.00 0.00 4.61
100 101 2.592102 AAGTCAATGCAGATGGTGGT 57.408 45.000 0.00 0.00 0.00 4.16
101 102 2.592102 AGTCAATGCAGATGGTGGTT 57.408 45.000 0.00 0.00 0.00 3.67
102 103 3.719268 AGTCAATGCAGATGGTGGTTA 57.281 42.857 0.00 0.00 0.00 2.85
103 104 3.614092 AGTCAATGCAGATGGTGGTTAG 58.386 45.455 0.00 0.00 0.00 2.34
104 105 2.098117 GTCAATGCAGATGGTGGTTAGC 59.902 50.000 0.00 0.00 0.00 3.09
119 120 3.244630 TGGTTAGCGAAACACCAAGGTAT 60.245 43.478 0.00 0.00 37.66 2.73
134 135 0.623617 GGTATGGAAGGAGGGGGTGT 60.624 60.000 0.00 0.00 0.00 4.16
142 143 0.771755 AGGAGGGGGTGTTGTTCTTC 59.228 55.000 0.00 0.00 0.00 2.87
143 144 0.251209 GGAGGGGGTGTTGTTCTTCC 60.251 60.000 0.00 0.00 0.00 3.46
145 146 1.602605 GGGGGTGTTGTTCTTCCGG 60.603 63.158 0.00 0.00 0.00 5.14
203 205 0.994247 TCCCTCCACTCACAATGCAT 59.006 50.000 0.00 0.00 0.00 3.96
212 214 0.330941 TCACAATGCATAGGTGGCCA 59.669 50.000 23.52 0.00 33.45 5.36
268 270 3.914312 TCGAGAGCTACAAGTCCAAAAG 58.086 45.455 0.00 0.00 0.00 2.27
293 295 6.071952 GGTGATCCTTAAAACAAATGCTCAGA 60.072 38.462 0.00 0.00 0.00 3.27
325 327 7.536622 GTGAGTAAGATCAAGAATGTGCAAAAG 59.463 37.037 0.00 0.00 0.00 2.27
333 335 6.449698 TCAAGAATGTGCAAAAGGATTTCTC 58.550 36.000 0.00 0.00 37.28 2.87
337 339 5.796424 ATGTGCAAAAGGATTTCTCAACT 57.204 34.783 0.00 0.00 37.28 3.16
341 343 8.402798 TGTGCAAAAGGATTTCTCAACTAATA 57.597 30.769 0.00 0.00 37.28 0.98
342 344 8.855110 TGTGCAAAAGGATTTCTCAACTAATAA 58.145 29.630 0.00 0.00 37.28 1.40
376 378 2.937149 GGAGGTCAAAGATTTACCGAGC 59.063 50.000 0.00 0.00 38.37 5.03
394 396 3.929610 CGAGCTCTTTTCAGGAGTTTAGG 59.070 47.826 12.85 0.00 33.73 2.69
395 397 4.257731 GAGCTCTTTTCAGGAGTTTAGGG 58.742 47.826 6.43 0.00 33.73 3.53
397 399 4.104897 AGCTCTTTTCAGGAGTTTAGGGTT 59.895 41.667 0.00 0.00 33.73 4.11
404 406 2.062636 AGGAGTTTAGGGTTGCTTGGA 58.937 47.619 0.00 0.00 0.00 3.53
416 418 2.092291 GCTTGGATGCGACGTTCGA 61.092 57.895 10.82 0.00 43.74 3.71
417 419 1.623081 GCTTGGATGCGACGTTCGAA 61.623 55.000 10.82 0.00 43.74 3.71
425 427 3.965209 TGCGACGTTCGAAGAATAAAG 57.035 42.857 0.00 0.00 45.90 1.85
427 429 3.737266 TGCGACGTTCGAAGAATAAAGTT 59.263 39.130 0.00 0.00 45.90 2.66
429 431 4.072919 CGACGTTCGAAGAATAAAGTTGC 58.927 43.478 0.00 0.00 45.90 4.17
431 433 4.769215 ACGTTCGAAGAATAAAGTTGCAC 58.231 39.130 0.00 0.00 45.90 4.57
432 434 4.510340 ACGTTCGAAGAATAAAGTTGCACT 59.490 37.500 0.00 0.00 45.90 4.40
436 438 5.985781 TCGAAGAATAAAGTTGCACTTGTC 58.014 37.500 0.00 0.00 38.66 3.18
449 451 8.451908 AGTTGCACTTGTCTTAACTAGAAAAT 57.548 30.769 0.00 0.00 33.81 1.82
499 501 3.571401 GGCTCCATGTATCTTCCAAATGG 59.429 47.826 0.00 0.00 39.35 3.16
507 509 5.826643 TGTATCTTCCAAATGGGTTAGCTT 58.173 37.500 0.00 0.00 38.11 3.74
509 511 3.430453 TCTTCCAAATGGGTTAGCTTGG 58.570 45.455 0.00 0.00 39.80 3.61
520 522 3.118223 GGGTTAGCTTGGAGATTGCTACT 60.118 47.826 0.00 0.00 38.77 2.57
525 527 2.169352 GCTTGGAGATTGCTACTGAGGA 59.831 50.000 0.00 0.00 0.00 3.71
535 537 4.392921 TGCTACTGAGGAAGCTATGAAC 57.607 45.455 9.89 0.00 39.53 3.18
561 563 9.626045 CTTTGAATAAAGTGACAACTATTTCCC 57.374 33.333 0.00 0.00 38.75 3.97
562 564 8.934023 TTGAATAAAGTGACAACTATTTCCCT 57.066 30.769 0.00 0.00 34.77 4.20
564 566 8.792633 TGAATAAAGTGACAACTATTTCCCTTG 58.207 33.333 0.00 0.00 34.77 3.61
582 585 4.167268 CCTTGAAAAACGTTCGTTTTCCA 58.833 39.130 27.64 22.06 44.43 3.53
591 594 3.628487 ACGTTCGTTTTCCAATTCCTCAA 59.372 39.130 0.00 0.00 0.00 3.02
646 652 1.524482 GCTTCTTGCCCTCTCGGAT 59.476 57.895 0.00 0.00 35.15 4.18
729 735 1.225704 CCACCCTCTGAATCCCAGC 59.774 63.158 0.00 0.00 42.62 4.85
800 807 0.942884 GTTCGTCTTCTCGCCGGTTT 60.943 55.000 1.90 0.00 0.00 3.27
858 923 0.895530 AGTCGGATCCAAAGCTCGAA 59.104 50.000 13.41 0.00 0.00 3.71
873 938 3.947834 AGCTCGAATCATTTCCGGATTTT 59.052 39.130 4.15 0.00 35.23 1.82
887 952 2.443416 GGATTTTAACTGCCCCGAGTT 58.557 47.619 0.00 0.00 39.54 3.01
896 961 2.429930 CCCCGAGTTCCAGCACAA 59.570 61.111 0.00 0.00 0.00 3.33
985 1054 6.879458 TGGTTTCTCTTTCTTGCCTATAAGTC 59.121 38.462 0.00 0.00 0.00 3.01
1053 1131 2.359531 GCAGCTAGTTAGACATCCGACT 59.640 50.000 0.00 0.00 0.00 4.18
1203 1281 1.963338 GCTGCCACCGGATATGCTC 60.963 63.158 9.46 0.00 0.00 4.26
1284 1362 3.282745 CTGGCGCTCGGTGTACACT 62.283 63.158 24.55 0.00 0.00 3.55
1467 1545 1.358046 GATTGGCTCTTCGCATGGC 59.642 57.895 0.00 0.00 41.67 4.40
1591 1670 3.262420 CCGATCTTTGACGATGAAGGTT 58.738 45.455 0.00 0.00 0.00 3.50
1594 1673 4.032217 CGATCTTTGACGATGAAGGTTCTG 59.968 45.833 0.00 0.00 0.00 3.02
1655 1734 0.721718 GCAGAATTCCTTCGTCACGG 59.278 55.000 0.65 0.00 36.45 4.94
1659 1738 3.659089 ATTCCTTCGTCACGGGCCG 62.659 63.158 27.06 27.06 0.00 6.13
1675 1754 2.288666 GGCCGTCAATTTATGCTCTCA 58.711 47.619 0.00 0.00 0.00 3.27
1759 1838 4.641989 GCTACATTGTGGTCCTCATTCATT 59.358 41.667 0.00 0.00 0.00 2.57
1760 1839 5.126061 GCTACATTGTGGTCCTCATTCATTT 59.874 40.000 0.00 0.00 0.00 2.32
1770 1849 6.603201 TGGTCCTCATTCATTTTCCAGAATAC 59.397 38.462 0.00 0.00 33.41 1.89
1818 1897 2.359975 GGGTGGACCTTTCTGCCG 60.360 66.667 0.00 0.00 35.85 5.69
1928 2007 1.202582 CGGTCCTACTGTCACAAGGAG 59.797 57.143 0.00 0.00 40.06 3.69
2024 2103 1.986882 CAAGTTTGGAGGGAACAGCT 58.013 50.000 0.00 0.00 0.00 4.24
2246 2325 7.966753 CACCGATGATGATGGATTTATTTCATC 59.033 37.037 5.11 5.11 42.99 2.92
2460 2544 7.681939 TTGTCGAATCAATAATATAAGGCCC 57.318 36.000 0.00 0.00 0.00 5.80
2461 2545 7.016153 TGTCGAATCAATAATATAAGGCCCT 57.984 36.000 0.00 0.00 0.00 5.19
2462 2546 6.878923 TGTCGAATCAATAATATAAGGCCCTG 59.121 38.462 0.00 0.00 0.00 4.45
2463 2547 6.879458 GTCGAATCAATAATATAAGGCCCTGT 59.121 38.462 0.00 0.00 0.00 4.00
2464 2548 7.390718 GTCGAATCAATAATATAAGGCCCTGTT 59.609 37.037 0.00 0.00 0.00 3.16
2465 2549 7.942341 TCGAATCAATAATATAAGGCCCTGTTT 59.058 33.333 0.00 0.00 0.00 2.83
2466 2550 8.023128 CGAATCAATAATATAAGGCCCTGTTTG 58.977 37.037 0.00 0.00 0.00 2.93
2467 2551 7.781324 ATCAATAATATAAGGCCCTGTTTGG 57.219 36.000 0.00 0.00 0.00 3.28
2468 2552 6.678547 TCAATAATATAAGGCCCTGTTTGGT 58.321 36.000 0.00 0.00 0.00 3.67
2469 2553 7.129425 TCAATAATATAAGGCCCTGTTTGGTT 58.871 34.615 0.00 0.00 0.00 3.67
2470 2554 7.286775 TCAATAATATAAGGCCCTGTTTGGTTC 59.713 37.037 0.00 0.00 0.00 3.62
2471 2555 1.834188 ATAAGGCCCTGTTTGGTTCG 58.166 50.000 0.00 0.00 0.00 3.95
2472 2556 0.475044 TAAGGCCCTGTTTGGTTCGT 59.525 50.000 0.00 0.00 0.00 3.85
2473 2557 0.475044 AAGGCCCTGTTTGGTTCGTA 59.525 50.000 0.00 0.00 0.00 3.43
2474 2558 0.475044 AGGCCCTGTTTGGTTCGTAA 59.525 50.000 0.00 0.00 0.00 3.18
2475 2559 0.879090 GGCCCTGTTTGGTTCGTAAG 59.121 55.000 0.00 0.00 0.00 2.34
2476 2560 1.601166 GCCCTGTTTGGTTCGTAAGT 58.399 50.000 0.00 0.00 39.48 2.24
2477 2561 1.534163 GCCCTGTTTGGTTCGTAAGTC 59.466 52.381 0.00 0.00 39.48 3.01
2478 2562 2.148768 CCCTGTTTGGTTCGTAAGTCC 58.851 52.381 0.00 0.00 39.48 3.85
2479 2563 2.224450 CCCTGTTTGGTTCGTAAGTCCT 60.224 50.000 0.00 0.00 39.48 3.85
2480 2564 3.007182 CCCTGTTTGGTTCGTAAGTCCTA 59.993 47.826 0.00 0.00 39.48 2.94
2481 2565 4.243270 CCTGTTTGGTTCGTAAGTCCTAG 58.757 47.826 0.00 0.00 39.48 3.02
2482 2566 4.243270 CTGTTTGGTTCGTAAGTCCTAGG 58.757 47.826 0.82 0.82 39.48 3.02
2483 2567 3.896888 TGTTTGGTTCGTAAGTCCTAGGA 59.103 43.478 7.62 7.62 39.48 2.94
2484 2568 4.240888 GTTTGGTTCGTAAGTCCTAGGAC 58.759 47.826 31.29 31.29 44.86 3.85
2512 2596 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
2513 2597 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
2514 2598 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
2515 2599 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
2516 2600 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
2517 2601 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
2518 2602 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
2519 2603 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
2520 2604 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
2521 2605 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
2522 2606 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
2523 2607 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
2524 2608 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
2525 2609 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
2526 2610 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
2527 2611 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
2528 2612 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
2529 2613 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
2530 2614 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
2531 2615 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
2532 2616 4.567116 CCCAAGTCCCTAAAAAGTCCCTAC 60.567 50.000 0.00 0.00 0.00 3.18
2533 2617 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
2534 2618 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
2535 2619 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
2536 2620 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
2537 2621 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
2538 2622 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
2539 2623 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
2540 2624 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
2550 2634 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
2551 2635 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
2552 2636 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
2553 2637 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
2554 2638 3.435890 CCTGTTTGGTTCCTGGGACTTAA 60.436 47.826 4.84 0.00 0.00 1.85
2555 2639 3.558033 TGTTTGGTTCCTGGGACTTAAC 58.442 45.455 4.84 9.92 0.00 2.01
2556 2640 3.053544 TGTTTGGTTCCTGGGACTTAACA 60.054 43.478 16.45 16.45 0.00 2.41
2557 2641 4.149598 GTTTGGTTCCTGGGACTTAACAT 58.850 43.478 4.84 0.00 0.00 2.71
2558 2642 3.433306 TGGTTCCTGGGACTTAACATG 57.567 47.619 4.84 0.00 0.00 3.21
2559 2643 2.041081 TGGTTCCTGGGACTTAACATGG 59.959 50.000 4.84 0.00 0.00 3.66
2560 2644 2.307686 GGTTCCTGGGACTTAACATGGA 59.692 50.000 4.84 0.00 0.00 3.41
2561 2645 3.344515 GTTCCTGGGACTTAACATGGAC 58.655 50.000 0.00 0.00 0.00 4.02
2562 2646 2.915869 TCCTGGGACTTAACATGGACT 58.084 47.619 0.00 0.00 0.00 3.85
2563 2647 4.069312 TCCTGGGACTTAACATGGACTA 57.931 45.455 0.00 0.00 0.00 2.59
2564 2648 4.431378 TCCTGGGACTTAACATGGACTAA 58.569 43.478 0.00 0.00 0.00 2.24
2565 2649 4.847512 TCCTGGGACTTAACATGGACTAAA 59.152 41.667 0.00 0.00 0.00 1.85
2566 2650 5.311121 TCCTGGGACTTAACATGGACTAAAA 59.689 40.000 0.00 0.00 0.00 1.52
2567 2651 5.648092 CCTGGGACTTAACATGGACTAAAAG 59.352 44.000 0.00 0.00 0.00 2.27
2568 2652 6.442541 TGGGACTTAACATGGACTAAAAGA 57.557 37.500 0.00 0.00 0.00 2.52
2569 2653 6.235664 TGGGACTTAACATGGACTAAAAGAC 58.764 40.000 0.00 0.00 0.00 3.01
2570 2654 5.646793 GGGACTTAACATGGACTAAAAGACC 59.353 44.000 0.00 1.56 0.00 3.85
2571 2655 6.235664 GGACTTAACATGGACTAAAAGACCA 58.764 40.000 0.00 0.74 43.65 4.02
2573 2657 8.044908 GGACTTAACATGGACTAAAAGACCATA 58.955 37.037 9.96 0.00 46.31 2.74
2574 2658 9.614792 GACTTAACATGGACTAAAAGACCATAT 57.385 33.333 9.96 6.06 46.31 1.78
2575 2659 9.975218 ACTTAACATGGACTAAAAGACCATATT 57.025 29.630 9.96 8.42 46.31 1.28
2579 2663 9.747898 AACATGGACTAAAAGACCATATTACAA 57.252 29.630 9.96 0.00 46.31 2.41
2580 2664 9.174166 ACATGGACTAAAAGACCATATTACAAC 57.826 33.333 9.96 0.00 46.31 3.32
2581 2665 9.396022 CATGGACTAAAAGACCATATTACAACT 57.604 33.333 9.96 0.00 46.31 3.16
2602 2686 9.145442 ACAACTATAAGTCCTTATAAGTCCCTC 57.855 37.037 11.50 0.00 37.51 4.30
2603 2687 8.586744 CAACTATAAGTCCTTATAAGTCCCTCC 58.413 40.741 11.50 0.00 37.51 4.30
2604 2688 8.071235 ACTATAAGTCCTTATAAGTCCCTCCT 57.929 38.462 11.50 0.00 37.51 3.69
2605 2689 8.521301 ACTATAAGTCCTTATAAGTCCCTCCTT 58.479 37.037 11.50 6.34 37.51 3.36
2606 2690 5.959583 AAGTCCTTATAAGTCCCTCCTTG 57.040 43.478 11.50 0.00 0.00 3.61
2607 2691 5.222278 AGTCCTTATAAGTCCCTCCTTGA 57.778 43.478 11.50 0.00 0.00 3.02
2608 2692 5.212745 AGTCCTTATAAGTCCCTCCTTGAG 58.787 45.833 11.50 0.00 0.00 3.02
2609 2693 5.043281 AGTCCTTATAAGTCCCTCCTTGAGA 60.043 44.000 11.50 0.00 0.00 3.27
2610 2694 5.303333 GTCCTTATAAGTCCCTCCTTGAGAG 59.697 48.000 11.50 0.00 42.83 3.20
2611 2695 5.043281 TCCTTATAAGTCCCTCCTTGAGAGT 60.043 44.000 11.50 0.00 41.47 3.24
2612 2696 5.303333 CCTTATAAGTCCCTCCTTGAGAGTC 59.697 48.000 11.50 0.00 41.47 3.36
2613 2697 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
2614 2698 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
2615 2699 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
2616 2700 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
2617 2701 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
2618 2702 4.959839 AGTCCCTCCTTGAGAGTCTTATTC 59.040 45.833 0.00 0.00 41.47 1.75
2619 2703 4.100344 GTCCCTCCTTGAGAGTCTTATTCC 59.900 50.000 0.00 0.00 41.47 3.01
2620 2704 4.033709 CCCTCCTTGAGAGTCTTATTCCA 58.966 47.826 0.00 0.00 41.47 3.53
2621 2705 4.657969 CCCTCCTTGAGAGTCTTATTCCAT 59.342 45.833 0.00 0.00 41.47 3.41
2622 2706 5.841237 CCCTCCTTGAGAGTCTTATTCCATA 59.159 44.000 0.00 0.00 41.47 2.74
2623 2707 6.327626 CCCTCCTTGAGAGTCTTATTCCATAA 59.672 42.308 0.00 0.00 41.47 1.90
2624 2708 7.441017 CCTCCTTGAGAGTCTTATTCCATAAG 58.559 42.308 0.00 0.00 41.47 1.73
2625 2709 7.070571 CCTCCTTGAGAGTCTTATTCCATAAGT 59.929 40.741 0.00 0.00 41.47 2.24
2626 2710 8.012957 TCCTTGAGAGTCTTATTCCATAAGTC 57.987 38.462 0.00 0.00 42.21 3.01
2627 2711 7.070074 TCCTTGAGAGTCTTATTCCATAAGTCC 59.930 40.741 0.00 0.00 42.21 3.85
2628 2712 6.732896 TGAGAGTCTTATTCCATAAGTCCC 57.267 41.667 0.00 0.00 42.21 4.46
2629 2713 6.202331 TGAGAGTCTTATTCCATAAGTCCCA 58.798 40.000 0.00 0.00 42.21 4.37
2630 2714 6.672218 TGAGAGTCTTATTCCATAAGTCCCAA 59.328 38.462 0.00 0.00 42.21 4.12
2631 2715 7.182026 TGAGAGTCTTATTCCATAAGTCCCAAA 59.818 37.037 0.00 0.00 42.21 3.28
2632 2716 8.107196 AGAGTCTTATTCCATAAGTCCCAAAT 57.893 34.615 3.93 0.00 42.21 2.32
2633 2717 7.995488 AGAGTCTTATTCCATAAGTCCCAAATG 59.005 37.037 3.93 0.00 42.21 2.32
2634 2718 6.547510 AGTCTTATTCCATAAGTCCCAAATGC 59.452 38.462 3.93 0.00 42.21 3.56
2635 2719 5.833131 TCTTATTCCATAAGTCCCAAATGCC 59.167 40.000 3.93 0.00 42.21 4.40
2636 2720 2.452600 TCCATAAGTCCCAAATGCCC 57.547 50.000 0.00 0.00 0.00 5.36
2637 2721 1.643286 TCCATAAGTCCCAAATGCCCA 59.357 47.619 0.00 0.00 0.00 5.36
2638 2722 1.756538 CCATAAGTCCCAAATGCCCAC 59.243 52.381 0.00 0.00 0.00 4.61
2639 2723 2.624029 CCATAAGTCCCAAATGCCCACT 60.624 50.000 0.00 0.00 0.00 4.00
2640 2724 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
2641 2725 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
2642 2726 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
2643 2727 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
2644 2728 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
2645 2729 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
2646 2730 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
2647 2731 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
2648 2732 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
2649 2733 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
2650 2734 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
2651 2735 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
2652 2736 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
2653 2737 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
2654 2738 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
2655 2739 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
2656 2740 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
2657 2741 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
2658 2742 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
2659 2743 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
2660 2744 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
2661 2745 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
2662 2746 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
2663 2747 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
2664 2748 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
2665 2749 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
2666 2750 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
2667 2751 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
2668 2752 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
2669 2753 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
2670 2754 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
2671 2755 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
2672 2756 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
2673 2757 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
2674 2758 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
2675 2759 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
2676 2760 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
2677 2761 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
2678 2762 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
2679 2763 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
2680 2764 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
2681 2765 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
2682 2766 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
2683 2767 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
2684 2768 6.007703 CCTGTTTGGTTTAGATGGGACTTAA 58.992 40.000 0.00 0.00 0.00 1.85
2685 2769 6.492087 CCTGTTTGGTTTAGATGGGACTTAAA 59.508 38.462 0.00 0.00 0.00 1.52
2686 2770 7.309194 CCTGTTTGGTTTAGATGGGACTTAAAG 60.309 40.741 0.00 0.00 0.00 1.85
2687 2771 6.492087 TGTTTGGTTTAGATGGGACTTAAAGG 59.508 38.462 0.00 0.00 0.00 3.11
2688 2772 5.187621 TGGTTTAGATGGGACTTAAAGGG 57.812 43.478 0.00 0.00 0.00 3.95
2689 2773 4.853276 TGGTTTAGATGGGACTTAAAGGGA 59.147 41.667 0.00 0.00 0.00 4.20
2690 2774 5.191426 GGTTTAGATGGGACTTAAAGGGAC 58.809 45.833 0.00 0.00 0.00 4.46
2715 2799 4.579647 TTTCCCTACACCAATAAGTCCC 57.420 45.455 0.00 0.00 0.00 4.46
2716 2800 3.502051 TCCCTACACCAATAAGTCCCT 57.498 47.619 0.00 0.00 0.00 4.20
2717 2801 3.112263 TCCCTACACCAATAAGTCCCTG 58.888 50.000 0.00 0.00 0.00 4.45
2718 2802 2.844348 CCCTACACCAATAAGTCCCTGT 59.156 50.000 0.00 0.00 0.00 4.00
2719 2803 4.035112 CCCTACACCAATAAGTCCCTGTA 58.965 47.826 0.00 0.00 0.00 2.74
2720 2804 4.472108 CCCTACACCAATAAGTCCCTGTAA 59.528 45.833 0.00 0.00 0.00 2.41
2721 2805 5.425630 CCTACACCAATAAGTCCCTGTAAC 58.574 45.833 0.00 0.00 0.00 2.50
2722 2806 4.296621 ACACCAATAAGTCCCTGTAACC 57.703 45.455 0.00 0.00 0.00 2.85
2723 2807 3.653836 ACACCAATAAGTCCCTGTAACCA 59.346 43.478 0.00 0.00 0.00 3.67
2724 2808 4.105057 ACACCAATAAGTCCCTGTAACCAA 59.895 41.667 0.00 0.00 0.00 3.67
2725 2809 5.074115 CACCAATAAGTCCCTGTAACCAAA 58.926 41.667 0.00 0.00 0.00 3.28
2726 2810 5.048294 CACCAATAAGTCCCTGTAACCAAAC 60.048 44.000 0.00 0.00 0.00 2.93
2727 2811 5.074115 CCAATAAGTCCCTGTAACCAAACA 58.926 41.667 0.00 0.00 0.00 2.83
2728 2812 5.048294 CCAATAAGTCCCTGTAACCAAACAC 60.048 44.000 0.00 0.00 0.00 3.32
2729 2813 2.651382 AGTCCCTGTAACCAAACACC 57.349 50.000 0.00 0.00 0.00 4.16
2730 2814 1.144298 AGTCCCTGTAACCAAACACCC 59.856 52.381 0.00 0.00 0.00 4.61
2731 2815 1.144298 GTCCCTGTAACCAAACACCCT 59.856 52.381 0.00 0.00 0.00 4.34
2732 2816 1.422402 TCCCTGTAACCAAACACCCTC 59.578 52.381 0.00 0.00 0.00 4.30
2733 2817 1.423921 CCCTGTAACCAAACACCCTCT 59.576 52.381 0.00 0.00 0.00 3.69
2734 2818 2.640826 CCCTGTAACCAAACACCCTCTA 59.359 50.000 0.00 0.00 0.00 2.43
3177 3340 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3178 3341 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3189 3352 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
3190 3353 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
3191 3354 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
3192 3355 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
3193 3356 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
3194 3357 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
3195 3358 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
3196 3359 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
3197 3360 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
3198 3361 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
3199 3362 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
3200 3363 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
3201 3364 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
3202 3365 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
3203 3366 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
3204 3367 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
3205 3368 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
3339 3523 7.725844 CCTAAAATTAGATTATGTTCCCTGCCT 59.274 37.037 1.75 0.00 32.47 4.75
3340 3524 7.978099 AAAATTAGATTATGTTCCCTGCCTT 57.022 32.000 0.00 0.00 0.00 4.35
3341 3525 7.978099 AAATTAGATTATGTTCCCTGCCTTT 57.022 32.000 0.00 0.00 0.00 3.11
3342 3526 7.978099 AATTAGATTATGTTCCCTGCCTTTT 57.022 32.000 0.00 0.00 0.00 2.27
3343 3527 7.978099 ATTAGATTATGTTCCCTGCCTTTTT 57.022 32.000 0.00 0.00 0.00 1.94
3344 3528 5.665916 AGATTATGTTCCCTGCCTTTTTG 57.334 39.130 0.00 0.00 0.00 2.44
3360 3544 9.545611 CTGCCTTTTTGTTTTTGATATAAATGC 57.454 29.630 0.00 0.00 0.00 3.56
3375 3559 9.507329 TGATATAAATGCTCAGTATTTCCTTCC 57.493 33.333 3.71 0.00 31.08 3.46
3376 3560 9.507329 GATATAAATGCTCAGTATTTCCTTCCA 57.493 33.333 3.71 0.00 31.08 3.53
3377 3561 7.814264 ATAAATGCTCAGTATTTCCTTCCAG 57.186 36.000 3.71 0.00 31.08 3.86
3378 3562 2.991250 TGCTCAGTATTTCCTTCCAGC 58.009 47.619 0.00 0.00 0.00 4.85
3379 3563 2.305635 TGCTCAGTATTTCCTTCCAGCA 59.694 45.455 0.00 0.00 33.31 4.41
3380 3564 3.054139 TGCTCAGTATTTCCTTCCAGCAT 60.054 43.478 0.00 0.00 30.79 3.79
3381 3565 3.314635 GCTCAGTATTTCCTTCCAGCATG 59.685 47.826 0.00 0.00 0.00 4.06
3382 3566 4.521146 CTCAGTATTTCCTTCCAGCATGT 58.479 43.478 0.00 0.00 0.00 3.21
3383 3567 4.922206 TCAGTATTTCCTTCCAGCATGTT 58.078 39.130 0.00 0.00 0.00 2.71
3384 3568 5.324409 TCAGTATTTCCTTCCAGCATGTTT 58.676 37.500 0.00 0.00 0.00 2.83
3385 3569 5.774690 TCAGTATTTCCTTCCAGCATGTTTT 59.225 36.000 0.00 0.00 0.00 2.43
3386 3570 5.865552 CAGTATTTCCTTCCAGCATGTTTTG 59.134 40.000 0.00 0.00 0.00 2.44
3387 3571 4.961438 ATTTCCTTCCAGCATGTTTTGT 57.039 36.364 0.00 0.00 0.00 2.83
3388 3572 4.751767 TTTCCTTCCAGCATGTTTTGTT 57.248 36.364 0.00 0.00 0.00 2.83
3389 3573 4.751767 TTCCTTCCAGCATGTTTTGTTT 57.248 36.364 0.00 0.00 0.00 2.83
3390 3574 4.751767 TCCTTCCAGCATGTTTTGTTTT 57.248 36.364 0.00 0.00 0.00 2.43
3391 3575 5.096443 TCCTTCCAGCATGTTTTGTTTTT 57.904 34.783 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.074538 AGTCACCCTTTGTTGAATAGGCT 59.925 43.478 0.00 0.00 0.00 4.58
1 2 3.421844 AGTCACCCTTTGTTGAATAGGC 58.578 45.455 0.00 0.00 0.00 3.93
2 3 6.884295 TGATTAGTCACCCTTTGTTGAATAGG 59.116 38.462 0.00 0.00 0.00 2.57
29 30 0.671796 TCATGCGGTGTAGATACCCG 59.328 55.000 12.68 12.68 40.55 5.28
43 44 1.817099 CTTCCTCCGGTGCTCATGC 60.817 63.158 0.00 0.00 40.20 4.06
44 45 1.817099 GCTTCCTCCGGTGCTCATG 60.817 63.158 0.00 0.00 0.00 3.07
45 46 2.586792 GCTTCCTCCGGTGCTCAT 59.413 61.111 0.00 0.00 0.00 2.90
46 47 3.706373 GGCTTCCTCCGGTGCTCA 61.706 66.667 0.00 0.00 0.00 4.26
47 48 3.672295 CTGGCTTCCTCCGGTGCTC 62.672 68.421 0.00 0.00 0.00 4.26
48 49 3.710722 CTGGCTTCCTCCGGTGCT 61.711 66.667 0.00 0.00 0.00 4.40
49 50 3.254024 TTCTGGCTTCCTCCGGTGC 62.254 63.158 0.00 0.00 34.12 5.01
50 51 1.078848 CTTCTGGCTTCCTCCGGTG 60.079 63.158 0.00 0.00 34.12 4.94
51 52 0.618968 ATCTTCTGGCTTCCTCCGGT 60.619 55.000 0.00 0.00 34.12 5.28
52 53 0.179062 CATCTTCTGGCTTCCTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
53 54 0.179062 CCATCTTCTGGCTTCCTCCG 60.179 60.000 0.00 0.00 38.47 4.63
54 55 3.796764 CCATCTTCTGGCTTCCTCC 57.203 57.895 0.00 0.00 38.47 4.30
70 71 1.892474 GCATTGACTTTAACCCAGCCA 59.108 47.619 0.00 0.00 0.00 4.75
72 73 2.819608 TCTGCATTGACTTTAACCCAGC 59.180 45.455 0.00 0.00 0.00 4.85
91 92 2.423577 GTGTTTCGCTAACCACCATCT 58.576 47.619 0.00 0.00 35.81 2.90
92 93 1.467342 GGTGTTTCGCTAACCACCATC 59.533 52.381 12.12 0.00 37.62 3.51
93 94 1.202830 TGGTGTTTCGCTAACCACCAT 60.203 47.619 15.20 0.00 40.15 3.55
94 95 0.180642 TGGTGTTTCGCTAACCACCA 59.819 50.000 15.20 15.20 41.45 4.17
95 96 1.265905 CTTGGTGTTTCGCTAACCACC 59.734 52.381 10.35 10.35 43.55 4.61
96 97 1.265905 CCTTGGTGTTTCGCTAACCAC 59.734 52.381 0.00 0.00 43.55 4.16
97 98 1.134037 ACCTTGGTGTTTCGCTAACCA 60.134 47.619 0.00 0.00 42.19 3.67
98 99 1.601166 ACCTTGGTGTTTCGCTAACC 58.399 50.000 0.00 0.00 35.81 2.85
99 100 3.126343 CCATACCTTGGTGTTTCGCTAAC 59.874 47.826 2.03 0.00 40.99 2.34
100 101 3.008157 TCCATACCTTGGTGTTTCGCTAA 59.992 43.478 2.03 0.00 46.52 3.09
101 102 2.568062 TCCATACCTTGGTGTTTCGCTA 59.432 45.455 2.03 0.00 46.52 4.26
102 103 1.349688 TCCATACCTTGGTGTTTCGCT 59.650 47.619 2.03 0.00 46.52 4.93
103 104 1.816074 TCCATACCTTGGTGTTTCGC 58.184 50.000 2.03 0.00 46.52 4.70
104 105 2.747446 CCTTCCATACCTTGGTGTTTCG 59.253 50.000 2.03 0.00 46.52 3.46
119 120 0.996762 AACAACACCCCCTCCTTCCA 60.997 55.000 0.00 0.00 0.00 3.53
122 123 1.145119 GAAGAACAACACCCCCTCCTT 59.855 52.381 0.00 0.00 0.00 3.36
134 135 0.178975 ATGGTTGCCCGGAAGAACAA 60.179 50.000 0.73 0.00 0.00 2.83
143 144 2.561549 GAATGTGCCATGGTTGCCCG 62.562 60.000 14.67 0.00 0.00 6.13
145 146 0.609662 AAGAATGTGCCATGGTTGCC 59.390 50.000 14.67 0.00 0.00 4.52
157 158 2.029623 GCATGATCCTGCCAAGAATGT 58.970 47.619 11.56 0.00 36.10 2.71
197 199 0.032813 AGCTTGGCCACCTATGCATT 60.033 50.000 3.88 0.00 0.00 3.56
212 214 4.589374 AGTCCTCTAATACGCCAATAGCTT 59.411 41.667 0.00 0.00 40.39 3.74
227 229 3.497048 CGAGCCAGGATTAGAGTCCTCTA 60.497 52.174 0.00 0.00 45.51 2.43
228 230 2.751479 CGAGCCAGGATTAGAGTCCTCT 60.751 54.545 1.90 1.90 45.51 3.69
233 235 2.582052 CTCTCGAGCCAGGATTAGAGT 58.418 52.381 7.81 0.00 0.00 3.24
268 270 6.024552 TGAGCATTTGTTTTAAGGATCACC 57.975 37.500 0.00 0.00 30.44 4.02
293 295 3.357203 TCTTGATCTTACTCACCGCTCT 58.643 45.455 0.00 0.00 0.00 4.09
347 349 9.169592 CGGTAAATCTTTGACCTCCTTAATTAA 57.830 33.333 0.00 0.00 0.00 1.40
350 352 6.954232 TCGGTAAATCTTTGACCTCCTTAAT 58.046 36.000 0.00 0.00 0.00 1.40
353 355 4.833390 CTCGGTAAATCTTTGACCTCCTT 58.167 43.478 0.00 0.00 0.00 3.36
361 363 6.241207 TGAAAAGAGCTCGGTAAATCTTTG 57.759 37.500 8.37 0.00 40.23 2.77
372 374 3.929610 CCTAAACTCCTGAAAAGAGCTCG 59.070 47.826 8.37 0.00 34.56 5.03
376 378 4.216472 GCAACCCTAAACTCCTGAAAAGAG 59.784 45.833 0.00 0.00 37.39 2.85
394 396 1.852067 AACGTCGCATCCAAGCAACC 61.852 55.000 0.00 0.00 0.00 3.77
395 397 0.452784 GAACGTCGCATCCAAGCAAC 60.453 55.000 0.00 0.00 0.00 4.17
397 399 2.379634 CGAACGTCGCATCCAAGCA 61.380 57.895 0.00 0.00 31.14 3.91
404 406 3.924686 ACTTTATTCTTCGAACGTCGCAT 59.075 39.130 0.00 0.00 40.21 4.73
425 427 8.129211 ACATTTTCTAGTTAAGACAAGTGCAAC 58.871 33.333 0.00 0.00 32.51 4.17
427 429 7.801716 ACATTTTCTAGTTAAGACAAGTGCA 57.198 32.000 0.00 0.00 32.51 4.57
464 466 9.420118 AGATACATGGAGCCAAATTTTACATAA 57.580 29.630 0.00 0.00 0.00 1.90
466 468 7.902920 AGATACATGGAGCCAAATTTTACAT 57.097 32.000 0.00 0.00 0.00 2.29
474 476 4.314522 TTGGAAGATACATGGAGCCAAA 57.685 40.909 0.00 0.00 31.60 3.28
482 484 5.829924 AGCTAACCCATTTGGAAGATACATG 59.170 40.000 0.00 0.00 37.39 3.21
499 501 3.873952 CAGTAGCAATCTCCAAGCTAACC 59.126 47.826 0.00 0.00 41.96 2.85
507 509 2.169352 GCTTCCTCAGTAGCAATCTCCA 59.831 50.000 0.00 0.00 36.48 3.86
509 511 3.817709 AGCTTCCTCAGTAGCAATCTC 57.182 47.619 0.00 0.00 38.77 2.75
520 522 8.862325 TTTATTCAAAGTTCATAGCTTCCTCA 57.138 30.769 0.00 0.00 0.00 3.86
535 537 9.626045 GGGAAATAGTTGTCACTTTATTCAAAG 57.374 33.333 0.00 0.00 45.63 2.77
548 550 6.500910 ACGTTTTTCAAGGGAAATAGTTGTC 58.499 36.000 0.00 0.00 42.31 3.18
553 555 5.754778 ACGAACGTTTTTCAAGGGAAATAG 58.245 37.500 0.46 0.00 42.31 1.73
591 594 1.877443 CCGGTGGAACGTCAGATTTTT 59.123 47.619 0.00 0.00 38.12 1.94
835 900 2.517450 GCTTTGGATCCGACTCGCG 61.517 63.158 7.39 0.00 40.47 5.87
858 923 4.099419 GGGCAGTTAAAATCCGGAAATGAT 59.901 41.667 9.01 0.00 0.00 2.45
873 938 1.980052 CTGGAACTCGGGGCAGTTA 59.020 57.895 0.00 0.00 36.71 2.24
887 952 1.269448 GGAATTTCGCTTTGTGCTGGA 59.731 47.619 0.00 0.00 40.11 3.86
896 961 1.156736 CCAGACACGGAATTTCGCTT 58.843 50.000 5.91 0.00 0.00 4.68
1053 1131 5.478332 TCTGAAGATGAGAGAGCACAAACTA 59.522 40.000 0.00 0.00 0.00 2.24
1467 1545 1.137675 TCATCGGAAGTGATCAGCCAG 59.862 52.381 0.00 0.00 0.00 4.85
1594 1673 7.715249 TGGCTTCCATAACTCATACTTATGAAC 59.285 37.037 0.75 0.00 41.72 3.18
1648 1727 1.015085 TAAATTGACGGCCCGTGACG 61.015 55.000 16.53 0.00 41.37 4.35
1655 1734 2.288666 TGAGAGCATAAATTGACGGCC 58.711 47.619 0.00 0.00 0.00 6.13
1675 1754 1.194781 AGGTGGTCACGGAGCTCATT 61.195 55.000 17.19 0.00 0.00 2.57
1759 1838 7.039152 TGCAAATGAAATCTGGTATTCTGGAAA 60.039 33.333 0.00 0.00 0.00 3.13
1760 1839 6.436847 TGCAAATGAAATCTGGTATTCTGGAA 59.563 34.615 0.00 0.00 0.00 3.53
1770 1849 2.027929 TGCCCTTGCAAATGAAATCTGG 60.028 45.455 0.00 0.00 46.66 3.86
1797 1876 0.467290 GCAGAAAGGTCCACCCACAA 60.467 55.000 0.00 0.00 36.42 3.33
1818 1897 3.350219 TCTTGATAGTTCCAACCTGGC 57.650 47.619 0.00 0.00 37.47 4.85
1908 1987 1.202582 CTCCTTGTGACAGTAGGACCG 59.797 57.143 1.94 0.00 34.47 4.79
1928 2007 0.673644 CATGTCACCCAGAACCGTCC 60.674 60.000 0.00 0.00 0.00 4.79
2024 2103 2.236893 TCAGCATCACCAGCTACAATGA 59.763 45.455 0.00 0.00 41.14 2.57
2205 2284 3.637998 TCGGTGAAGTAGACACAGTTC 57.362 47.619 0.00 0.00 39.65 3.01
2278 2357 5.279256 CCCTGGTGTCGTTTTCCAAATTTAT 60.279 40.000 0.00 0.00 0.00 1.40
2438 2517 6.879458 ACAGGGCCTTATATTATTGATTCGAC 59.121 38.462 1.32 0.00 0.00 4.20
2455 2539 0.475044 TTACGAACCAAACAGGGCCT 59.525 50.000 0.00 0.00 43.89 5.19
2456 2540 0.879090 CTTACGAACCAAACAGGGCC 59.121 55.000 0.00 0.00 43.89 5.80
2457 2541 1.534163 GACTTACGAACCAAACAGGGC 59.466 52.381 0.00 0.00 43.89 5.19
2458 2542 2.148768 GGACTTACGAACCAAACAGGG 58.851 52.381 0.00 0.00 43.89 4.45
2459 2543 3.121738 AGGACTTACGAACCAAACAGG 57.878 47.619 0.00 0.00 45.67 4.00
2460 2544 4.021719 TCCTAGGACTTACGAACCAAACAG 60.022 45.833 7.62 0.00 0.00 3.16
2461 2545 3.896888 TCCTAGGACTTACGAACCAAACA 59.103 43.478 7.62 0.00 0.00 2.83
2462 2546 4.240888 GTCCTAGGACTTACGAACCAAAC 58.759 47.826 31.12 3.26 41.57 2.93
2463 2547 4.525912 GTCCTAGGACTTACGAACCAAA 57.474 45.455 31.12 0.00 41.57 3.28
2487 2571 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
2488 2572 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
2489 2573 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
2490 2574 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
2491 2575 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
2492 2576 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
2493 2577 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
2494 2578 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
2495 2579 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
2496 2580 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
2497 2581 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
2498 2582 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
2499 2583 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
2500 2584 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
2501 2585 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
2502 2586 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
2503 2587 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
2504 2588 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
2505 2589 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
2506 2590 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
2507 2591 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
2508 2592 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
2509 2593 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
2510 2594 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
2511 2595 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
2512 2596 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
2513 2597 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
2514 2598 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
2515 2599 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
2516 2600 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
2517 2601 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
2518 2602 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
2532 2616 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
2533 2617 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
2534 2618 3.053544 TGTTAAGTCCCAGGAACCAAACA 60.054 43.478 0.00 0.00 0.00 2.83
2535 2619 3.558033 TGTTAAGTCCCAGGAACCAAAC 58.442 45.455 0.00 0.00 0.00 2.93
2536 2620 3.955524 TGTTAAGTCCCAGGAACCAAA 57.044 42.857 0.00 0.00 0.00 3.28
2537 2621 3.499563 CCATGTTAAGTCCCAGGAACCAA 60.500 47.826 0.00 0.00 0.00 3.67
2538 2622 2.041081 CCATGTTAAGTCCCAGGAACCA 59.959 50.000 0.00 0.00 0.00 3.67
2539 2623 2.307686 TCCATGTTAAGTCCCAGGAACC 59.692 50.000 0.00 0.00 0.00 3.62
2540 2624 3.009143 AGTCCATGTTAAGTCCCAGGAAC 59.991 47.826 0.00 0.00 0.00 3.62
2541 2625 3.256704 AGTCCATGTTAAGTCCCAGGAA 58.743 45.455 0.00 0.00 0.00 3.36
2542 2626 2.915869 AGTCCATGTTAAGTCCCAGGA 58.084 47.619 0.00 0.00 0.00 3.86
2543 2627 4.837093 TTAGTCCATGTTAAGTCCCAGG 57.163 45.455 0.00 0.00 0.00 4.45
2544 2628 6.371825 GTCTTTTAGTCCATGTTAAGTCCCAG 59.628 42.308 0.00 0.00 0.00 4.45
2545 2629 6.235664 GTCTTTTAGTCCATGTTAAGTCCCA 58.764 40.000 0.00 0.00 0.00 4.37
2546 2630 5.646793 GGTCTTTTAGTCCATGTTAAGTCCC 59.353 44.000 0.00 0.00 0.00 4.46
2547 2631 6.235664 TGGTCTTTTAGTCCATGTTAAGTCC 58.764 40.000 0.00 0.00 28.55 3.85
2548 2632 7.923414 ATGGTCTTTTAGTCCATGTTAAGTC 57.077 36.000 4.95 0.00 41.46 3.01
2549 2633 9.975218 AATATGGTCTTTTAGTCCATGTTAAGT 57.025 29.630 13.41 0.00 42.62 2.24
2553 2637 9.747898 TTGTAATATGGTCTTTTAGTCCATGTT 57.252 29.630 15.13 15.13 42.62 2.71
2554 2638 9.174166 GTTGTAATATGGTCTTTTAGTCCATGT 57.826 33.333 13.41 6.18 42.62 3.21
2555 2639 9.396022 AGTTGTAATATGGTCTTTTAGTCCATG 57.604 33.333 13.41 0.00 42.62 3.66
2576 2660 9.145442 GAGGGACTTATAAGGACTTATAGTTGT 57.855 37.037 16.73 10.82 41.55 3.32
2577 2661 8.586744 GGAGGGACTTATAAGGACTTATAGTTG 58.413 40.741 16.73 8.56 41.55 3.16
2578 2662 8.521301 AGGAGGGACTTATAAGGACTTATAGTT 58.479 37.037 16.73 3.99 41.55 2.24
2579 2663 8.071235 AGGAGGGACTTATAAGGACTTATAGT 57.929 38.462 16.73 10.79 41.55 2.12
2580 2664 8.808092 CAAGGAGGGACTTATAAGGACTTATAG 58.192 40.741 16.73 8.50 41.55 1.31
2581 2665 8.517047 TCAAGGAGGGACTTATAAGGACTTATA 58.483 37.037 16.73 7.52 41.55 0.98
2582 2666 7.371043 TCAAGGAGGGACTTATAAGGACTTAT 58.629 38.462 16.73 9.33 41.55 1.73
2583 2667 6.748969 TCAAGGAGGGACTTATAAGGACTTA 58.251 40.000 16.73 0.00 41.55 2.24
2584 2668 5.600749 TCAAGGAGGGACTTATAAGGACTT 58.399 41.667 16.73 5.36 41.55 3.01
2585 2669 5.043281 TCTCAAGGAGGGACTTATAAGGACT 60.043 44.000 16.73 10.75 41.55 3.85
2586 2670 5.209659 TCTCAAGGAGGGACTTATAAGGAC 58.790 45.833 16.73 9.80 41.55 3.85
2587 2671 5.043281 ACTCTCAAGGAGGGACTTATAAGGA 60.043 44.000 16.73 0.57 45.83 3.36
2588 2672 5.212745 ACTCTCAAGGAGGGACTTATAAGG 58.787 45.833 16.73 0.00 45.83 2.69
2589 2673 6.133356 AGACTCTCAAGGAGGGACTTATAAG 58.867 44.000 11.05 11.05 45.83 1.73
2590 2674 6.093617 AGACTCTCAAGGAGGGACTTATAA 57.906 41.667 0.00 0.00 45.83 0.98
2591 2675 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
2592 2676 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
2593 2677 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
2594 2678 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
2595 2679 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
2596 2680 4.100344 GGAATAAGACTCTCAAGGAGGGAC 59.900 50.000 0.00 0.00 45.83 4.46
2597 2681 4.264850 TGGAATAAGACTCTCAAGGAGGGA 60.265 45.833 0.00 0.00 45.83 4.20
2598 2682 4.033709 TGGAATAAGACTCTCAAGGAGGG 58.966 47.826 0.00 0.00 45.83 4.30
2599 2683 5.885449 ATGGAATAAGACTCTCAAGGAGG 57.115 43.478 0.00 0.00 45.83 4.30
2613 2697 4.898861 GGGCATTTGGGACTTATGGAATAA 59.101 41.667 0.00 0.00 36.20 1.40
2614 2698 4.078922 TGGGCATTTGGGACTTATGGAATA 60.079 41.667 0.00 0.00 0.00 1.75
2615 2699 3.308401 GGGCATTTGGGACTTATGGAAT 58.692 45.455 0.00 0.00 0.00 3.01
2616 2700 2.043664 TGGGCATTTGGGACTTATGGAA 59.956 45.455 0.00 0.00 0.00 3.53
2617 2701 1.643286 TGGGCATTTGGGACTTATGGA 59.357 47.619 0.00 0.00 0.00 3.41
2618 2702 1.756538 GTGGGCATTTGGGACTTATGG 59.243 52.381 0.00 0.00 0.00 2.74
2619 2703 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
2620 2704 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
2621 2705 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
2622 2706 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
2623 2707 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
2624 2708 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
2625 2709 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
2626 2710 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
2627 2711 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
2628 2712 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
2629 2713 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
2630 2714 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
2631 2715 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
2632 2716 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
2633 2717 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
2634 2718 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
2635 2719 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
2636 2720 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
2637 2721 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
2638 2722 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
2639 2723 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
2640 2724 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
2641 2725 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
2642 2726 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
2643 2727 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
2644 2728 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
2645 2729 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
2646 2730 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
2647 2731 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
2648 2732 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
2649 2733 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
2650 2734 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
2651 2735 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
2652 2736 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
2654 2738 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
2655 2739 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
2656 2740 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
2657 2741 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
2658 2742 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
2659 2743 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
2660 2744 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
2661 2745 7.309194 CCTTTAAGTCCCATCTAAACCAAACAG 60.309 40.741 0.00 0.00 0.00 3.16
2662 2746 6.492087 CCTTTAAGTCCCATCTAAACCAAACA 59.508 38.462 0.00 0.00 0.00 2.83
2663 2747 6.071560 CCCTTTAAGTCCCATCTAAACCAAAC 60.072 42.308 0.00 0.00 0.00 2.93
2664 2748 6.014012 CCCTTTAAGTCCCATCTAAACCAAA 58.986 40.000 0.00 0.00 0.00 3.28
2665 2749 5.313772 TCCCTTTAAGTCCCATCTAAACCAA 59.686 40.000 0.00 0.00 0.00 3.67
2666 2750 4.853276 TCCCTTTAAGTCCCATCTAAACCA 59.147 41.667 0.00 0.00 0.00 3.67
2667 2751 5.045066 AGTCCCTTTAAGTCCCATCTAAACC 60.045 44.000 0.00 0.00 0.00 3.27
2668 2752 6.063496 AGTCCCTTTAAGTCCCATCTAAAC 57.937 41.667 0.00 0.00 0.00 2.01
2669 2753 6.713731 AAGTCCCTTTAAGTCCCATCTAAA 57.286 37.500 0.00 0.00 0.00 1.85
2670 2754 6.713731 AAAGTCCCTTTAAGTCCCATCTAA 57.286 37.500 0.00 0.00 31.35 2.10
2671 2755 6.713731 AAAAGTCCCTTTAAGTCCCATCTA 57.286 37.500 0.00 0.00 31.99 1.98
2672 2756 5.600669 AAAAGTCCCTTTAAGTCCCATCT 57.399 39.130 0.00 0.00 31.99 2.90
2692 2776 5.075344 AGGGACTTATTGGTGTAGGGAAAAA 59.925 40.000 0.00 0.00 27.25 1.94
2693 2777 4.604490 AGGGACTTATTGGTGTAGGGAAAA 59.396 41.667 0.00 0.00 27.25 2.29
2694 2778 4.018779 CAGGGACTTATTGGTGTAGGGAAA 60.019 45.833 0.00 0.00 34.60 3.13
2695 2779 3.521937 CAGGGACTTATTGGTGTAGGGAA 59.478 47.826 0.00 0.00 34.60 3.97
2696 2780 3.112263 CAGGGACTTATTGGTGTAGGGA 58.888 50.000 0.00 0.00 34.60 4.20
2697 2781 2.844348 ACAGGGACTTATTGGTGTAGGG 59.156 50.000 0.00 0.00 34.60 3.53
2698 2782 5.425630 GTTACAGGGACTTATTGGTGTAGG 58.574 45.833 0.00 0.00 34.60 3.18
2699 2783 5.046159 TGGTTACAGGGACTTATTGGTGTAG 60.046 44.000 0.00 0.00 34.60 2.74
2700 2784 4.845225 TGGTTACAGGGACTTATTGGTGTA 59.155 41.667 0.00 0.00 34.60 2.90
2701 2785 3.653836 TGGTTACAGGGACTTATTGGTGT 59.346 43.478 0.00 0.00 34.60 4.16
2702 2786 4.295141 TGGTTACAGGGACTTATTGGTG 57.705 45.455 0.00 0.00 34.60 4.17
2703 2787 5.074804 GTTTGGTTACAGGGACTTATTGGT 58.925 41.667 0.00 0.00 34.60 3.67
2704 2788 5.048294 GTGTTTGGTTACAGGGACTTATTGG 60.048 44.000 0.00 0.00 34.60 3.16
2705 2789 5.048294 GGTGTTTGGTTACAGGGACTTATTG 60.048 44.000 0.00 0.00 34.60 1.90
2706 2790 5.074804 GGTGTTTGGTTACAGGGACTTATT 58.925 41.667 0.00 0.00 34.60 1.40
2707 2791 4.507869 GGGTGTTTGGTTACAGGGACTTAT 60.508 45.833 0.00 0.00 34.60 1.73
2708 2792 3.181441 GGGTGTTTGGTTACAGGGACTTA 60.181 47.826 0.00 0.00 34.60 2.24
2709 2793 2.423803 GGGTGTTTGGTTACAGGGACTT 60.424 50.000 0.00 0.00 34.60 3.01
2710 2794 1.144298 GGGTGTTTGGTTACAGGGACT 59.856 52.381 0.00 0.00 43.88 3.85
2711 2795 1.144298 AGGGTGTTTGGTTACAGGGAC 59.856 52.381 0.00 0.00 0.00 4.46
2712 2796 1.422402 GAGGGTGTTTGGTTACAGGGA 59.578 52.381 0.00 0.00 0.00 4.20
2713 2797 1.423921 AGAGGGTGTTTGGTTACAGGG 59.576 52.381 0.00 0.00 0.00 4.45
2714 2798 2.951229 AGAGGGTGTTTGGTTACAGG 57.049 50.000 0.00 0.00 0.00 4.00
2715 2799 9.847224 ATATATTTAGAGGGTGTTTGGTTACAG 57.153 33.333 0.00 0.00 0.00 2.74
3177 3340 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
3178 3341 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
3179 3342 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
3180 3343 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
3181 3344 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
3182 3345 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
3183 3346 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
3184 3347 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
3185 3348 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
3186 3349 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
3187 3350 4.024472 ACAAACAACAACAACAACAAAGCC 60.024 37.500 0.00 0.00 0.00 4.35
3188 3351 5.089396 ACAAACAACAACAACAACAAAGC 57.911 34.783 0.00 0.00 0.00 3.51
3189 3352 6.422400 AGGTACAAACAACAACAACAACAAAG 59.578 34.615 0.00 0.00 0.00 2.77
3190 3353 6.281405 AGGTACAAACAACAACAACAACAAA 58.719 32.000 0.00 0.00 0.00 2.83
3191 3354 5.844004 AGGTACAAACAACAACAACAACAA 58.156 33.333 0.00 0.00 0.00 2.83
3192 3355 5.455056 AGGTACAAACAACAACAACAACA 57.545 34.783 0.00 0.00 0.00 3.33
3193 3356 6.772770 AAAGGTACAAACAACAACAACAAC 57.227 33.333 0.00 0.00 0.00 3.32
3194 3357 7.599245 CCTAAAAGGTACAAACAACAACAACAA 59.401 33.333 0.00 0.00 0.00 2.83
3195 3358 7.039923 TCCTAAAAGGTACAAACAACAACAACA 60.040 33.333 0.00 0.00 36.53 3.33
3196 3359 7.314393 TCCTAAAAGGTACAAACAACAACAAC 58.686 34.615 0.00 0.00 36.53 3.32
3197 3360 7.463961 TCCTAAAAGGTACAAACAACAACAA 57.536 32.000 0.00 0.00 36.53 2.83
3198 3361 7.648039 ATCCTAAAAGGTACAAACAACAACA 57.352 32.000 0.00 0.00 36.53 3.33
3199 3362 8.936070 AAATCCTAAAAGGTACAAACAACAAC 57.064 30.769 0.00 0.00 36.53 3.32
3360 3544 4.521146 ACATGCTGGAAGGAAATACTGAG 58.479 43.478 0.00 0.00 38.32 3.35
3369 3553 4.751767 AAAACAAAACATGCTGGAAGGA 57.248 36.364 0.00 0.00 40.11 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.