Multiple sequence alignment - TraesCS6D01G282600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G282600 chr6D 100.000 5155 0 0 1 5155 389970279 389975433 0.000000e+00 9520.0
1 TraesCS6D01G282600 chr6D 87.437 199 17 3 3223 3421 445766140 445765950 6.720000e-54 222.0
2 TraesCS6D01G282600 chr6A 91.802 1842 95 21 2145 3957 536252653 536254467 0.000000e+00 2514.0
3 TraesCS6D01G282600 chr6A 92.222 720 38 10 895 1600 536251476 536252191 0.000000e+00 1003.0
4 TraesCS6D01G282600 chr6A 83.882 881 72 34 4312 5155 536254821 536255668 0.000000e+00 776.0
5 TraesCS6D01G282600 chr6A 91.989 362 11 3 4000 4352 536254466 536254818 4.640000e-135 492.0
6 TraesCS6D01G282600 chr6A 78.378 111 13 5 85 192 558992969 558992867 1.550000e-05 62.1
7 TraesCS6D01G282600 chr6B 91.898 938 60 7 1938 2871 583613125 583614050 0.000000e+00 1297.0
8 TraesCS6D01G282600 chr6B 92.201 718 43 10 893 1603 583612110 583612821 0.000000e+00 1003.0
9 TraesCS6D01G282600 chr6B 94.424 538 20 4 3648 4177 583614554 583615089 0.000000e+00 819.0
10 TraesCS6D01G282600 chr6B 90.681 558 25 17 4602 5155 584310862 584310328 0.000000e+00 717.0
11 TraesCS6D01G282600 chr6B 89.614 337 19 7 2887 3223 583614161 583614481 1.030000e-111 414.0
12 TraesCS6D01G282600 chr6B 80.952 441 35 16 4199 4623 584311357 584310950 2.330000e-78 303.0
13 TraesCS6D01G282600 chr6B 86.441 236 21 6 3223 3457 672366444 672366219 1.110000e-61 248.0
14 TraesCS6D01G282600 chr2D 92.659 899 36 5 1 898 498318939 498318070 0.000000e+00 1267.0
15 TraesCS6D01G282600 chr2D 77.778 198 37 6 658 849 459315992 459315796 1.170000e-21 115.0
16 TraesCS6D01G282600 chr2A 95.789 475 19 1 1 475 181837086 181836613 0.000000e+00 765.0
17 TraesCS6D01G282600 chr2A 92.701 411 28 2 484 894 181815407 181814999 4.450000e-165 592.0
18 TraesCS6D01G282600 chr7B 88.756 587 53 12 324 907 135982278 135981702 0.000000e+00 706.0
19 TraesCS6D01G282600 chr7B 92.331 326 20 3 1 325 135982694 135982373 4.700000e-125 459.0
20 TraesCS6D01G282600 chr3B 86.806 576 47 8 324 872 66472903 66473476 2.640000e-172 616.0
21 TraesCS6D01G282600 chr3B 92.923 325 23 0 1 325 66472537 66472861 1.680000e-129 473.0
22 TraesCS6D01G282600 chr3B 93.103 116 8 0 3306 3421 812340196 812340311 2.470000e-38 171.0
23 TraesCS6D01G282600 chr3B 79.412 238 43 6 615 849 237112993 237112759 4.130000e-36 163.0
24 TraesCS6D01G282600 chr2B 85.366 574 47 20 324 894 604325096 604324557 1.250000e-155 560.0
25 TraesCS6D01G282600 chr2B 94.462 325 18 0 1 325 604325566 604325242 7.710000e-138 501.0
26 TraesCS6D01G282600 chr2B 87.202 336 37 4 555 890 604324422 604324093 1.350000e-100 377.0
27 TraesCS6D01G282600 chr5A 88.811 286 25 6 1 281 324467041 324466758 1.370000e-90 344.0
28 TraesCS6D01G282600 chr5A 91.000 200 15 3 79 276 469132221 469132023 3.060000e-67 267.0
29 TraesCS6D01G282600 chr5A 85.128 195 27 1 3226 3420 330196273 330196081 1.130000e-46 198.0
30 TraesCS6D01G282600 chr3A 89.140 221 22 1 3225 3445 455780260 455780042 1.830000e-69 274.0
31 TraesCS6D01G282600 chr3A 89.950 199 17 2 3226 3421 182637175 182637373 2.380000e-63 254.0
32 TraesCS6D01G282600 chr3A 91.057 123 11 0 3306 3428 734786096 734786218 3.190000e-37 167.0
33 TraesCS6D01G282600 chr7A 91.195 159 12 1 1219 1375 137763680 137763838 1.120000e-51 215.0
34 TraesCS6D01G282600 chr7D 92.908 141 10 0 1235 1375 137555468 137555608 6.770000e-49 206.0
35 TraesCS6D01G282600 chr7D 80.000 205 35 6 693 894 25280062 25279861 4.160000e-31 147.0
36 TraesCS6D01G282600 chr5D 83.249 197 30 3 3226 3421 242123599 242123793 1.470000e-40 178.0
37 TraesCS6D01G282600 chr3D 87.603 121 13 1 3225 3345 337952838 337952720 6.960000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G282600 chr6D 389970279 389975433 5154 False 9520.000000 9520 100.00000 1 5155 1 chr6D.!!$F1 5154
1 TraesCS6D01G282600 chr6A 536251476 536255668 4192 False 1196.250000 2514 89.97375 895 5155 4 chr6A.!!$F1 4260
2 TraesCS6D01G282600 chr6B 583612110 583615089 2979 False 883.250000 1297 92.03425 893 4177 4 chr6B.!!$F1 3284
3 TraesCS6D01G282600 chr6B 584310328 584311357 1029 True 510.000000 717 85.81650 4199 5155 2 chr6B.!!$R2 956
4 TraesCS6D01G282600 chr2D 498318070 498318939 869 True 1267.000000 1267 92.65900 1 898 1 chr2D.!!$R2 897
5 TraesCS6D01G282600 chr7B 135981702 135982694 992 True 582.500000 706 90.54350 1 907 2 chr7B.!!$R1 906
6 TraesCS6D01G282600 chr3B 66472537 66473476 939 False 544.500000 616 89.86450 1 872 2 chr3B.!!$F2 871
7 TraesCS6D01G282600 chr2B 604324093 604325566 1473 True 479.333333 560 89.01000 1 894 3 chr2B.!!$R1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 1197 0.937304 CGATACTTGGCGTCCCATTG 59.063 55.0 0.00 0.0 41.78 2.82 F
1473 2085 0.251033 TCTGTTGCTCTTGCTGCCAT 60.251 50.0 0.00 0.0 40.48 4.40 F
1639 2263 0.035317 TGACACATGACTGCTGTCCC 59.965 55.0 19.64 0.0 42.28 4.46 F
1685 2309 0.036105 ACTGCTGCATCATTCGGACA 60.036 50.0 1.31 0.0 0.00 4.02 F
2224 2915 0.040204 AGCCCCCAGAAACAATCAGG 59.960 55.0 0.00 0.0 34.56 3.86 F
3280 4129 0.447801 GCATGACAAATCGAACGCCT 59.552 50.0 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 2244 0.035317 GGGACAGCAGTCATGTGTCA 59.965 55.000 11.67 0.0 46.80 3.58 R
2981 3781 0.034476 CTGGCTCAGCACAGAGTTCA 59.966 55.000 8.98 0.0 37.94 3.18 R
3302 4151 1.106285 AAGGAAATTGCCATCCTCGC 58.894 50.000 4.92 0.0 45.33 5.03 R
3303 4152 4.157656 TGTTAAAGGAAATTGCCATCCTCG 59.842 41.667 4.92 0.0 45.33 4.63 R
3983 4841 0.698238 CAGTCCCACCAGATTCCCAA 59.302 55.000 0.00 0.0 0.00 4.12 R
5127 6206 0.400670 CTAAAGAGGGGAGGAGGGGG 60.401 65.000 0.00 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
422 573 3.022406 GGTAGTGGGTAGGTCTGTACTG 58.978 54.545 0.00 0.00 0.00 2.74
465 616 4.124851 ACCTGACGGTCTCAATACATTC 57.875 45.455 9.88 0.00 40.27 2.67
600 1197 0.937304 CGATACTTGGCGTCCCATTG 59.063 55.000 0.00 0.00 41.78 2.82
732 1332 2.501128 GACTAGCGCCATCAGCCA 59.499 61.111 2.29 0.00 38.78 4.75
812 1412 3.818387 CACGCTCGAGTCAAGTTAAGTA 58.182 45.455 15.13 0.00 0.00 2.24
820 1420 6.220930 TCGAGTCAAGTTAAGTAACTGCAAT 58.779 36.000 4.52 0.00 45.17 3.56
823 1423 7.095607 CGAGTCAAGTTAAGTAACTGCAATTCT 60.096 37.037 4.52 0.00 45.17 2.40
861 1461 8.403236 GTTCTAACACCAAACTAAACATTGAGT 58.597 33.333 0.00 0.00 0.00 3.41
862 1462 9.616156 TTCTAACACCAAACTAAACATTGAGTA 57.384 29.630 0.00 0.00 0.00 2.59
863 1463 9.616156 TCTAACACCAAACTAAACATTGAGTAA 57.384 29.630 0.00 0.00 0.00 2.24
1016 1616 1.978580 TCTGTTTGTCTTCTCCCTCCC 59.021 52.381 0.00 0.00 0.00 4.30
1022 1622 2.692741 CTTCTCCCTCCCCCACCC 60.693 72.222 0.00 0.00 0.00 4.61
1023 1623 3.216371 TTCTCCCTCCCCCACCCT 61.216 66.667 0.00 0.00 0.00 4.34
1138 1741 2.690778 GCCGATTTGCGTGGCTTCT 61.691 57.895 0.00 0.00 45.40 2.85
1193 1796 2.812619 GGCCTCTCGGATCTTGGGG 61.813 68.421 0.00 0.00 0.00 4.96
1210 1820 2.035783 GGGAAGAAGGTGGGTGGC 59.964 66.667 0.00 0.00 0.00 5.01
1429 2040 0.449388 CCTGATCCGCTTGCTTGAAC 59.551 55.000 0.00 0.00 0.00 3.18
1459 2071 1.237285 AAAAGATGCGCGCCTCTGTT 61.237 50.000 34.23 31.58 0.00 3.16
1473 2085 0.251033 TCTGTTGCTCTTGCTGCCAT 60.251 50.000 0.00 0.00 40.48 4.40
1475 2087 1.214589 GTTGCTCTTGCTGCCATGG 59.785 57.895 7.63 7.63 40.48 3.66
1486 2105 2.440247 GCCATGGAGTTTCGGGGG 60.440 66.667 18.40 0.00 0.00 5.40
1500 2119 1.968493 TCGGGGGTCATGTATAGCTTC 59.032 52.381 0.00 0.00 0.00 3.86
1548 2172 2.255316 GCTCGTGCAGTTCTAGTCTTC 58.745 52.381 4.26 0.00 39.41 2.87
1549 2173 2.510874 CTCGTGCAGTTCTAGTCTTCG 58.489 52.381 0.00 0.00 0.00 3.79
1552 2176 2.350484 CGTGCAGTTCTAGTCTTCGTCA 60.350 50.000 0.00 0.00 0.00 4.35
1564 2188 1.409064 TCTTCGTCAGCGGCAGATAAT 59.591 47.619 1.45 0.00 38.89 1.28
1569 2193 2.863740 CGTCAGCGGCAGATAATTGTTA 59.136 45.455 1.45 0.00 0.00 2.41
1570 2194 3.302480 CGTCAGCGGCAGATAATTGTTAC 60.302 47.826 1.45 0.00 0.00 2.50
1585 2209 3.222173 TGTTACTGGTGTGCCTGATTT 57.778 42.857 0.00 0.00 37.43 2.17
1586 2210 3.561143 TGTTACTGGTGTGCCTGATTTT 58.439 40.909 0.00 0.00 37.43 1.82
1587 2211 3.568007 TGTTACTGGTGTGCCTGATTTTC 59.432 43.478 0.00 0.00 37.43 2.29
1590 2214 2.887152 ACTGGTGTGCCTGATTTTCTTC 59.113 45.455 0.00 0.00 37.43 2.87
1601 2225 6.206243 TGCCTGATTTTCTTCTTCTTCTCTTG 59.794 38.462 0.00 0.00 0.00 3.02
1602 2226 6.429385 GCCTGATTTTCTTCTTCTTCTCTTGA 59.571 38.462 0.00 0.00 0.00 3.02
1603 2227 7.121020 GCCTGATTTTCTTCTTCTTCTCTTGAT 59.879 37.037 0.00 0.00 0.00 2.57
1604 2228 8.452534 CCTGATTTTCTTCTTCTTCTCTTGATG 58.547 37.037 0.00 0.00 0.00 3.07
1605 2229 7.814642 TGATTTTCTTCTTCTTCTCTTGATGC 58.185 34.615 0.00 0.00 0.00 3.91
1606 2230 5.852738 TTTCTTCTTCTTCTCTTGATGCG 57.147 39.130 0.00 0.00 0.00 4.73
1607 2231 4.527509 TCTTCTTCTTCTCTTGATGCGT 57.472 40.909 0.00 0.00 0.00 5.24
1608 2232 5.644977 TCTTCTTCTTCTCTTGATGCGTA 57.355 39.130 0.00 0.00 0.00 4.42
1609 2233 5.403246 TCTTCTTCTTCTCTTGATGCGTAC 58.597 41.667 0.00 0.00 0.00 3.67
1610 2234 4.111375 TCTTCTTCTCTTGATGCGTACC 57.889 45.455 0.00 0.00 0.00 3.34
1611 2235 3.764434 TCTTCTTCTCTTGATGCGTACCT 59.236 43.478 0.00 0.00 0.00 3.08
1612 2236 4.220821 TCTTCTTCTCTTGATGCGTACCTT 59.779 41.667 0.00 0.00 0.00 3.50
1613 2237 3.849911 TCTTCTCTTGATGCGTACCTTG 58.150 45.455 0.00 0.00 0.00 3.61
1614 2238 2.672961 TCTCTTGATGCGTACCTTGG 57.327 50.000 0.00 0.00 0.00 3.61
1615 2239 1.009829 CTCTTGATGCGTACCTTGGC 58.990 55.000 0.00 0.00 0.00 4.52
1616 2240 0.392461 TCTTGATGCGTACCTTGGCC 60.392 55.000 0.00 0.00 0.00 5.36
1617 2241 1.705337 CTTGATGCGTACCTTGGCCG 61.705 60.000 0.00 0.00 0.00 6.13
1618 2242 2.173758 TTGATGCGTACCTTGGCCGA 62.174 55.000 0.00 0.00 0.00 5.54
1619 2243 1.227556 GATGCGTACCTTGGCCGAT 60.228 57.895 0.00 0.00 0.00 4.18
1620 2244 0.814010 GATGCGTACCTTGGCCGATT 60.814 55.000 0.00 0.00 0.00 3.34
1621 2245 1.095228 ATGCGTACCTTGGCCGATTG 61.095 55.000 0.00 0.00 0.00 2.67
1622 2246 1.448893 GCGTACCTTGGCCGATTGA 60.449 57.895 0.00 0.00 0.00 2.57
1623 2247 1.702491 GCGTACCTTGGCCGATTGAC 61.702 60.000 0.00 0.00 0.00 3.18
1624 2248 0.390603 CGTACCTTGGCCGATTGACA 60.391 55.000 0.00 0.00 0.00 3.58
1625 2249 1.084289 GTACCTTGGCCGATTGACAC 58.916 55.000 0.00 0.00 0.00 3.67
1626 2250 0.687920 TACCTTGGCCGATTGACACA 59.312 50.000 0.00 0.00 0.00 3.72
1627 2251 0.038166 ACCTTGGCCGATTGACACAT 59.962 50.000 0.00 0.00 0.00 3.21
1628 2252 0.452987 CCTTGGCCGATTGACACATG 59.547 55.000 0.00 0.00 0.00 3.21
1629 2253 1.452110 CTTGGCCGATTGACACATGA 58.548 50.000 0.00 0.00 0.00 3.07
1630 2254 1.131126 CTTGGCCGATTGACACATGAC 59.869 52.381 0.00 0.00 0.00 3.06
1631 2255 0.324614 TGGCCGATTGACACATGACT 59.675 50.000 0.00 0.00 0.00 3.41
1632 2256 0.729116 GGCCGATTGACACATGACTG 59.271 55.000 0.00 0.00 0.00 3.51
1633 2257 0.097674 GCCGATTGACACATGACTGC 59.902 55.000 0.00 0.00 0.00 4.40
1634 2258 1.730501 CCGATTGACACATGACTGCT 58.269 50.000 0.00 0.00 0.00 4.24
1635 2259 1.395954 CCGATTGACACATGACTGCTG 59.604 52.381 0.00 0.00 0.00 4.41
1636 2260 2.071540 CGATTGACACATGACTGCTGT 58.928 47.619 0.00 0.00 0.00 4.40
1637 2261 2.093310 CGATTGACACATGACTGCTGTC 59.907 50.000 16.18 16.18 43.20 3.51
1638 2262 1.882912 TTGACACATGACTGCTGTCC 58.117 50.000 19.64 5.09 42.28 4.02
1639 2263 0.035317 TGACACATGACTGCTGTCCC 59.965 55.000 19.64 0.00 42.28 4.46
1640 2264 0.674895 GACACATGACTGCTGTCCCC 60.675 60.000 19.64 0.00 42.28 4.81
1641 2265 1.130054 ACACATGACTGCTGTCCCCT 61.130 55.000 19.64 3.41 42.28 4.79
1642 2266 0.392193 CACATGACTGCTGTCCCCTC 60.392 60.000 19.64 0.00 42.28 4.30
1643 2267 0.837691 ACATGACTGCTGTCCCCTCA 60.838 55.000 19.64 3.11 42.28 3.86
1644 2268 0.325933 CATGACTGCTGTCCCCTCAA 59.674 55.000 19.64 1.76 42.28 3.02
1645 2269 1.067295 ATGACTGCTGTCCCCTCAAA 58.933 50.000 19.64 1.05 42.28 2.69
1646 2270 0.843309 TGACTGCTGTCCCCTCAAAA 59.157 50.000 19.64 0.00 42.28 2.44
1647 2271 1.214175 TGACTGCTGTCCCCTCAAAAA 59.786 47.619 19.64 0.00 42.28 1.94
1680 2304 2.422479 ACACATGACTGCTGCATCATTC 59.578 45.455 18.49 1.27 33.18 2.67
1681 2305 1.669265 ACATGACTGCTGCATCATTCG 59.331 47.619 18.49 13.44 33.18 3.34
1682 2306 1.002792 CATGACTGCTGCATCATTCGG 60.003 52.381 18.49 9.18 33.18 4.30
1683 2307 0.249955 TGACTGCTGCATCATTCGGA 59.750 50.000 1.31 0.00 0.00 4.55
1685 2309 0.036105 ACTGCTGCATCATTCGGACA 60.036 50.000 1.31 0.00 0.00 4.02
1686 2310 0.656259 CTGCTGCATCATTCGGACAG 59.344 55.000 1.31 0.00 0.00 3.51
1688 2312 0.376152 GCTGCATCATTCGGACAGTG 59.624 55.000 0.00 0.00 0.00 3.66
1689 2313 2.008543 GCTGCATCATTCGGACAGTGA 61.009 52.381 0.00 0.00 0.00 3.41
1690 2314 2.349590 CTGCATCATTCGGACAGTGAA 58.650 47.619 0.00 0.00 0.00 3.18
1691 2315 2.941064 CTGCATCATTCGGACAGTGAAT 59.059 45.455 0.00 0.00 36.52 2.57
1692 2316 4.122046 CTGCATCATTCGGACAGTGAATA 58.878 43.478 0.00 0.00 34.41 1.75
1693 2317 4.707105 TGCATCATTCGGACAGTGAATAT 58.293 39.130 0.00 0.00 34.41 1.28
1694 2318 5.125356 TGCATCATTCGGACAGTGAATATT 58.875 37.500 0.00 0.00 34.41 1.28
1697 2321 3.876914 TCATTCGGACAGTGAATATTGCC 59.123 43.478 0.00 0.00 34.41 4.52
1699 2323 3.627395 TCGGACAGTGAATATTGCCTT 57.373 42.857 0.00 0.00 0.00 4.35
1700 2324 3.950397 TCGGACAGTGAATATTGCCTTT 58.050 40.909 0.00 0.00 0.00 3.11
1702 2326 5.116180 TCGGACAGTGAATATTGCCTTTAG 58.884 41.667 0.00 0.00 0.00 1.85
1704 2328 5.584649 CGGACAGTGAATATTGCCTTTAGAA 59.415 40.000 0.00 0.00 0.00 2.10
1706 2330 7.361713 CGGACAGTGAATATTGCCTTTAGAAAA 60.362 37.037 0.00 0.00 0.00 2.29
1708 2332 7.602753 ACAGTGAATATTGCCTTTAGAAAACC 58.397 34.615 0.00 0.00 0.00 3.27
1710 2334 7.970614 CAGTGAATATTGCCTTTAGAAAACCTC 59.029 37.037 0.00 0.00 0.00 3.85
1711 2335 7.890655 AGTGAATATTGCCTTTAGAAAACCTCT 59.109 33.333 0.00 0.00 38.28 3.69
1712 2336 8.184848 GTGAATATTGCCTTTAGAAAACCTCTC 58.815 37.037 0.00 0.00 35.41 3.20
1714 2338 5.966742 ATTGCCTTTAGAAAACCTCTCAC 57.033 39.130 0.00 0.00 35.41 3.51
1715 2339 3.399330 TGCCTTTAGAAAACCTCTCACG 58.601 45.455 0.00 0.00 35.41 4.35
1716 2340 2.742589 GCCTTTAGAAAACCTCTCACGG 59.257 50.000 0.00 0.00 35.41 4.94
1718 2342 2.467566 TTAGAAAACCTCTCACGGGC 57.532 50.000 0.00 0.00 35.41 6.13
1719 2343 1.344065 TAGAAAACCTCTCACGGGCA 58.656 50.000 0.00 0.00 35.41 5.36
1767 2436 1.651987 ACGGACAGTGAATATTGCCG 58.348 50.000 0.00 0.00 38.32 5.69
1770 2439 2.285220 CGGACAGTGAATATTGCCGAAG 59.715 50.000 0.00 0.00 36.26 3.79
1771 2440 2.032178 GGACAGTGAATATTGCCGAAGC 59.968 50.000 0.00 0.00 40.48 3.86
1787 2476 1.949525 GAAGCACTCTTGTGGCAGAAA 59.050 47.619 0.00 0.00 43.97 2.52
1788 2477 1.602311 AGCACTCTTGTGGCAGAAAG 58.398 50.000 0.00 0.95 43.97 2.62
1789 2478 1.141657 AGCACTCTTGTGGCAGAAAGA 59.858 47.619 11.04 11.04 43.97 2.52
1790 2479 1.949525 GCACTCTTGTGGCAGAAAGAA 59.050 47.619 12.25 0.00 43.97 2.52
1791 2480 2.287248 GCACTCTTGTGGCAGAAAGAAC 60.287 50.000 12.25 3.82 43.97 3.01
1792 2481 3.209410 CACTCTTGTGGCAGAAAGAACT 58.791 45.455 12.25 0.82 40.33 3.01
1793 2482 3.249559 CACTCTTGTGGCAGAAAGAACTC 59.750 47.826 12.25 0.00 40.33 3.01
1794 2483 2.810852 CTCTTGTGGCAGAAAGAACTCC 59.189 50.000 12.25 0.00 32.23 3.85
1795 2484 2.439507 TCTTGTGGCAGAAAGAACTCCT 59.560 45.455 9.50 0.00 29.59 3.69
1796 2485 3.646162 TCTTGTGGCAGAAAGAACTCCTA 59.354 43.478 9.50 0.00 29.59 2.94
1797 2486 4.102524 TCTTGTGGCAGAAAGAACTCCTAA 59.897 41.667 9.50 0.00 29.59 2.69
1802 2491 5.180304 GTGGCAGAAAGAACTCCTAAAAGAG 59.820 44.000 0.00 0.00 39.91 2.85
1808 2497 9.003658 CAGAAAGAACTCCTAAAAGAGCATTTA 57.996 33.333 0.00 0.00 37.39 1.40
1818 2507 8.153550 TCCTAAAAGAGCATTTATTTTTGGCAA 58.846 29.630 0.00 0.00 38.14 4.52
1835 2524 2.736192 GGCAACAATCCGTTTGATTTGG 59.264 45.455 2.68 0.00 41.85 3.28
1844 2533 6.780457 ATCCGTTTGATTTGGATCAGAAAT 57.220 33.333 0.00 0.00 42.90 2.17
1845 2534 6.588719 TCCGTTTGATTTGGATCAGAAATT 57.411 33.333 0.00 0.00 42.90 1.82
1873 2562 4.177537 TGAATGAAGGGACAAACAAGGA 57.822 40.909 0.00 0.00 0.00 3.36
1874 2563 3.888930 TGAATGAAGGGACAAACAAGGAC 59.111 43.478 0.00 0.00 0.00 3.85
1876 2565 1.850345 TGAAGGGACAAACAAGGACCT 59.150 47.619 0.00 0.00 0.00 3.85
1877 2566 2.158667 TGAAGGGACAAACAAGGACCTC 60.159 50.000 0.00 0.00 0.00 3.85
1878 2567 1.821088 AGGGACAAACAAGGACCTCT 58.179 50.000 0.00 0.00 0.00 3.69
1879 2568 1.421646 AGGGACAAACAAGGACCTCTG 59.578 52.381 0.00 0.00 0.00 3.35
1880 2569 1.143073 GGGACAAACAAGGACCTCTGT 59.857 52.381 0.00 0.00 0.00 3.41
1881 2570 2.495084 GGACAAACAAGGACCTCTGTC 58.505 52.381 13.67 13.67 40.98 3.51
1882 2571 2.104963 GGACAAACAAGGACCTCTGTCT 59.895 50.000 18.25 2.76 41.47 3.41
1886 2575 2.407340 ACAAGGACCTCTGTCTTCCT 57.593 50.000 0.00 0.00 41.84 3.36
1887 2576 3.544698 ACAAGGACCTCTGTCTTCCTA 57.455 47.619 0.00 0.00 38.93 2.94
1888 2577 3.858135 ACAAGGACCTCTGTCTTCCTAA 58.142 45.455 0.00 0.00 38.93 2.69
1889 2578 4.232091 ACAAGGACCTCTGTCTTCCTAAA 58.768 43.478 0.00 0.00 38.93 1.85
1890 2579 4.040584 ACAAGGACCTCTGTCTTCCTAAAC 59.959 45.833 0.00 0.00 38.93 2.01
1891 2580 4.134933 AGGACCTCTGTCTTCCTAAACT 57.865 45.455 0.00 0.00 41.47 2.66
1892 2581 4.494591 AGGACCTCTGTCTTCCTAAACTT 58.505 43.478 0.00 0.00 41.47 2.66
1893 2582 4.908481 AGGACCTCTGTCTTCCTAAACTTT 59.092 41.667 0.00 0.00 41.47 2.66
1899 2588 7.455008 ACCTCTGTCTTCCTAAACTTTCTATGA 59.545 37.037 0.00 0.00 0.00 2.15
1905 2594 8.027771 GTCTTCCTAAACTTTCTATGAAGACGA 58.972 37.037 12.11 0.00 43.91 4.20
1923 2612 4.228912 ACGAAGTGAAAAATGGCAAGAG 57.771 40.909 0.00 0.00 42.51 2.85
1924 2613 3.882888 ACGAAGTGAAAAATGGCAAGAGA 59.117 39.130 0.00 0.00 42.51 3.10
1925 2614 4.520492 ACGAAGTGAAAAATGGCAAGAGAT 59.480 37.500 0.00 0.00 42.51 2.75
1926 2615 5.091431 CGAAGTGAAAAATGGCAAGAGATC 58.909 41.667 0.00 0.00 0.00 2.75
1927 2616 5.335113 CGAAGTGAAAAATGGCAAGAGATCA 60.335 40.000 0.00 0.00 0.00 2.92
1928 2617 5.382618 AGTGAAAAATGGCAAGAGATCAC 57.617 39.130 12.81 12.81 36.95 3.06
1929 2618 4.828939 AGTGAAAAATGGCAAGAGATCACA 59.171 37.500 19.06 1.47 38.64 3.58
1930 2619 5.302568 AGTGAAAAATGGCAAGAGATCACAA 59.697 36.000 19.06 0.00 38.64 3.33
1931 2620 5.632347 GTGAAAAATGGCAAGAGATCACAAG 59.368 40.000 14.72 0.00 36.75 3.16
1932 2621 3.863142 AAATGGCAAGAGATCACAAGC 57.137 42.857 0.00 0.00 0.00 4.01
1933 2622 2.803030 ATGGCAAGAGATCACAAGCT 57.197 45.000 0.00 0.00 0.00 3.74
1934 2623 1.817357 TGGCAAGAGATCACAAGCTG 58.183 50.000 0.00 0.00 0.00 4.24
1935 2624 0.450983 GGCAAGAGATCACAAGCTGC 59.549 55.000 0.00 0.00 0.00 5.25
1936 2625 1.162698 GCAAGAGATCACAAGCTGCA 58.837 50.000 1.02 0.00 0.00 4.41
1937 2626 1.130749 GCAAGAGATCACAAGCTGCAG 59.869 52.381 10.11 10.11 0.00 4.41
1938 2627 2.424557 CAAGAGATCACAAGCTGCAGT 58.575 47.619 16.64 0.00 0.00 4.40
1939 2628 2.812591 CAAGAGATCACAAGCTGCAGTT 59.187 45.455 16.64 6.37 0.00 3.16
1940 2629 3.137446 AGAGATCACAAGCTGCAGTTT 57.863 42.857 16.64 13.48 0.00 2.66
1941 2630 2.812591 AGAGATCACAAGCTGCAGTTTG 59.187 45.455 33.56 33.56 41.21 2.93
1942 2631 1.268899 AGATCACAAGCTGCAGTTTGC 59.731 47.619 34.66 21.95 45.29 3.68
1955 2644 2.229792 CAGTTTGCCTTTAGAGTGCCA 58.770 47.619 0.00 0.00 0.00 4.92
1972 2661 2.294233 TGCCAGTTTGTTCTCTTGCATC 59.706 45.455 0.00 0.00 29.61 3.91
1976 2665 3.567164 CAGTTTGTTCTCTTGCATCCTGT 59.433 43.478 0.00 0.00 0.00 4.00
1986 2675 4.005650 TCTTGCATCCTGTGAACAGAATC 58.994 43.478 12.05 0.00 46.59 2.52
1987 2676 2.715046 TGCATCCTGTGAACAGAATCC 58.285 47.619 12.05 0.00 46.59 3.01
1988 2677 2.306805 TGCATCCTGTGAACAGAATCCT 59.693 45.455 12.05 0.00 46.59 3.24
1999 2689 5.178996 GTGAACAGAATCCTGCTAGCATATG 59.821 44.000 19.72 13.29 44.16 1.78
2000 2690 5.070847 TGAACAGAATCCTGCTAGCATATGA 59.929 40.000 19.72 15.32 44.16 2.15
2013 2703 4.959596 AGCATATGAAAGCAGTTGTCTG 57.040 40.909 6.97 0.00 43.87 3.51
2023 2713 3.825328 AGCAGTTGTCTGTCCATCTTTT 58.175 40.909 0.00 0.00 43.05 2.27
2025 2715 3.364366 GCAGTTGTCTGTCCATCTTTTCG 60.364 47.826 0.00 0.00 43.05 3.46
2027 2717 2.808543 GTTGTCTGTCCATCTTTTCGCT 59.191 45.455 0.00 0.00 0.00 4.93
2042 2732 3.314541 TTCGCTAACTGAGGTCCTTTC 57.685 47.619 0.00 0.00 0.00 2.62
2061 2751 6.044754 TCCTTTCCATGAATATGATAGCAGGT 59.955 38.462 0.00 0.00 36.36 4.00
2067 2757 6.095021 CCATGAATATGATAGCAGGTCCATTG 59.905 42.308 0.00 0.00 36.36 2.82
2073 2763 3.202818 TGATAGCAGGTCCATTGTCCATT 59.797 43.478 0.00 0.00 0.00 3.16
2077 2768 2.360165 GCAGGTCCATTGTCCATTGATC 59.640 50.000 0.00 0.00 0.00 2.92
2096 2787 5.724328 TGATCCATTATGCCTAACGATCTC 58.276 41.667 15.54 1.32 32.33 2.75
2099 2790 5.541845 TCCATTATGCCTAACGATCTCTTG 58.458 41.667 0.00 0.00 0.00 3.02
2103 2794 3.247006 TGCCTAACGATCTCTTGGAAC 57.753 47.619 0.00 0.00 0.00 3.62
2121 2812 8.762645 TCTTGGAACTTATCTGATTATCACACT 58.237 33.333 0.00 0.00 0.00 3.55
2142 2833 2.191400 CAGGTGGGGATCTTCTCTTGA 58.809 52.381 0.00 0.00 0.00 3.02
2150 2841 7.127032 GGTGGGGATCTTCTCTTGATATGATAT 59.873 40.741 0.00 0.00 0.00 1.63
2161 2852 9.679661 TCTCTTGATATGATATACTCAGGAGTC 57.320 37.037 5.00 0.00 40.64 3.36
2175 2866 5.047660 ACTCAGGAGTCAATGACTAGAACAC 60.048 44.000 16.71 2.41 43.53 3.32
2195 2886 6.894339 ACACGTAAAATTGAATCCTTTCCT 57.106 33.333 0.00 0.00 0.00 3.36
2222 2913 3.756082 ATTAGCCCCCAGAAACAATCA 57.244 42.857 0.00 0.00 0.00 2.57
2224 2915 0.040204 AGCCCCCAGAAACAATCAGG 59.960 55.000 0.00 0.00 34.56 3.86
2283 2974 2.939103 GCTAATCACCACCATCACTGTC 59.061 50.000 0.00 0.00 0.00 3.51
2298 2989 6.393171 CATCACTGTCTGTCATCTTTCTGTA 58.607 40.000 0.00 0.00 0.00 2.74
2309 3000 7.397221 TGTCATCTTTCTGTAGGATGTTTGAT 58.603 34.615 6.35 0.00 38.28 2.57
2352 3043 5.291971 GGCTTAATTTGCATTATGACTGGG 58.708 41.667 0.00 0.00 29.10 4.45
2363 3054 5.067674 GCATTATGACTGGGAATAGTGCAAA 59.932 40.000 0.00 0.00 40.07 3.68
2364 3055 6.239120 GCATTATGACTGGGAATAGTGCAAAT 60.239 38.462 0.00 0.00 40.07 2.32
2365 3056 6.698008 TTATGACTGGGAATAGTGCAAATG 57.302 37.500 0.00 0.00 0.00 2.32
2366 3057 4.032960 TGACTGGGAATAGTGCAAATGT 57.967 40.909 0.00 0.00 0.00 2.71
2367 3058 3.758023 TGACTGGGAATAGTGCAAATGTG 59.242 43.478 0.00 0.00 0.00 3.21
2425 3116 7.225145 CCTTGCTTGATTTTGATTTTGACTTCA 59.775 33.333 0.00 0.00 0.00 3.02
2429 3120 9.940166 GCTTGATTTTGATTTTGACTTCAAATT 57.060 25.926 5.26 2.41 44.30 1.82
2461 3152 6.379703 TCTGGATTGGTTCTTTTGAAAACTCA 59.620 34.615 0.00 0.00 40.53 3.41
2471 3162 9.750125 GTTCTTTTGAAAACTCACTCCATAATT 57.250 29.630 0.00 0.00 40.53 1.40
2477 3168 5.779806 AAACTCACTCCATAATTCGAACG 57.220 39.130 0.00 0.00 0.00 3.95
2731 3422 1.063469 CCGTGGTATTGCCGACAATTC 59.937 52.381 1.22 0.00 44.21 2.17
2734 3425 3.807622 CGTGGTATTGCCGACAATTCTAT 59.192 43.478 1.22 0.00 44.21 1.98
2871 3564 6.889301 AAAATCCACATGTATAGGCATGAG 57.111 37.500 12.27 5.04 46.65 2.90
2968 3768 9.689976 TTTGTTGATCACACCATATTTTTAGTG 57.310 29.630 0.00 0.00 33.98 2.74
2969 3769 8.628630 TGTTGATCACACCATATTTTTAGTGA 57.371 30.769 0.00 0.00 39.90 3.41
3063 3863 7.829211 ACTAAACAGCACATGGTATTATGAAGT 59.171 33.333 0.00 0.00 0.00 3.01
3065 3865 6.683974 ACAGCACATGGTATTATGAAGTTC 57.316 37.500 0.00 0.00 0.00 3.01
3067 3867 6.317140 ACAGCACATGGTATTATGAAGTTCTG 59.683 38.462 4.17 0.00 0.00 3.02
3068 3868 5.297776 AGCACATGGTATTATGAAGTTCTGC 59.702 40.000 4.17 1.11 0.00 4.26
3069 3869 5.066375 GCACATGGTATTATGAAGTTCTGCA 59.934 40.000 4.17 0.00 0.00 4.41
3070 3870 6.489675 CACATGGTATTATGAAGTTCTGCAC 58.510 40.000 4.17 0.00 0.00 4.57
3071 3871 6.093909 CACATGGTATTATGAAGTTCTGCACA 59.906 38.462 4.17 0.00 0.00 4.57
3072 3872 6.658816 ACATGGTATTATGAAGTTCTGCACAA 59.341 34.615 4.17 0.00 0.00 3.33
3073 3873 7.176515 ACATGGTATTATGAAGTTCTGCACAAA 59.823 33.333 4.17 0.00 0.00 2.83
3074 3874 7.701539 TGGTATTATGAAGTTCTGCACAAAT 57.298 32.000 4.17 0.00 0.00 2.32
3075 3875 8.800370 TGGTATTATGAAGTTCTGCACAAATA 57.200 30.769 4.17 0.00 0.00 1.40
3076 3876 9.237187 TGGTATTATGAAGTTCTGCACAAATAA 57.763 29.630 4.17 0.00 0.00 1.40
3176 3976 7.201207 GCGTGTTCGGAATTTGAAAAGTATAAC 60.201 37.037 0.00 0.00 37.56 1.89
3280 4129 0.447801 GCATGACAAATCGAACGCCT 59.552 50.000 0.00 0.00 0.00 5.52
3302 4151 6.201517 CCTAAGATGGCAAATTATGTTGTCG 58.798 40.000 0.00 0.00 35.83 4.35
3303 4152 4.032703 AGATGGCAAATTATGTTGTCGC 57.967 40.909 0.00 0.00 35.83 5.19
3314 4163 2.032634 GTTGTCGCGAGGATGGCAA 61.033 57.895 10.24 6.22 41.24 4.52
3426 4275 5.229887 CGACAACATAATTTGCCATGCTTAC 59.770 40.000 0.00 0.00 0.00 2.34
3463 4312 5.760253 AGATTTGTAGCATTCCCGACTATTG 59.240 40.000 0.00 0.00 0.00 1.90
3498 4347 7.790782 AGGAGAGAGAGAATAATGAATACCC 57.209 40.000 0.00 0.00 0.00 3.69
3521 4371 7.936301 ACCCACAAAAGCATATGTTACAAAATT 59.064 29.630 4.29 0.00 0.00 1.82
3561 4411 8.848830 AGTTAAGGGGGTTTAATGGACTTATAA 58.151 33.333 0.00 0.00 0.00 0.98
3568 4418 8.002459 GGGGTTTAATGGACTTATAATCCTTCA 58.998 37.037 12.36 0.00 37.13 3.02
3613 4463 9.555727 AGTAATGATGTTGTAAGTACAAAGTGT 57.444 29.630 5.49 0.00 46.54 3.55
3635 4485 8.225416 AGTGTATTAGGTATCTATCTGGTCACA 58.775 37.037 0.00 0.00 0.00 3.58
3896 4747 1.353804 GCTTTTGTTGCGTCCACGA 59.646 52.632 2.58 0.00 43.02 4.35
3928 4779 7.230309 TGTGTATTCATTTTGACATCCAGTTCA 59.770 33.333 0.00 0.00 0.00 3.18
3982 4840 3.012518 GCATGTACTCCTGAAAGCATGT 58.987 45.455 0.00 0.00 36.88 3.21
3983 4841 3.441572 GCATGTACTCCTGAAAGCATGTT 59.558 43.478 0.00 0.00 36.88 2.71
3988 4846 2.158475 ACTCCTGAAAGCATGTTTGGGA 60.158 45.455 0.00 3.99 0.00 4.37
4012 4870 2.930019 TGGGACTGGCTGGGAGTG 60.930 66.667 0.00 0.00 0.00 3.51
4038 4896 0.329261 CCTCCTTGGGATGTTGCTGA 59.671 55.000 0.00 0.00 0.00 4.26
4064 4931 2.092753 TGCAGGAGTCAAGGAATGGATC 60.093 50.000 0.00 0.00 0.00 3.36
4325 5192 1.226974 CCGAGCCGTGTATGAGTGG 60.227 63.158 0.00 0.00 0.00 4.00
4352 5219 4.142049 CCAGTGATGAAGTAGAAGAGGGAC 60.142 50.000 0.00 0.00 0.00 4.46
4354 5221 3.444388 GTGATGAAGTAGAAGAGGGACGT 59.556 47.826 0.00 0.00 0.00 4.34
4355 5222 4.082136 GTGATGAAGTAGAAGAGGGACGTT 60.082 45.833 0.00 0.00 0.00 3.99
4356 5223 3.936372 TGAAGTAGAAGAGGGACGTTG 57.064 47.619 0.00 0.00 0.00 4.10
4357 5224 3.493334 TGAAGTAGAAGAGGGACGTTGA 58.507 45.455 0.00 0.00 0.00 3.18
4358 5225 3.893200 TGAAGTAGAAGAGGGACGTTGAA 59.107 43.478 0.00 0.00 0.00 2.69
4360 5227 4.950205 AGTAGAAGAGGGACGTTGAAAA 57.050 40.909 0.00 0.00 0.00 2.29
4361 5228 5.485209 AGTAGAAGAGGGACGTTGAAAAT 57.515 39.130 0.00 0.00 0.00 1.82
4362 5229 5.238583 AGTAGAAGAGGGACGTTGAAAATG 58.761 41.667 0.00 0.00 39.23 2.32
4363 5230 4.351874 AGAAGAGGGACGTTGAAAATGA 57.648 40.909 0.00 0.00 36.03 2.57
4364 5231 4.319177 AGAAGAGGGACGTTGAAAATGAG 58.681 43.478 0.00 0.00 36.03 2.90
4365 5232 2.427506 AGAGGGACGTTGAAAATGAGC 58.572 47.619 0.00 0.00 36.03 4.26
4366 5233 2.151202 GAGGGACGTTGAAAATGAGCA 58.849 47.619 0.00 0.00 36.03 4.26
4367 5234 1.880027 AGGGACGTTGAAAATGAGCAC 59.120 47.619 0.00 0.00 36.03 4.40
4369 5236 2.350772 GGGACGTTGAAAATGAGCACTG 60.351 50.000 0.00 0.00 36.03 3.66
4370 5237 2.548057 GGACGTTGAAAATGAGCACTGA 59.452 45.455 0.00 0.00 36.03 3.41
4371 5238 3.189287 GGACGTTGAAAATGAGCACTGAT 59.811 43.478 0.00 0.00 36.03 2.90
4372 5239 4.151258 ACGTTGAAAATGAGCACTGATG 57.849 40.909 0.00 0.00 36.03 3.07
4373 5240 3.814842 ACGTTGAAAATGAGCACTGATGA 59.185 39.130 0.00 0.00 36.03 2.92
4374 5241 4.456911 ACGTTGAAAATGAGCACTGATGAT 59.543 37.500 0.00 0.00 36.03 2.45
4375 5242 5.026462 CGTTGAAAATGAGCACTGATGATC 58.974 41.667 0.00 0.00 41.86 2.92
4376 5243 5.163784 CGTTGAAAATGAGCACTGATGATCT 60.164 40.000 0.00 0.00 42.02 2.75
4377 5244 6.036408 CGTTGAAAATGAGCACTGATGATCTA 59.964 38.462 0.00 0.00 42.02 1.98
4378 5245 7.254692 CGTTGAAAATGAGCACTGATGATCTAT 60.255 37.037 0.00 0.00 42.02 1.98
4379 5246 8.404000 GTTGAAAATGAGCACTGATGATCTATT 58.596 33.333 0.00 0.00 42.02 1.73
4380 5247 9.617523 TTGAAAATGAGCACTGATGATCTATTA 57.382 29.630 0.00 0.00 42.02 0.98
4381 5248 9.049523 TGAAAATGAGCACTGATGATCTATTAC 57.950 33.333 0.00 0.00 42.02 1.89
4382 5249 9.270640 GAAAATGAGCACTGATGATCTATTACT 57.729 33.333 0.00 0.00 42.02 2.24
4384 5251 9.926158 AAATGAGCACTGATGATCTATTACTAG 57.074 33.333 0.00 0.00 42.02 2.57
4385 5252 6.918626 TGAGCACTGATGATCTATTACTAGC 58.081 40.000 0.00 0.00 42.02 3.42
4386 5253 5.948588 AGCACTGATGATCTATTACTAGCG 58.051 41.667 0.00 0.00 0.00 4.26
4387 5254 5.098893 GCACTGATGATCTATTACTAGCGG 58.901 45.833 0.00 0.00 0.00 5.52
4425 5359 2.716424 AGAGGGGGTTGAAGATGAACAA 59.284 45.455 0.00 0.00 0.00 2.83
4442 5376 3.187478 ACAATGCACGATCTGTTTTCG 57.813 42.857 0.00 0.00 42.20 3.46
4443 5377 2.805671 ACAATGCACGATCTGTTTTCGA 59.194 40.909 0.00 0.00 39.81 3.71
4444 5378 3.155998 CAATGCACGATCTGTTTTCGAC 58.844 45.455 0.00 0.00 39.81 4.20
4445 5379 2.148916 TGCACGATCTGTTTTCGACT 57.851 45.000 0.00 0.00 39.81 4.18
4446 5380 2.479837 TGCACGATCTGTTTTCGACTT 58.520 42.857 0.00 0.00 39.81 3.01
4447 5381 2.869801 TGCACGATCTGTTTTCGACTTT 59.130 40.909 0.00 0.00 39.81 2.66
4448 5382 3.311322 TGCACGATCTGTTTTCGACTTTT 59.689 39.130 0.00 0.00 39.81 2.27
4449 5383 3.900703 GCACGATCTGTTTTCGACTTTTC 59.099 43.478 0.00 0.00 39.81 2.29
4458 5392 5.326292 TGTTTTCGACTTTTCGGACTTTTC 58.674 37.500 0.00 0.00 45.90 2.29
4481 5415 4.558697 CGGCCATACGATGAAGATCTAACA 60.559 45.833 2.24 0.00 35.47 2.41
4494 5428 7.326454 TGAAGATCTAACAGTCCTGATTGAAG 58.674 38.462 0.00 0.00 0.00 3.02
4545 5506 4.288626 GGTGCTCCCATTTATATACTCCCA 59.711 45.833 0.00 0.00 0.00 4.37
4549 5510 5.888161 GCTCCCATTTATATACTCCCATTGG 59.112 44.000 0.00 0.00 0.00 3.16
4565 5526 3.761752 CCATTGGTTCGGAAATAACTGGT 59.238 43.478 0.00 0.00 0.00 4.00
4646 5712 3.173953 AGCTTGGGAAATGATTGGTCA 57.826 42.857 0.00 0.00 39.04 4.02
4661 5728 9.533253 AATGATTGGTCAGTTCTGTTTTAAAAG 57.467 29.630 0.00 0.00 37.87 2.27
4663 5730 5.845391 TGGTCAGTTCTGTTTTAAAAGGG 57.155 39.130 0.00 0.00 0.00 3.95
4672 5739 6.509523 TCTGTTTTAAAAGGGAGAAGAGGA 57.490 37.500 0.00 0.00 0.00 3.71
4674 5741 6.008696 TGTTTTAAAAGGGAGAAGAGGACA 57.991 37.500 0.00 0.00 0.00 4.02
4720 5787 6.978080 GGAAGCAAAGAAAGTGAAAACACATA 59.022 34.615 0.00 0.00 0.00 2.29
4789 5856 5.536161 ACAAAAATTACATGACTGTGCTCCT 59.464 36.000 0.00 0.00 36.79 3.69
4852 5919 3.381272 CCGTCATAAAGGCCATGTCAAAT 59.619 43.478 5.01 0.00 0.00 2.32
4896 5973 6.493458 GCCCAATATAAAGAAGAAGCCCAATA 59.507 38.462 0.00 0.00 0.00 1.90
4911 5988 0.955178 CAATACAACAACCCACCGCA 59.045 50.000 0.00 0.00 0.00 5.69
4948 6026 1.864435 GCGCTACCGAAATCGTCATCT 60.864 52.381 0.00 0.00 37.74 2.90
5099 6178 3.068691 CCTCCTTCCTCGCCGTGA 61.069 66.667 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
422 573 1.358759 CAACCCAAGACAACACGCC 59.641 57.895 0.00 0.00 0.00 5.68
766 1366 8.026026 TGCACATACGATCACAAAATACATTTT 58.974 29.630 0.00 0.00 40.37 1.82
782 1382 1.226295 CTCGAGCGTGCACATACGA 60.226 57.895 18.64 20.33 46.46 3.43
841 1441 8.745590 ACTTTTACTCAATGTTTAGTTTGGTGT 58.254 29.630 0.00 0.00 0.00 4.16
861 1461 6.288941 TCACCGGTCATCATAGAACTTTTA 57.711 37.500 2.59 0.00 0.00 1.52
862 1462 5.160607 TCACCGGTCATCATAGAACTTTT 57.839 39.130 2.59 0.00 0.00 2.27
863 1463 4.819105 TCACCGGTCATCATAGAACTTT 57.181 40.909 2.59 0.00 0.00 2.66
876 1476 4.100498 TGAAAGGAGGTAATATCACCGGTC 59.900 45.833 2.59 0.00 43.84 4.79
952 1552 3.556423 CCTCGGTACTTTAACTGGTGCTT 60.556 47.826 0.00 0.00 0.00 3.91
1079 1682 0.802494 GAATTCTTGCTTTCGCCCGA 59.198 50.000 0.00 0.00 34.43 5.14
1080 1683 0.179163 GGAATTCTTGCTTTCGCCCG 60.179 55.000 5.23 0.00 34.43 6.13
1083 1686 1.791914 GCGAGGAATTCTTGCTTTCGC 60.792 52.381 5.23 12.22 46.85 4.70
1134 1737 1.302832 AGAAAGGGCCGCACAGAAG 60.303 57.895 0.00 0.00 0.00 2.85
1193 1796 2.035783 GCCACCCACCTTCTTCCC 59.964 66.667 0.00 0.00 0.00 3.97
1459 2071 1.378119 CTCCATGGCAGCAAGAGCA 60.378 57.895 6.96 0.00 45.49 4.26
1473 2085 1.131303 ACATGACCCCCGAAACTCCA 61.131 55.000 0.00 0.00 0.00 3.86
1475 2087 3.802675 GCTATACATGACCCCCGAAACTC 60.803 52.174 0.00 0.00 0.00 3.01
1507 2126 0.111001 CCACGCAACGACCGTAAAAG 60.111 55.000 0.00 0.00 37.12 2.27
1517 2141 4.354212 CACGAGCACCACGCAACG 62.354 66.667 0.00 0.00 46.13 4.10
1544 2168 0.815095 TTATCTGCCGCTGACGAAGA 59.185 50.000 1.57 0.00 43.93 2.87
1548 2172 1.290203 ACAATTATCTGCCGCTGACG 58.710 50.000 1.57 0.00 39.67 4.35
1549 2173 3.871594 AGTAACAATTATCTGCCGCTGAC 59.128 43.478 1.57 0.00 0.00 3.51
1552 2176 3.206150 CCAGTAACAATTATCTGCCGCT 58.794 45.455 0.00 0.00 0.00 5.52
1564 2188 2.949177 ATCAGGCACACCAGTAACAA 57.051 45.000 0.00 0.00 39.06 2.83
1569 2193 2.664402 AGAAAATCAGGCACACCAGT 57.336 45.000 0.00 0.00 39.06 4.00
1570 2194 3.152341 AGAAGAAAATCAGGCACACCAG 58.848 45.455 0.00 0.00 39.06 4.00
1585 2209 4.887748 ACGCATCAAGAGAAGAAGAAGAA 58.112 39.130 0.00 0.00 0.00 2.52
1586 2210 4.527509 ACGCATCAAGAGAAGAAGAAGA 57.472 40.909 0.00 0.00 0.00 2.87
1587 2211 4.564769 GGTACGCATCAAGAGAAGAAGAAG 59.435 45.833 0.00 0.00 0.00 2.85
1590 2214 4.116747 AGGTACGCATCAAGAGAAGAAG 57.883 45.455 0.00 0.00 0.00 2.85
1601 2225 0.814010 AATCGGCCAAGGTACGCATC 60.814 55.000 2.24 0.00 0.00 3.91
1602 2226 1.095228 CAATCGGCCAAGGTACGCAT 61.095 55.000 2.24 0.00 0.00 4.73
1603 2227 1.743623 CAATCGGCCAAGGTACGCA 60.744 57.895 2.24 0.00 0.00 5.24
1604 2228 1.448893 TCAATCGGCCAAGGTACGC 60.449 57.895 2.24 0.00 0.00 4.42
1605 2229 0.390603 TGTCAATCGGCCAAGGTACG 60.391 55.000 2.24 0.03 0.00 3.67
1606 2230 1.084289 GTGTCAATCGGCCAAGGTAC 58.916 55.000 2.24 0.00 0.00 3.34
1607 2231 0.687920 TGTGTCAATCGGCCAAGGTA 59.312 50.000 2.24 0.00 0.00 3.08
1608 2232 0.038166 ATGTGTCAATCGGCCAAGGT 59.962 50.000 2.24 0.00 0.00 3.50
1609 2233 0.452987 CATGTGTCAATCGGCCAAGG 59.547 55.000 2.24 0.00 0.00 3.61
1610 2234 1.131126 GTCATGTGTCAATCGGCCAAG 59.869 52.381 2.24 0.00 0.00 3.61
1611 2235 1.164411 GTCATGTGTCAATCGGCCAA 58.836 50.000 2.24 0.00 0.00 4.52
1612 2236 0.324614 AGTCATGTGTCAATCGGCCA 59.675 50.000 2.24 0.00 0.00 5.36
1613 2237 0.729116 CAGTCATGTGTCAATCGGCC 59.271 55.000 0.00 0.00 0.00 6.13
1614 2238 0.097674 GCAGTCATGTGTCAATCGGC 59.902 55.000 0.00 0.00 0.00 5.54
1615 2239 1.395954 CAGCAGTCATGTGTCAATCGG 59.604 52.381 0.00 0.00 0.00 4.18
1616 2240 2.071540 ACAGCAGTCATGTGTCAATCG 58.928 47.619 0.00 0.00 0.00 3.34
1617 2241 2.417933 GGACAGCAGTCATGTGTCAATC 59.582 50.000 11.67 0.00 46.80 2.67
1618 2242 2.430465 GGACAGCAGTCATGTGTCAAT 58.570 47.619 11.67 0.00 46.80 2.57
1619 2243 1.543208 GGGACAGCAGTCATGTGTCAA 60.543 52.381 11.67 0.00 46.80 3.18
1620 2244 0.035317 GGGACAGCAGTCATGTGTCA 59.965 55.000 11.67 0.00 46.80 3.58
1621 2245 0.674895 GGGGACAGCAGTCATGTGTC 60.675 60.000 11.67 5.12 46.80 3.67
1622 2246 1.130054 AGGGGACAGCAGTCATGTGT 61.130 55.000 11.67 0.00 46.80 3.72
1623 2247 0.392193 GAGGGGACAGCAGTCATGTG 60.392 60.000 11.67 0.00 46.80 3.21
1624 2248 0.837691 TGAGGGGACAGCAGTCATGT 60.838 55.000 11.67 0.00 46.80 3.21
1625 2249 0.325933 TTGAGGGGACAGCAGTCATG 59.674 55.000 11.67 0.00 46.80 3.07
1626 2250 1.067295 TTTGAGGGGACAGCAGTCAT 58.933 50.000 11.67 0.00 46.80 3.06
1627 2251 0.843309 TTTTGAGGGGACAGCAGTCA 59.157 50.000 11.67 0.00 46.80 3.41
1628 2252 1.981256 TTTTTGAGGGGACAGCAGTC 58.019 50.000 0.00 0.00 44.21 3.51
1644 2268 7.254932 GCAGTCATGTGTTACTCTTCTCTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
1645 2269 6.203723 GCAGTCATGTGTTACTCTTCTCTTTT 59.796 38.462 0.00 0.00 0.00 2.27
1646 2270 5.698545 GCAGTCATGTGTTACTCTTCTCTTT 59.301 40.000 0.00 0.00 0.00 2.52
1647 2271 5.011533 AGCAGTCATGTGTTACTCTTCTCTT 59.988 40.000 0.00 0.00 0.00 2.85
1648 2272 4.526262 AGCAGTCATGTGTTACTCTTCTCT 59.474 41.667 0.00 0.00 0.00 3.10
1649 2273 4.624882 CAGCAGTCATGTGTTACTCTTCTC 59.375 45.833 0.00 0.00 0.00 2.87
1650 2274 4.564041 CAGCAGTCATGTGTTACTCTTCT 58.436 43.478 0.00 0.00 0.00 2.85
1651 2275 3.124297 GCAGCAGTCATGTGTTACTCTTC 59.876 47.826 0.00 0.00 0.00 2.87
1652 2276 3.070018 GCAGCAGTCATGTGTTACTCTT 58.930 45.455 0.00 0.00 0.00 2.85
1653 2277 2.037641 TGCAGCAGTCATGTGTTACTCT 59.962 45.455 0.00 0.00 0.00 3.24
1680 2304 5.116180 TCTAAAGGCAATATTCACTGTCCG 58.884 41.667 0.00 0.00 0.00 4.79
1681 2305 7.391148 TTTCTAAAGGCAATATTCACTGTCC 57.609 36.000 0.00 0.00 0.00 4.02
1682 2306 7.755373 GGTTTTCTAAAGGCAATATTCACTGTC 59.245 37.037 0.00 0.00 0.00 3.51
1683 2307 7.451566 AGGTTTTCTAAAGGCAATATTCACTGT 59.548 33.333 0.00 0.00 0.00 3.55
1685 2309 7.890655 AGAGGTTTTCTAAAGGCAATATTCACT 59.109 33.333 0.00 0.00 33.23 3.41
1686 2310 8.056407 AGAGGTTTTCTAAAGGCAATATTCAC 57.944 34.615 0.00 0.00 33.23 3.18
1688 2312 8.184848 GTGAGAGGTTTTCTAAAGGCAATATTC 58.815 37.037 0.00 0.00 35.87 1.75
1689 2313 7.148239 CGTGAGAGGTTTTCTAAAGGCAATATT 60.148 37.037 0.00 0.00 35.87 1.28
1690 2314 6.316390 CGTGAGAGGTTTTCTAAAGGCAATAT 59.684 38.462 0.00 0.00 35.87 1.28
1691 2315 5.642063 CGTGAGAGGTTTTCTAAAGGCAATA 59.358 40.000 0.00 0.00 35.87 1.90
1692 2316 4.455877 CGTGAGAGGTTTTCTAAAGGCAAT 59.544 41.667 0.00 0.00 35.87 3.56
1693 2317 3.813166 CGTGAGAGGTTTTCTAAAGGCAA 59.187 43.478 0.00 0.00 35.87 4.52
1694 2318 3.399330 CGTGAGAGGTTTTCTAAAGGCA 58.601 45.455 0.00 0.00 35.87 4.75
1697 2321 2.742589 GCCCGTGAGAGGTTTTCTAAAG 59.257 50.000 0.00 0.00 35.87 1.85
1699 2323 1.695242 TGCCCGTGAGAGGTTTTCTAA 59.305 47.619 0.00 0.00 35.87 2.10
1700 2324 1.275291 CTGCCCGTGAGAGGTTTTCTA 59.725 52.381 0.00 0.00 35.87 2.10
1702 2326 0.250338 ACTGCCCGTGAGAGGTTTTC 60.250 55.000 0.00 0.00 0.00 2.29
1704 2328 1.071471 CACTGCCCGTGAGAGGTTT 59.929 57.895 0.00 0.00 46.81 3.27
1706 2330 0.614979 ATACACTGCCCGTGAGAGGT 60.615 55.000 9.87 0.00 46.81 3.85
1708 2332 0.807667 GCATACACTGCCCGTGAGAG 60.808 60.000 9.87 1.26 46.81 3.20
1710 2334 3.799753 GCATACACTGCCCGTGAG 58.200 61.111 9.87 1.85 46.81 3.51
1718 2342 7.280876 AGGTTTTCTACATGTATGCATACACTG 59.719 37.037 35.53 31.32 45.11 3.66
1719 2343 7.338710 AGGTTTTCTACATGTATGCATACACT 58.661 34.615 35.53 26.07 45.11 3.55
1732 2401 2.027469 GTCCGTGGGAGGTTTTCTACAT 60.027 50.000 0.00 0.00 29.39 2.29
1734 2403 1.345415 TGTCCGTGGGAGGTTTTCTAC 59.655 52.381 0.00 0.00 29.39 2.59
1767 2436 1.597742 TTCTGCCACAAGAGTGCTTC 58.402 50.000 0.00 0.00 44.53 3.86
1770 2439 1.597742 TCTTTCTGCCACAAGAGTGC 58.402 50.000 0.00 0.00 44.53 4.40
1771 2440 3.209410 AGTTCTTTCTGCCACAAGAGTG 58.791 45.455 0.00 0.00 45.47 3.51
1772 2441 3.471680 GAGTTCTTTCTGCCACAAGAGT 58.528 45.455 0.00 0.00 30.68 3.24
1773 2442 2.810852 GGAGTTCTTTCTGCCACAAGAG 59.189 50.000 0.00 0.00 30.68 2.85
1774 2443 2.439507 AGGAGTTCTTTCTGCCACAAGA 59.560 45.455 0.00 0.00 0.00 3.02
1775 2444 2.856222 AGGAGTTCTTTCTGCCACAAG 58.144 47.619 0.00 0.00 0.00 3.16
1789 2478 9.710900 CCAAAAATAAATGCTCTTTTAGGAGTT 57.289 29.630 0.00 0.00 37.59 3.01
1790 2479 7.819415 GCCAAAAATAAATGCTCTTTTAGGAGT 59.181 33.333 0.00 0.00 35.89 3.85
1791 2480 7.818930 TGCCAAAAATAAATGCTCTTTTAGGAG 59.181 33.333 0.00 0.00 36.50 3.69
1792 2481 7.675062 TGCCAAAAATAAATGCTCTTTTAGGA 58.325 30.769 0.00 0.00 0.00 2.94
1793 2482 7.903995 TGCCAAAAATAAATGCTCTTTTAGG 57.096 32.000 0.00 0.00 0.00 2.69
1794 2483 8.772705 TGTTGCCAAAAATAAATGCTCTTTTAG 58.227 29.630 0.00 0.00 0.00 1.85
1795 2484 8.668510 TGTTGCCAAAAATAAATGCTCTTTTA 57.331 26.923 0.00 0.00 0.00 1.52
1796 2485 7.565323 TGTTGCCAAAAATAAATGCTCTTTT 57.435 28.000 0.00 0.00 0.00 2.27
1797 2486 7.565323 TTGTTGCCAAAAATAAATGCTCTTT 57.435 28.000 0.00 0.00 0.00 2.52
1802 2491 5.106752 ACGGATTGTTGCCAAAAATAAATGC 60.107 36.000 0.00 0.00 33.44 3.56
1808 2497 4.446371 TCAAACGGATTGTTGCCAAAAAT 58.554 34.783 0.00 0.00 40.84 1.82
1818 2507 5.009631 TCTGATCCAAATCAAACGGATTGT 58.990 37.500 0.00 0.00 45.46 2.71
1823 2512 7.312154 TGTAATTTCTGATCCAAATCAAACGG 58.688 34.615 0.00 0.00 41.33 4.44
1824 2513 8.741101 TTGTAATTTCTGATCCAAATCAAACG 57.259 30.769 0.00 0.00 41.33 3.60
1829 2518 9.912634 TTCAACTTGTAATTTCTGATCCAAATC 57.087 29.630 0.00 0.00 0.00 2.17
1835 2524 9.565213 CCTTCATTCAACTTGTAATTTCTGATC 57.435 33.333 0.00 0.00 0.00 2.92
1844 2533 6.378564 TGTTTGTCCCTTCATTCAACTTGTAA 59.621 34.615 0.00 0.00 0.00 2.41
1845 2534 5.888724 TGTTTGTCCCTTCATTCAACTTGTA 59.111 36.000 0.00 0.00 0.00 2.41
1873 2562 7.455008 TCATAGAAAGTTTAGGAAGACAGAGGT 59.545 37.037 0.00 0.00 0.00 3.85
1874 2563 7.841956 TCATAGAAAGTTTAGGAAGACAGAGG 58.158 38.462 0.00 0.00 0.00 3.69
1876 2565 9.090103 TCTTCATAGAAAGTTTAGGAAGACAGA 57.910 33.333 10.10 0.00 40.78 3.41
1880 2569 8.118976 TCGTCTTCATAGAAAGTTTAGGAAGA 57.881 34.615 10.10 10.10 42.36 2.87
1881 2570 8.758633 TTCGTCTTCATAGAAAGTTTAGGAAG 57.241 34.615 6.49 6.49 39.20 3.46
1882 2571 8.365647 ACTTCGTCTTCATAGAAAGTTTAGGAA 58.634 33.333 0.00 0.00 30.74 3.36
1886 2575 9.537192 TTTCACTTCGTCTTCATAGAAAGTTTA 57.463 29.630 0.00 0.00 31.94 2.01
1887 2576 8.433421 TTTCACTTCGTCTTCATAGAAAGTTT 57.567 30.769 0.00 0.00 31.94 2.66
1888 2577 8.433421 TTTTCACTTCGTCTTCATAGAAAGTT 57.567 30.769 0.00 0.00 31.94 2.66
1889 2578 8.433421 TTTTTCACTTCGTCTTCATAGAAAGT 57.567 30.769 0.00 0.00 33.67 2.66
1890 2579 9.322776 CATTTTTCACTTCGTCTTCATAGAAAG 57.677 33.333 0.00 0.00 30.65 2.62
1891 2580 8.289618 CCATTTTTCACTTCGTCTTCATAGAAA 58.710 33.333 0.00 0.00 30.65 2.52
1892 2581 7.573096 GCCATTTTTCACTTCGTCTTCATAGAA 60.573 37.037 0.00 0.00 30.65 2.10
1893 2582 6.128282 GCCATTTTTCACTTCGTCTTCATAGA 60.128 38.462 0.00 0.00 0.00 1.98
1899 2588 4.338118 TCTTGCCATTTTTCACTTCGTCTT 59.662 37.500 0.00 0.00 0.00 3.01
1905 2594 5.302568 TGTGATCTCTTGCCATTTTTCACTT 59.697 36.000 0.00 0.00 34.72 3.16
1908 2597 5.775686 CTTGTGATCTCTTGCCATTTTTCA 58.224 37.500 0.00 0.00 0.00 2.69
1912 2601 3.192844 CAGCTTGTGATCTCTTGCCATTT 59.807 43.478 0.00 0.00 0.00 2.32
1913 2602 2.753452 CAGCTTGTGATCTCTTGCCATT 59.247 45.455 0.00 0.00 0.00 3.16
1914 2603 2.366533 CAGCTTGTGATCTCTTGCCAT 58.633 47.619 0.00 0.00 0.00 4.40
1915 2604 1.817357 CAGCTTGTGATCTCTTGCCA 58.183 50.000 0.00 0.00 0.00 4.92
1916 2605 0.450983 GCAGCTTGTGATCTCTTGCC 59.549 55.000 0.00 0.00 0.00 4.52
1918 2607 2.424557 ACTGCAGCTTGTGATCTCTTG 58.575 47.619 15.27 0.00 0.00 3.02
1919 2608 2.855209 ACTGCAGCTTGTGATCTCTT 57.145 45.000 15.27 0.00 0.00 2.85
1920 2609 2.812591 CAAACTGCAGCTTGTGATCTCT 59.187 45.455 19.53 0.00 0.00 3.10
1921 2610 2.667724 GCAAACTGCAGCTTGTGATCTC 60.668 50.000 26.14 8.92 44.26 2.75
1922 2611 1.268899 GCAAACTGCAGCTTGTGATCT 59.731 47.619 26.14 0.00 44.26 2.75
1923 2612 1.694639 GCAAACTGCAGCTTGTGATC 58.305 50.000 26.14 9.87 44.26 2.92
1924 2613 3.879912 GCAAACTGCAGCTTGTGAT 57.120 47.368 26.14 0.00 44.26 3.06
1934 2623 1.068264 GGCACTCTAAAGGCAAACTGC 60.068 52.381 0.00 0.00 44.08 4.40
1935 2624 2.227388 CTGGCACTCTAAAGGCAAACTG 59.773 50.000 0.00 0.00 39.95 3.16
1936 2625 2.158608 ACTGGCACTCTAAAGGCAAACT 60.159 45.455 0.00 0.00 39.95 2.66
1937 2626 2.230660 ACTGGCACTCTAAAGGCAAAC 58.769 47.619 0.00 0.00 39.95 2.93
1938 2627 2.656947 ACTGGCACTCTAAAGGCAAA 57.343 45.000 0.00 0.00 39.95 3.68
1939 2628 2.622942 CAAACTGGCACTCTAAAGGCAA 59.377 45.455 0.00 0.00 39.95 4.52
1940 2629 2.229792 CAAACTGGCACTCTAAAGGCA 58.770 47.619 0.00 0.00 38.67 4.75
1941 2630 2.230660 ACAAACTGGCACTCTAAAGGC 58.769 47.619 0.00 0.00 0.00 4.35
1942 2631 4.137543 AGAACAAACTGGCACTCTAAAGG 58.862 43.478 0.00 0.00 0.00 3.11
1955 2644 3.567164 CACAGGATGCAAGAGAACAAACT 59.433 43.478 0.00 0.00 42.53 2.66
1972 2661 2.486472 AGCAGGATTCTGTTCACAGG 57.514 50.000 2.16 0.00 43.91 4.00
1976 2665 3.920231 ATGCTAGCAGGATTCTGTTCA 57.080 42.857 23.89 0.00 42.78 3.18
1988 2677 4.264253 ACAACTGCTTTCATATGCTAGCA 58.736 39.130 21.85 21.85 41.01 3.49
1999 2689 3.406764 AGATGGACAGACAACTGCTTTC 58.593 45.455 0.00 0.00 46.95 2.62
2000 2690 3.498774 AGATGGACAGACAACTGCTTT 57.501 42.857 0.00 0.00 46.95 3.51
2013 2703 3.619038 CCTCAGTTAGCGAAAAGATGGAC 59.381 47.826 0.00 0.00 0.00 4.02
2023 2713 1.549170 GGAAAGGACCTCAGTTAGCGA 59.451 52.381 0.00 0.00 0.00 4.93
2025 2715 3.055094 TCATGGAAAGGACCTCAGTTAGC 60.055 47.826 0.00 0.00 0.00 3.09
2027 2717 5.779241 ATTCATGGAAAGGACCTCAGTTA 57.221 39.130 0.00 0.00 0.00 2.24
2042 2732 5.169992 TGGACCTGCTATCATATTCATGG 57.830 43.478 0.00 0.00 32.61 3.66
2061 2751 5.244402 GCATAATGGATCAATGGACAATGGA 59.756 40.000 0.00 0.00 0.00 3.41
2067 2757 5.106555 CGTTAGGCATAATGGATCAATGGAC 60.107 44.000 2.35 0.00 0.00 4.02
2073 2763 5.481824 AGAGATCGTTAGGCATAATGGATCA 59.518 40.000 24.39 5.34 36.80 2.92
2077 2768 4.692625 CCAAGAGATCGTTAGGCATAATGG 59.307 45.833 10.24 0.09 0.00 3.16
2096 2787 8.954950 AGTGTGATAATCAGATAAGTTCCAAG 57.045 34.615 0.00 0.00 0.00 3.61
2121 2812 2.191400 CAAGAGAAGATCCCCACCTGA 58.809 52.381 0.00 0.00 0.00 3.86
2142 2833 9.766754 AGTCATTGACTCCTGAGTATATCATAT 57.233 33.333 13.61 0.00 38.71 1.78
2150 2841 6.151312 GTGTTCTAGTCATTGACTCCTGAGTA 59.849 42.308 22.16 6.13 42.40 2.59
2154 2845 4.169508 CGTGTTCTAGTCATTGACTCCTG 58.830 47.826 22.16 13.64 42.40 3.86
2155 2846 3.827302 ACGTGTTCTAGTCATTGACTCCT 59.173 43.478 22.16 2.49 42.40 3.69
2161 2852 9.825972 ATTCAATTTTACGTGTTCTAGTCATTG 57.174 29.630 0.00 0.00 0.00 2.82
2175 2866 7.065803 TCAGCTAGGAAAGGATTCAATTTTACG 59.934 37.037 0.00 0.00 37.29 3.18
2208 2899 2.584835 TGACCTGATTGTTTCTGGGG 57.415 50.000 3.96 0.00 45.36 4.96
2222 2913 1.719063 AAGCACCCACACCATGACCT 61.719 55.000 0.00 0.00 0.00 3.85
2224 2915 2.128771 ATAAGCACCCACACCATGAC 57.871 50.000 0.00 0.00 0.00 3.06
2250 2941 4.574828 GTGGTGATTAGCGTCCATATGTTT 59.425 41.667 1.24 0.00 32.45 2.83
2283 2974 6.875726 TCAAACATCCTACAGAAAGATGACAG 59.124 38.462 6.25 0.00 39.84 3.51
2309 3000 5.332743 AGCCCTGGACAAATCAGAATAAAA 58.667 37.500 0.00 0.00 34.36 1.52
2425 3116 8.655935 AAGAACCAATCCAGATAACAGAATTT 57.344 30.769 0.00 0.00 0.00 1.82
2429 3120 7.230747 TCAAAAGAACCAATCCAGATAACAGA 58.769 34.615 0.00 0.00 0.00 3.41
2430 3121 7.452880 TCAAAAGAACCAATCCAGATAACAG 57.547 36.000 0.00 0.00 0.00 3.16
2431 3122 7.831691 TTCAAAAGAACCAATCCAGATAACA 57.168 32.000 0.00 0.00 0.00 2.41
2432 3123 8.978539 GTTTTCAAAAGAACCAATCCAGATAAC 58.021 33.333 0.00 0.00 0.00 1.89
2461 3152 5.006358 GCATAACACGTTCGAATTATGGAGT 59.994 40.000 21.80 6.13 36.14 3.85
2471 3162 2.252747 CGGTAAGCATAACACGTTCGA 58.747 47.619 0.00 0.00 0.00 3.71
2477 3168 3.805207 AGGATTCCGGTAAGCATAACAC 58.195 45.455 0.00 0.00 0.00 3.32
2731 3422 6.449698 ACACAATGTGAAAGAAAAGGCATAG 58.550 36.000 21.34 0.00 36.96 2.23
2734 3425 4.734398 ACACAATGTGAAAGAAAAGGCA 57.266 36.364 21.34 0.00 36.96 4.75
2840 3533 6.974622 CCTATACATGTGGATTTTTGAAGCAC 59.025 38.462 9.11 0.00 0.00 4.40
2968 3768 8.909671 CAGCACAGAGTTCAAATAAAATTTCTC 58.090 33.333 0.00 0.00 0.00 2.87
2969 3769 8.632679 TCAGCACAGAGTTCAAATAAAATTTCT 58.367 29.630 0.00 0.00 0.00 2.52
2976 3776 3.753272 GGCTCAGCACAGAGTTCAAATAA 59.247 43.478 0.00 0.00 37.94 1.40
2978 3778 2.157738 GGCTCAGCACAGAGTTCAAAT 58.842 47.619 0.00 0.00 37.94 2.32
2981 3781 0.034476 CTGGCTCAGCACAGAGTTCA 59.966 55.000 8.98 0.00 37.94 3.18
3063 3863 6.204688 CAGTACCACTCTTTATTTGTGCAGAA 59.795 38.462 0.00 0.00 0.00 3.02
3065 3865 5.700832 TCAGTACCACTCTTTATTTGTGCAG 59.299 40.000 0.00 0.00 0.00 4.41
3067 3867 6.403636 CCATCAGTACCACTCTTTATTTGTGC 60.404 42.308 0.00 0.00 0.00 4.57
3068 3868 6.655003 ACCATCAGTACCACTCTTTATTTGTG 59.345 38.462 0.00 0.00 0.00 3.33
3069 3869 6.779860 ACCATCAGTACCACTCTTTATTTGT 58.220 36.000 0.00 0.00 0.00 2.83
3070 3870 7.687941 AACCATCAGTACCACTCTTTATTTG 57.312 36.000 0.00 0.00 0.00 2.32
3071 3871 8.706322 AAAACCATCAGTACCACTCTTTATTT 57.294 30.769 0.00 0.00 0.00 1.40
3072 3872 8.706322 AAAAACCATCAGTACCACTCTTTATT 57.294 30.769 0.00 0.00 0.00 1.40
3139 3939 2.854777 TCCGAACACGCAAAAACAAATG 59.145 40.909 0.00 0.00 0.00 2.32
3259 4108 1.663643 GGCGTTCGATTTGTCATGCTA 59.336 47.619 0.00 0.00 0.00 3.49
3280 4129 5.577835 GCGACAACATAATTTGCCATCTTA 58.422 37.500 0.00 0.00 0.00 2.10
3302 4151 1.106285 AAGGAAATTGCCATCCTCGC 58.894 50.000 4.92 0.00 45.33 5.03
3303 4152 4.157656 TGTTAAAGGAAATTGCCATCCTCG 59.842 41.667 4.92 0.00 45.33 4.63
3314 4163 9.271828 GGATTTGTCATGTTTGTTAAAGGAAAT 57.728 29.630 0.00 0.00 0.00 2.17
3463 4312 7.781324 ATTCTCTCTCTCCTTTCCATAGATC 57.219 40.000 0.00 0.00 0.00 2.75
3530 4380 9.693327 AGTCCATTAAACCCCCTTAACTATATA 57.307 33.333 0.00 0.00 0.00 0.86
3537 4387 9.871175 GATTATAAGTCCATTAAACCCCCTTAA 57.129 33.333 0.00 0.00 0.00 1.85
3561 4411 5.302568 TCTCAACAGTTGCAAAATGAAGGAT 59.697 36.000 17.34 0.00 46.37 3.24
3613 4463 9.025041 CATGTGTGACCAGATAGATACCTAATA 57.975 37.037 0.00 0.00 0.00 0.98
3702 4552 7.325660 AGAAGTGTCGCATAAATTGATTGAT 57.674 32.000 0.00 0.00 0.00 2.57
3706 4556 8.039603 TGTTTAGAAGTGTCGCATAAATTGAT 57.960 30.769 0.00 0.00 0.00 2.57
3707 4557 7.428282 TGTTTAGAAGTGTCGCATAAATTGA 57.572 32.000 0.00 0.00 0.00 2.57
3896 4747 2.809119 TCAAAATGAATACACACCGCGT 59.191 40.909 4.92 0.00 0.00 6.01
3928 4779 2.787473 TCGAGTTTCAATGGCTCCAT 57.213 45.000 0.00 0.00 38.46 3.41
3982 4840 1.075374 CAGTCCCACCAGATTCCCAAA 59.925 52.381 0.00 0.00 0.00 3.28
3983 4841 0.698238 CAGTCCCACCAGATTCCCAA 59.302 55.000 0.00 0.00 0.00 4.12
3988 4846 1.687612 CAGCCAGTCCCACCAGATT 59.312 57.895 0.00 0.00 0.00 2.40
4038 4896 1.059098 TCCTTGACTCCTGCACACAT 58.941 50.000 0.00 0.00 0.00 3.21
4064 4931 1.155889 TACACAACAGCAAGCATCCG 58.844 50.000 0.00 0.00 0.00 4.18
4325 5192 3.449018 TCTTCTACTTCATCACTGGCTCC 59.551 47.826 0.00 0.00 0.00 4.70
4352 5219 4.408993 TCATCAGTGCTCATTTTCAACG 57.591 40.909 0.00 0.00 0.00 4.10
4354 5221 8.515695 AATAGATCATCAGTGCTCATTTTCAA 57.484 30.769 0.00 0.00 0.00 2.69
4355 5222 9.049523 GTAATAGATCATCAGTGCTCATTTTCA 57.950 33.333 0.00 0.00 0.00 2.69
4356 5223 9.270640 AGTAATAGATCATCAGTGCTCATTTTC 57.729 33.333 0.00 0.00 0.00 2.29
4358 5225 9.926158 CTAGTAATAGATCATCAGTGCTCATTT 57.074 33.333 0.00 0.00 0.00 2.32
4360 5227 7.546358 GCTAGTAATAGATCATCAGTGCTCAT 58.454 38.462 0.38 0.00 0.00 2.90
4361 5228 6.348868 CGCTAGTAATAGATCATCAGTGCTCA 60.349 42.308 0.38 0.00 0.00 4.26
4362 5229 6.027131 CGCTAGTAATAGATCATCAGTGCTC 58.973 44.000 0.38 0.00 0.00 4.26
4363 5230 5.105957 CCGCTAGTAATAGATCATCAGTGCT 60.106 44.000 0.38 0.00 0.00 4.40
4364 5231 5.098893 CCGCTAGTAATAGATCATCAGTGC 58.901 45.833 0.38 0.00 0.00 4.40
4365 5232 5.416013 TCCCGCTAGTAATAGATCATCAGTG 59.584 44.000 0.38 0.00 0.00 3.66
4366 5233 5.571285 TCCCGCTAGTAATAGATCATCAGT 58.429 41.667 0.38 0.00 0.00 3.41
4367 5234 5.449862 GCTCCCGCTAGTAATAGATCATCAG 60.450 48.000 0.38 0.00 0.00 2.90
4369 5236 4.202070 GGCTCCCGCTAGTAATAGATCATC 60.202 50.000 0.38 0.00 36.09 2.92
4370 5237 3.702045 GGCTCCCGCTAGTAATAGATCAT 59.298 47.826 0.38 0.00 36.09 2.45
4371 5238 3.090037 GGCTCCCGCTAGTAATAGATCA 58.910 50.000 0.38 0.00 36.09 2.92
4372 5239 3.090037 TGGCTCCCGCTAGTAATAGATC 58.910 50.000 0.38 0.00 36.09 2.75
4373 5240 3.093057 CTGGCTCCCGCTAGTAATAGAT 58.907 50.000 0.38 0.00 39.63 1.98
4374 5241 2.515854 CTGGCTCCCGCTAGTAATAGA 58.484 52.381 0.38 0.00 39.63 1.98
4382 5249 0.975556 TTCATCACTGGCTCCCGCTA 60.976 55.000 0.00 0.00 36.09 4.26
4383 5250 2.249413 CTTCATCACTGGCTCCCGCT 62.249 60.000 0.00 0.00 36.09 5.52
4384 5251 1.817099 CTTCATCACTGGCTCCCGC 60.817 63.158 0.00 0.00 0.00 6.13
4385 5252 0.824109 TACTTCATCACTGGCTCCCG 59.176 55.000 0.00 0.00 0.00 5.14
4386 5253 2.102252 CTCTACTTCATCACTGGCTCCC 59.898 54.545 0.00 0.00 0.00 4.30
4387 5254 2.102252 CCTCTACTTCATCACTGGCTCC 59.898 54.545 0.00 0.00 0.00 4.70
4425 5359 2.688507 AGTCGAAAACAGATCGTGCAT 58.311 42.857 0.00 0.00 40.99 3.96
4442 5376 1.069432 GGCCGAAAAGTCCGAAAAGTC 60.069 52.381 0.00 0.00 0.00 3.01
4443 5377 0.949397 GGCCGAAAAGTCCGAAAAGT 59.051 50.000 0.00 0.00 0.00 2.66
4444 5378 0.948678 TGGCCGAAAAGTCCGAAAAG 59.051 50.000 0.00 0.00 0.00 2.27
4445 5379 1.611519 ATGGCCGAAAAGTCCGAAAA 58.388 45.000 0.00 0.00 0.00 2.29
4446 5380 2.078392 GTATGGCCGAAAAGTCCGAAA 58.922 47.619 0.00 0.00 0.00 3.46
4447 5381 1.729284 GTATGGCCGAAAAGTCCGAA 58.271 50.000 0.00 0.00 0.00 4.30
4448 5382 0.458889 CGTATGGCCGAAAAGTCCGA 60.459 55.000 0.00 0.00 0.00 4.55
4449 5383 0.458889 TCGTATGGCCGAAAAGTCCG 60.459 55.000 0.00 0.00 33.15 4.79
4450 5384 1.597663 CATCGTATGGCCGAAAAGTCC 59.402 52.381 0.00 0.00 40.73 3.85
4458 5392 2.732412 AGATCTTCATCGTATGGCCG 57.268 50.000 0.00 0.00 33.75 6.13
4545 5506 4.217550 CACACCAGTTATTTCCGAACCAAT 59.782 41.667 0.00 0.00 0.00 3.16
4549 5510 3.143728 ACCACACCAGTTATTTCCGAAC 58.856 45.455 0.00 0.00 0.00 3.95
4596 5557 8.897872 ACATATTACCTCCGTTCGAAAATAAT 57.102 30.769 0.00 1.40 0.00 1.28
4608 5569 6.100004 CCAAGCTACATACATATTACCTCCG 58.900 44.000 0.00 0.00 0.00 4.63
4640 5706 5.952947 TCCCTTTTAAAACAGAACTGACCAA 59.047 36.000 8.87 0.00 0.00 3.67
4646 5712 6.773200 CCTCTTCTCCCTTTTAAAACAGAACT 59.227 38.462 0.00 0.00 0.00 3.01
4672 5739 4.855340 TCCTCTCTTTGTTTTTGAGGTGT 58.145 39.130 0.00 0.00 43.34 4.16
4674 5741 4.166144 TCCTCCTCTCTTTGTTTTTGAGGT 59.834 41.667 0.00 0.00 43.34 3.85
4684 5751 4.013267 TCTTTGCTTCCTCCTCTCTTTG 57.987 45.455 0.00 0.00 0.00 2.77
4690 5757 3.744660 TCACTTTCTTTGCTTCCTCCTC 58.255 45.455 0.00 0.00 0.00 3.71
4766 5833 5.860182 CAGGAGCACAGTCATGTAATTTTTG 59.140 40.000 0.00 0.00 37.65 2.44
4772 5839 1.278985 CCCAGGAGCACAGTCATGTAA 59.721 52.381 0.00 0.00 37.65 2.41
4773 5840 0.904649 CCCAGGAGCACAGTCATGTA 59.095 55.000 0.00 0.00 37.65 2.29
4789 5856 2.026636 GCCATACAAACTCCACTACCCA 60.027 50.000 0.00 0.00 0.00 4.51
4879 5946 6.015772 GGTTGTTGTATTGGGCTTCTTCTTTA 60.016 38.462 0.00 0.00 0.00 1.85
4896 5973 2.044848 TGTGCGGTGGGTTGTTGT 60.045 55.556 0.00 0.00 0.00 3.32
4911 5988 1.920835 GCCAGGGGAGAGAAGGTGT 60.921 63.158 0.00 0.00 0.00 4.16
5099 6178 2.959484 ATACCTGCTGCTGGCGTGT 61.959 57.895 23.46 8.35 45.43 4.49
5127 6206 0.400670 CTAAAGAGGGGAGGAGGGGG 60.401 65.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.