Multiple sequence alignment - TraesCS6D01G282400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G282400 chr6D 100.000 6224 0 0 1 6224 389705100 389698877 0.000000e+00 11494
1 TraesCS6D01G282400 chr6D 94.359 195 7 4 4367 4560 406391550 406391359 4.720000e-76 296
2 TraesCS6D01G282400 chr6D 97.605 167 4 0 1 167 82143621 82143455 2.840000e-73 287
3 TraesCS6D01G282400 chr6D 97.605 167 4 0 1 167 458129932 458130098 2.840000e-73 287
4 TraesCS6D01G282400 chr6D 85.616 146 17 4 3776 3919 426058309 426058452 3.890000e-32 150
5 TraesCS6D01G282400 chr6B 91.037 3481 198 54 2796 6224 583447771 583444353 0.000000e+00 4595
6 TraesCS6D01G282400 chr6B 90.011 1772 113 36 359 2080 583450473 583448716 0.000000e+00 2233
7 TraesCS6D01G282400 chr6B 95.942 616 17 3 2003 2611 583448721 583448107 0.000000e+00 992
8 TraesCS6D01G282400 chr6B 85.915 142 15 5 3776 3915 641283669 641283807 5.030000e-31 147
9 TraesCS6D01G282400 chr6B 96.429 84 3 0 2629 2712 583447854 583447771 8.410000e-29 139
10 TraesCS6D01G282400 chr6B 88.034 117 12 2 3775 3889 185678557 185678673 3.030000e-28 137
11 TraesCS6D01G282400 chr6A 91.216 2459 144 41 315 2714 536218545 536216100 0.000000e+00 3278
12 TraesCS6D01G282400 chr6A 94.985 1615 66 6 2798 4398 536216100 536214487 0.000000e+00 2519
13 TraesCS6D01G282400 chr6A 89.375 1713 107 32 4559 6217 536214489 536212798 0.000000e+00 2085
14 TraesCS6D01G282400 chr6A 84.354 147 17 6 3776 3919 570921218 570921361 8.410000e-29 139
15 TraesCS6D01G282400 chr7D 96.237 186 5 2 4392 4575 54095337 54095152 2.820000e-78 303
16 TraesCS6D01G282400 chr7D 98.802 167 2 0 1 167 60368399 60368233 1.310000e-76 298
17 TraesCS6D01G282400 chr7D 88.235 136 13 3 3778 3911 602904868 602905002 6.460000e-35 159
18 TraesCS6D01G282400 chr7D 87.705 122 10 5 3778 3895 188579141 188579261 3.030000e-28 137
19 TraesCS6D01G282400 chr7D 85.870 92 13 0 1114 1205 553013333 553013242 1.430000e-16 99
20 TraesCS6D01G282400 chr2D 96.237 186 5 2 4392 4575 272176760 272176575 2.820000e-78 303
21 TraesCS6D01G282400 chr2D 96.237 186 5 2 4392 4575 309243829 309243644 2.820000e-78 303
22 TraesCS6D01G282400 chr2D 96.237 186 5 2 4392 4575 515499464 515499279 2.820000e-78 303
23 TraesCS6D01G282400 chr4D 96.216 185 5 2 4392 4574 452926303 452926119 1.010000e-77 302
24 TraesCS6D01G282400 chr4D 95.187 187 5 3 4384 4569 230473283 230473466 6.100000e-75 292
25 TraesCS6D01G282400 chr4D 94.330 194 6 5 4392 4583 322107287 322107477 6.100000e-75 292
26 TraesCS6D01G282400 chr5D 98.802 167 2 0 1 167 120783379 120783545 1.310000e-76 298
27 TraesCS6D01G282400 chr5D 94.083 169 8 2 1 168 399968972 399968805 8.010000e-64 255
28 TraesCS6D01G282400 chr3D 95.833 168 7 0 1 168 570542231 570542398 7.950000e-69 272
29 TraesCS6D01G282400 chr3D 94.253 87 3 2 2714 2799 136773960 136774045 1.410000e-26 132
30 TraesCS6D01G282400 chr3D 92.683 82 2 4 2731 2812 609106245 609106322 1.420000e-21 115
31 TraesCS6D01G282400 chr1D 96.386 166 5 1 1 166 80658421 80658257 7.950000e-69 272
32 TraesCS6D01G282400 chr7B 94.152 171 6 4 1 167 363222463 363222293 2.230000e-64 257
33 TraesCS6D01G282400 chr7B 88.148 135 13 3 3779 3911 683516274 683516407 2.320000e-34 158
34 TraesCS6D01G282400 chr5A 93.605 172 9 2 1 170 419214440 419214269 8.010000e-64 255
35 TraesCS6D01G282400 chr5A 98.571 70 0 1 2731 2800 532463772 532463704 8.470000e-24 122
36 TraesCS6D01G282400 chr2A 95.556 90 4 0 2714 2803 14286683 14286772 1.810000e-30 145
37 TraesCS6D01G282400 chr4A 93.258 89 3 1 2714 2799 2980651 2980563 1.820000e-25 128
38 TraesCS6D01G282400 chr5B 93.103 87 3 2 2718 2802 591784715 591784800 2.360000e-24 124
39 TraesCS6D01G282400 chr3B 87.156 109 14 0 1097 1205 19049865 19049973 2.360000e-24 124
40 TraesCS6D01G282400 chr1B 94.937 79 1 3 2731 2808 297097555 297097479 3.050000e-23 121
41 TraesCS6D01G282400 chr2B 91.011 89 6 2 2731 2819 133018484 133018398 1.100000e-22 119
42 TraesCS6D01G282400 chr2B 90.000 90 4 5 2731 2816 643184669 643184757 1.830000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G282400 chr6D 389698877 389705100 6223 True 11494.000000 11494 100.000000 1 6224 1 chr6D.!!$R2 6223
1 TraesCS6D01G282400 chr6B 583444353 583450473 6120 True 1989.750000 4595 93.354750 359 6224 4 chr6B.!!$R1 5865
2 TraesCS6D01G282400 chr6A 536212798 536218545 5747 True 2627.333333 3278 91.858667 315 6217 3 chr6A.!!$R1 5902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 781 0.033366 AGTGGCCATTTCGCAAAACC 59.967 50.0 9.72 0.00 0.00 3.27 F
1643 1723 0.457853 TTGTATCGAGTGCGCTCCAC 60.458 55.0 21.21 16.01 45.01 4.02 F
2731 3129 0.034337 CACTCCCTCCGTCCGAAAAA 59.966 55.0 0.00 0.00 0.00 1.94 F
2773 3171 0.110486 TTGAGGGACAAGCTTGGGAC 59.890 55.0 29.18 18.90 34.20 4.46 F
2788 3186 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.0 0.00 0.00 0.00 4.79 F
2796 3194 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.0 0.00 0.00 0.00 3.85 F
3837 4261 0.541863 ACAGCCTTATGCCTAAGCGT 59.458 50.0 3.40 0.00 44.31 5.07 F
4768 5212 1.448985 GGCGTGAGTGCTTTAATCCA 58.551 50.0 0.00 0.00 34.52 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1822 0.105593 CTACCGCATGCATCTGGTCT 59.894 55.000 19.91 3.02 35.93 3.85 R
2754 3152 0.110486 GTCCCAAGCTTGTCCCTCAA 59.890 55.000 24.35 0.00 34.61 3.02 R
4638 5077 0.310543 CAGCCGCAAAACAGCTACAA 59.689 50.000 0.00 0.00 34.38 2.41 R
4750 5194 1.398390 CCTGGATTAAAGCACTCACGC 59.602 52.381 0.00 0.00 0.00 5.34 R
4768 5212 9.479549 AATATAAAATTTGAGACATGTGACCCT 57.520 29.630 1.15 0.00 0.00 4.34 R
4821 5269 0.036010 AAGTTCTCTGCATCCACGGG 60.036 55.000 0.00 0.00 0.00 5.28 R
4871 5319 0.034670 AGCCCAGCTTCATGTTCTCC 60.035 55.000 0.00 0.00 33.89 3.71 R
5785 6267 0.036306 TGAAGAGGTCGGGGAAAAGC 59.964 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.742774 GGCTTTACTGTTGCCACTTTG 58.257 47.619 12.19 0.00 45.46 2.77
26 27 2.100749 GGCTTTACTGTTGCCACTTTGT 59.899 45.455 12.19 0.00 45.46 2.83
27 28 3.372060 GCTTTACTGTTGCCACTTTGTC 58.628 45.455 0.00 0.00 0.00 3.18
28 29 3.617669 CTTTACTGTTGCCACTTTGTCG 58.382 45.455 0.00 0.00 0.00 4.35
29 30 2.319136 TACTGTTGCCACTTTGTCGT 57.681 45.000 0.00 0.00 0.00 4.34
30 31 1.459450 ACTGTTGCCACTTTGTCGTT 58.541 45.000 0.00 0.00 0.00 3.85
31 32 1.816224 ACTGTTGCCACTTTGTCGTTT 59.184 42.857 0.00 0.00 0.00 3.60
32 33 2.230266 ACTGTTGCCACTTTGTCGTTTT 59.770 40.909 0.00 0.00 0.00 2.43
33 34 3.249917 CTGTTGCCACTTTGTCGTTTTT 58.750 40.909 0.00 0.00 0.00 1.94
61 62 7.630242 ATCTTTTGTCAGACTGTTTCTTTGA 57.370 32.000 1.59 0.00 28.96 2.69
62 63 7.630242 TCTTTTGTCAGACTGTTTCTTTGAT 57.370 32.000 1.59 0.00 28.96 2.57
63 64 7.475015 TCTTTTGTCAGACTGTTTCTTTGATG 58.525 34.615 1.59 0.00 28.96 3.07
64 65 5.756195 TTGTCAGACTGTTTCTTTGATGG 57.244 39.130 1.59 0.00 28.96 3.51
65 66 3.565482 TGTCAGACTGTTTCTTTGATGGC 59.435 43.478 1.59 0.00 28.96 4.40
66 67 3.817647 GTCAGACTGTTTCTTTGATGGCT 59.182 43.478 1.59 0.00 28.96 4.75
67 68 3.817084 TCAGACTGTTTCTTTGATGGCTG 59.183 43.478 1.59 0.00 28.96 4.85
68 69 3.567164 CAGACTGTTTCTTTGATGGCTGT 59.433 43.478 0.00 0.00 28.96 4.40
69 70 3.567164 AGACTGTTTCTTTGATGGCTGTG 59.433 43.478 0.00 0.00 0.00 3.66
70 71 3.290710 ACTGTTTCTTTGATGGCTGTGT 58.709 40.909 0.00 0.00 0.00 3.72
71 72 3.067180 ACTGTTTCTTTGATGGCTGTGTG 59.933 43.478 0.00 0.00 0.00 3.82
72 73 2.223782 TGTTTCTTTGATGGCTGTGTGC 60.224 45.455 0.00 0.00 41.94 4.57
73 74 1.689984 TTCTTTGATGGCTGTGTGCA 58.310 45.000 0.00 0.00 45.15 4.57
74 75 1.913778 TCTTTGATGGCTGTGTGCAT 58.086 45.000 0.00 0.00 45.15 3.96
75 76 1.814394 TCTTTGATGGCTGTGTGCATC 59.186 47.619 0.00 0.00 45.15 3.91
76 77 1.816835 CTTTGATGGCTGTGTGCATCT 59.183 47.619 0.00 0.00 45.15 2.90
77 78 1.913778 TTGATGGCTGTGTGCATCTT 58.086 45.000 0.00 0.00 45.15 2.40
78 79 2.785540 TGATGGCTGTGTGCATCTTA 57.214 45.000 0.00 0.00 45.15 2.10
79 80 2.635714 TGATGGCTGTGTGCATCTTAG 58.364 47.619 0.00 0.00 45.15 2.18
80 81 1.332997 GATGGCTGTGTGCATCTTAGC 59.667 52.381 0.00 0.00 45.15 3.09
81 82 0.325933 TGGCTGTGTGCATCTTAGCT 59.674 50.000 12.70 0.00 45.15 3.32
82 83 1.554617 TGGCTGTGTGCATCTTAGCTA 59.445 47.619 12.70 0.00 45.15 3.32
83 84 2.171237 TGGCTGTGTGCATCTTAGCTAT 59.829 45.455 12.70 0.00 45.15 2.97
84 85 2.547211 GGCTGTGTGCATCTTAGCTATG 59.453 50.000 12.70 0.00 45.15 2.23
92 93 2.697654 CATCTTAGCTATGCAGAGGCC 58.302 52.381 10.92 0.00 40.13 5.19
93 94 0.676184 TCTTAGCTATGCAGAGGCCG 59.324 55.000 10.92 0.00 40.13 6.13
94 95 0.320247 CTTAGCTATGCAGAGGCCGG 60.320 60.000 10.92 0.00 40.13 6.13
95 96 1.758440 TTAGCTATGCAGAGGCCGGG 61.758 60.000 10.92 0.00 40.13 5.73
96 97 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
97 98 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
98 99 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
99 100 2.650813 CTATGCAGAGGCCGGGTGTC 62.651 65.000 2.18 0.00 40.13 3.67
106 107 4.699522 GGCCGGGTGTCGCTCTTT 62.700 66.667 2.18 0.00 37.59 2.52
107 108 2.263540 GCCGGGTGTCGCTCTTTA 59.736 61.111 2.18 0.00 37.59 1.85
108 109 1.153429 GCCGGGTGTCGCTCTTTAT 60.153 57.895 2.18 0.00 37.59 1.40
109 110 1.429148 GCCGGGTGTCGCTCTTTATG 61.429 60.000 2.18 0.00 37.59 1.90
110 111 1.429148 CCGGGTGTCGCTCTTTATGC 61.429 60.000 0.00 0.00 37.59 3.14
111 112 0.460284 CGGGTGTCGCTCTTTATGCT 60.460 55.000 0.00 0.00 0.00 3.79
112 113 1.739067 GGGTGTCGCTCTTTATGCTT 58.261 50.000 0.00 0.00 0.00 3.91
113 114 2.084546 GGGTGTCGCTCTTTATGCTTT 58.915 47.619 0.00 0.00 0.00 3.51
114 115 2.159517 GGGTGTCGCTCTTTATGCTTTG 60.160 50.000 0.00 0.00 0.00 2.77
115 116 2.484264 GGTGTCGCTCTTTATGCTTTGT 59.516 45.455 0.00 0.00 0.00 2.83
116 117 3.682858 GGTGTCGCTCTTTATGCTTTGTA 59.317 43.478 0.00 0.00 0.00 2.41
117 118 4.332819 GGTGTCGCTCTTTATGCTTTGTAT 59.667 41.667 0.00 0.00 0.00 2.29
118 119 5.493735 GTGTCGCTCTTTATGCTTTGTATC 58.506 41.667 0.00 0.00 0.00 2.24
119 120 4.570772 TGTCGCTCTTTATGCTTTGTATCC 59.429 41.667 0.00 0.00 0.00 2.59
120 121 3.802139 TCGCTCTTTATGCTTTGTATCCG 59.198 43.478 0.00 0.00 0.00 4.18
121 122 3.555956 CGCTCTTTATGCTTTGTATCCGT 59.444 43.478 0.00 0.00 0.00 4.69
122 123 4.034048 CGCTCTTTATGCTTTGTATCCGTT 59.966 41.667 0.00 0.00 0.00 4.44
123 124 5.502606 GCTCTTTATGCTTTGTATCCGTTC 58.497 41.667 0.00 0.00 0.00 3.95
124 125 5.712217 TCTTTATGCTTTGTATCCGTTCG 57.288 39.130 0.00 0.00 0.00 3.95
125 126 5.412640 TCTTTATGCTTTGTATCCGTTCGA 58.587 37.500 0.00 0.00 0.00 3.71
126 127 6.046593 TCTTTATGCTTTGTATCCGTTCGAT 58.953 36.000 0.00 0.00 34.73 3.59
127 128 5.651172 TTATGCTTTGTATCCGTTCGATG 57.349 39.130 0.00 0.00 31.92 3.84
128 129 1.663643 TGCTTTGTATCCGTTCGATGC 59.336 47.619 0.00 0.00 34.38 3.91
129 130 1.933853 GCTTTGTATCCGTTCGATGCT 59.066 47.619 0.00 0.00 34.84 3.79
130 131 3.120792 GCTTTGTATCCGTTCGATGCTA 58.879 45.455 0.00 0.00 34.84 3.49
131 132 3.060473 GCTTTGTATCCGTTCGATGCTAC 60.060 47.826 0.00 0.00 34.84 3.58
132 133 3.786516 TTGTATCCGTTCGATGCTACA 57.213 42.857 0.00 0.00 34.84 2.74
133 134 4.316205 TTGTATCCGTTCGATGCTACAT 57.684 40.909 0.00 0.00 34.84 2.29
134 135 4.316205 TGTATCCGTTCGATGCTACATT 57.684 40.909 0.00 0.00 34.84 2.71
135 136 4.689071 TGTATCCGTTCGATGCTACATTT 58.311 39.130 0.00 0.00 34.84 2.32
136 137 5.113383 TGTATCCGTTCGATGCTACATTTT 58.887 37.500 0.00 0.00 34.84 1.82
137 138 4.536364 ATCCGTTCGATGCTACATTTTG 57.464 40.909 0.00 0.00 0.00 2.44
138 139 3.591023 TCCGTTCGATGCTACATTTTGA 58.409 40.909 0.00 0.00 0.00 2.69
139 140 3.616821 TCCGTTCGATGCTACATTTTGAG 59.383 43.478 0.00 0.00 0.00 3.02
140 141 3.370978 CCGTTCGATGCTACATTTTGAGT 59.629 43.478 0.00 0.00 0.00 3.41
141 142 4.142902 CCGTTCGATGCTACATTTTGAGTT 60.143 41.667 0.00 0.00 0.00 3.01
142 143 5.062934 CCGTTCGATGCTACATTTTGAGTTA 59.937 40.000 0.00 0.00 0.00 2.24
143 144 6.401688 CCGTTCGATGCTACATTTTGAGTTAA 60.402 38.462 0.00 0.00 0.00 2.01
144 145 7.180079 CGTTCGATGCTACATTTTGAGTTAAT 58.820 34.615 0.00 0.00 0.00 1.40
145 146 8.325282 CGTTCGATGCTACATTTTGAGTTAATA 58.675 33.333 0.00 0.00 0.00 0.98
146 147 9.982291 GTTCGATGCTACATTTTGAGTTAATAA 57.018 29.630 0.00 0.00 0.00 1.40
151 152 8.667987 TGCTACATTTTGAGTTAATAAAAGCG 57.332 30.769 0.00 0.00 0.00 4.68
152 153 7.272515 TGCTACATTTTGAGTTAATAAAAGCGC 59.727 33.333 0.00 0.00 0.00 5.92
153 154 6.944557 ACATTTTGAGTTAATAAAAGCGCC 57.055 33.333 2.29 0.00 0.00 6.53
154 155 5.867174 ACATTTTGAGTTAATAAAAGCGCCC 59.133 36.000 2.29 0.00 0.00 6.13
155 156 5.715434 TTTTGAGTTAATAAAAGCGCCCT 57.285 34.783 2.29 0.00 0.00 5.19
156 157 5.715434 TTTGAGTTAATAAAAGCGCCCTT 57.285 34.783 2.29 0.00 0.00 3.95
157 158 5.715434 TTGAGTTAATAAAAGCGCCCTTT 57.285 34.783 2.29 7.08 42.93 3.11
158 159 6.821031 TTGAGTTAATAAAAGCGCCCTTTA 57.179 33.333 2.29 9.36 40.30 1.85
159 160 7.399245 TTGAGTTAATAAAAGCGCCCTTTAT 57.601 32.000 15.73 15.73 40.30 1.40
160 161 7.023197 TGAGTTAATAAAAGCGCCCTTTATC 57.977 36.000 19.70 11.78 40.30 1.75
161 162 6.056428 AGTTAATAAAAGCGCCCTTTATCG 57.944 37.500 19.70 0.00 40.30 2.92
162 163 3.982576 AATAAAAGCGCCCTTTATCGG 57.017 42.857 19.70 0.00 40.30 4.18
163 164 2.695127 TAAAAGCGCCCTTTATCGGA 57.305 45.000 2.29 0.00 40.30 4.55
164 165 1.828979 AAAAGCGCCCTTTATCGGAA 58.171 45.000 2.29 0.00 40.30 4.30
165 166 1.828979 AAAGCGCCCTTTATCGGAAA 58.171 45.000 2.29 0.00 39.44 3.13
166 167 1.828979 AAGCGCCCTTTATCGGAAAA 58.171 45.000 2.29 0.00 0.00 2.29
167 168 2.052782 AGCGCCCTTTATCGGAAAAT 57.947 45.000 2.29 0.00 0.00 1.82
168 169 1.676006 AGCGCCCTTTATCGGAAAATG 59.324 47.619 2.29 0.00 0.00 2.32
169 170 1.404035 GCGCCCTTTATCGGAAAATGT 59.596 47.619 0.00 0.00 0.00 2.71
170 171 2.794631 GCGCCCTTTATCGGAAAATGTG 60.795 50.000 0.00 0.00 0.00 3.21
171 172 2.422127 CGCCCTTTATCGGAAAATGTGT 59.578 45.455 0.00 0.00 0.00 3.72
172 173 3.623960 CGCCCTTTATCGGAAAATGTGTA 59.376 43.478 0.00 0.00 0.00 2.90
173 174 4.095185 CGCCCTTTATCGGAAAATGTGTAA 59.905 41.667 0.00 0.00 0.00 2.41
174 175 5.337554 GCCCTTTATCGGAAAATGTGTAAC 58.662 41.667 0.00 0.00 37.35 2.50
175 176 5.677852 GCCCTTTATCGGAAAATGTGTAACC 60.678 44.000 0.00 0.00 34.36 2.85
176 177 5.163591 CCCTTTATCGGAAAATGTGTAACCC 60.164 44.000 0.00 0.00 34.36 4.11
177 178 5.650703 CCTTTATCGGAAAATGTGTAACCCT 59.349 40.000 0.00 0.00 34.36 4.34
178 179 6.404293 CCTTTATCGGAAAATGTGTAACCCTG 60.404 42.308 0.00 0.00 34.36 4.45
179 180 2.156098 TCGGAAAATGTGTAACCCTGC 58.844 47.619 0.00 0.00 34.36 4.85
180 181 1.883275 CGGAAAATGTGTAACCCTGCA 59.117 47.619 0.00 0.00 34.36 4.41
181 182 2.294791 CGGAAAATGTGTAACCCTGCAA 59.705 45.455 0.00 0.00 34.36 4.08
182 183 3.243569 CGGAAAATGTGTAACCCTGCAAA 60.244 43.478 0.00 0.00 34.36 3.68
183 184 4.698575 GGAAAATGTGTAACCCTGCAAAA 58.301 39.130 0.00 0.00 34.36 2.44
184 185 5.119694 GGAAAATGTGTAACCCTGCAAAAA 58.880 37.500 0.00 0.00 34.36 1.94
209 210 7.566760 AAAATCGTATGCATAAAGTCATCCA 57.433 32.000 8.28 0.00 0.00 3.41
210 211 7.750229 AAATCGTATGCATAAAGTCATCCAT 57.250 32.000 8.28 0.00 0.00 3.41
211 212 8.846943 AAATCGTATGCATAAAGTCATCCATA 57.153 30.769 8.28 0.00 0.00 2.74
212 213 8.846943 AATCGTATGCATAAAGTCATCCATAA 57.153 30.769 8.28 0.00 0.00 1.90
213 214 7.889589 TCGTATGCATAAAGTCATCCATAAG 57.110 36.000 8.28 0.00 0.00 1.73
214 215 7.666623 TCGTATGCATAAAGTCATCCATAAGA 58.333 34.615 8.28 0.00 0.00 2.10
215 216 8.314021 TCGTATGCATAAAGTCATCCATAAGAT 58.686 33.333 8.28 0.00 34.66 2.40
216 217 8.939929 CGTATGCATAAAGTCATCCATAAGATT 58.060 33.333 8.28 0.00 30.59 2.40
220 221 9.066892 TGCATAAAGTCATCCATAAGATTTACC 57.933 33.333 0.00 0.00 30.59 2.85
221 222 8.515414 GCATAAAGTCATCCATAAGATTTACCC 58.485 37.037 0.00 0.00 30.59 3.69
222 223 9.799106 CATAAAGTCATCCATAAGATTTACCCT 57.201 33.333 0.00 0.00 30.59 4.34
224 225 7.698163 AAGTCATCCATAAGATTTACCCTCT 57.302 36.000 0.00 0.00 30.59 3.69
225 226 7.698163 AGTCATCCATAAGATTTACCCTCTT 57.302 36.000 0.00 0.00 36.87 2.85
226 227 8.798975 AGTCATCCATAAGATTTACCCTCTTA 57.201 34.615 0.00 0.00 39.02 2.10
227 228 8.652290 AGTCATCCATAAGATTTACCCTCTTAC 58.348 37.037 0.00 0.00 37.87 2.34
228 229 7.599245 GTCATCCATAAGATTTACCCTCTTACG 59.401 40.741 0.00 0.00 37.87 3.18
229 230 6.415206 TCCATAAGATTTACCCTCTTACGG 57.585 41.667 0.04 0.04 39.02 4.02
230 231 5.901276 TCCATAAGATTTACCCTCTTACGGT 59.099 40.000 5.42 0.00 38.85 4.83
231 232 7.068702 TCCATAAGATTTACCCTCTTACGGTA 58.931 38.462 5.42 0.00 38.85 4.02
232 233 7.731688 TCCATAAGATTTACCCTCTTACGGTAT 59.268 37.037 5.42 0.00 38.85 2.73
233 234 8.373220 CCATAAGATTTACCCTCTTACGGTATT 58.627 37.037 0.00 0.00 37.87 1.89
234 235 9.420551 CATAAGATTTACCCTCTTACGGTATTC 57.579 37.037 0.00 0.00 37.87 1.75
235 236 7.427989 AAGATTTACCCTCTTACGGTATTCA 57.572 36.000 0.00 0.00 35.78 2.57
236 237 7.427989 AGATTTACCCTCTTACGGTATTCAA 57.572 36.000 0.00 0.00 35.78 2.69
237 238 7.498443 AGATTTACCCTCTTACGGTATTCAAG 58.502 38.462 0.00 0.00 35.78 3.02
238 239 6.610075 TTTACCCTCTTACGGTATTCAAGT 57.390 37.500 0.00 0.00 35.78 3.16
239 240 7.716799 TTTACCCTCTTACGGTATTCAAGTA 57.283 36.000 0.00 0.00 35.78 2.24
240 241 5.848833 ACCCTCTTACGGTATTCAAGTAG 57.151 43.478 0.00 0.00 0.00 2.57
241 242 4.099113 ACCCTCTTACGGTATTCAAGTAGC 59.901 45.833 0.00 0.00 0.00 3.58
242 243 4.501058 CCCTCTTACGGTATTCAAGTAGCC 60.501 50.000 0.00 0.00 0.00 3.93
243 244 4.098960 CCTCTTACGGTATTCAAGTAGCCA 59.901 45.833 0.00 0.00 0.00 4.75
244 245 5.394883 CCTCTTACGGTATTCAAGTAGCCAA 60.395 44.000 0.00 0.00 0.00 4.52
245 246 6.229936 TCTTACGGTATTCAAGTAGCCAAT 57.770 37.500 0.00 0.00 0.00 3.16
246 247 7.350744 TCTTACGGTATTCAAGTAGCCAATA 57.649 36.000 0.00 0.00 0.00 1.90
247 248 7.959175 TCTTACGGTATTCAAGTAGCCAATAT 58.041 34.615 0.00 0.00 0.00 1.28
248 249 8.426489 TCTTACGGTATTCAAGTAGCCAATATT 58.574 33.333 0.00 0.00 0.00 1.28
249 250 8.967664 TTACGGTATTCAAGTAGCCAATATTT 57.032 30.769 0.00 0.00 0.00 1.40
252 253 9.569122 ACGGTATTCAAGTAGCCAATATTTATT 57.431 29.630 0.00 0.00 0.00 1.40
258 259 8.815565 TCAAGTAGCCAATATTTATTTCCACA 57.184 30.769 0.00 0.00 0.00 4.17
259 260 9.249053 TCAAGTAGCCAATATTTATTTCCACAA 57.751 29.630 0.00 0.00 0.00 3.33
265 266 9.956640 AGCCAATATTTATTTCCACAATTCAAA 57.043 25.926 0.00 0.00 0.00 2.69
296 297 8.928270 TTATGTGTGTAACCGTTTTGATTTTT 57.072 26.923 0.00 0.00 34.36 1.94
324 325 2.034179 GCCCTACGCACTTCAACTTTTT 59.966 45.455 0.00 0.00 37.47 1.94
327 328 5.390613 CCCTACGCACTTCAACTTTTTATG 58.609 41.667 0.00 0.00 0.00 1.90
328 329 4.851558 CCTACGCACTTCAACTTTTTATGC 59.148 41.667 0.00 0.00 0.00 3.14
330 331 3.317993 ACGCACTTCAACTTTTTATGCCT 59.682 39.130 0.00 0.00 0.00 4.75
334 335 5.177511 GCACTTCAACTTTTTATGCCTTTCC 59.822 40.000 0.00 0.00 0.00 3.13
342 343 3.817148 TTTATGCCTTTCCGTTTCGAC 57.183 42.857 0.00 0.00 0.00 4.20
378 379 1.806623 CGCTTTTCCCCGATCCACTAG 60.807 57.143 0.00 0.00 0.00 2.57
390 391 3.599343 GATCCACTAGTTGATGCACACA 58.401 45.455 13.86 0.00 0.00 3.72
432 433 0.108186 CCCATGCAGAGAACGTAGCA 60.108 55.000 0.00 0.00 41.73 3.49
446 447 0.392461 GTAGCAACTCGGCCAATCCA 60.392 55.000 2.24 0.00 34.01 3.41
550 553 1.496403 GCCGGTTAGTCCTTATGCGC 61.496 60.000 1.90 0.00 0.00 6.09
557 560 5.288712 CGGTTAGTCCTTATGCGCATAATAG 59.711 44.000 35.75 29.32 33.29 1.73
564 567 9.502091 AGTCCTTATGCGCATAATAGATTTAAA 57.498 29.630 35.75 16.97 33.29 1.52
626 637 7.886970 AGCCAGTAGATTAATATCAACATGCAT 59.113 33.333 0.00 0.00 32.95 3.96
731 749 4.766404 AAGCGGGACTCAAACAAAATAG 57.234 40.909 0.00 0.00 0.00 1.73
733 751 4.589908 AGCGGGACTCAAACAAAATAGAT 58.410 39.130 0.00 0.00 0.00 1.98
741 760 8.023706 GGACTCAAACAAAATAGATGGTTTCTC 58.976 37.037 0.00 0.00 35.79 2.87
762 781 0.033366 AGTGGCCATTTCGCAAAACC 59.967 50.000 9.72 0.00 0.00 3.27
827 852 4.344865 ACCATCACCACCACCGCC 62.345 66.667 0.00 0.00 0.00 6.13
880 916 2.203337 CACCACCACCACCACCAG 60.203 66.667 0.00 0.00 0.00 4.00
1024 1061 3.347590 TCCCGCTCCTCCTCCTCA 61.348 66.667 0.00 0.00 0.00 3.86
1098 1141 3.315142 GATGGTGCACCGGCTCTCA 62.315 63.158 30.07 11.94 41.91 3.27
1110 1153 4.544689 CTCTCAGACGAGGCGCGG 62.545 72.222 16.41 0.00 46.49 6.46
1322 1370 4.503314 CGGCCGTCGGGTCTTACC 62.503 72.222 19.50 3.20 35.04 2.85
1381 1429 6.630071 TGTTAATGCAGAAGCTTATTTTCCC 58.370 36.000 0.00 0.00 42.74 3.97
1390 1438 6.489361 CAGAAGCTTATTTTCCCATGCTCTAT 59.511 38.462 0.00 0.00 0.00 1.98
1392 1440 6.645790 AGCTTATTTTCCCATGCTCTATTG 57.354 37.500 0.00 0.00 0.00 1.90
1396 1444 4.591321 TTTTCCCATGCTCTATTGGACT 57.409 40.909 0.00 0.00 30.73 3.85
1399 1447 3.114606 TCCCATGCTCTATTGGACTCAA 58.885 45.455 0.00 0.00 37.28 3.02
1408 1456 8.635765 TGCTCTATTGGACTCAATTAGTTTTT 57.364 30.769 0.00 0.00 42.90 1.94
1409 1457 9.733556 TGCTCTATTGGACTCAATTAGTTTTTA 57.266 29.630 0.00 0.00 42.90 1.52
1417 1465 9.485206 TGGACTCAATTAGTTTTTAGAGTACAC 57.515 33.333 0.00 0.00 40.84 2.90
1450 1516 3.696051 AGAGAAGTTGCTTTGCTTTGTGA 59.304 39.130 0.00 0.00 0.00 3.58
1452 1518 2.877043 AGTTGCTTTGCTTTGTGAGG 57.123 45.000 0.00 0.00 0.00 3.86
1453 1519 2.102578 AGTTGCTTTGCTTTGTGAGGT 58.897 42.857 0.00 0.00 0.00 3.85
1461 1527 2.992593 TGCTTTGTGAGGTGTGTGTTA 58.007 42.857 0.00 0.00 0.00 2.41
1475 1554 6.650807 AGGTGTGTGTTACATTGTGAATCTAG 59.349 38.462 0.00 0.00 42.24 2.43
1526 1606 5.238583 ACTAATGGTGTTACTTCTGTCTGC 58.761 41.667 0.00 0.00 0.00 4.26
1636 1716 2.205074 CCCTGTGATTGTATCGAGTGC 58.795 52.381 0.00 0.00 0.00 4.40
1643 1723 0.457853 TTGTATCGAGTGCGCTCCAC 60.458 55.000 21.21 16.01 45.01 4.02
1726 1806 1.676529 CTGCAGATGCTGGATTTGGAG 59.323 52.381 8.42 6.79 42.66 3.86
1742 1822 3.885724 TGGAGATGCTCGTGTCAATTA 57.114 42.857 0.00 0.00 0.00 1.40
1951 2033 5.261216 GTTCCATTCAATTTAGGGGAGACA 58.739 41.667 0.00 0.00 0.00 3.41
1992 2075 6.071952 CCATGTTAGTTTTGCACCTTGATACT 60.072 38.462 0.00 0.00 0.00 2.12
2041 2198 6.201425 CACAATAACTTGAGCTGCACAATTTT 59.799 34.615 17.33 13.51 36.20 1.82
2162 2319 6.878317 TGATAGAAATACACAGACAAGAGGG 58.122 40.000 0.00 0.00 0.00 4.30
2202 2359 5.752098 GCAGTTTTAGTGCTTATTTGCAG 57.248 39.130 0.00 0.00 44.20 4.41
2526 2683 7.840931 TGTCATTGCTCTCTCTATGAGTTTAA 58.159 34.615 0.00 0.00 43.13 1.52
2549 2706 7.559590 AAGCTTGTATTCTATTACTTGGCAG 57.440 36.000 0.00 0.00 0.00 4.85
2562 2725 4.713824 ACTTGGCAGATCACAATTGATG 57.286 40.909 13.59 7.05 42.95 3.07
2589 2752 2.625823 CCGCGTGTGGGCATTCTTT 61.626 57.895 4.92 0.00 0.00 2.52
2598 2761 3.119531 TGTGGGCATTCTTTATTTCTGCG 60.120 43.478 0.00 0.00 33.69 5.18
2619 2967 3.364964 CGTGTTTTCTGCTGTGGGTATTC 60.365 47.826 0.00 0.00 0.00 1.75
2620 2968 3.568007 GTGTTTTCTGCTGTGGGTATTCA 59.432 43.478 0.00 0.00 0.00 2.57
2714 3112 4.677584 TGTTACCATTCTTTGTGTTGCAC 58.322 39.130 0.00 0.00 34.56 4.57
2715 3113 4.400884 TGTTACCATTCTTTGTGTTGCACT 59.599 37.500 0.00 0.00 35.11 4.40
2716 3114 3.715628 ACCATTCTTTGTGTTGCACTC 57.284 42.857 0.00 0.00 35.11 3.51
2717 3115 2.362077 ACCATTCTTTGTGTTGCACTCC 59.638 45.455 0.00 0.00 35.11 3.85
2718 3116 2.288395 CCATTCTTTGTGTTGCACTCCC 60.288 50.000 0.00 0.00 35.11 4.30
2719 3117 2.435372 TTCTTTGTGTTGCACTCCCT 57.565 45.000 0.00 0.00 35.11 4.20
2720 3118 1.967319 TCTTTGTGTTGCACTCCCTC 58.033 50.000 0.00 0.00 35.11 4.30
2721 3119 0.954452 CTTTGTGTTGCACTCCCTCC 59.046 55.000 0.00 0.00 35.11 4.30
2722 3120 0.817634 TTTGTGTTGCACTCCCTCCG 60.818 55.000 0.00 0.00 35.11 4.63
2723 3121 1.978455 TTGTGTTGCACTCCCTCCGT 61.978 55.000 0.00 0.00 35.11 4.69
2724 3122 1.668151 GTGTTGCACTCCCTCCGTC 60.668 63.158 0.00 0.00 0.00 4.79
2725 3123 2.047179 GTTGCACTCCCTCCGTCC 60.047 66.667 0.00 0.00 0.00 4.79
2726 3124 3.691342 TTGCACTCCCTCCGTCCG 61.691 66.667 0.00 0.00 0.00 4.79
2727 3125 4.671590 TGCACTCCCTCCGTCCGA 62.672 66.667 0.00 0.00 0.00 4.55
2728 3126 3.379445 GCACTCCCTCCGTCCGAA 61.379 66.667 0.00 0.00 0.00 4.30
2729 3127 2.939261 GCACTCCCTCCGTCCGAAA 61.939 63.158 0.00 0.00 0.00 3.46
2730 3128 1.669440 CACTCCCTCCGTCCGAAAA 59.331 57.895 0.00 0.00 0.00 2.29
2731 3129 0.034337 CACTCCCTCCGTCCGAAAAA 59.966 55.000 0.00 0.00 0.00 1.94
2732 3130 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2733 3131 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2734 3132 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2735 3133 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2736 3134 1.338389 CCCTCCGTCCGAAAAAGCTTA 60.338 52.381 0.00 0.00 0.00 3.09
2737 3135 2.000447 CCTCCGTCCGAAAAAGCTTAG 59.000 52.381 0.00 0.00 0.00 2.18
2738 3136 2.612221 CCTCCGTCCGAAAAAGCTTAGT 60.612 50.000 0.00 0.00 0.00 2.24
2739 3137 2.409975 TCCGTCCGAAAAAGCTTAGTG 58.590 47.619 0.00 0.00 0.00 2.74
2740 3138 1.136057 CCGTCCGAAAAAGCTTAGTGC 60.136 52.381 0.00 0.00 43.29 4.40
2756 3154 7.126726 GCTTAGTGCTAGATACATCCATTTG 57.873 40.000 0.00 0.00 38.95 2.32
2757 3155 6.931281 GCTTAGTGCTAGATACATCCATTTGA 59.069 38.462 0.00 0.00 38.95 2.69
2758 3156 7.117523 GCTTAGTGCTAGATACATCCATTTGAG 59.882 40.741 0.00 0.00 38.95 3.02
2759 3157 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
2760 3158 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2761 3159 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2762 3160 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2763 3161 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2764 3162 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2765 3163 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2766 3164 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
2767 3165 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
2768 3166 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
2769 3167 2.517959 TCCATTTGAGGGACAAGCTTG 58.482 47.619 24.84 24.84 39.77 4.01
2770 3168 1.547372 CCATTTGAGGGACAAGCTTGG 59.453 52.381 29.18 12.28 39.77 3.61
2771 3169 1.547372 CATTTGAGGGACAAGCTTGGG 59.453 52.381 29.18 6.83 39.77 4.12
2772 3170 0.850100 TTTGAGGGACAAGCTTGGGA 59.150 50.000 29.18 4.51 39.77 4.37
2773 3171 0.110486 TTGAGGGACAAGCTTGGGAC 59.890 55.000 29.18 18.90 34.20 4.46
2774 3172 1.059584 TGAGGGACAAGCTTGGGACA 61.060 55.000 29.18 17.71 0.00 4.02
2775 3173 4.092026 TTGAGGGACAAGCTTGGGACAA 62.092 50.000 29.18 21.59 37.48 3.18
2776 3174 5.893518 TTGAGGGACAAGCTTGGGACAAG 62.894 52.174 29.18 3.71 37.48 3.16
2786 3184 3.811031 TGGGACAAGCTTTTTCGGA 57.189 47.368 0.00 0.00 31.92 4.55
2787 3185 1.314730 TGGGACAAGCTTTTTCGGAC 58.685 50.000 0.00 0.00 31.92 4.79
2788 3186 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
2789 3187 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
2790 3188 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2791 3189 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
2792 3190 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2793 3191 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2794 3192 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2795 3193 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2796 3194 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
2797 3195 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
2798 3196 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
2799 3197 2.734755 TTTCGGACGGAGGGAGTATA 57.265 50.000 0.00 0.00 0.00 1.47
2800 3198 2.965671 TTCGGACGGAGGGAGTATAT 57.034 50.000 0.00 0.00 0.00 0.86
2801 3199 2.486472 TCGGACGGAGGGAGTATATC 57.514 55.000 0.00 0.00 0.00 1.63
3178 3588 3.244561 TGTGAGTTCCTTGGAATGGTCTC 60.245 47.826 5.32 7.83 35.58 3.36
3184 3594 6.023603 AGTTCCTTGGAATGGTCTCTAGTTA 58.976 40.000 5.32 0.00 31.98 2.24
3185 3595 6.500751 AGTTCCTTGGAATGGTCTCTAGTTAA 59.499 38.462 5.32 0.00 31.98 2.01
3256 3667 2.369394 CCTCCCAGTCAAACTTATGCC 58.631 52.381 0.00 0.00 0.00 4.40
3387 3798 1.373497 CTGTCACTGTCGAGGTGGC 60.373 63.158 13.93 13.93 39.44 5.01
3416 3827 3.386402 CCCCTTTACAGATCTCTCACTCC 59.614 52.174 0.00 0.00 0.00 3.85
3462 3873 8.984891 TCCATTATAAATTTGCAGTTTGACAG 57.015 30.769 0.00 0.00 0.00 3.51
3612 4023 6.344500 ACATTTTCATTTGCACTGGTTTGTA 58.656 32.000 0.00 0.00 0.00 2.41
3663 4074 6.077838 GTGCCAACTGTAACTCTTAATTTCG 58.922 40.000 0.00 0.00 0.00 3.46
3683 4094 2.795681 CGCTGCAAACAAGAGCTTTCAA 60.796 45.455 0.00 0.00 0.00 2.69
3774 4185 2.627221 AGTTATGTTGTGTGCATTGCCA 59.373 40.909 6.12 0.86 0.00 4.92
3791 4202 5.991933 TTGCCAAGCATTGTTTATAAGGA 57.008 34.783 0.00 0.00 46.99 3.36
3827 4251 1.026718 GCGAGCACCAACAGCCTTAT 61.027 55.000 0.00 0.00 0.00 1.73
3837 4261 0.541863 ACAGCCTTATGCCTAAGCGT 59.458 50.000 3.40 0.00 44.31 5.07
3911 4335 3.634397 TCAAAGGCAGGACTCCTTATG 57.366 47.619 0.00 0.00 42.75 1.90
4095 4520 2.910688 ACAGATATAGTTGGCGGGTG 57.089 50.000 0.00 0.00 0.00 4.61
4185 4611 9.780186 AGGCTCATCTATTAAAAGTTGGTATAC 57.220 33.333 0.00 0.00 0.00 1.47
4234 4661 4.391830 TGCGAACTAAACCTGTCATCAATC 59.608 41.667 0.00 0.00 0.00 2.67
4316 4743 8.540507 AACTATGAGAGTACCATTAGTGATGT 57.459 34.615 0.00 0.00 37.44 3.06
4350 4777 2.485814 GACAGCTGAGCCCTTTTGTAAG 59.514 50.000 23.35 0.00 0.00 2.34
4370 4797 2.170738 TGCTCACAGCGCATAAACC 58.829 52.632 11.47 0.00 46.26 3.27
4404 4831 7.990886 TGATTTGTTGTAACATATACTCCCTCC 59.009 37.037 0.00 0.00 38.95 4.30
4417 4844 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
4418 4845 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4443 4870 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
4444 4871 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
4512 4939 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4513 4940 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
4516 4943 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
4602 5039 3.635836 TGTTTGGCAGATGTGTCATTTCA 59.364 39.130 0.00 0.00 38.36 2.69
4663 5102 2.335011 GTTTTGCGGCTGGGTGAC 59.665 61.111 0.00 0.00 0.00 3.67
4682 5126 6.293845 GGGTGACATCATCTCATTTGCTAATC 60.294 42.308 0.00 0.00 0.00 1.75
4733 5177 2.869636 GCTGTTCAGAAGTCACCAGAGG 60.870 54.545 3.84 0.00 0.00 3.69
4750 5194 4.768968 CCAGAGGCTATTGGAATTATTGGG 59.231 45.833 11.15 0.00 36.55 4.12
4768 5212 1.448985 GGCGTGAGTGCTTTAATCCA 58.551 50.000 0.00 0.00 34.52 3.41
4773 5217 3.010420 GTGAGTGCTTTAATCCAGGGTC 58.990 50.000 0.00 0.00 0.00 4.46
4775 5219 3.010420 GAGTGCTTTAATCCAGGGTCAC 58.990 50.000 0.00 0.00 0.00 3.67
4776 5220 2.375174 AGTGCTTTAATCCAGGGTCACA 59.625 45.455 0.00 0.00 0.00 3.58
4792 5240 7.339212 CCAGGGTCACATGTCTCAAATTTTATA 59.661 37.037 0.00 0.00 0.00 0.98
4913 5361 3.446516 GGTACCGGTCTGAATGTAAGTCT 59.553 47.826 12.40 0.00 0.00 3.24
4923 5371 7.873505 GGTCTGAATGTAAGTCTGAAACTACTT 59.126 37.037 0.00 0.00 40.44 2.24
4924 5372 9.909644 GTCTGAATGTAAGTCTGAAACTACTTA 57.090 33.333 0.00 0.00 40.44 2.24
4930 5378 9.826574 ATGTAAGTCTGAAACTACTTAACAACA 57.173 29.630 0.00 0.00 39.28 3.33
4938 5386 9.781834 CTGAAACTACTTAACAACAAATCACAA 57.218 29.630 0.00 0.00 0.00 3.33
4952 5400 7.687941 ACAAATCACAATTAGTACCTTCCAG 57.312 36.000 0.00 0.00 0.00 3.86
4956 5404 5.790593 TCACAATTAGTACCTTCCAGTCAC 58.209 41.667 0.00 0.00 0.00 3.67
4980 5428 5.879237 TCCATGAAACATTAACGCTCATTC 58.121 37.500 0.00 0.00 0.00 2.67
4989 5437 4.497291 TTAACGCTCATTCCCCTTGTAT 57.503 40.909 0.00 0.00 0.00 2.29
5022 5470 0.102663 TTGACAACAGCACGACGGTA 59.897 50.000 0.00 0.00 0.00 4.02
5026 5474 3.230522 AACAGCACGACGGTACCCC 62.231 63.158 6.25 0.00 0.00 4.95
5163 5611 2.460918 CCGTCGAACTTACATAGGCTG 58.539 52.381 0.00 0.00 0.00 4.85
5251 5699 8.318412 TCAGCAACTGAATAAACCTAACTGATA 58.682 33.333 0.00 0.00 37.57 2.15
5253 5701 9.167311 AGCAACTGAATAAACCTAACTGATAAG 57.833 33.333 0.00 0.00 0.00 1.73
5281 5729 5.353400 CCCTGTATATCGCATAAGTCTCGTA 59.647 44.000 0.00 0.00 0.00 3.43
5329 5777 3.129287 CGAGTTTAAGCGTAGGGGTAGAA 59.871 47.826 0.00 0.00 0.00 2.10
5330 5778 4.428209 GAGTTTAAGCGTAGGGGTAGAAC 58.572 47.826 0.00 0.00 0.00 3.01
5365 5813 2.014594 GAATGGGTCATTCGCCGAC 58.985 57.895 5.09 0.00 40.33 4.79
5366 5814 0.462047 GAATGGGTCATTCGCCGACT 60.462 55.000 5.09 0.00 40.33 4.18
5479 5936 2.300066 GCAAAAACCGTGAAGCCGC 61.300 57.895 0.00 0.00 0.00 6.53
5494 5957 1.441729 CCGCAGGCGAGGATAAGAA 59.558 57.895 16.21 0.00 46.14 2.52
5506 5969 4.675671 CGAGGATAAGAAGAAGAGCGTGTT 60.676 45.833 0.00 0.00 0.00 3.32
5507 5970 5.153950 AGGATAAGAAGAAGAGCGTGTTT 57.846 39.130 0.00 0.00 0.00 2.83
5561 6028 2.877691 GCATGTGCGAACCCCTTC 59.122 61.111 0.00 0.00 0.00 3.46
5577 6044 0.892358 CTTCTTCCCAAGCTGCAGCA 60.892 55.000 38.24 16.73 45.16 4.41
5648 6124 4.082523 CCGCTCTCCCAAAGCCGA 62.083 66.667 0.00 0.00 36.36 5.54
5756 6238 3.474570 GGAGAGGCCTCGCACCAT 61.475 66.667 33.61 14.14 40.33 3.55
5802 6289 1.003718 CGCTTTTCCCCGACCTCTT 60.004 57.895 0.00 0.00 0.00 2.85
5803 6290 1.019805 CGCTTTTCCCCGACCTCTTC 61.020 60.000 0.00 0.00 0.00 2.87
5804 6291 0.036306 GCTTTTCCCCGACCTCTTCA 59.964 55.000 0.00 0.00 0.00 3.02
5833 6320 1.224069 CTTGTCAGCCTCCACACACG 61.224 60.000 0.00 0.00 0.00 4.49
5834 6321 3.044305 GTCAGCCTCCACACACGC 61.044 66.667 0.00 0.00 0.00 5.34
5835 6322 4.662961 TCAGCCTCCACACACGCG 62.663 66.667 3.53 3.53 0.00 6.01
5863 6352 4.135153 CACCAGCCCCGTCTCTCG 62.135 72.222 0.00 0.00 39.52 4.04
5866 6355 4.803426 CAGCCCCGTCTCTCGTGC 62.803 72.222 0.00 0.00 37.94 5.34
6072 6561 2.570582 CTTCCAGTGAGCCTCTCGCC 62.571 65.000 4.00 0.00 41.38 5.54
6118 6611 4.326507 AGCTGCTGGCGAGCTTGT 62.327 61.111 21.84 2.94 44.65 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.342308 TCAAAGAAACAGTCTGACAAAAGATAT 57.658 29.630 10.88 0.00 36.40 1.63
36 37 8.731275 TCAAAGAAACAGTCTGACAAAAGATA 57.269 30.769 10.88 0.00 36.40 1.98
37 38 7.630242 TCAAAGAAACAGTCTGACAAAAGAT 57.370 32.000 10.88 0.00 36.40 2.40
38 39 7.415541 CCATCAAAGAAACAGTCTGACAAAAGA 60.416 37.037 10.88 0.00 36.40 2.52
39 40 6.694411 CCATCAAAGAAACAGTCTGACAAAAG 59.306 38.462 10.88 0.00 36.40 2.27
40 41 6.563422 CCATCAAAGAAACAGTCTGACAAAA 58.437 36.000 10.88 0.00 36.40 2.44
41 42 5.450412 GCCATCAAAGAAACAGTCTGACAAA 60.450 40.000 10.88 0.00 36.40 2.83
42 43 4.036734 GCCATCAAAGAAACAGTCTGACAA 59.963 41.667 10.88 0.00 36.40 3.18
43 44 3.565482 GCCATCAAAGAAACAGTCTGACA 59.435 43.478 10.88 0.00 36.40 3.58
44 45 3.817647 AGCCATCAAAGAAACAGTCTGAC 59.182 43.478 6.91 0.00 36.40 3.51
45 46 3.817084 CAGCCATCAAAGAAACAGTCTGA 59.183 43.478 6.91 0.00 36.40 3.27
46 47 3.567164 ACAGCCATCAAAGAAACAGTCTG 59.433 43.478 0.00 0.00 36.40 3.51
47 48 3.567164 CACAGCCATCAAAGAAACAGTCT 59.433 43.478 0.00 0.00 38.69 3.24
48 49 3.316308 ACACAGCCATCAAAGAAACAGTC 59.684 43.478 0.00 0.00 0.00 3.51
49 50 3.067180 CACACAGCCATCAAAGAAACAGT 59.933 43.478 0.00 0.00 0.00 3.55
50 51 3.635331 CACACAGCCATCAAAGAAACAG 58.365 45.455 0.00 0.00 0.00 3.16
51 52 2.223782 GCACACAGCCATCAAAGAAACA 60.224 45.455 0.00 0.00 37.23 2.83
52 53 2.223782 TGCACACAGCCATCAAAGAAAC 60.224 45.455 0.00 0.00 44.83 2.78
53 54 2.030371 TGCACACAGCCATCAAAGAAA 58.970 42.857 0.00 0.00 44.83 2.52
54 55 1.689984 TGCACACAGCCATCAAAGAA 58.310 45.000 0.00 0.00 44.83 2.52
55 56 1.814394 GATGCACACAGCCATCAAAGA 59.186 47.619 0.00 0.00 44.83 2.52
56 57 1.816835 AGATGCACACAGCCATCAAAG 59.183 47.619 0.00 0.00 44.83 2.77
57 58 1.913778 AGATGCACACAGCCATCAAA 58.086 45.000 0.00 0.00 44.83 2.69
58 59 1.913778 AAGATGCACACAGCCATCAA 58.086 45.000 0.00 0.00 44.83 2.57
59 60 2.635714 CTAAGATGCACACAGCCATCA 58.364 47.619 0.00 0.00 44.83 3.07
60 61 1.332997 GCTAAGATGCACACAGCCATC 59.667 52.381 0.00 0.00 44.83 3.51
61 62 1.064906 AGCTAAGATGCACACAGCCAT 60.065 47.619 7.57 0.00 44.83 4.40
62 63 0.325933 AGCTAAGATGCACACAGCCA 59.674 50.000 7.57 0.00 44.83 4.75
63 64 2.315925 TAGCTAAGATGCACACAGCC 57.684 50.000 7.57 0.00 44.83 4.85
64 65 3.874400 CATAGCTAAGATGCACACAGC 57.126 47.619 0.00 0.00 45.96 4.40
72 73 2.697654 GGCCTCTGCATAGCTAAGATG 58.302 52.381 0.00 0.00 40.13 2.90
73 74 1.274728 CGGCCTCTGCATAGCTAAGAT 59.725 52.381 0.00 0.00 40.13 2.40
74 75 0.676184 CGGCCTCTGCATAGCTAAGA 59.324 55.000 0.00 0.00 40.13 2.10
75 76 0.320247 CCGGCCTCTGCATAGCTAAG 60.320 60.000 0.00 0.00 40.13 2.18
76 77 1.748403 CCGGCCTCTGCATAGCTAA 59.252 57.895 0.00 0.00 40.13 3.09
77 78 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
78 79 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
79 80 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
80 81 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
81 82 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
82 83 4.101448 GACACCCGGCCTCTGCAT 62.101 66.667 0.00 0.00 40.13 3.96
89 90 2.588856 ATAAAGAGCGACACCCGGCC 62.589 60.000 0.00 0.00 39.04 6.13
90 91 1.153429 ATAAAGAGCGACACCCGGC 60.153 57.895 0.00 0.00 39.04 6.13
91 92 1.429148 GCATAAAGAGCGACACCCGG 61.429 60.000 0.00 0.00 39.04 5.73
92 93 0.460284 AGCATAAAGAGCGACACCCG 60.460 55.000 0.00 0.00 42.21 5.28
93 94 1.739067 AAGCATAAAGAGCGACACCC 58.261 50.000 0.00 0.00 37.01 4.61
94 95 2.484264 ACAAAGCATAAAGAGCGACACC 59.516 45.455 0.00 0.00 37.01 4.16
95 96 3.813529 ACAAAGCATAAAGAGCGACAC 57.186 42.857 0.00 0.00 37.01 3.67
96 97 4.570772 GGATACAAAGCATAAAGAGCGACA 59.429 41.667 0.00 0.00 37.01 4.35
97 98 4.318121 CGGATACAAAGCATAAAGAGCGAC 60.318 45.833 0.00 0.00 37.01 5.19
98 99 3.802139 CGGATACAAAGCATAAAGAGCGA 59.198 43.478 0.00 0.00 37.01 4.93
99 100 3.555956 ACGGATACAAAGCATAAAGAGCG 59.444 43.478 0.00 0.00 37.01 5.03
100 101 5.485662 AACGGATACAAAGCATAAAGAGC 57.514 39.130 0.00 0.00 0.00 4.09
101 102 5.518847 TCGAACGGATACAAAGCATAAAGAG 59.481 40.000 0.00 0.00 0.00 2.85
102 103 5.412640 TCGAACGGATACAAAGCATAAAGA 58.587 37.500 0.00 0.00 0.00 2.52
103 104 5.712217 TCGAACGGATACAAAGCATAAAG 57.288 39.130 0.00 0.00 0.00 1.85
104 105 5.503357 GCATCGAACGGATACAAAGCATAAA 60.503 40.000 0.00 0.00 32.85 1.40
105 106 4.025229 GCATCGAACGGATACAAAGCATAA 60.025 41.667 0.00 0.00 32.85 1.90
106 107 3.493129 GCATCGAACGGATACAAAGCATA 59.507 43.478 0.00 0.00 32.85 3.14
107 108 2.287915 GCATCGAACGGATACAAAGCAT 59.712 45.455 0.00 0.00 32.85 3.79
108 109 1.663643 GCATCGAACGGATACAAAGCA 59.336 47.619 0.00 0.00 32.85 3.91
109 110 1.933853 AGCATCGAACGGATACAAAGC 59.066 47.619 0.00 0.00 32.85 3.51
110 111 4.109766 TGTAGCATCGAACGGATACAAAG 58.890 43.478 9.74 0.00 32.85 2.77
111 112 4.112716 TGTAGCATCGAACGGATACAAA 57.887 40.909 9.74 0.00 32.85 2.83
112 113 3.786516 TGTAGCATCGAACGGATACAA 57.213 42.857 9.74 0.00 32.85 2.41
113 114 4.316205 AATGTAGCATCGAACGGATACA 57.684 40.909 13.19 13.19 32.85 2.29
114 115 5.233476 TCAAAATGTAGCATCGAACGGATAC 59.767 40.000 0.00 0.00 32.85 2.24
115 116 5.353111 TCAAAATGTAGCATCGAACGGATA 58.647 37.500 0.00 0.00 32.85 2.59
116 117 4.188462 TCAAAATGTAGCATCGAACGGAT 58.812 39.130 0.00 0.00 35.09 4.18
117 118 3.591023 TCAAAATGTAGCATCGAACGGA 58.409 40.909 0.00 0.00 0.00 4.69
118 119 3.370978 ACTCAAAATGTAGCATCGAACGG 59.629 43.478 0.00 0.00 0.00 4.44
119 120 4.584029 ACTCAAAATGTAGCATCGAACG 57.416 40.909 0.00 0.00 0.00 3.95
120 121 9.982291 TTATTAACTCAAAATGTAGCATCGAAC 57.018 29.630 0.00 0.00 0.00 3.95
125 126 9.289303 CGCTTTTATTAACTCAAAATGTAGCAT 57.711 29.630 0.00 0.00 0.00 3.79
126 127 7.272515 GCGCTTTTATTAACTCAAAATGTAGCA 59.727 33.333 0.00 0.00 0.00 3.49
127 128 7.253651 GGCGCTTTTATTAACTCAAAATGTAGC 60.254 37.037 7.64 0.00 0.00 3.58
128 129 7.220108 GGGCGCTTTTATTAACTCAAAATGTAG 59.780 37.037 7.64 0.00 0.00 2.74
129 130 7.030768 GGGCGCTTTTATTAACTCAAAATGTA 58.969 34.615 7.64 0.00 0.00 2.29
130 131 5.867174 GGGCGCTTTTATTAACTCAAAATGT 59.133 36.000 7.64 0.00 0.00 2.71
131 132 6.099341 AGGGCGCTTTTATTAACTCAAAATG 58.901 36.000 7.64 0.00 0.00 2.32
132 133 6.280855 AGGGCGCTTTTATTAACTCAAAAT 57.719 33.333 7.64 0.00 0.00 1.82
133 134 5.715434 AGGGCGCTTTTATTAACTCAAAA 57.285 34.783 7.64 0.00 0.00 2.44
134 135 5.715434 AAGGGCGCTTTTATTAACTCAAA 57.285 34.783 10.73 0.00 0.00 2.69
135 136 5.715434 AAAGGGCGCTTTTATTAACTCAA 57.285 34.783 21.93 0.00 0.00 3.02
136 137 6.238266 CGATAAAGGGCGCTTTTATTAACTCA 60.238 38.462 30.56 12.27 32.42 3.41
137 138 6.134061 CGATAAAGGGCGCTTTTATTAACTC 58.866 40.000 30.56 15.50 32.42 3.01
138 139 5.008316 CCGATAAAGGGCGCTTTTATTAACT 59.992 40.000 30.56 9.43 32.42 2.24
139 140 5.007921 TCCGATAAAGGGCGCTTTTATTAAC 59.992 40.000 30.56 12.72 32.42 2.01
140 141 5.124645 TCCGATAAAGGGCGCTTTTATTAA 58.875 37.500 30.56 15.02 32.42 1.40
141 142 4.706035 TCCGATAAAGGGCGCTTTTATTA 58.294 39.130 30.56 15.38 32.42 0.98
142 143 3.547746 TCCGATAAAGGGCGCTTTTATT 58.452 40.909 30.56 17.35 32.42 1.40
143 144 3.202829 TCCGATAAAGGGCGCTTTTAT 57.797 42.857 30.56 20.97 34.36 1.40
144 145 2.695127 TCCGATAAAGGGCGCTTTTA 57.305 45.000 30.56 17.78 0.00 1.52
145 146 1.828979 TTCCGATAAAGGGCGCTTTT 58.171 45.000 30.56 19.07 0.00 2.27
146 147 1.828979 TTTCCGATAAAGGGCGCTTT 58.171 45.000 28.79 28.79 0.00 3.51
147 148 1.828979 TTTTCCGATAAAGGGCGCTT 58.171 45.000 10.73 10.73 0.00 4.68
148 149 1.676006 CATTTTCCGATAAAGGGCGCT 59.324 47.619 7.64 0.00 0.00 5.92
149 150 1.404035 ACATTTTCCGATAAAGGGCGC 59.596 47.619 0.00 0.00 0.00 6.53
150 151 2.422127 ACACATTTTCCGATAAAGGGCG 59.578 45.455 0.00 0.00 0.00 6.13
151 152 5.337554 GTTACACATTTTCCGATAAAGGGC 58.662 41.667 0.00 0.00 0.00 5.19
152 153 5.163591 GGGTTACACATTTTCCGATAAAGGG 60.164 44.000 0.00 0.00 0.00 3.95
153 154 5.650703 AGGGTTACACATTTTCCGATAAAGG 59.349 40.000 0.00 0.00 0.00 3.11
154 155 6.551736 CAGGGTTACACATTTTCCGATAAAG 58.448 40.000 0.00 0.00 0.00 1.85
155 156 5.106078 GCAGGGTTACACATTTTCCGATAAA 60.106 40.000 0.00 0.00 0.00 1.40
156 157 4.396790 GCAGGGTTACACATTTTCCGATAA 59.603 41.667 0.00 0.00 0.00 1.75
157 158 3.942748 GCAGGGTTACACATTTTCCGATA 59.057 43.478 0.00 0.00 0.00 2.92
158 159 2.752903 GCAGGGTTACACATTTTCCGAT 59.247 45.455 0.00 0.00 0.00 4.18
159 160 2.156098 GCAGGGTTACACATTTTCCGA 58.844 47.619 0.00 0.00 0.00 4.55
160 161 1.883275 TGCAGGGTTACACATTTTCCG 59.117 47.619 0.00 0.00 0.00 4.30
161 162 4.329462 TTTGCAGGGTTACACATTTTCC 57.671 40.909 0.00 0.00 0.00 3.13
184 185 7.995289 TGGATGACTTTATGCATACGATTTTT 58.005 30.769 5.74 0.00 0.00 1.94
185 186 7.566760 TGGATGACTTTATGCATACGATTTT 57.433 32.000 5.74 0.00 0.00 1.82
186 187 7.750229 ATGGATGACTTTATGCATACGATTT 57.250 32.000 5.74 0.00 37.35 2.17
187 188 8.846943 TTATGGATGACTTTATGCATACGATT 57.153 30.769 5.74 0.00 39.88 3.34
188 189 8.314021 TCTTATGGATGACTTTATGCATACGAT 58.686 33.333 5.74 0.00 39.88 3.73
189 190 7.666623 TCTTATGGATGACTTTATGCATACGA 58.333 34.615 5.74 0.00 39.88 3.43
190 191 7.889589 TCTTATGGATGACTTTATGCATACG 57.110 36.000 5.74 3.28 39.88 3.06
194 195 9.066892 GGTAAATCTTATGGATGACTTTATGCA 57.933 33.333 0.00 0.00 34.45 3.96
195 196 8.515414 GGGTAAATCTTATGGATGACTTTATGC 58.485 37.037 0.00 0.00 34.45 3.14
196 197 9.799106 AGGGTAAATCTTATGGATGACTTTATG 57.201 33.333 0.00 0.00 34.45 1.90
198 199 9.225682 AGAGGGTAAATCTTATGGATGACTTTA 57.774 33.333 0.00 0.00 34.45 1.85
199 200 8.107196 AGAGGGTAAATCTTATGGATGACTTT 57.893 34.615 0.00 0.00 34.45 2.66
200 201 7.698163 AGAGGGTAAATCTTATGGATGACTT 57.302 36.000 0.00 0.00 34.45 3.01
201 202 7.698163 AAGAGGGTAAATCTTATGGATGACT 57.302 36.000 0.00 0.00 35.26 3.41
202 203 7.599245 CGTAAGAGGGTAAATCTTATGGATGAC 59.401 40.741 6.93 0.00 40.41 3.06
203 204 7.667557 CGTAAGAGGGTAAATCTTATGGATGA 58.332 38.462 6.93 0.00 40.41 2.92
204 205 7.891183 CGTAAGAGGGTAAATCTTATGGATG 57.109 40.000 6.93 0.00 40.41 3.51
208 209 9.420551 GAATACCGTAAGAGGGTAAATCTTATG 57.579 37.037 2.43 7.61 41.35 1.90
209 210 9.151177 TGAATACCGTAAGAGGGTAAATCTTAT 57.849 33.333 2.43 0.00 41.35 1.73
210 211 8.537728 TGAATACCGTAAGAGGGTAAATCTTA 57.462 34.615 2.43 0.00 41.35 2.10
211 212 7.427989 TGAATACCGTAAGAGGGTAAATCTT 57.572 36.000 2.43 0.00 41.35 2.40
212 213 7.125356 ACTTGAATACCGTAAGAGGGTAAATCT 59.875 37.037 2.43 0.00 41.35 2.40
213 214 7.270779 ACTTGAATACCGTAAGAGGGTAAATC 58.729 38.462 2.43 5.30 41.35 2.17
214 215 7.191593 ACTTGAATACCGTAAGAGGGTAAAT 57.808 36.000 2.43 0.00 41.35 1.40
215 216 6.610075 ACTTGAATACCGTAAGAGGGTAAA 57.390 37.500 2.43 0.00 41.35 2.01
216 217 6.183360 GCTACTTGAATACCGTAAGAGGGTAA 60.183 42.308 2.43 0.00 41.35 2.85
217 218 5.300286 GCTACTTGAATACCGTAAGAGGGTA 59.700 44.000 0.85 0.85 42.11 3.69
218 219 4.099113 GCTACTTGAATACCGTAAGAGGGT 59.901 45.833 0.00 0.00 39.96 4.34
219 220 4.501058 GGCTACTTGAATACCGTAAGAGGG 60.501 50.000 0.00 0.00 43.02 4.30
220 221 4.098960 TGGCTACTTGAATACCGTAAGAGG 59.901 45.833 0.00 0.00 43.02 3.69
221 222 5.258456 TGGCTACTTGAATACCGTAAGAG 57.742 43.478 0.00 0.00 43.02 2.85
222 223 5.664294 TTGGCTACTTGAATACCGTAAGA 57.336 39.130 0.00 0.00 43.02 2.10
223 224 8.603242 AATATTGGCTACTTGAATACCGTAAG 57.397 34.615 0.00 0.00 0.00 2.34
224 225 8.967664 AAATATTGGCTACTTGAATACCGTAA 57.032 30.769 0.00 0.00 0.00 3.18
226 227 9.569122 AATAAATATTGGCTACTTGAATACCGT 57.431 29.630 0.00 0.00 0.00 4.83
232 233 9.249053 TGTGGAAATAAATATTGGCTACTTGAA 57.751 29.630 0.00 0.00 0.00 2.69
233 234 8.815565 TGTGGAAATAAATATTGGCTACTTGA 57.184 30.769 0.00 0.00 0.00 3.02
239 240 9.956640 TTTGAATTGTGGAAATAAATATTGGCT 57.043 25.926 0.00 0.00 0.00 4.75
270 271 9.535878 AAAAATCAAAACGGTTACACACATAAT 57.464 25.926 0.00 0.00 0.00 1.28
271 272 8.928270 AAAAATCAAAACGGTTACACACATAA 57.072 26.923 0.00 0.00 0.00 1.90
303 304 1.235724 AAAGTTGAAGTGCGTAGGGC 58.764 50.000 0.00 0.00 43.96 5.19
304 305 3.982576 AAAAAGTTGAAGTGCGTAGGG 57.017 42.857 0.00 0.00 0.00 3.53
305 306 4.851558 GCATAAAAAGTTGAAGTGCGTAGG 59.148 41.667 0.00 0.00 0.00 3.18
306 307 4.851558 GGCATAAAAAGTTGAAGTGCGTAG 59.148 41.667 0.00 0.00 32.23 3.51
307 308 4.517453 AGGCATAAAAAGTTGAAGTGCGTA 59.483 37.500 0.00 0.00 32.23 4.42
308 309 3.317993 AGGCATAAAAAGTTGAAGTGCGT 59.682 39.130 0.00 0.00 32.23 5.24
309 310 3.900941 AGGCATAAAAAGTTGAAGTGCG 58.099 40.909 0.00 0.00 32.23 5.34
310 311 5.177511 GGAAAGGCATAAAAAGTTGAAGTGC 59.822 40.000 0.00 0.00 0.00 4.40
311 312 5.402270 CGGAAAGGCATAAAAAGTTGAAGTG 59.598 40.000 0.00 0.00 0.00 3.16
312 313 5.068591 ACGGAAAGGCATAAAAAGTTGAAGT 59.931 36.000 0.00 0.00 0.00 3.01
313 314 5.528870 ACGGAAAGGCATAAAAAGTTGAAG 58.471 37.500 0.00 0.00 0.00 3.02
324 325 2.754946 AGTCGAAACGGAAAGGCATA 57.245 45.000 0.00 0.00 0.00 3.14
327 328 1.924629 GCAAAGTCGAAACGGAAAGGC 60.925 52.381 0.00 0.00 0.00 4.35
328 329 1.334689 GGCAAAGTCGAAACGGAAAGG 60.335 52.381 0.00 0.00 0.00 3.11
330 331 0.664224 GGGCAAAGTCGAAACGGAAA 59.336 50.000 0.00 0.00 0.00 3.13
334 335 1.574702 GGAGGGGCAAAGTCGAAACG 61.575 60.000 0.00 0.00 0.00 3.60
342 343 2.044946 CGGGAAGGAGGGGCAAAG 60.045 66.667 0.00 0.00 0.00 2.77
361 362 2.907696 TCAACTAGTGGATCGGGGAAAA 59.092 45.455 0.00 0.00 0.00 2.29
432 433 0.611618 TGCAATGGATTGGCCGAGTT 60.612 50.000 0.00 0.00 40.66 3.01
464 465 5.582269 GCATATATTGAGAGCCGAAGCATTA 59.418 40.000 0.00 0.00 43.56 1.90
526 529 3.497262 GCATAAGGACTAACCGGCATAAC 59.503 47.826 0.00 0.00 44.74 1.89
564 567 6.127054 TGACCATATCCGAGAAAACTCTCAAT 60.127 38.462 3.26 0.00 36.59 2.57
579 590 8.232913 TGGCTAAGTAAAATTTGACCATATCC 57.767 34.615 1.74 2.85 0.00 2.59
666 677 1.028905 TCCCTCGGTTGCAACTTTTG 58.971 50.000 27.64 15.53 0.00 2.44
741 760 0.033228 TTTTGCGAAATGGCCACTGG 59.967 50.000 8.16 0.00 0.00 4.00
762 781 1.866925 GACGGAGAAGGTTTTGGCG 59.133 57.895 0.00 0.00 0.00 5.69
830 855 3.414700 GAGCGTGACGGTGGCTTG 61.415 66.667 16.53 0.00 37.83 4.01
831 856 4.681978 GGAGCGTGACGGTGGCTT 62.682 66.667 16.53 0.00 37.83 4.35
906 942 1.497286 AGGGTTTGTTTGCTGGGTAGA 59.503 47.619 0.00 0.00 0.00 2.59
908 944 2.816337 GCTAGGGTTTGTTTGCTGGGTA 60.816 50.000 0.00 0.00 0.00 3.69
1161 1207 2.443390 ACCAGCGCCCGGTAGTAT 60.443 61.111 17.03 0.00 34.02 2.12
1251 1297 4.174129 CCGAAATCGTTGCCGGGC 62.174 66.667 13.32 13.32 38.42 6.13
1313 1361 0.539986 TGAGGAATGCGGTAAGACCC 59.460 55.000 0.00 0.00 33.75 4.46
1320 1368 2.045926 GGTGCTGAGGAATGCGGT 60.046 61.111 0.00 0.00 0.00 5.68
1322 1370 0.883833 AAAAGGTGCTGAGGAATGCG 59.116 50.000 0.00 0.00 0.00 4.73
1349 1397 4.932200 AGCTTCTGCATTAACAGTACACTC 59.068 41.667 0.00 0.00 42.74 3.51
1381 1429 7.798596 AACTAATTGAGTCCAATAGAGCATG 57.201 36.000 0.00 0.00 41.84 4.06
1392 1440 8.645487 CGTGTACTCTAAAAACTAATTGAGTCC 58.355 37.037 0.00 0.00 37.44 3.85
1409 1457 8.578151 ACTTCTCTTTTTCTAATCGTGTACTCT 58.422 33.333 0.00 0.00 0.00 3.24
1410 1458 8.745464 ACTTCTCTTTTTCTAATCGTGTACTC 57.255 34.615 0.00 0.00 0.00 2.59
1411 1459 8.979574 CAACTTCTCTTTTTCTAATCGTGTACT 58.020 33.333 0.00 0.00 0.00 2.73
1412 1460 7.740781 GCAACTTCTCTTTTTCTAATCGTGTAC 59.259 37.037 0.00 0.00 0.00 2.90
1413 1461 7.656137 AGCAACTTCTCTTTTTCTAATCGTGTA 59.344 33.333 0.00 0.00 0.00 2.90
1414 1462 6.483640 AGCAACTTCTCTTTTTCTAATCGTGT 59.516 34.615 0.00 0.00 0.00 4.49
1415 1463 6.892691 AGCAACTTCTCTTTTTCTAATCGTG 58.107 36.000 0.00 0.00 0.00 4.35
1416 1464 7.497925 AAGCAACTTCTCTTTTTCTAATCGT 57.502 32.000 0.00 0.00 0.00 3.73
1417 1465 7.149063 GCAAAGCAACTTCTCTTTTTCTAATCG 60.149 37.037 0.00 0.00 30.79 3.34
1450 1516 5.376625 AGATTCACAATGTAACACACACCT 58.623 37.500 0.00 0.00 40.86 4.00
1452 1518 6.649141 TCCTAGATTCACAATGTAACACACAC 59.351 38.462 0.00 0.00 40.86 3.82
1453 1519 6.764379 TCCTAGATTCACAATGTAACACACA 58.236 36.000 0.00 0.00 42.69 3.72
1461 1527 3.202818 TGCCCATCCTAGATTCACAATGT 59.797 43.478 0.00 0.00 0.00 2.71
1475 1554 3.197664 AGCTAAGCTTTGCCCATCC 57.802 52.632 25.93 1.49 33.89 3.51
1526 1606 2.354510 CCCATGTGTAATACAACCTGCG 59.645 50.000 0.00 0.00 43.77 5.18
1643 1723 1.003839 TTTCACGGTAGCCAGCCAG 60.004 57.895 0.00 0.00 0.00 4.85
1742 1822 0.105593 CTACCGCATGCATCTGGTCT 59.894 55.000 19.91 3.02 35.93 3.85
1815 1896 7.526142 AATTTTACTTTGGGAGAAAGGAGTC 57.474 36.000 0.00 0.00 0.00 3.36
1885 1966 1.225637 CGAAACGTACATGCCGTGC 60.226 57.895 11.25 6.66 38.77 5.34
1951 2033 9.857656 AACTAACATGGATCATCTATGTGAATT 57.142 29.630 16.76 3.47 45.90 2.17
2066 2223 8.311395 TCACCAGAGATCACTAAATATGTCTT 57.689 34.615 0.00 0.00 0.00 3.01
2162 2319 3.005791 ACTGCTTCCCAATTTGTACAAGC 59.994 43.478 8.56 6.68 37.38 4.01
2202 2359 1.133790 GAGCACCTGCCAATCAATCAC 59.866 52.381 0.00 0.00 43.38 3.06
2526 2683 6.889198 TCTGCCAAGTAATAGAATACAAGCT 58.111 36.000 0.00 0.00 0.00 3.74
2537 2694 7.557358 ACATCAATTGTGATCTGCCAAGTAATA 59.443 33.333 5.13 0.00 42.88 0.98
2562 2725 1.298788 CCACACGCGGGAAAAACAC 60.299 57.895 19.19 0.00 0.00 3.32
2589 2752 3.563808 ACAGCAGAAAACACGCAGAAATA 59.436 39.130 0.00 0.00 0.00 1.40
2598 2761 3.568007 TGAATACCCACAGCAGAAAACAC 59.432 43.478 0.00 0.00 0.00 3.32
2632 2980 5.784906 TGAATATATGATGCAGGTCCAGGTA 59.215 40.000 0.00 0.00 0.00 3.08
2714 3112 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2715 3113 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2716 3114 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2717 3115 2.000447 CTAAGCTTTTTCGGACGGAGG 59.000 52.381 3.20 0.00 0.00 4.30
2718 3116 2.412089 CACTAAGCTTTTTCGGACGGAG 59.588 50.000 3.20 0.00 0.00 4.63
2719 3117 2.409975 CACTAAGCTTTTTCGGACGGA 58.590 47.619 3.20 0.00 0.00 4.69
2720 3118 1.136057 GCACTAAGCTTTTTCGGACGG 60.136 52.381 3.20 0.00 41.15 4.79
2721 3119 2.227754 GCACTAAGCTTTTTCGGACG 57.772 50.000 3.20 0.00 41.15 4.79
2732 3130 6.931281 TCAAATGGATGTATCTAGCACTAAGC 59.069 38.462 0.00 0.00 46.19 3.09
2733 3131 7.601886 CCTCAAATGGATGTATCTAGCACTAAG 59.398 40.741 0.00 0.00 0.00 2.18
2734 3132 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
2735 3133 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
2736 3134 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
2737 3135 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2738 3136 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2739 3137 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2740 3138 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2741 3139 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
2742 3140 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
2743 3141 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
2744 3142 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
2745 3143 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
2746 3144 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
2747 3145 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
2748 3146 3.094572 CAAGCTTGTCCCTCAAATGGAT 58.905 45.455 18.65 0.00 35.48 3.41
2749 3147 2.517959 CAAGCTTGTCCCTCAAATGGA 58.482 47.619 18.65 0.00 35.48 3.41
2750 3148 1.547372 CCAAGCTTGTCCCTCAAATGG 59.453 52.381 24.35 1.81 35.48 3.16
2751 3149 1.547372 CCCAAGCTTGTCCCTCAAATG 59.453 52.381 24.35 5.47 35.48 2.32
2752 3150 1.428912 TCCCAAGCTTGTCCCTCAAAT 59.571 47.619 24.35 0.00 35.48 2.32
2753 3151 0.850100 TCCCAAGCTTGTCCCTCAAA 59.150 50.000 24.35 0.00 35.48 2.69
2754 3152 0.110486 GTCCCAAGCTTGTCCCTCAA 59.890 55.000 24.35 0.00 34.61 3.02
2755 3153 1.059584 TGTCCCAAGCTTGTCCCTCA 61.060 55.000 24.35 12.85 0.00 3.86
2756 3154 0.110486 TTGTCCCAAGCTTGTCCCTC 59.890 55.000 24.35 10.65 0.00 4.30
2757 3155 0.111253 CTTGTCCCAAGCTTGTCCCT 59.889 55.000 24.35 0.00 0.00 4.20
2758 3156 1.527433 GCTTGTCCCAAGCTTGTCCC 61.527 60.000 24.35 11.81 40.01 4.46
2759 3157 1.959848 GCTTGTCCCAAGCTTGTCC 59.040 57.895 24.35 12.15 40.01 4.02
2765 3163 1.602920 CCGAAAAAGCTTGTCCCAAGC 60.603 52.381 18.69 18.69 43.31 4.01
2766 3164 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
2767 3165 1.679153 GTCCGAAAAAGCTTGTCCCAA 59.321 47.619 0.00 0.00 0.00 4.12
2768 3166 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
2769 3167 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
2770 3168 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2771 3169 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
2772 3170 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
2773 3171 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
2774 3172 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2775 3173 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2776 3174 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2777 3175 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2778 3176 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
2779 3177 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2780 3178 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
2781 3179 2.374504 AGATATACTCCCTCCGTCCGAA 59.625 50.000 0.00 0.00 0.00 4.30
2782 3180 1.983691 AGATATACTCCCTCCGTCCGA 59.016 52.381 0.00 0.00 0.00 4.55
2783 3181 2.493414 AGATATACTCCCTCCGTCCG 57.507 55.000 0.00 0.00 0.00 4.79
2784 3182 4.344390 ACAAAAGATATACTCCCTCCGTCC 59.656 45.833 0.00 0.00 0.00 4.79
2785 3183 5.163437 ACACAAAAGATATACTCCCTCCGTC 60.163 44.000 0.00 0.00 0.00 4.79
2786 3184 4.715297 ACACAAAAGATATACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
2787 3185 5.277857 ACACAAAAGATATACTCCCTCCG 57.722 43.478 0.00 0.00 0.00 4.63
2788 3186 8.211629 ACATAACACAAAAGATATACTCCCTCC 58.788 37.037 0.00 0.00 0.00 4.30
2789 3187 9.614792 AACATAACACAAAAGATATACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
2790 3188 9.396022 CAACATAACACAAAAGATATACTCCCT 57.604 33.333 0.00 0.00 0.00 4.20
2791 3189 9.391006 TCAACATAACACAAAAGATATACTCCC 57.609 33.333 0.00 0.00 0.00 4.30
2798 3196 9.739276 AGAAGGATCAACATAACACAAAAGATA 57.261 29.630 0.00 0.00 0.00 1.98
2799 3197 8.641498 AGAAGGATCAACATAACACAAAAGAT 57.359 30.769 0.00 0.00 0.00 2.40
2800 3198 9.739276 ATAGAAGGATCAACATAACACAAAAGA 57.261 29.630 0.00 0.00 0.00 2.52
2827 3225 4.878971 TCATCCGTTTTGTTTCAAGAGTGA 59.121 37.500 0.00 0.00 0.00 3.41
2876 3286 5.769662 ACTGGAAAACTACAGCAATCATGAA 59.230 36.000 0.00 0.00 38.25 2.57
2925 3335 6.879458 ACTTTGCTTCCTACCACAACTATAAG 59.121 38.462 0.00 0.00 0.00 1.73
3235 3646 2.369394 GCATAAGTTTGACTGGGAGGG 58.631 52.381 0.00 0.00 0.00 4.30
3256 3667 7.305935 CCAACACAAGATTTGTCAACATTAACG 60.306 37.037 0.00 0.00 43.23 3.18
3387 3798 6.778069 TGAGAGATCTGTAAAGGGGTATGTAG 59.222 42.308 0.00 0.00 0.00 2.74
3435 3846 9.368674 TGTCAAACTGCAAATTTATAATGGATG 57.631 29.630 0.00 0.00 0.00 3.51
3462 3873 7.251281 GGTTATTCTTGAGGCATTAACTTGTC 58.749 38.462 0.00 0.00 0.00 3.18
3511 3922 4.322499 GGAAGTTACCTAGCACTGTAGCAA 60.322 45.833 5.32 0.00 36.85 3.91
3612 4023 3.371380 GGCATCTCCAGAGGACTGAAATT 60.371 47.826 0.00 0.00 46.03 1.82
3663 4074 2.497107 TGAAAGCTCTTGTTTGCAGC 57.503 45.000 0.00 0.00 0.00 5.25
3683 4094 5.517770 GCGTACAATTGTAGGATTAACGACT 59.482 40.000 32.10 2.13 38.32 4.18
3740 4151 7.847078 CACACAACATAACTTGCAATTTTTCTG 59.153 33.333 7.39 6.21 0.00 3.02
3774 4185 6.321435 GCCTTACCTCCTTATAAACAATGCTT 59.679 38.462 0.00 0.00 0.00 3.91
3827 4251 0.459585 CCGCTTTAGACGCTTAGGCA 60.460 55.000 0.00 0.00 38.60 4.75
3837 4261 3.552132 TGACATTATGCCCGCTTTAGA 57.448 42.857 0.00 0.00 0.00 2.10
3891 4315 3.181329 TCATAAGGAGTCCTGCCTTTGA 58.819 45.455 13.89 8.84 42.99 2.69
3899 4323 5.952347 GGGAACATTTTTCATAAGGAGTCCT 59.048 40.000 5.62 5.62 33.87 3.85
3967 4391 7.604545 GGAGCTAGCTCTTTAAGAAAGAAGAAA 59.395 37.037 36.76 0.00 46.13 2.52
3968 4392 7.100409 GGAGCTAGCTCTTTAAGAAAGAAGAA 58.900 38.462 36.76 0.00 46.13 2.52
4028 4452 3.094572 ACTGGAAGGAGCATTTGAATGG 58.905 45.455 5.91 0.00 39.30 3.16
4090 4515 0.523072 CAGTTGAGCCATTTCACCCG 59.477 55.000 0.00 0.00 0.00 5.28
4095 4520 2.704725 TTTCGCAGTTGAGCCATTTC 57.295 45.000 0.00 0.00 0.00 2.17
4139 4565 2.403252 AGCAAGCGCCAAACTATAGT 57.597 45.000 2.29 0.00 39.83 2.12
4185 4611 4.022935 ACACATGCAAACTCCACATTACAG 60.023 41.667 0.00 0.00 0.00 2.74
4316 4743 5.124457 GGCTCAGCTGTCAAAAGATAAATGA 59.876 40.000 14.67 0.00 0.00 2.57
4370 4797 5.337219 TGTTACAACAAATCACGCAGTAG 57.663 39.130 0.00 0.00 34.98 2.57
4377 4804 8.732746 AGGGAGTATATGTTACAACAAATCAC 57.267 34.615 0.00 0.00 43.03 3.06
4417 4844 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
4418 4845 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
4438 4865 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4439 4866 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
4440 4867 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
4442 4869 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
4443 4870 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
4445 4872 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4499 4926 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
4536 4963 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4537 4964 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
4626 5063 8.589629 GCAAAACAGCTACAATTCTATTTCATG 58.410 33.333 0.00 0.00 0.00 3.07
4638 5077 0.310543 CAGCCGCAAAACAGCTACAA 59.689 50.000 0.00 0.00 34.38 2.41
4657 5096 3.285484 AGCAAATGAGATGATGTCACCC 58.715 45.455 0.00 0.00 0.00 4.61
4663 5102 7.308649 CCCTGAAGATTAGCAAATGAGATGATG 60.309 40.741 0.00 0.00 0.00 3.07
4682 5126 1.590932 CCAGCAATCGATCCCTGAAG 58.409 55.000 20.64 6.87 0.00 3.02
4733 5177 3.568007 TCACGCCCAATAATTCCAATAGC 59.432 43.478 0.00 0.00 0.00 2.97
4750 5194 1.398390 CCTGGATTAAAGCACTCACGC 59.602 52.381 0.00 0.00 0.00 5.34
4768 5212 9.479549 AATATAAAATTTGAGACATGTGACCCT 57.520 29.630 1.15 0.00 0.00 4.34
4821 5269 0.036010 AAGTTCTCTGCATCCACGGG 60.036 55.000 0.00 0.00 0.00 5.28
4871 5319 0.034670 AGCCCAGCTTCATGTTCTCC 60.035 55.000 0.00 0.00 33.89 3.71
4924 5372 8.357402 GGAAGGTACTAATTGTGATTTGTTGTT 58.643 33.333 0.00 0.00 38.49 2.83
4926 5374 7.881142 TGGAAGGTACTAATTGTGATTTGTTG 58.119 34.615 0.00 0.00 38.49 3.33
4929 5377 7.390440 TGACTGGAAGGTACTAATTGTGATTTG 59.610 37.037 0.00 0.00 38.49 2.32
4930 5378 7.390718 GTGACTGGAAGGTACTAATTGTGATTT 59.609 37.037 0.00 0.00 38.49 2.17
4933 5381 5.542635 AGTGACTGGAAGGTACTAATTGTGA 59.457 40.000 0.00 0.00 38.49 3.58
4938 5386 4.684724 TGGAGTGACTGGAAGGTACTAAT 58.315 43.478 0.00 0.00 38.49 1.73
4941 5389 5.001725 TTCATGGAGTGACTGGAAGGTACT 61.002 45.833 0.00 0.00 39.30 2.73
4942 5390 2.832129 TCATGGAGTGACTGGAAGGTAC 59.168 50.000 0.00 0.00 39.30 3.34
4948 5396 4.371624 AATGTTTCATGGAGTGACTGGA 57.628 40.909 0.00 0.00 36.32 3.86
4952 5400 4.154195 AGCGTTAATGTTTCATGGAGTGAC 59.846 41.667 0.00 0.00 36.32 3.67
4956 5404 4.944962 TGAGCGTTAATGTTTCATGGAG 57.055 40.909 0.00 0.00 0.00 3.86
4980 5428 1.111116 CATGGCCTGCATACAAGGGG 61.111 60.000 3.32 0.00 0.00 4.79
4989 5437 0.328926 TGTCAAGATCATGGCCTGCA 59.671 50.000 3.32 0.00 0.00 4.41
5031 5479 4.662961 CTGTGGTGCTGCGACGGA 62.663 66.667 0.00 0.00 34.59 4.69
5163 5611 2.558313 GAGCAACAGTTGGCGAGC 59.442 61.111 15.28 0.00 34.54 5.03
5251 5699 1.717032 TGCGATATACAGGGGCTCTT 58.283 50.000 0.00 0.00 0.00 2.85
5253 5701 3.195825 ACTTATGCGATATACAGGGGCTC 59.804 47.826 0.00 0.00 0.00 4.70
5281 5729 1.160137 GCTTCCGAAACAGCTGACAT 58.840 50.000 23.35 5.45 32.87 3.06
5329 5777 2.872388 CGCTGGTGGAGTGGAGTGT 61.872 63.158 0.00 0.00 0.00 3.55
5330 5778 2.047844 CGCTGGTGGAGTGGAGTG 60.048 66.667 0.00 0.00 0.00 3.51
5363 5811 9.856939 TTCTTCTAAGATTGGTGACGAGCAGTC 62.857 44.444 5.52 5.52 41.48 3.51
5365 5813 3.510388 TCTAAGATTGGTGACGAGCAG 57.490 47.619 0.00 0.00 30.42 4.24
5366 5814 3.509967 TCTTCTAAGATTGGTGACGAGCA 59.490 43.478 0.00 0.00 30.42 4.26
5479 5936 3.798548 GCTCTTCTTCTTATCCTCGCCTG 60.799 52.174 0.00 0.00 0.00 4.85
5483 5942 3.181495 ACACGCTCTTCTTCTTATCCTCG 60.181 47.826 0.00 0.00 0.00 4.63
5485 5944 4.810191 AACACGCTCTTCTTCTTATCCT 57.190 40.909 0.00 0.00 0.00 3.24
5486 5945 4.691216 ACAAACACGCTCTTCTTCTTATCC 59.309 41.667 0.00 0.00 0.00 2.59
5487 5946 5.612865 CACAAACACGCTCTTCTTCTTATC 58.387 41.667 0.00 0.00 0.00 1.75
5489 5948 3.247648 GCACAAACACGCTCTTCTTCTTA 59.752 43.478 0.00 0.00 0.00 2.10
5490 5949 2.032178 GCACAAACACGCTCTTCTTCTT 59.968 45.455 0.00 0.00 0.00 2.52
5494 5957 0.940126 CTGCACAAACACGCTCTTCT 59.060 50.000 0.00 0.00 0.00 2.85
5506 5969 0.246360 ATCGACGGATGACTGCACAA 59.754 50.000 0.00 0.00 0.00 3.33
5507 5970 1.890174 ATCGACGGATGACTGCACA 59.110 52.632 0.00 0.00 0.00 4.57
5555 6022 1.680314 GCAGCTTGGGAAGAAGGGG 60.680 63.158 0.00 0.00 0.00 4.79
5561 6028 0.108804 CAATGCTGCAGCTTGGGAAG 60.109 55.000 36.61 16.80 42.66 3.46
5577 6044 0.179156 CGCAAGAAATCGCCTGCAAT 60.179 50.000 0.00 0.00 43.02 3.56
5654 6130 2.031919 TGTGTTGCAGTAGGCCGG 59.968 61.111 0.00 0.00 43.89 6.13
5707 6185 1.232621 ATGTGACTGACGACGACGGA 61.233 55.000 13.01 0.00 44.46 4.69
5785 6267 0.036306 TGAAGAGGTCGGGGAAAAGC 59.964 55.000 0.00 0.00 0.00 3.51
5802 6289 1.403382 GCTGACAAGAGAGCACGATGA 60.403 52.381 0.00 0.00 35.15 2.92
5803 6290 0.997932 GCTGACAAGAGAGCACGATG 59.002 55.000 0.00 0.00 35.15 3.84
5804 6291 0.108424 GGCTGACAAGAGAGCACGAT 60.108 55.000 0.00 0.00 36.90 3.73
6106 6599 2.032528 TCCCAACAAGCTCGCCAG 59.967 61.111 0.00 0.00 0.00 4.85
6115 6608 3.494254 ACCCACCGCTCCCAACAA 61.494 61.111 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.