Multiple sequence alignment - TraesCS6D01G282200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G282200 chr6D 100.000 3539 0 0 1 3539 389654078 389650540 0.000000e+00 6536.0
1 TraesCS6D01G282200 chr6D 75.909 1677 234 83 723 2320 385222515 385224100 0.000000e+00 702.0
2 TraesCS6D01G282200 chr6D 75.772 842 116 44 1707 2505 385166020 385166816 9.410000e-91 344.0
3 TraesCS6D01G282200 chr6B 89.510 2879 136 64 722 3539 583336355 583333582 0.000000e+00 3491.0
4 TraesCS6D01G282200 chr6B 75.829 844 121 41 1706 2505 575315420 575316224 5.620000e-93 351.0
5 TraesCS6D01G282200 chr6B 83.243 185 18 7 345 529 583336522 583336351 1.320000e-34 158.0
6 TraesCS6D01G282200 chr6B 93.000 100 7 0 39 138 583337203 583337104 2.850000e-31 147.0
7 TraesCS6D01G282200 chr6A 89.345 2215 112 40 722 2876 536024960 536022810 0.000000e+00 2669.0
8 TraesCS6D01G282200 chr6A 91.497 541 26 4 722 1242 536031682 536031142 0.000000e+00 726.0
9 TraesCS6D01G282200 chr6A 75.708 848 127 40 1707 2513 529287941 529288750 5.620000e-93 351.0
10 TraesCS6D01G282200 chr6A 86.196 326 25 6 135 458 536025297 536024990 5.660000e-88 335.0
11 TraesCS6D01G282200 chr6A 86.196 326 25 6 135 458 536032019 536031712 5.660000e-88 335.0
12 TraesCS6D01G282200 chr6A 78.125 608 73 28 2969 3539 536022808 536022224 7.320000e-87 331.0
13 TraesCS6D01G282200 chr6A 78.667 450 55 22 1905 2320 529560331 529560773 9.740000e-66 261.0
14 TraesCS6D01G282200 chr6A 86.957 138 6 2 1 138 536025743 536025618 1.020000e-30 145.0
15 TraesCS6D01G282200 chr6A 86.957 138 7 1 1 138 536032466 536032340 1.020000e-30 145.0
16 TraesCS6D01G282200 chr6A 100.000 36 0 0 494 529 536024991 536024956 2.280000e-07 67.6
17 TraesCS6D01G282200 chr6A 100.000 36 0 0 494 529 536031713 536031678 2.280000e-07 67.6
18 TraesCS6D01G282200 chr1D 97.959 196 4 0 529 724 145585616 145585811 1.220000e-89 340.0
19 TraesCS6D01G282200 chr3D 95.522 201 9 0 527 727 17358843 17359043 4.410000e-84 322.0
20 TraesCS6D01G282200 chr3D 95.025 201 10 0 526 726 1876474 1876274 2.050000e-82 316.0
21 TraesCS6D01G282200 chr3D 94.203 207 11 1 522 727 378782474 378782680 7.370000e-82 315.0
22 TraesCS6D01G282200 chr2D 95.000 200 10 0 527 726 458171875 458172074 7.370000e-82 315.0
23 TraesCS6D01G282200 chr2D 93.627 204 12 1 526 728 30609700 30609497 1.600000e-78 303.0
24 TraesCS6D01G282200 chr3A 94.527 201 10 1 527 726 690792772 690792972 3.430000e-80 309.0
25 TraesCS6D01G282200 chr1A 94.527 201 10 1 527 726 586372725 586372925 3.430000e-80 309.0
26 TraesCS6D01G282200 chr2A 94.059 202 10 2 526 726 16731948 16732148 4.440000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G282200 chr6D 389650540 389654078 3538 True 6536.000000 6536 100.000000 1 3539 1 chr6D.!!$R1 3538
1 TraesCS6D01G282200 chr6D 385222515 385224100 1585 False 702.000000 702 75.909000 723 2320 1 chr6D.!!$F2 1597
2 TraesCS6D01G282200 chr6D 385166020 385166816 796 False 344.000000 344 75.772000 1707 2505 1 chr6D.!!$F1 798
3 TraesCS6D01G282200 chr6B 583333582 583337203 3621 True 1265.333333 3491 88.584333 39 3539 3 chr6B.!!$R1 3500
4 TraesCS6D01G282200 chr6B 575315420 575316224 804 False 351.000000 351 75.829000 1706 2505 1 chr6B.!!$F1 799
5 TraesCS6D01G282200 chr6A 536022224 536025743 3519 True 709.520000 2669 88.124600 1 3539 5 chr6A.!!$R1 3538
6 TraesCS6D01G282200 chr6A 529287941 529288750 809 False 351.000000 351 75.708000 1707 2513 1 chr6A.!!$F1 806
7 TraesCS6D01G282200 chr6A 536031142 536032466 1324 True 318.400000 726 91.162500 1 1242 4 chr6A.!!$R2 1241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 943 0.176910 GAGGTGCTTAGGAGAGGTGC 59.823 60.0 0.0 0.0 0.00 5.01 F
564 944 0.252467 AGGTGCTTAGGAGAGGTGCT 60.252 55.0 0.0 0.0 0.00 4.40 F
565 945 0.615850 GGTGCTTAGGAGAGGTGCTT 59.384 55.0 0.0 0.0 0.00 3.91 F
2237 2776 0.038618 TCATCGACCACACGGACTTG 60.039 55.0 0.0 0.0 35.59 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 2030 0.535102 AAACCAGCAGAACCACGAGG 60.535 55.000 0.00 0.0 42.21 4.63 R
1901 2392 0.599558 TACACACACCGAGTACTGGC 59.400 55.000 0.00 0.0 0.00 4.85 R
2312 2851 1.267682 CCATCATGTCACAATGTCGCG 60.268 52.381 0.00 0.0 0.00 5.87 R
3407 3996 0.318614 AAATGGCCGTTTGTTCTGCG 60.319 50.000 22.26 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.370978 CAGCCCAACTAATGACAGTAACG 59.629 47.826 0.00 0.00 0.00 3.18
67 68 5.703978 TGATAATGTGAACTTGTGTTGGG 57.296 39.130 0.00 0.00 36.39 4.12
73 74 3.829601 TGTGAACTTGTGTTGGGTTCTTT 59.170 39.130 0.00 0.00 39.73 2.52
93 94 5.669904 TCTTTTGATATGTCATAGTGGGGGA 59.330 40.000 0.00 0.00 33.56 4.81
100 101 2.248950 TGTCATAGTGGGGGATAGGTGA 59.751 50.000 0.00 0.00 0.00 4.02
191 522 4.456911 CCCACATAGCTCGCATCATAAATT 59.543 41.667 0.00 0.00 0.00 1.82
223 554 0.940126 CTCTCGTGCCACCAATATGC 59.060 55.000 0.00 0.00 0.00 3.14
235 566 8.400947 GTGCCACCAATATGCATATTAGATTAG 58.599 37.037 27.29 15.78 37.34 1.73
295 627 7.877612 AGCAACACGGATCATAATAATGTGATA 59.122 33.333 0.00 0.00 37.50 2.15
377 757 8.141268 ACGCCAAATATAATAGGATGGTTTTTG 58.859 33.333 0.00 0.00 0.00 2.44
388 768 4.760204 AGGATGGTTTTTGCTGTGTAGTAC 59.240 41.667 0.00 0.00 0.00 2.73
389 769 4.760204 GGATGGTTTTTGCTGTGTAGTACT 59.240 41.667 0.00 0.00 0.00 2.73
390 770 5.935789 GGATGGTTTTTGCTGTGTAGTACTA 59.064 40.000 0.00 0.00 0.00 1.82
391 771 6.092259 GGATGGTTTTTGCTGTGTAGTACTAG 59.908 42.308 1.87 0.00 0.00 2.57
392 772 4.753107 TGGTTTTTGCTGTGTAGTACTAGC 59.247 41.667 17.74 17.74 35.42 3.42
393 773 4.153655 GGTTTTTGCTGTGTAGTACTAGCC 59.846 45.833 20.18 2.97 34.56 3.93
394 774 4.610605 TTTTGCTGTGTAGTACTAGCCA 57.389 40.909 20.18 11.52 34.56 4.75
453 833 1.133668 ACATAGAGCAGCCATTTCCCC 60.134 52.381 0.00 0.00 0.00 4.81
456 836 1.298953 AGAGCAGCCATTTCCCCTTA 58.701 50.000 0.00 0.00 0.00 2.69
457 837 1.064389 AGAGCAGCCATTTCCCCTTAC 60.064 52.381 0.00 0.00 0.00 2.34
459 839 0.393808 GCAGCCATTTCCCCTTACGA 60.394 55.000 0.00 0.00 0.00 3.43
461 841 2.442413 CAGCCATTTCCCCTTACGAAA 58.558 47.619 0.00 0.00 33.94 3.46
462 842 3.023832 CAGCCATTTCCCCTTACGAAAT 58.976 45.455 0.00 0.00 39.87 2.17
463 843 4.204012 CAGCCATTTCCCCTTACGAAATA 58.796 43.478 0.00 0.00 37.75 1.40
464 844 4.036380 CAGCCATTTCCCCTTACGAAATAC 59.964 45.833 0.00 0.00 37.75 1.89
465 845 4.079958 AGCCATTTCCCCTTACGAAATACT 60.080 41.667 0.00 0.00 37.75 2.12
466 846 4.036380 GCCATTTCCCCTTACGAAATACTG 59.964 45.833 0.00 0.00 37.75 2.74
478 858 7.009357 CCTTACGAAATACTGTAACAGAGAAGC 59.991 40.741 0.00 0.00 35.18 3.86
538 918 3.272574 GGTAACCCTAAGGCCTTGTAC 57.727 52.381 28.77 18.90 36.11 2.90
539 919 2.573009 GGTAACCCTAAGGCCTTGTACA 59.427 50.000 28.77 6.91 36.11 2.90
540 920 3.009363 GGTAACCCTAAGGCCTTGTACAA 59.991 47.826 28.77 8.28 36.11 2.41
541 921 4.324797 GGTAACCCTAAGGCCTTGTACAAT 60.325 45.833 28.77 11.90 36.11 2.71
542 922 3.366052 ACCCTAAGGCCTTGTACAATG 57.634 47.619 28.77 7.68 36.11 2.82
543 923 2.025321 ACCCTAAGGCCTTGTACAATGG 60.025 50.000 28.77 15.68 36.11 3.16
544 924 2.654863 CCTAAGGCCTTGTACAATGGG 58.345 52.381 28.77 7.36 0.00 4.00
545 925 2.241176 CCTAAGGCCTTGTACAATGGGA 59.759 50.000 28.77 2.40 0.00 4.37
546 926 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
547 927 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
548 928 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
549 929 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
550 930 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
551 931 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
552 932 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
553 933 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
554 934 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
555 935 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
556 936 1.668826 ACAATGGGAGGTGCTTAGGA 58.331 50.000 0.00 0.00 0.00 2.94
557 937 1.561542 ACAATGGGAGGTGCTTAGGAG 59.438 52.381 0.00 0.00 0.00 3.69
558 938 1.839994 CAATGGGAGGTGCTTAGGAGA 59.160 52.381 0.00 0.00 0.00 3.71
559 939 1.799933 ATGGGAGGTGCTTAGGAGAG 58.200 55.000 0.00 0.00 0.00 3.20
560 940 0.325671 TGGGAGGTGCTTAGGAGAGG 60.326 60.000 0.00 0.00 0.00 3.69
561 941 0.325765 GGGAGGTGCTTAGGAGAGGT 60.326 60.000 0.00 0.00 0.00 3.85
562 942 0.827368 GGAGGTGCTTAGGAGAGGTG 59.173 60.000 0.00 0.00 0.00 4.00
563 943 0.176910 GAGGTGCTTAGGAGAGGTGC 59.823 60.000 0.00 0.00 0.00 5.01
564 944 0.252467 AGGTGCTTAGGAGAGGTGCT 60.252 55.000 0.00 0.00 0.00 4.40
565 945 0.615850 GGTGCTTAGGAGAGGTGCTT 59.384 55.000 0.00 0.00 0.00 3.91
566 946 1.831736 GGTGCTTAGGAGAGGTGCTTA 59.168 52.381 0.00 0.00 0.00 3.09
567 947 2.159028 GGTGCTTAGGAGAGGTGCTTAG 60.159 54.545 0.00 0.00 0.00 2.18
568 948 2.761208 GTGCTTAGGAGAGGTGCTTAGA 59.239 50.000 0.00 0.00 0.00 2.10
569 949 3.027412 TGCTTAGGAGAGGTGCTTAGAG 58.973 50.000 0.00 0.00 0.00 2.43
570 950 3.292460 GCTTAGGAGAGGTGCTTAGAGA 58.708 50.000 0.00 0.00 0.00 3.10
571 951 3.702045 GCTTAGGAGAGGTGCTTAGAGAA 59.298 47.826 0.00 0.00 0.00 2.87
572 952 4.160626 GCTTAGGAGAGGTGCTTAGAGAAA 59.839 45.833 0.00 0.00 0.00 2.52
573 953 5.163353 GCTTAGGAGAGGTGCTTAGAGAAAT 60.163 44.000 0.00 0.00 0.00 2.17
574 954 6.041069 GCTTAGGAGAGGTGCTTAGAGAAATA 59.959 42.308 0.00 0.00 0.00 1.40
575 955 7.418025 GCTTAGGAGAGGTGCTTAGAGAAATAA 60.418 40.741 0.00 0.00 0.00 1.40
576 956 6.875972 AGGAGAGGTGCTTAGAGAAATAAA 57.124 37.500 0.00 0.00 0.00 1.40
577 957 6.645306 AGGAGAGGTGCTTAGAGAAATAAAC 58.355 40.000 0.00 0.00 0.00 2.01
578 958 5.818336 GGAGAGGTGCTTAGAGAAATAAACC 59.182 44.000 0.00 0.00 0.00 3.27
579 959 6.374417 AGAGGTGCTTAGAGAAATAAACCA 57.626 37.500 0.00 0.00 0.00 3.67
580 960 6.410540 AGAGGTGCTTAGAGAAATAAACCAG 58.589 40.000 0.00 0.00 0.00 4.00
581 961 6.213600 AGAGGTGCTTAGAGAAATAAACCAGA 59.786 38.462 0.00 0.00 0.00 3.86
582 962 6.779860 AGGTGCTTAGAGAAATAAACCAGAA 58.220 36.000 0.00 0.00 0.00 3.02
583 963 7.406104 AGGTGCTTAGAGAAATAAACCAGAAT 58.594 34.615 0.00 0.00 0.00 2.40
584 964 7.890655 AGGTGCTTAGAGAAATAAACCAGAATT 59.109 33.333 0.00 0.00 0.00 2.17
585 965 8.523658 GGTGCTTAGAGAAATAAACCAGAATTT 58.476 33.333 0.00 0.00 0.00 1.82
586 966 9.561270 GTGCTTAGAGAAATAAACCAGAATTTC 57.439 33.333 0.00 0.00 40.72 2.17
594 974 9.914131 AGAAATAAACCAGAATTTCTTAAGCAC 57.086 29.630 0.00 0.00 45.62 4.40
595 975 9.140286 GAAATAAACCAGAATTTCTTAAGCACC 57.860 33.333 0.00 0.00 38.49 5.01
596 976 4.766404 AACCAGAATTTCTTAAGCACCG 57.234 40.909 0.00 0.00 0.00 4.94
597 977 3.081804 ACCAGAATTTCTTAAGCACCGG 58.918 45.455 0.00 0.00 0.00 5.28
598 978 3.081804 CCAGAATTTCTTAAGCACCGGT 58.918 45.455 0.00 0.00 0.00 5.28
599 979 3.119849 CCAGAATTTCTTAAGCACCGGTG 60.120 47.826 30.66 30.66 0.00 4.94
612 992 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
613 993 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
614 994 2.014128 CCGGTGCTTATTTGTACAGGG 58.986 52.381 0.00 0.00 35.20 4.45
615 995 2.617021 CCGGTGCTTATTTGTACAGGGT 60.617 50.000 0.00 0.00 35.20 4.34
616 996 3.369681 CCGGTGCTTATTTGTACAGGGTA 60.370 47.826 0.00 0.00 35.20 3.69
617 997 3.869246 CGGTGCTTATTTGTACAGGGTAG 59.131 47.826 0.00 0.00 0.00 3.18
618 998 4.382254 CGGTGCTTATTTGTACAGGGTAGA 60.382 45.833 0.00 0.00 0.00 2.59
619 999 4.874396 GGTGCTTATTTGTACAGGGTAGAC 59.126 45.833 0.00 0.00 0.00 2.59
620 1000 4.565564 GTGCTTATTTGTACAGGGTAGACG 59.434 45.833 0.00 0.00 0.00 4.18
621 1001 3.554731 GCTTATTTGTACAGGGTAGACGC 59.445 47.826 0.00 0.00 0.00 5.19
622 1002 4.679905 GCTTATTTGTACAGGGTAGACGCT 60.680 45.833 0.00 0.00 39.95 5.07
623 1003 3.975168 ATTTGTACAGGGTAGACGCTT 57.025 42.857 0.00 0.00 37.00 4.68
624 1004 6.528537 TTATTTGTACAGGGTAGACGCTTA 57.471 37.500 0.00 0.00 37.00 3.09
625 1005 4.445452 TTTGTACAGGGTAGACGCTTAG 57.555 45.455 0.00 0.00 37.00 2.18
626 1006 1.747355 TGTACAGGGTAGACGCTTAGC 59.253 52.381 0.00 0.00 37.00 3.09
627 1007 2.022934 GTACAGGGTAGACGCTTAGCT 58.977 52.381 1.76 0.00 37.00 3.32
628 1008 2.431954 ACAGGGTAGACGCTTAGCTA 57.568 50.000 1.76 0.00 37.00 3.32
629 1009 2.731572 ACAGGGTAGACGCTTAGCTAA 58.268 47.619 5.94 5.94 37.00 3.09
630 1010 2.688958 ACAGGGTAGACGCTTAGCTAAG 59.311 50.000 26.20 26.20 37.00 2.18
641 1021 3.347958 CTTAGCTAAGCGTCTCTCCTG 57.652 52.381 20.13 0.00 0.00 3.86
642 1022 2.421751 TAGCTAAGCGTCTCTCCTGT 57.578 50.000 0.00 0.00 0.00 4.00
643 1023 2.421751 AGCTAAGCGTCTCTCCTGTA 57.578 50.000 0.00 0.00 0.00 2.74
644 1024 2.294074 AGCTAAGCGTCTCTCCTGTAG 58.706 52.381 0.00 0.00 0.00 2.74
645 1025 2.092861 AGCTAAGCGTCTCTCCTGTAGA 60.093 50.000 0.00 0.00 0.00 2.59
646 1026 2.683867 GCTAAGCGTCTCTCCTGTAGAA 59.316 50.000 0.00 0.00 32.46 2.10
647 1027 3.128938 GCTAAGCGTCTCTCCTGTAGAAA 59.871 47.826 0.00 0.00 32.46 2.52
648 1028 4.202070 GCTAAGCGTCTCTCCTGTAGAAAT 60.202 45.833 0.00 0.00 32.46 2.17
649 1029 5.008811 GCTAAGCGTCTCTCCTGTAGAAATA 59.991 44.000 0.00 0.00 32.46 1.40
650 1030 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
651 1031 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
652 1032 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
653 1033 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
654 1034 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
655 1035 4.647399 GTCTCTCCTGTAGAAATAGGCACT 59.353 45.833 0.00 0.00 36.55 4.40
656 1036 4.646945 TCTCTCCTGTAGAAATAGGCACTG 59.353 45.833 0.00 0.00 34.59 3.66
657 1037 3.706594 TCTCCTGTAGAAATAGGCACTGG 59.293 47.826 0.00 0.00 41.52 4.00
658 1038 3.450904 TCCTGTAGAAATAGGCACTGGT 58.549 45.455 0.00 0.00 41.52 4.00
659 1039 3.197766 TCCTGTAGAAATAGGCACTGGTG 59.802 47.826 0.00 0.00 41.52 4.17
673 1053 3.905784 CACTGGTGCTTCAGAAAAATCC 58.094 45.455 12.54 0.00 38.11 3.01
674 1054 2.554032 ACTGGTGCTTCAGAAAAATCCG 59.446 45.455 12.54 0.00 38.11 4.18
675 1055 1.885887 TGGTGCTTCAGAAAAATCCGG 59.114 47.619 0.00 0.00 0.00 5.14
676 1056 1.886542 GGTGCTTCAGAAAAATCCGGT 59.113 47.619 0.00 0.00 0.00 5.28
677 1057 2.296190 GGTGCTTCAGAAAAATCCGGTT 59.704 45.455 0.00 0.00 0.00 4.44
678 1058 3.243737 GGTGCTTCAGAAAAATCCGGTTT 60.244 43.478 0.00 0.00 0.00 3.27
679 1059 4.022676 GGTGCTTCAGAAAAATCCGGTTTA 60.023 41.667 0.00 0.00 0.00 2.01
680 1060 5.336451 GGTGCTTCAGAAAAATCCGGTTTAT 60.336 40.000 0.00 0.00 0.00 1.40
681 1061 6.156519 GTGCTTCAGAAAAATCCGGTTTATT 58.843 36.000 0.00 0.00 0.00 1.40
682 1062 6.645003 GTGCTTCAGAAAAATCCGGTTTATTT 59.355 34.615 0.00 0.00 0.00 1.40
683 1063 7.170828 GTGCTTCAGAAAAATCCGGTTTATTTT 59.829 33.333 0.00 3.75 37.98 1.82
684 1064 7.383843 TGCTTCAGAAAAATCCGGTTTATTTTC 59.616 33.333 19.44 19.44 40.40 2.29
685 1065 7.148639 GCTTCAGAAAAATCCGGTTTATTTTCC 60.149 37.037 21.51 9.38 40.77 3.13
686 1066 7.533289 TCAGAAAAATCCGGTTTATTTTCCT 57.467 32.000 21.51 11.01 40.77 3.36
687 1067 8.638629 TCAGAAAAATCCGGTTTATTTTCCTA 57.361 30.769 21.51 13.47 40.77 2.94
688 1068 9.080097 TCAGAAAAATCCGGTTTATTTTCCTAA 57.920 29.630 21.51 11.94 40.77 2.69
689 1069 9.353999 CAGAAAAATCCGGTTTATTTTCCTAAG 57.646 33.333 21.51 12.46 40.77 2.18
690 1070 8.033038 AGAAAAATCCGGTTTATTTTCCTAAGC 58.967 33.333 21.51 7.93 40.77 3.09
691 1071 6.844097 AAATCCGGTTTATTTTCCTAAGCA 57.156 33.333 0.00 0.00 0.00 3.91
692 1072 5.830000 ATCCGGTTTATTTTCCTAAGCAC 57.170 39.130 0.00 0.00 0.00 4.40
693 1073 4.011698 TCCGGTTTATTTTCCTAAGCACC 58.988 43.478 0.00 0.00 0.00 5.01
694 1074 3.759618 CCGGTTTATTTTCCTAAGCACCA 59.240 43.478 0.00 0.00 0.00 4.17
695 1075 4.380128 CCGGTTTATTTTCCTAAGCACCAC 60.380 45.833 0.00 0.00 0.00 4.16
696 1076 4.380128 CGGTTTATTTTCCTAAGCACCACC 60.380 45.833 0.00 0.00 0.00 4.61
697 1077 4.081862 GGTTTATTTTCCTAAGCACCACCC 60.082 45.833 0.00 0.00 0.00 4.61
698 1078 4.668138 TTATTTTCCTAAGCACCACCCT 57.332 40.909 0.00 0.00 0.00 4.34
699 1079 5.782677 TTATTTTCCTAAGCACCACCCTA 57.217 39.130 0.00 0.00 0.00 3.53
700 1080 4.668138 ATTTTCCTAAGCACCACCCTAA 57.332 40.909 0.00 0.00 0.00 2.69
701 1081 3.713826 TTTCCTAAGCACCACCCTAAG 57.286 47.619 0.00 0.00 0.00 2.18
702 1082 0.909623 TCCTAAGCACCACCCTAAGC 59.090 55.000 0.00 0.00 0.00 3.09
703 1083 0.618458 CCTAAGCACCACCCTAAGCA 59.382 55.000 0.00 0.00 0.00 3.91
704 1084 1.212935 CCTAAGCACCACCCTAAGCAT 59.787 52.381 0.00 0.00 0.00 3.79
705 1085 2.565841 CTAAGCACCACCCTAAGCATC 58.434 52.381 0.00 0.00 0.00 3.91
706 1086 0.995024 AAGCACCACCCTAAGCATCT 59.005 50.000 0.00 0.00 0.00 2.90
707 1087 0.995024 AGCACCACCCTAAGCATCTT 59.005 50.000 0.00 0.00 0.00 2.40
708 1088 1.355720 AGCACCACCCTAAGCATCTTT 59.644 47.619 0.00 0.00 0.00 2.52
709 1089 1.745653 GCACCACCCTAAGCATCTTTC 59.254 52.381 0.00 0.00 0.00 2.62
710 1090 2.879756 GCACCACCCTAAGCATCTTTCA 60.880 50.000 0.00 0.00 0.00 2.69
711 1091 3.624777 CACCACCCTAAGCATCTTTCAT 58.375 45.455 0.00 0.00 0.00 2.57
712 1092 4.019174 CACCACCCTAAGCATCTTTCATT 58.981 43.478 0.00 0.00 0.00 2.57
713 1093 4.019174 ACCACCCTAAGCATCTTTCATTG 58.981 43.478 0.00 0.00 0.00 2.82
714 1094 4.019174 CCACCCTAAGCATCTTTCATTGT 58.981 43.478 0.00 0.00 0.00 2.71
715 1095 5.192927 CCACCCTAAGCATCTTTCATTGTA 58.807 41.667 0.00 0.00 0.00 2.41
716 1096 5.066505 CCACCCTAAGCATCTTTCATTGTAC 59.933 44.000 0.00 0.00 0.00 2.90
717 1097 5.647658 CACCCTAAGCATCTTTCATTGTACA 59.352 40.000 0.00 0.00 0.00 2.90
718 1098 6.150976 CACCCTAAGCATCTTTCATTGTACAA 59.849 38.462 11.41 11.41 0.00 2.41
719 1099 6.375455 ACCCTAAGCATCTTTCATTGTACAAG 59.625 38.462 14.65 6.58 0.00 3.16
720 1100 6.183360 CCCTAAGCATCTTTCATTGTACAAGG 60.183 42.308 13.96 13.96 0.00 3.61
721 1101 4.708726 AGCATCTTTCATTGTACAAGGC 57.291 40.909 15.24 2.71 0.00 4.35
722 1102 3.445096 AGCATCTTTCATTGTACAAGGCC 59.555 43.478 15.24 0.00 0.00 5.19
723 1103 3.445096 GCATCTTTCATTGTACAAGGCCT 59.555 43.478 15.24 0.00 0.00 5.19
724 1104 4.640201 GCATCTTTCATTGTACAAGGCCTA 59.360 41.667 15.24 0.90 0.00 3.93
725 1105 5.125417 GCATCTTTCATTGTACAAGGCCTAA 59.875 40.000 15.24 8.34 0.00 2.69
795 1176 2.179517 CGTCCAGGTGTCTCGAGC 59.820 66.667 7.81 3.58 0.00 5.03
1121 1530 3.423154 CGGCGACAAGGACAAGCC 61.423 66.667 0.00 0.00 44.00 4.35
1308 1735 1.299926 CATCTACAGGTACCGCCGC 60.300 63.158 6.18 0.00 43.70 6.53
1325 1752 2.359975 CCGTCCCTGCTTTCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
1326 1753 2.359975 CGTCCCTGCTTTCCCACC 60.360 66.667 0.00 0.00 0.00 4.61
1608 2062 2.295909 TGGTTCTGCTGGTTTATGCAAC 59.704 45.455 0.00 0.00 38.81 4.17
1623 2077 2.088423 TGCAACGGGGTTATTCATGAC 58.912 47.619 0.00 0.00 0.00 3.06
1690 2147 5.749109 CCATCTGTTTAGTTTAGGCGAGTAG 59.251 44.000 0.00 0.00 0.00 2.57
1692 2149 7.415989 CCATCTGTTTAGTTTAGGCGAGTAGTA 60.416 40.741 0.00 0.00 0.00 1.82
1700 2164 7.746526 AGTTTAGGCGAGTAGTAATTTAACG 57.253 36.000 0.00 0.00 0.00 3.18
1701 2165 7.538575 AGTTTAGGCGAGTAGTAATTTAACGA 58.461 34.615 0.00 0.00 0.00 3.85
1702 2166 8.028938 AGTTTAGGCGAGTAGTAATTTAACGAA 58.971 33.333 0.00 0.00 0.00 3.85
1703 2167 7.740519 TTAGGCGAGTAGTAATTTAACGAAC 57.259 36.000 0.00 0.00 0.00 3.95
1750 2224 4.406001 TGCTGATTCGACGCTAGTATAG 57.594 45.455 0.00 0.00 43.09 1.31
1834 2325 2.138320 CAGAATATGCCGATGCGAACT 58.862 47.619 0.00 0.00 41.78 3.01
1884 2375 5.877012 CCGATACATTATTGGCTTGCTCTAT 59.123 40.000 0.00 0.00 33.13 1.98
1891 2382 6.624352 TTATTGGCTTGCTCTATCATGTTC 57.376 37.500 0.00 0.00 0.00 3.18
1899 2390 8.233190 GGCTTGCTCTATCATGTTCATTAATAC 58.767 37.037 0.00 0.00 0.00 1.89
1905 2396 8.837788 TCTATCATGTTCATTAATACTGCCAG 57.162 34.615 0.00 0.00 0.00 4.85
1916 2407 0.885879 TACTGCCAGTACTCGGTGTG 59.114 55.000 0.00 3.79 0.00 3.82
2032 2534 8.821686 TGAACTGTCATGTCCCAAAATATAAT 57.178 30.769 0.00 0.00 0.00 1.28
2033 2535 8.685427 TGAACTGTCATGTCCCAAAATATAATG 58.315 33.333 0.00 0.00 0.00 1.90
2035 2537 8.225603 ACTGTCATGTCCCAAAATATAATGTC 57.774 34.615 0.00 0.00 0.00 3.06
2046 2548 6.587226 CCAAAATATAATGTCATTGGGATGCG 59.413 38.462 8.39 0.00 34.94 4.73
2095 2625 0.987294 AGGCAACATACTGTGCTCCT 59.013 50.000 0.00 0.00 41.41 3.69
2179 2713 2.742053 CCATAAACTTGGTCACTCGGTG 59.258 50.000 0.00 0.00 34.45 4.94
2203 2742 6.823689 TGCCATCTAACTCCAGTATTTCTTTC 59.176 38.462 0.00 0.00 0.00 2.62
2230 2769 2.413112 CACAATCTGTCATCGACCACAC 59.587 50.000 0.00 0.00 0.00 3.82
2237 2776 0.038618 TCATCGACCACACGGACTTG 60.039 55.000 0.00 0.00 35.59 3.16
2314 2853 5.531287 ACAATTATTCCCTAAAGATGTCCGC 59.469 40.000 0.00 0.00 0.00 5.54
2334 2873 2.223112 GCGACATTGTGACATGATGGAC 60.223 50.000 0.00 0.00 0.00 4.02
2359 2898 2.087646 GCTGAATTCCCTTGTCTGTCC 58.912 52.381 2.27 0.00 0.00 4.02
2364 2903 0.834612 TTCCCTTGTCTGTCCGTGTT 59.165 50.000 0.00 0.00 0.00 3.32
2365 2904 1.707106 TCCCTTGTCTGTCCGTGTTA 58.293 50.000 0.00 0.00 0.00 2.41
2366 2905 1.342174 TCCCTTGTCTGTCCGTGTTAC 59.658 52.381 0.00 0.00 0.00 2.50
2558 3097 2.251642 CGGGCGGCCATTAGCTTAC 61.252 63.158 29.19 0.00 43.05 2.34
2609 3148 4.320421 CCACATATATTTGGCACATGTCCG 60.320 45.833 4.97 0.00 39.30 4.79
2661 3200 1.153628 CGAACTGGGTAGCCGGAAG 60.154 63.158 26.49 10.93 0.00 3.46
2662 3201 1.885163 CGAACTGGGTAGCCGGAAGT 61.885 60.000 26.49 11.62 0.00 3.01
2663 3202 0.323957 GAACTGGGTAGCCGGAAGTT 59.676 55.000 26.49 19.31 33.91 2.66
2672 3211 0.738389 AGCCGGAAGTTGTTGTTGTG 59.262 50.000 5.05 0.00 0.00 3.33
2674 3213 0.383949 CCGGAAGTTGTTGTTGTGGG 59.616 55.000 0.00 0.00 0.00 4.61
2684 3223 1.112315 TTGTTGTGGGTGGTGATGCC 61.112 55.000 0.00 0.00 37.90 4.40
2689 3228 3.661648 GGGTGGTGATGCCCCAGT 61.662 66.667 0.00 0.00 38.99 4.00
2690 3229 2.305607 GGGTGGTGATGCCCCAGTA 61.306 63.158 0.00 0.00 38.99 2.74
2830 3370 0.606944 TAATTCCTGTTTGCGCCGGT 60.607 50.000 4.18 0.00 0.00 5.28
2880 3420 2.864968 ACGAAGTTGTCTGATAGCGTC 58.135 47.619 0.00 0.00 37.78 5.19
2881 3421 2.228103 ACGAAGTTGTCTGATAGCGTCA 59.772 45.455 5.35 0.00 37.78 4.35
2882 3422 3.242518 CGAAGTTGTCTGATAGCGTCAA 58.757 45.455 5.35 0.00 36.14 3.18
2884 3424 4.149922 CGAAGTTGTCTGATAGCGTCAAAA 59.850 41.667 5.35 0.00 36.14 2.44
2885 3425 5.333035 CGAAGTTGTCTGATAGCGTCAAAAA 60.333 40.000 5.35 0.00 36.14 1.94
2886 3426 5.344207 AGTTGTCTGATAGCGTCAAAAAC 57.656 39.130 0.00 2.64 36.14 2.43
2897 3437 2.892613 CGTCAAAAACGCTCTCAAGTC 58.107 47.619 0.00 0.00 45.76 3.01
2898 3438 2.540101 CGTCAAAAACGCTCTCAAGTCT 59.460 45.455 0.00 0.00 45.76 3.24
2899 3439 3.362110 CGTCAAAAACGCTCTCAAGTCTC 60.362 47.826 0.00 0.00 45.76 3.36
2900 3440 3.059529 GTCAAAAACGCTCTCAAGTCTCC 60.060 47.826 0.00 0.00 0.00 3.71
2901 3441 1.784525 AAAACGCTCTCAAGTCTCCG 58.215 50.000 0.00 0.00 0.00 4.63
2902 3442 0.674534 AAACGCTCTCAAGTCTCCGT 59.325 50.000 0.00 0.00 0.00 4.69
2903 3443 0.674534 AACGCTCTCAAGTCTCCGTT 59.325 50.000 0.00 0.00 34.54 4.44
2904 3444 0.039074 ACGCTCTCAAGTCTCCGTTG 60.039 55.000 0.00 0.00 0.00 4.10
2905 3445 0.039074 CGCTCTCAAGTCTCCGTTGT 60.039 55.000 0.00 0.00 0.00 3.32
2906 3446 1.704070 GCTCTCAAGTCTCCGTTGTC 58.296 55.000 0.00 0.00 0.00 3.18
2907 3447 1.970447 CTCTCAAGTCTCCGTTGTCG 58.030 55.000 0.00 0.00 0.00 4.35
2908 3448 0.039437 TCTCAAGTCTCCGTTGTCGC 60.039 55.000 0.00 0.00 35.54 5.19
2909 3449 0.039074 CTCAAGTCTCCGTTGTCGCT 60.039 55.000 0.00 0.00 35.54 4.93
2910 3450 0.318699 TCAAGTCTCCGTTGTCGCTG 60.319 55.000 0.00 0.00 35.54 5.18
2911 3451 0.318699 CAAGTCTCCGTTGTCGCTGA 60.319 55.000 0.00 0.00 35.54 4.26
2944 3484 3.395941 AGGTCAGGGTGTTCAGAAGAATT 59.604 43.478 0.00 0.00 35.92 2.17
2950 3490 5.067674 CAGGGTGTTCAGAAGAATTTGACAA 59.932 40.000 0.00 0.00 35.92 3.18
3013 3553 2.758089 GGAGCAGTCAAGCGCATGG 61.758 63.158 13.33 0.00 40.15 3.66
3171 3746 3.850098 CTTGCTTGACCGGCCACCT 62.850 63.158 0.00 0.00 0.00 4.00
3211 3786 3.364366 GCGGCTCATTGTATATTGCTGTC 60.364 47.826 0.00 0.00 0.00 3.51
3236 3811 1.073216 CTGGACACGACACTCGATGC 61.073 60.000 0.00 0.00 43.74 3.91
3296 3884 0.737715 AACGAAGCGATCTGTCCAGC 60.738 55.000 0.00 0.00 0.00 4.85
3300 3888 1.599606 AAGCGATCTGTCCAGCGTCT 61.600 55.000 0.00 0.00 34.34 4.18
3303 3891 0.803768 CGATCTGTCCAGCGTCTTGG 60.804 60.000 0.00 0.00 39.70 3.61
3320 3908 0.920763 TGGCACCCTCCAGAATCCAT 60.921 55.000 0.00 0.00 0.00 3.41
3324 3912 1.565759 CACCCTCCAGAATCCATGGAA 59.434 52.381 20.67 1.96 46.04 3.53
3336 3924 1.918262 TCCATGGAATCTGCAGGTTCT 59.082 47.619 32.85 16.35 0.00 3.01
3371 3960 2.297701 GAGCAGTTTGGTTTCACTGGA 58.702 47.619 1.72 0.00 40.77 3.86
3372 3961 2.887152 GAGCAGTTTGGTTTCACTGGAT 59.113 45.455 1.72 0.00 40.77 3.41
3373 3962 4.072131 GAGCAGTTTGGTTTCACTGGATA 58.928 43.478 1.72 0.00 40.77 2.59
3391 3980 3.066760 GGATAAGTTGGTACCAGCAATGC 59.933 47.826 27.99 21.07 37.94 3.56
3407 3996 3.365767 GCAATGCTCTGTCTTCTTTCACC 60.366 47.826 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.867174 TCATGACCAACGTTACTGTCATTAG 59.133 40.000 25.47 19.11 43.87 1.73
30 31 6.312672 TCACATTATCATGACCAACGTTACTG 59.687 38.462 0.00 0.00 34.11 2.74
37 38 6.803320 CACAAGTTCACATTATCATGACCAAC 59.197 38.462 0.00 0.00 34.11 3.77
67 68 6.263168 CCCCCACTATGACATATCAAAAGAAC 59.737 42.308 0.00 0.00 38.69 3.01
73 74 5.726308 CCTATCCCCCACTATGACATATCAA 59.274 44.000 0.00 0.00 38.69 2.57
93 94 4.324254 CCACAATTGTGTACCCTCACCTAT 60.324 45.833 31.20 0.00 44.21 2.57
100 101 0.398696 TCGCCACAATTGTGTACCCT 59.601 50.000 31.20 0.00 44.21 4.34
176 507 3.720818 CGACACAAATTTATGATGCGAGC 59.279 43.478 2.88 0.00 0.00 5.03
191 522 2.502163 CGAGAGTTTCGCGACACAA 58.498 52.632 25.67 7.93 42.24 3.33
252 583 9.567848 CCGTGTTGCTTATTTATTTATTTGAGT 57.432 29.630 0.00 0.00 0.00 3.41
353 733 8.150296 AGCAAAAACCATCCTATTATATTTGGC 58.850 33.333 0.00 0.00 0.00 4.52
362 742 6.010219 ACTACACAGCAAAAACCATCCTATT 58.990 36.000 0.00 0.00 0.00 1.73
377 757 5.064834 GGAAAAATGGCTAGTACTACACAGC 59.935 44.000 6.80 6.80 33.26 4.40
388 768 3.193479 GTGGTGGAAGGAAAAATGGCTAG 59.807 47.826 0.00 0.00 0.00 3.42
389 769 3.161866 GTGGTGGAAGGAAAAATGGCTA 58.838 45.455 0.00 0.00 0.00 3.93
390 770 1.970640 GTGGTGGAAGGAAAAATGGCT 59.029 47.619 0.00 0.00 0.00 4.75
391 771 1.691434 TGTGGTGGAAGGAAAAATGGC 59.309 47.619 0.00 0.00 0.00 4.40
392 772 3.133721 TGTTGTGGTGGAAGGAAAAATGG 59.866 43.478 0.00 0.00 0.00 3.16
393 773 4.399004 TGTTGTGGTGGAAGGAAAAATG 57.601 40.909 0.00 0.00 0.00 2.32
394 774 5.428184 TTTGTTGTGGTGGAAGGAAAAAT 57.572 34.783 0.00 0.00 0.00 1.82
453 833 7.253354 CGCTTCTCTGTTACAGTATTTCGTAAG 60.253 40.741 12.41 0.00 32.61 2.34
456 836 4.857588 CGCTTCTCTGTTACAGTATTTCGT 59.142 41.667 12.41 0.00 32.61 3.85
457 837 5.093457 TCGCTTCTCTGTTACAGTATTTCG 58.907 41.667 12.41 11.31 32.61 3.46
459 839 5.812642 CCATCGCTTCTCTGTTACAGTATTT 59.187 40.000 12.41 0.00 32.61 1.40
461 841 4.402793 ACCATCGCTTCTCTGTTACAGTAT 59.597 41.667 12.41 0.00 32.61 2.12
462 842 3.762288 ACCATCGCTTCTCTGTTACAGTA 59.238 43.478 12.41 0.00 32.61 2.74
463 843 2.563179 ACCATCGCTTCTCTGTTACAGT 59.437 45.455 12.41 0.00 32.61 3.55
464 844 3.238108 ACCATCGCTTCTCTGTTACAG 57.762 47.619 5.94 5.94 0.00 2.74
465 845 3.678056 AACCATCGCTTCTCTGTTACA 57.322 42.857 0.00 0.00 0.00 2.41
466 846 5.444218 CGTAAAACCATCGCTTCTCTGTTAC 60.444 44.000 0.00 0.00 0.00 2.50
478 858 1.393539 CTCTGTGCCGTAAAACCATCG 59.606 52.381 0.00 0.00 0.00 3.84
529 909 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
530 910 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
531 911 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
532 912 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
533 913 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
534 914 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
535 915 2.504175 TCCTAAGCACCTCCCATTGTAC 59.496 50.000 0.00 0.00 0.00 2.90
536 916 2.771943 CTCCTAAGCACCTCCCATTGTA 59.228 50.000 0.00 0.00 0.00 2.41
537 917 1.561542 CTCCTAAGCACCTCCCATTGT 59.438 52.381 0.00 0.00 0.00 2.71
538 918 1.839994 TCTCCTAAGCACCTCCCATTG 59.160 52.381 0.00 0.00 0.00 2.82
539 919 2.122768 CTCTCCTAAGCACCTCCCATT 58.877 52.381 0.00 0.00 0.00 3.16
540 920 1.694048 CCTCTCCTAAGCACCTCCCAT 60.694 57.143 0.00 0.00 0.00 4.00
541 921 0.325671 CCTCTCCTAAGCACCTCCCA 60.326 60.000 0.00 0.00 0.00 4.37
542 922 0.325765 ACCTCTCCTAAGCACCTCCC 60.326 60.000 0.00 0.00 0.00 4.30
543 923 0.827368 CACCTCTCCTAAGCACCTCC 59.173 60.000 0.00 0.00 0.00 4.30
544 924 0.176910 GCACCTCTCCTAAGCACCTC 59.823 60.000 0.00 0.00 0.00 3.85
545 925 0.252467 AGCACCTCTCCTAAGCACCT 60.252 55.000 0.00 0.00 0.00 4.00
546 926 0.615850 AAGCACCTCTCCTAAGCACC 59.384 55.000 0.00 0.00 0.00 5.01
547 927 2.761208 TCTAAGCACCTCTCCTAAGCAC 59.239 50.000 0.00 0.00 0.00 4.40
548 928 3.027412 CTCTAAGCACCTCTCCTAAGCA 58.973 50.000 0.00 0.00 0.00 3.91
549 929 3.292460 TCTCTAAGCACCTCTCCTAAGC 58.708 50.000 0.00 0.00 0.00 3.09
550 930 5.923733 TTTCTCTAAGCACCTCTCCTAAG 57.076 43.478 0.00 0.00 0.00 2.18
551 931 7.973048 TTATTTCTCTAAGCACCTCTCCTAA 57.027 36.000 0.00 0.00 0.00 2.69
552 932 7.147707 GGTTTATTTCTCTAAGCACCTCTCCTA 60.148 40.741 0.00 0.00 0.00 2.94
553 933 6.352308 GGTTTATTTCTCTAAGCACCTCTCCT 60.352 42.308 0.00 0.00 0.00 3.69
554 934 5.818336 GGTTTATTTCTCTAAGCACCTCTCC 59.182 44.000 0.00 0.00 0.00 3.71
555 935 6.407202 TGGTTTATTTCTCTAAGCACCTCTC 58.593 40.000 0.00 0.00 0.00 3.20
556 936 6.213600 TCTGGTTTATTTCTCTAAGCACCTCT 59.786 38.462 0.00 0.00 0.00 3.69
557 937 6.407202 TCTGGTTTATTTCTCTAAGCACCTC 58.593 40.000 0.00 0.00 0.00 3.85
558 938 6.374417 TCTGGTTTATTTCTCTAAGCACCT 57.626 37.500 0.00 0.00 0.00 4.00
559 939 7.631717 ATTCTGGTTTATTTCTCTAAGCACC 57.368 36.000 0.00 0.00 0.00 5.01
560 940 9.561270 GAAATTCTGGTTTATTTCTCTAAGCAC 57.439 33.333 0.00 0.00 37.63 4.40
561 941 9.520515 AGAAATTCTGGTTTATTTCTCTAAGCA 57.479 29.630 0.00 0.00 43.89 3.91
569 949 9.140286 GGTGCTTAAGAAATTCTGGTTTATTTC 57.860 33.333 6.67 0.00 39.77 2.17
570 950 7.812669 CGGTGCTTAAGAAATTCTGGTTTATTT 59.187 33.333 6.67 0.00 0.00 1.40
571 951 7.312899 CGGTGCTTAAGAAATTCTGGTTTATT 58.687 34.615 6.67 0.00 0.00 1.40
572 952 6.127730 CCGGTGCTTAAGAAATTCTGGTTTAT 60.128 38.462 6.67 0.00 0.00 1.40
573 953 5.182380 CCGGTGCTTAAGAAATTCTGGTTTA 59.818 40.000 6.67 0.00 0.00 2.01
574 954 4.022329 CCGGTGCTTAAGAAATTCTGGTTT 60.022 41.667 6.67 0.00 0.00 3.27
575 955 3.506067 CCGGTGCTTAAGAAATTCTGGTT 59.494 43.478 6.67 0.00 0.00 3.67
576 956 3.081804 CCGGTGCTTAAGAAATTCTGGT 58.918 45.455 6.67 0.00 0.00 4.00
577 957 3.081804 ACCGGTGCTTAAGAAATTCTGG 58.918 45.455 6.12 1.05 0.00 3.86
578 958 4.083581 CACCGGTGCTTAAGAAATTCTG 57.916 45.455 24.02 0.00 0.00 3.02
592 972 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
593 973 2.617021 CCCTGTACAAATAAGCACCGGT 60.617 50.000 0.00 0.00 0.00 5.28
594 974 2.014128 CCCTGTACAAATAAGCACCGG 58.986 52.381 0.00 0.00 0.00 5.28
595 975 2.706890 ACCCTGTACAAATAAGCACCG 58.293 47.619 0.00 0.00 0.00 4.94
596 976 4.874396 GTCTACCCTGTACAAATAAGCACC 59.126 45.833 0.00 0.00 0.00 5.01
597 977 4.565564 CGTCTACCCTGTACAAATAAGCAC 59.434 45.833 0.00 0.00 0.00 4.40
598 978 4.751060 CGTCTACCCTGTACAAATAAGCA 58.249 43.478 0.00 0.00 0.00 3.91
599 979 3.554731 GCGTCTACCCTGTACAAATAAGC 59.445 47.826 0.00 0.00 0.00 3.09
600 980 5.007385 AGCGTCTACCCTGTACAAATAAG 57.993 43.478 0.00 0.00 0.00 1.73
601 981 5.410355 AAGCGTCTACCCTGTACAAATAA 57.590 39.130 0.00 0.00 0.00 1.40
602 982 5.450965 GCTAAGCGTCTACCCTGTACAAATA 60.451 44.000 0.00 0.00 0.00 1.40
603 983 3.975168 AAGCGTCTACCCTGTACAAAT 57.025 42.857 0.00 0.00 0.00 2.32
604 984 3.367703 GCTAAGCGTCTACCCTGTACAAA 60.368 47.826 0.00 0.00 0.00 2.83
605 985 2.165030 GCTAAGCGTCTACCCTGTACAA 59.835 50.000 0.00 0.00 0.00 2.41
606 986 1.747355 GCTAAGCGTCTACCCTGTACA 59.253 52.381 0.00 0.00 0.00 2.90
607 987 2.022934 AGCTAAGCGTCTACCCTGTAC 58.977 52.381 0.00 0.00 0.00 2.90
608 988 2.431954 AGCTAAGCGTCTACCCTGTA 57.568 50.000 0.00 0.00 0.00 2.74
609 989 2.431954 TAGCTAAGCGTCTACCCTGT 57.568 50.000 0.00 0.00 0.00 4.00
610 990 3.357166 CTTAGCTAAGCGTCTACCCTG 57.643 52.381 20.13 0.00 0.00 4.45
621 1001 2.685897 ACAGGAGAGACGCTTAGCTAAG 59.314 50.000 26.20 26.20 36.40 2.18
622 1002 2.724454 ACAGGAGAGACGCTTAGCTAA 58.276 47.619 5.94 5.94 0.00 3.09
623 1003 2.421751 ACAGGAGAGACGCTTAGCTA 57.578 50.000 1.76 0.00 0.00 3.32
624 1004 2.092861 TCTACAGGAGAGACGCTTAGCT 60.093 50.000 1.76 0.00 0.00 3.32
625 1005 2.290464 TCTACAGGAGAGACGCTTAGC 58.710 52.381 0.00 0.00 0.00 3.09
626 1006 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
627 1007 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
628 1008 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
629 1009 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
630 1010 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
631 1011 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
632 1012 4.647399 AGTGCCTATTTCTACAGGAGAGAC 59.353 45.833 0.00 0.00 34.93 3.36
633 1013 4.646945 CAGTGCCTATTTCTACAGGAGAGA 59.353 45.833 0.00 0.00 34.93 3.10
634 1014 4.202202 CCAGTGCCTATTTCTACAGGAGAG 60.202 50.000 0.00 0.00 34.93 3.20
635 1015 3.706594 CCAGTGCCTATTTCTACAGGAGA 59.293 47.826 0.00 0.00 33.42 3.71
636 1016 3.452627 ACCAGTGCCTATTTCTACAGGAG 59.547 47.826 0.00 0.00 33.42 3.69
637 1017 3.197766 CACCAGTGCCTATTTCTACAGGA 59.802 47.826 0.00 0.00 33.42 3.86
638 1018 3.535561 CACCAGTGCCTATTTCTACAGG 58.464 50.000 0.00 0.00 34.85 4.00
652 1032 3.610114 CGGATTTTTCTGAAGCACCAGTG 60.610 47.826 5.46 0.00 35.71 3.66
653 1033 2.554032 CGGATTTTTCTGAAGCACCAGT 59.446 45.455 5.46 0.00 35.71 4.00
654 1034 2.095059 CCGGATTTTTCTGAAGCACCAG 60.095 50.000 0.00 0.00 35.55 4.00
655 1035 1.885887 CCGGATTTTTCTGAAGCACCA 59.114 47.619 0.00 0.00 0.00 4.17
656 1036 1.886542 ACCGGATTTTTCTGAAGCACC 59.113 47.619 9.46 0.00 0.00 5.01
657 1037 3.643159 AACCGGATTTTTCTGAAGCAC 57.357 42.857 9.46 0.00 0.00 4.40
658 1038 5.975693 ATAAACCGGATTTTTCTGAAGCA 57.024 34.783 9.46 0.00 0.00 3.91
659 1039 7.148639 GGAAAATAAACCGGATTTTTCTGAAGC 60.149 37.037 9.46 0.00 36.78 3.86
660 1040 8.088365 AGGAAAATAAACCGGATTTTTCTGAAG 58.912 33.333 16.20 0.00 39.57 3.02
661 1041 7.958088 AGGAAAATAAACCGGATTTTTCTGAA 58.042 30.769 16.20 0.00 39.57 3.02
662 1042 7.533289 AGGAAAATAAACCGGATTTTTCTGA 57.467 32.000 16.20 0.00 39.57 3.27
663 1043 9.353999 CTTAGGAAAATAAACCGGATTTTTCTG 57.646 33.333 22.29 9.54 40.68 3.02
664 1044 8.033038 GCTTAGGAAAATAAACCGGATTTTTCT 58.967 33.333 19.29 19.29 42.33 2.52
665 1045 7.815549 TGCTTAGGAAAATAAACCGGATTTTTC 59.184 33.333 9.46 16.13 36.78 2.29
666 1046 7.601130 GTGCTTAGGAAAATAAACCGGATTTTT 59.399 33.333 9.46 8.25 36.78 1.94
667 1047 7.094631 GTGCTTAGGAAAATAAACCGGATTTT 58.905 34.615 9.46 10.52 38.81 1.82
668 1048 6.350696 GGTGCTTAGGAAAATAAACCGGATTT 60.351 38.462 9.46 7.90 0.00 2.17
669 1049 5.126545 GGTGCTTAGGAAAATAAACCGGATT 59.873 40.000 9.46 4.89 0.00 3.01
670 1050 4.643334 GGTGCTTAGGAAAATAAACCGGAT 59.357 41.667 9.46 0.00 0.00 4.18
671 1051 4.011698 GGTGCTTAGGAAAATAAACCGGA 58.988 43.478 9.46 0.00 0.00 5.14
672 1052 3.759618 TGGTGCTTAGGAAAATAAACCGG 59.240 43.478 0.00 0.00 0.00 5.28
673 1053 4.380128 GGTGGTGCTTAGGAAAATAAACCG 60.380 45.833 0.00 0.00 0.00 4.44
674 1054 4.081862 GGGTGGTGCTTAGGAAAATAAACC 60.082 45.833 0.00 0.00 0.00 3.27
675 1055 4.770531 AGGGTGGTGCTTAGGAAAATAAAC 59.229 41.667 0.00 0.00 0.00 2.01
676 1056 5.005628 AGGGTGGTGCTTAGGAAAATAAA 57.994 39.130 0.00 0.00 0.00 1.40
677 1057 4.668138 AGGGTGGTGCTTAGGAAAATAA 57.332 40.909 0.00 0.00 0.00 1.40
678 1058 5.751586 CTTAGGGTGGTGCTTAGGAAAATA 58.248 41.667 0.00 0.00 0.00 1.40
679 1059 4.600062 CTTAGGGTGGTGCTTAGGAAAAT 58.400 43.478 0.00 0.00 0.00 1.82
680 1060 3.812882 GCTTAGGGTGGTGCTTAGGAAAA 60.813 47.826 0.00 0.00 0.00 2.29
681 1061 2.290705 GCTTAGGGTGGTGCTTAGGAAA 60.291 50.000 0.00 0.00 0.00 3.13
682 1062 1.280998 GCTTAGGGTGGTGCTTAGGAA 59.719 52.381 0.00 0.00 0.00 3.36
683 1063 0.909623 GCTTAGGGTGGTGCTTAGGA 59.090 55.000 0.00 0.00 0.00 2.94
684 1064 0.618458 TGCTTAGGGTGGTGCTTAGG 59.382 55.000 0.00 0.00 0.00 2.69
685 1065 2.171448 AGATGCTTAGGGTGGTGCTTAG 59.829 50.000 0.00 0.00 0.00 2.18
686 1066 2.196595 AGATGCTTAGGGTGGTGCTTA 58.803 47.619 0.00 0.00 0.00 3.09
687 1067 0.995024 AGATGCTTAGGGTGGTGCTT 59.005 50.000 0.00 0.00 0.00 3.91
688 1068 0.995024 AAGATGCTTAGGGTGGTGCT 59.005 50.000 0.00 0.00 0.00 4.40
689 1069 1.745653 GAAAGATGCTTAGGGTGGTGC 59.254 52.381 0.00 0.00 0.00 5.01
690 1070 3.071874 TGAAAGATGCTTAGGGTGGTG 57.928 47.619 0.00 0.00 0.00 4.17
691 1071 4.019174 CAATGAAAGATGCTTAGGGTGGT 58.981 43.478 0.00 0.00 0.00 4.16
692 1072 4.019174 ACAATGAAAGATGCTTAGGGTGG 58.981 43.478 0.00 0.00 0.00 4.61
693 1073 5.647658 TGTACAATGAAAGATGCTTAGGGTG 59.352 40.000 0.00 0.00 0.00 4.61
694 1074 5.815581 TGTACAATGAAAGATGCTTAGGGT 58.184 37.500 0.00 0.00 0.00 4.34
695 1075 6.183360 CCTTGTACAATGAAAGATGCTTAGGG 60.183 42.308 9.13 0.00 0.00 3.53
696 1076 6.678900 GCCTTGTACAATGAAAGATGCTTAGG 60.679 42.308 14.26 5.70 0.00 2.69
697 1077 6.261118 GCCTTGTACAATGAAAGATGCTTAG 58.739 40.000 14.26 0.00 0.00 2.18
698 1078 5.125417 GGCCTTGTACAATGAAAGATGCTTA 59.875 40.000 14.26 0.00 0.00 3.09
699 1079 4.082026 GGCCTTGTACAATGAAAGATGCTT 60.082 41.667 14.26 0.00 0.00 3.91
700 1080 3.445096 GGCCTTGTACAATGAAAGATGCT 59.555 43.478 14.26 0.00 0.00 3.79
701 1081 3.445096 AGGCCTTGTACAATGAAAGATGC 59.555 43.478 14.26 5.37 0.00 3.91
702 1082 6.150976 TGTTAGGCCTTGTACAATGAAAGATG 59.849 38.462 12.58 0.00 0.00 2.90
703 1083 6.245408 TGTTAGGCCTTGTACAATGAAAGAT 58.755 36.000 12.58 0.00 0.00 2.40
704 1084 5.626142 TGTTAGGCCTTGTACAATGAAAGA 58.374 37.500 12.58 0.00 0.00 2.52
705 1085 5.957842 TGTTAGGCCTTGTACAATGAAAG 57.042 39.130 12.58 0.00 0.00 2.62
706 1086 5.278071 CGTTGTTAGGCCTTGTACAATGAAA 60.278 40.000 27.01 7.17 38.94 2.69
707 1087 4.214545 CGTTGTTAGGCCTTGTACAATGAA 59.785 41.667 27.01 7.80 38.94 2.57
708 1088 3.749088 CGTTGTTAGGCCTTGTACAATGA 59.251 43.478 27.01 9.80 38.94 2.57
709 1089 3.500680 ACGTTGTTAGGCCTTGTACAATG 59.499 43.478 28.12 28.12 41.16 2.82
710 1090 3.500680 CACGTTGTTAGGCCTTGTACAAT 59.499 43.478 22.68 11.12 33.57 2.71
711 1091 2.873472 CACGTTGTTAGGCCTTGTACAA 59.127 45.455 12.58 16.60 0.00 2.41
712 1092 2.485903 CACGTTGTTAGGCCTTGTACA 58.514 47.619 12.58 10.95 0.00 2.90
713 1093 1.196127 GCACGTTGTTAGGCCTTGTAC 59.804 52.381 12.58 8.07 0.00 2.90
714 1094 1.515081 GCACGTTGTTAGGCCTTGTA 58.485 50.000 12.58 0.00 0.00 2.41
715 1095 1.170290 GGCACGTTGTTAGGCCTTGT 61.170 55.000 12.58 0.00 43.09 3.16
716 1096 1.579429 GGCACGTTGTTAGGCCTTG 59.421 57.895 12.58 1.24 43.09 3.61
717 1097 4.074647 GGCACGTTGTTAGGCCTT 57.925 55.556 12.58 0.00 43.09 4.35
719 1099 1.525941 TTAAGGCACGTTGTTAGGCC 58.474 50.000 4.24 4.24 46.77 5.19
720 1100 2.222953 CGATTAAGGCACGTTGTTAGGC 60.223 50.000 0.00 0.00 0.00 3.93
721 1101 2.222953 GCGATTAAGGCACGTTGTTAGG 60.223 50.000 0.00 0.00 0.00 2.69
722 1102 2.671396 AGCGATTAAGGCACGTTGTTAG 59.329 45.455 4.36 0.00 0.00 2.34
723 1103 2.690786 AGCGATTAAGGCACGTTGTTA 58.309 42.857 4.36 0.00 0.00 2.41
724 1104 1.519408 AGCGATTAAGGCACGTTGTT 58.481 45.000 4.36 0.00 0.00 2.83
725 1105 2.373540 TAGCGATTAAGGCACGTTGT 57.626 45.000 4.36 0.00 0.00 3.32
836 1217 1.114627 GCAGGGGCATAAAAAGAGGG 58.885 55.000 0.00 0.00 40.72 4.30
1308 1735 2.359975 GTGGGAAAGCAGGGACGG 60.360 66.667 0.00 0.00 0.00 4.79
1325 1752 1.739067 GGACATTTCCGAACAGAGGG 58.261 55.000 0.00 0.00 29.98 4.30
1582 2030 0.535102 AAACCAGCAGAACCACGAGG 60.535 55.000 0.00 0.00 42.21 4.63
1594 2042 1.248101 ACCCCGTTGCATAAACCAGC 61.248 55.000 0.00 0.00 35.13 4.85
1677 2131 7.740519 TCGTTAAATTACTACTCGCCTAAAC 57.259 36.000 0.00 0.00 0.00 2.01
1690 2147 6.951256 ACGAGGTTAGGTTCGTTAAATTAC 57.049 37.500 0.00 0.00 46.87 1.89
1699 2163 4.990257 TCTAATGAACGAGGTTAGGTTCG 58.010 43.478 0.00 0.00 44.18 3.95
1700 2164 6.313164 CCTTTCTAATGAACGAGGTTAGGTTC 59.687 42.308 0.00 0.00 42.17 3.62
1701 2165 6.171213 CCTTTCTAATGAACGAGGTTAGGTT 58.829 40.000 0.00 0.00 29.74 3.50
1702 2166 5.247792 ACCTTTCTAATGAACGAGGTTAGGT 59.752 40.000 0.00 0.00 39.23 3.08
1703 2167 5.731591 ACCTTTCTAATGAACGAGGTTAGG 58.268 41.667 0.00 0.00 39.23 2.69
1750 2224 4.660789 AATTAAGCATTGATGGACTGCC 57.339 40.909 0.00 0.00 36.56 4.85
1812 2303 3.057019 GTTCGCATCGGCATATTCTGTA 58.943 45.455 0.00 0.00 41.24 2.74
1834 2325 7.487829 GCAACAAATAATATGCCGAGAGAAAAA 59.512 33.333 0.00 0.00 32.73 1.94
1884 2375 7.564793 AGTACTGGCAGTATTAATGAACATGA 58.435 34.615 28.49 1.62 32.65 3.07
1891 2382 4.745125 CACCGAGTACTGGCAGTATTAATG 59.255 45.833 28.49 18.30 32.65 1.90
1899 2390 0.667487 CACACACCGAGTACTGGCAG 60.667 60.000 14.16 14.16 0.00 4.85
1901 2392 0.599558 TACACACACCGAGTACTGGC 59.400 55.000 0.00 0.00 0.00 4.85
1905 2396 3.323243 AGCAAATACACACACCGAGTAC 58.677 45.455 0.00 0.00 0.00 2.73
1916 2407 8.331022 CAGTACATGTCTGATTAGCAAATACAC 58.669 37.037 15.93 0.00 35.20 2.90
1976 2469 7.728083 TGATTCAGGGACCAAAATTAAAAGAGA 59.272 33.333 0.00 0.00 0.00 3.10
2032 2534 2.290641 ACCTAAACGCATCCCAATGACA 60.291 45.455 0.00 0.00 34.61 3.58
2033 2535 2.365582 ACCTAAACGCATCCCAATGAC 58.634 47.619 0.00 0.00 34.61 3.06
2035 2537 3.866883 AAACCTAAACGCATCCCAATG 57.133 42.857 0.00 0.00 35.87 2.82
2179 2713 6.823689 TGAAAGAAATACTGGAGTTAGATGGC 59.176 38.462 0.00 0.00 0.00 4.40
2203 2742 4.201753 GGTCGATGACAGATTGTGACAATG 60.202 45.833 16.52 6.45 34.40 2.82
2257 2796 8.855110 TCTTTTATTGCAGTAAAGAAACCATCA 58.145 29.630 13.30 0.00 35.58 3.07
2258 2797 9.691362 TTCTTTTATTGCAGTAAAGAAACCATC 57.309 29.630 20.82 0.00 42.01 3.51
2291 2830 5.334105 CGCGGACATCTTTAGGGAATAATTG 60.334 44.000 0.00 0.00 0.00 2.32
2312 2851 1.267682 CCATCATGTCACAATGTCGCG 60.268 52.381 0.00 0.00 0.00 5.87
2314 2853 3.063045 CAGTCCATCATGTCACAATGTCG 59.937 47.826 0.00 0.00 0.00 4.35
2334 2873 3.377485 CAGACAAGGGAATTCAGCATCAG 59.623 47.826 7.93 0.00 0.00 2.90
2359 2898 2.746277 GCCCCTGCAGGTAACACG 60.746 66.667 30.63 14.33 41.41 4.49
2364 2903 4.715130 ACCTCGCCCCTGCAGGTA 62.715 66.667 30.63 12.48 43.02 3.08
2414 2953 3.238108 TGAGCTCGTCTTTCTTGATCC 57.762 47.619 9.64 0.00 0.00 3.36
2539 3078 3.469863 TAAGCTAATGGCCGCCCGG 62.470 63.158 7.03 1.59 43.05 5.73
2558 3097 9.173021 ACATCACTAGCAGCTAGTATAATAGAG 57.827 37.037 30.71 17.65 44.37 2.43
2609 3148 1.153920 CGGGCGGTTTAAACATGGC 60.154 57.895 19.57 20.37 0.00 4.40
2661 3200 1.178276 TCACCACCCACAACAACAAC 58.822 50.000 0.00 0.00 0.00 3.32
2662 3201 1.753649 CATCACCACCCACAACAACAA 59.246 47.619 0.00 0.00 0.00 2.83
2663 3202 1.397672 CATCACCACCCACAACAACA 58.602 50.000 0.00 0.00 0.00 3.33
2672 3211 2.270874 CTACTGGGGCATCACCACCC 62.271 65.000 0.00 0.00 43.75 4.61
2674 3213 0.392998 CACTACTGGGGCATCACCAC 60.393 60.000 0.00 0.00 45.17 4.16
2684 3223 3.000819 TCACCGGCCACTACTGGG 61.001 66.667 0.00 0.00 40.73 4.45
2689 3228 1.982395 CCTCAGTCACCGGCCACTA 60.982 63.158 0.00 0.00 0.00 2.74
2690 3229 3.314331 CCTCAGTCACCGGCCACT 61.314 66.667 0.00 0.00 0.00 4.00
2799 3338 6.795593 GCAAACAGGAATTACTACGAAAAGAC 59.204 38.462 0.00 0.00 0.00 3.01
2830 3370 3.066621 AGCAAGAGAAATGCACGAAAACA 59.933 39.130 0.00 0.00 46.22 2.83
2880 3420 2.096713 CGGAGACTTGAGAGCGTTTTTG 60.097 50.000 0.00 0.00 0.00 2.44
2881 3421 2.135933 CGGAGACTTGAGAGCGTTTTT 58.864 47.619 0.00 0.00 0.00 1.94
2882 3422 1.068741 ACGGAGACTTGAGAGCGTTTT 59.931 47.619 0.00 0.00 0.00 2.43
2884 3424 0.674534 AACGGAGACTTGAGAGCGTT 59.325 50.000 0.00 0.00 0.00 4.84
2885 3425 0.039074 CAACGGAGACTTGAGAGCGT 60.039 55.000 0.00 0.00 0.00 5.07
2886 3426 0.039074 ACAACGGAGACTTGAGAGCG 60.039 55.000 0.00 0.00 0.00 5.03
2887 3427 1.704070 GACAACGGAGACTTGAGAGC 58.296 55.000 0.00 0.00 0.00 4.09
2888 3428 1.970447 CGACAACGGAGACTTGAGAG 58.030 55.000 0.00 0.00 35.72 3.20
2890 3430 0.039074 AGCGACAACGGAGACTTGAG 60.039 55.000 0.00 0.00 40.15 3.02
2891 3431 0.318699 CAGCGACAACGGAGACTTGA 60.319 55.000 0.00 0.00 40.15 3.02
2892 3432 0.318699 TCAGCGACAACGGAGACTTG 60.319 55.000 0.00 0.00 40.15 3.16
2893 3433 0.039074 CTCAGCGACAACGGAGACTT 60.039 55.000 0.00 0.00 40.15 3.01
2894 3434 1.581954 CTCAGCGACAACGGAGACT 59.418 57.895 0.00 0.00 40.15 3.24
2895 3435 1.444553 CCTCAGCGACAACGGAGAC 60.445 63.158 0.00 0.00 40.15 3.36
2896 3436 2.962569 CCTCAGCGACAACGGAGA 59.037 61.111 0.00 0.00 40.15 3.71
2897 3437 2.811317 GCCTCAGCGACAACGGAG 60.811 66.667 0.00 0.00 40.15 4.63
2928 3468 5.514274 TTGTCAAATTCTTCTGAACACCC 57.486 39.130 0.00 0.00 34.71 4.61
2944 3484 0.537143 AAGGCGAGGCACATTGTCAA 60.537 50.000 0.00 0.00 0.00 3.18
3013 3553 1.717728 CAAACGACACGCACGCTTC 60.718 57.895 0.00 0.00 0.00 3.86
3153 3728 3.365265 GGTGGCCGGTCAAGCAAG 61.365 66.667 12.16 0.00 0.00 4.01
3154 3729 3.884774 AGGTGGCCGGTCAAGCAA 61.885 61.111 12.16 0.00 0.00 3.91
3155 3730 4.641645 CAGGTGGCCGGTCAAGCA 62.642 66.667 12.16 0.00 0.00 3.91
3156 3731 4.329545 TCAGGTGGCCGGTCAAGC 62.330 66.667 12.16 4.74 0.00 4.01
3171 3746 2.852075 ACAGAAACCCGGCCCTCA 60.852 61.111 0.00 0.00 0.00 3.86
3191 3766 4.136796 TGGACAGCAATATACAATGAGCC 58.863 43.478 0.00 0.00 0.00 4.70
3211 3786 2.094659 GTGTCGTGTCCAGCGATGG 61.095 63.158 15.12 15.12 40.59 3.51
3236 3811 2.602933 CCAATCAACACTGCAGAACACG 60.603 50.000 23.35 4.64 0.00 4.49
3296 3884 2.046892 CTGGAGGGTGCCAAGACG 60.047 66.667 0.00 0.00 37.52 4.18
3300 3888 1.139498 TGGATTCTGGAGGGTGCCAA 61.139 55.000 0.00 0.00 37.52 4.52
3303 3891 0.466922 CCATGGATTCTGGAGGGTGC 60.467 60.000 5.56 0.00 35.70 5.01
3320 3908 3.149196 GACAAAGAACCTGCAGATTCCA 58.851 45.455 17.62 0.00 0.00 3.53
3324 3912 3.777106 TCTGACAAAGAACCTGCAGAT 57.223 42.857 17.39 2.96 29.54 2.90
3336 3924 0.532640 TGCTCGCTGCTTCTGACAAA 60.533 50.000 0.00 0.00 43.37 2.83
3347 3935 0.662619 TGAAACCAAACTGCTCGCTG 59.337 50.000 0.00 0.00 0.00 5.18
3348 3936 0.663153 GTGAAACCAAACTGCTCGCT 59.337 50.000 0.00 0.00 0.00 4.93
3357 3945 5.205056 ACCAACTTATCCAGTGAAACCAAA 58.795 37.500 0.00 0.00 37.80 3.28
3361 3949 5.310451 TGGTACCAACTTATCCAGTGAAAC 58.690 41.667 13.60 0.00 35.12 2.78
3362 3950 5.556915 CTGGTACCAACTTATCCAGTGAAA 58.443 41.667 17.11 0.00 40.25 2.69
3371 3960 3.947834 GAGCATTGCTGGTACCAACTTAT 59.052 43.478 17.51 6.84 39.88 1.73
3372 3961 3.009033 AGAGCATTGCTGGTACCAACTTA 59.991 43.478 17.51 4.66 39.88 2.24
3373 3962 2.162681 GAGCATTGCTGGTACCAACTT 58.837 47.619 17.51 0.71 39.88 2.66
3391 3980 2.064762 CTGCGGTGAAAGAAGACAGAG 58.935 52.381 0.00 0.00 0.00 3.35
3407 3996 0.318614 AAATGGCCGTTTGTTCTGCG 60.319 50.000 22.26 0.00 0.00 5.18
3441 4030 1.717937 GACGTCGACGGCTTAGCTA 59.282 57.895 37.89 0.00 45.57 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.