Multiple sequence alignment - TraesCS6D01G281900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G281900 chr6D 100.000 5240 0 0 1 5240 389593460 389588221 0.000000e+00 9677
1 TraesCS6D01G281900 chr6A 92.892 1829 79 23 329 2136 535985617 535983819 0.000000e+00 2610
2 TraesCS6D01G281900 chr6A 94.512 1312 57 7 3423 4721 535983827 535982518 0.000000e+00 2010
3 TraesCS6D01G281900 chr6A 95.385 325 13 2 3100 3422 503680095 503680419 2.800000e-142 516
4 TraesCS6D01G281900 chr6A 92.058 277 14 6 4967 5240 535982329 535982058 2.960000e-102 383
5 TraesCS6D01G281900 chr6A 90.708 226 13 3 4808 5031 535982518 535982299 1.430000e-75 294
6 TraesCS6D01G281900 chr6A 92.500 80 4 2 3 82 37856834 37856757 4.290000e-21 113
7 TraesCS6D01G281900 chr6B 94.102 1526 54 15 3423 4932 582866653 582865148 0.000000e+00 2287
8 TraesCS6D01G281900 chr6B 93.412 1518 70 15 329 1840 582868559 582867066 0.000000e+00 2222
9 TraesCS6D01G281900 chr6B 95.925 319 11 2 3105 3422 47104453 47104770 2.800000e-142 516
10 TraesCS6D01G281900 chr6B 97.659 299 5 2 1839 2136 582866942 582866645 3.620000e-141 512
11 TraesCS6D01G281900 chr6B 93.243 296 17 3 4945 5240 582829675 582829383 2.900000e-117 433
12 TraesCS6D01G281900 chr3D 95.670 1224 25 3 2137 3352 3039601 3040804 0.000000e+00 1941
13 TraesCS6D01G281900 chr3D 97.500 920 13 3 2511 3422 326553610 326554527 0.000000e+00 1563
14 TraesCS6D01G281900 chr2D 92.857 1316 77 7 2127 3432 33051606 33050298 0.000000e+00 1893
15 TraesCS6D01G281900 chr2D 91.803 488 32 2 2137 2623 602065503 602065983 0.000000e+00 673
16 TraesCS6D01G281900 chr2D 96.285 323 12 0 3100 3422 602066465 602066787 9.990000e-147 531
17 TraesCS6D01G281900 chr2D 79.545 264 31 9 2793 3056 588738030 588738270 3.250000e-37 167
18 TraesCS6D01G281900 chr7A 90.999 1011 81 5 2137 3139 488416470 488417478 0.000000e+00 1354
19 TraesCS6D01G281900 chr7A 90.109 1011 91 4 2137 3139 488030196 488031205 0.000000e+00 1304
20 TraesCS6D01G281900 chr7A 84.483 232 36 0 1311 1542 136350618 136350387 4.080000e-56 230
21 TraesCS6D01G281900 chr7A 90.643 171 16 0 1862 2032 136350083 136349913 1.470000e-55 228
22 TraesCS6D01G281900 chr7A 85.235 149 19 3 1311 1457 136393527 136393380 3.270000e-32 150
23 TraesCS6D01G281900 chr7A 88.372 86 7 3 3 87 676361511 676361428 3.340000e-17 100
24 TraesCS6D01G281900 chr3B 89.279 1082 81 11 2355 3427 519109526 519108471 0.000000e+00 1323
25 TraesCS6D01G281900 chr3B 89.642 531 28 11 2137 2666 471471586 471472090 0.000000e+00 651
26 TraesCS6D01G281900 chr3B 93.884 327 18 2 3097 3422 471472474 471472799 4.710000e-135 492
27 TraesCS6D01G281900 chr5D 91.867 959 53 4 2137 3095 562710835 562711768 0.000000e+00 1315
28 TraesCS6D01G281900 chr5D 95.370 324 14 1 3100 3422 483965463 483965786 1.010000e-141 514
29 TraesCS6D01G281900 chr5D 94.030 335 18 2 3089 3422 562713353 562713686 1.680000e-139 507
30 TraesCS6D01G281900 chr5D 89.157 83 7 2 3 85 462454722 462454802 9.280000e-18 102
31 TraesCS6D01G281900 chr2B 92.258 620 48 0 2137 2756 17897283 17896664 0.000000e+00 880
32 TraesCS6D01G281900 chr2B 91.290 620 54 0 2137 2756 150898323 150897704 0.000000e+00 846
33 TraesCS6D01G281900 chr2B 89.873 79 7 1 3 81 71316747 71316824 3.340000e-17 100
34 TraesCS6D01G281900 chr1B 91.493 529 38 3 2137 2665 38611187 38611708 0.000000e+00 721
35 TraesCS6D01G281900 chr1B 89.873 79 8 0 2 80 577610388 577610466 9.280000e-18 102
36 TraesCS6D01G281900 chr7D 84.120 233 37 0 1314 1546 136591883 136591651 5.280000e-55 226
37 TraesCS6D01G281900 chr7B 83.621 232 38 0 1311 1542 100031522 100031291 8.830000e-53 219
38 TraesCS6D01G281900 chr7B 89.286 84 6 3 10 91 77429517 77429435 9.280000e-18 102
39 TraesCS6D01G281900 chr7B 89.157 83 6 3 3 84 451351642 451351722 3.340000e-17 100
40 TraesCS6D01G281900 chr2A 88.983 118 7 3 2847 2959 677562159 677562275 1.970000e-29 141
41 TraesCS6D01G281900 chr3A 88.172 93 9 2 2 93 563387677 563387768 5.550000e-20 110
42 TraesCS6D01G281900 chr3A 88.235 85 7 3 3 87 602223792 602223711 1.200000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G281900 chr6D 389588221 389593460 5239 True 9677.000000 9677 100.000000 1 5240 1 chr6D.!!$R1 5239
1 TraesCS6D01G281900 chr6A 535982058 535985617 3559 True 1324.250000 2610 92.542500 329 5240 4 chr6A.!!$R2 4911
2 TraesCS6D01G281900 chr6B 582865148 582868559 3411 True 1673.666667 2287 95.057667 329 4932 3 chr6B.!!$R2 4603
3 TraesCS6D01G281900 chr3D 3039601 3040804 1203 False 1941.000000 1941 95.670000 2137 3352 1 chr3D.!!$F1 1215
4 TraesCS6D01G281900 chr3D 326553610 326554527 917 False 1563.000000 1563 97.500000 2511 3422 1 chr3D.!!$F2 911
5 TraesCS6D01G281900 chr2D 33050298 33051606 1308 True 1893.000000 1893 92.857000 2127 3432 1 chr2D.!!$R1 1305
6 TraesCS6D01G281900 chr2D 602065503 602066787 1284 False 602.000000 673 94.044000 2137 3422 2 chr2D.!!$F2 1285
7 TraesCS6D01G281900 chr7A 488416470 488417478 1008 False 1354.000000 1354 90.999000 2137 3139 1 chr7A.!!$F2 1002
8 TraesCS6D01G281900 chr7A 488030196 488031205 1009 False 1304.000000 1304 90.109000 2137 3139 1 chr7A.!!$F1 1002
9 TraesCS6D01G281900 chr7A 136349913 136350618 705 True 229.000000 230 87.563000 1311 2032 2 chr7A.!!$R3 721
10 TraesCS6D01G281900 chr3B 519108471 519109526 1055 True 1323.000000 1323 89.279000 2355 3427 1 chr3B.!!$R1 1072
11 TraesCS6D01G281900 chr3B 471471586 471472799 1213 False 571.500000 651 91.763000 2137 3422 2 chr3B.!!$F1 1285
12 TraesCS6D01G281900 chr5D 562710835 562713686 2851 False 911.000000 1315 92.948500 2137 3422 2 chr5D.!!$F3 1285
13 TraesCS6D01G281900 chr2B 17896664 17897283 619 True 880.000000 880 92.258000 2137 2756 1 chr2B.!!$R1 619
14 TraesCS6D01G281900 chr2B 150897704 150898323 619 True 846.000000 846 91.290000 2137 2756 1 chr2B.!!$R2 619
15 TraesCS6D01G281900 chr1B 38611187 38611708 521 False 721.000000 721 91.493000 2137 2665 1 chr1B.!!$F1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.034896 ACATCCAACCCACTCACGTC 59.965 55.000 0.00 0.00 0.00 4.34 F
233 234 0.101219 GCCCAATGAAGGAACATCGC 59.899 55.000 0.00 0.00 0.00 4.58 F
319 320 0.101399 CATCTAAGCCACGTCGAGCT 59.899 55.000 0.00 3.74 42.40 4.09 F
888 912 0.108138 ATTTCGACCCCTCTTGCTCG 60.108 55.000 0.00 0.00 0.00 5.03 F
891 915 0.609957 TCGACCCCTCTTGCTCGTTA 60.610 55.000 0.00 0.00 0.00 3.18 F
1048 1072 1.084370 CATCTCCGTCAAACCTCCGC 61.084 60.000 0.00 0.00 0.00 5.54 F
1920 2073 2.494870 GGCTGATCTGTTTGGCAAAGAT 59.505 45.455 13.94 13.37 33.36 2.40 F
2286 2440 4.002982 TCTTTTGAGCACGCTTATGACAT 58.997 39.130 0.00 0.00 0.00 3.06 F
3472 5601 4.413087 CAGTCTGCATTCAGCTTTGATTC 58.587 43.478 0.00 0.00 45.94 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1285 1.326576 CGAAACGAAACGTACCGCTA 58.673 50.000 9.06 0.0 39.99 4.26 R
1920 2073 1.731709 CGACGCCATTCATGAACTTGA 59.268 47.619 11.07 0.0 0.00 3.02 R
2103 2257 5.008415 CAGATGACAGAAAAGCAGAAACTGT 59.992 40.000 0.00 0.0 43.10 3.55 R
2965 3366 2.203998 CCTGACCACCCTGACCCT 60.204 66.667 0.00 0.0 0.00 4.34 R
3095 5088 1.563410 CTCCTTCCAGCTCCTTGGATT 59.437 52.381 0.00 0.0 46.22 3.01 R
3428 5557 5.670485 TGCTGATTTCATATCACGTTAGGT 58.330 37.500 0.00 0.0 0.00 3.08 R
3472 5601 0.236449 GTTACAAACTGGGAACGGCG 59.764 55.000 4.80 4.8 41.93 6.46 R
3665 5794 0.537143 ACACGGCTGATTGGAAAGCA 60.537 50.000 0.00 0.0 41.67 3.91 R
4899 7055 0.040067 CAAAAGACAAGACAGGCCGC 60.040 55.000 0.00 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.949352 TTTCTTTTTCTCTCTCTTGCATGT 57.051 33.333 0.00 0.00 0.00 3.21
27 28 6.949352 TTCTTTTTCTCTCTCTTGCATGTT 57.051 33.333 0.00 0.00 0.00 2.71
28 29 8.450578 TTTCTTTTTCTCTCTCTTGCATGTTA 57.549 30.769 0.00 0.00 0.00 2.41
29 30 8.627208 TTCTTTTTCTCTCTCTTGCATGTTAT 57.373 30.769 0.00 0.00 0.00 1.89
30 31 8.037382 TCTTTTTCTCTCTCTTGCATGTTATG 57.963 34.615 0.00 0.00 0.00 1.90
31 32 7.663081 TCTTTTTCTCTCTCTTGCATGTTATGT 59.337 33.333 0.00 0.00 0.00 2.29
32 33 7.750229 TTTTCTCTCTCTTGCATGTTATGTT 57.250 32.000 0.00 0.00 0.00 2.71
33 34 8.846943 TTTTCTCTCTCTTGCATGTTATGTTA 57.153 30.769 0.00 0.00 0.00 2.41
34 35 8.484641 TTTCTCTCTCTTGCATGTTATGTTAG 57.515 34.615 0.00 0.00 0.00 2.34
35 36 7.175347 TCTCTCTCTTGCATGTTATGTTAGT 57.825 36.000 0.00 0.00 0.00 2.24
36 37 7.615403 TCTCTCTCTTGCATGTTATGTTAGTT 58.385 34.615 0.00 0.00 0.00 2.24
37 38 7.547019 TCTCTCTCTTGCATGTTATGTTAGTTG 59.453 37.037 0.00 0.00 0.00 3.16
38 39 7.386059 TCTCTCTTGCATGTTATGTTAGTTGA 58.614 34.615 0.00 0.00 0.00 3.18
39 40 8.043113 TCTCTCTTGCATGTTATGTTAGTTGAT 58.957 33.333 0.00 0.00 0.00 2.57
40 41 8.565896 TCTCTTGCATGTTATGTTAGTTGATT 57.434 30.769 0.00 0.00 0.00 2.57
41 42 8.453320 TCTCTTGCATGTTATGTTAGTTGATTG 58.547 33.333 0.00 0.00 0.00 2.67
42 43 8.334263 TCTTGCATGTTATGTTAGTTGATTGA 57.666 30.769 0.00 0.00 0.00 2.57
43 44 8.791675 TCTTGCATGTTATGTTAGTTGATTGAA 58.208 29.630 0.00 0.00 0.00 2.69
44 45 9.409312 CTTGCATGTTATGTTAGTTGATTGAAA 57.591 29.630 0.00 0.00 0.00 2.69
45 46 9.926158 TTGCATGTTATGTTAGTTGATTGAAAT 57.074 25.926 0.00 0.00 0.00 2.17
46 47 9.926158 TGCATGTTATGTTAGTTGATTGAAATT 57.074 25.926 0.00 0.00 0.00 1.82
62 63 9.912634 TGATTGAAATTTGGTTAAATCTCAGTC 57.087 29.630 0.00 0.00 38.99 3.51
63 64 8.970691 ATTGAAATTTGGTTAAATCTCAGTCG 57.029 30.769 0.00 0.00 35.37 4.18
64 65 7.737972 TGAAATTTGGTTAAATCTCAGTCGA 57.262 32.000 0.00 0.00 35.50 4.20
65 66 7.581476 TGAAATTTGGTTAAATCTCAGTCGAC 58.419 34.615 7.70 7.70 35.50 4.20
66 67 7.444183 TGAAATTTGGTTAAATCTCAGTCGACT 59.556 33.333 13.58 13.58 35.50 4.18
67 68 6.727824 ATTTGGTTAAATCTCAGTCGACTG 57.272 37.500 34.76 34.76 37.33 3.51
68 69 6.934645 AATTTGGTTAAATCTCAGTCGACTGA 59.065 34.615 38.24 38.24 41.60 3.41
77 78 0.736053 CAGTCGACTGAGACCTAGCC 59.264 60.000 36.73 0.00 46.59 3.93
78 79 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
79 80 0.452585 GTCGACTGAGACCTAGCCAC 59.547 60.000 8.70 0.00 35.22 5.01
80 81 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
81 82 1.107114 CGACTGAGACCTAGCCACAT 58.893 55.000 0.00 0.00 0.00 3.21
82 83 1.066303 CGACTGAGACCTAGCCACATC 59.934 57.143 0.00 0.00 0.00 3.06
83 84 2.383855 GACTGAGACCTAGCCACATCT 58.616 52.381 0.00 0.00 0.00 2.90
84 85 2.763448 GACTGAGACCTAGCCACATCTT 59.237 50.000 0.00 0.00 0.00 2.40
85 86 3.177228 ACTGAGACCTAGCCACATCTTT 58.823 45.455 0.00 0.00 0.00 2.52
86 87 3.584848 ACTGAGACCTAGCCACATCTTTT 59.415 43.478 0.00 0.00 0.00 2.27
87 88 4.777896 ACTGAGACCTAGCCACATCTTTTA 59.222 41.667 0.00 0.00 0.00 1.52
88 89 5.426833 ACTGAGACCTAGCCACATCTTTTAT 59.573 40.000 0.00 0.00 0.00 1.40
89 90 6.611642 ACTGAGACCTAGCCACATCTTTTATA 59.388 38.462 0.00 0.00 0.00 0.98
90 91 7.125811 ACTGAGACCTAGCCACATCTTTTATAA 59.874 37.037 0.00 0.00 0.00 0.98
91 92 7.857456 TGAGACCTAGCCACATCTTTTATAAA 58.143 34.615 0.00 0.00 0.00 1.40
92 93 8.325787 TGAGACCTAGCCACATCTTTTATAAAA 58.674 33.333 10.16 10.16 0.00 1.52
93 94 9.174166 GAGACCTAGCCACATCTTTTATAAAAA 57.826 33.333 11.62 4.21 0.00 1.94
94 95 8.957466 AGACCTAGCCACATCTTTTATAAAAAC 58.043 33.333 11.62 0.00 0.00 2.43
95 96 8.644374 ACCTAGCCACATCTTTTATAAAAACA 57.356 30.769 11.62 2.49 0.00 2.83
96 97 9.255029 ACCTAGCCACATCTTTTATAAAAACAT 57.745 29.630 11.62 4.57 0.00 2.71
124 125 7.867305 TTTAGAAACACATTACAACACCTCA 57.133 32.000 0.00 0.00 0.00 3.86
125 126 5.751243 AGAAACACATTACAACACCTCAC 57.249 39.130 0.00 0.00 0.00 3.51
126 127 4.578928 AGAAACACATTACAACACCTCACC 59.421 41.667 0.00 0.00 0.00 4.02
127 128 3.857157 ACACATTACAACACCTCACCT 57.143 42.857 0.00 0.00 0.00 4.00
128 129 4.967084 ACACATTACAACACCTCACCTA 57.033 40.909 0.00 0.00 0.00 3.08
129 130 4.638304 ACACATTACAACACCTCACCTAC 58.362 43.478 0.00 0.00 0.00 3.18
130 131 4.101898 ACACATTACAACACCTCACCTACA 59.898 41.667 0.00 0.00 0.00 2.74
131 132 4.451096 CACATTACAACACCTCACCTACAC 59.549 45.833 0.00 0.00 0.00 2.90
132 133 4.101898 ACATTACAACACCTCACCTACACA 59.898 41.667 0.00 0.00 0.00 3.72
133 134 4.967084 TTACAACACCTCACCTACACAT 57.033 40.909 0.00 0.00 0.00 3.21
134 135 3.126001 ACAACACCTCACCTACACATG 57.874 47.619 0.00 0.00 0.00 3.21
135 136 2.703536 ACAACACCTCACCTACACATGA 59.296 45.455 0.00 0.00 0.00 3.07
136 137 3.244215 ACAACACCTCACCTACACATGAG 60.244 47.826 0.00 0.00 41.75 2.90
137 138 1.276421 ACACCTCACCTACACATGAGC 59.724 52.381 0.00 0.00 40.92 4.26
138 139 1.276138 CACCTCACCTACACATGAGCA 59.724 52.381 0.00 0.00 40.92 4.26
139 140 1.276421 ACCTCACCTACACATGAGCAC 59.724 52.381 0.00 0.00 40.92 4.40
140 141 1.276138 CCTCACCTACACATGAGCACA 59.724 52.381 0.00 0.00 40.92 4.57
141 142 2.093288 CCTCACCTACACATGAGCACAT 60.093 50.000 0.00 0.00 40.92 3.21
142 143 3.193263 CTCACCTACACATGAGCACATC 58.807 50.000 0.00 0.00 36.22 3.06
143 144 2.093500 TCACCTACACATGAGCACATCC 60.093 50.000 0.00 0.00 34.15 3.51
144 145 1.908619 ACCTACACATGAGCACATCCA 59.091 47.619 0.00 0.00 34.15 3.41
145 146 2.305635 ACCTACACATGAGCACATCCAA 59.694 45.455 0.00 0.00 34.15 3.53
146 147 2.679837 CCTACACATGAGCACATCCAAC 59.320 50.000 0.00 0.00 34.15 3.77
147 148 1.538047 ACACATGAGCACATCCAACC 58.462 50.000 0.00 0.00 34.15 3.77
148 149 0.813184 CACATGAGCACATCCAACCC 59.187 55.000 0.00 0.00 34.15 4.11
149 150 0.405198 ACATGAGCACATCCAACCCA 59.595 50.000 0.00 0.00 34.15 4.51
150 151 0.813184 CATGAGCACATCCAACCCAC 59.187 55.000 0.00 0.00 34.15 4.61
151 152 0.700564 ATGAGCACATCCAACCCACT 59.299 50.000 0.00 0.00 29.98 4.00
152 153 0.036732 TGAGCACATCCAACCCACTC 59.963 55.000 0.00 0.00 0.00 3.51
153 154 0.036732 GAGCACATCCAACCCACTCA 59.963 55.000 0.00 0.00 0.00 3.41
154 155 0.250901 AGCACATCCAACCCACTCAC 60.251 55.000 0.00 0.00 0.00 3.51
155 156 1.577328 GCACATCCAACCCACTCACG 61.577 60.000 0.00 0.00 0.00 4.35
156 157 0.250295 CACATCCAACCCACTCACGT 60.250 55.000 0.00 0.00 0.00 4.49
157 158 0.034896 ACATCCAACCCACTCACGTC 59.965 55.000 0.00 0.00 0.00 4.34
158 159 0.321671 CATCCAACCCACTCACGTCT 59.678 55.000 0.00 0.00 0.00 4.18
159 160 1.548719 CATCCAACCCACTCACGTCTA 59.451 52.381 0.00 0.00 0.00 2.59
160 161 1.933021 TCCAACCCACTCACGTCTAT 58.067 50.000 0.00 0.00 0.00 1.98
161 162 1.548719 TCCAACCCACTCACGTCTATG 59.451 52.381 0.00 0.00 0.00 2.23
162 163 1.548719 CCAACCCACTCACGTCTATGA 59.451 52.381 0.00 0.00 0.00 2.15
163 164 2.028476 CCAACCCACTCACGTCTATGAA 60.028 50.000 0.00 0.00 0.00 2.57
164 165 3.369471 CCAACCCACTCACGTCTATGAAT 60.369 47.826 0.00 0.00 0.00 2.57
165 166 3.526931 ACCCACTCACGTCTATGAATG 57.473 47.619 0.00 0.00 0.00 2.67
166 167 2.205074 CCCACTCACGTCTATGAATGC 58.795 52.381 0.00 0.00 0.00 3.56
167 168 2.418609 CCCACTCACGTCTATGAATGCA 60.419 50.000 0.00 0.00 0.00 3.96
168 169 2.604914 CCACTCACGTCTATGAATGCAC 59.395 50.000 0.00 0.00 0.00 4.57
169 170 3.253230 CACTCACGTCTATGAATGCACA 58.747 45.455 0.00 0.00 0.00 4.57
170 171 3.867493 CACTCACGTCTATGAATGCACAT 59.133 43.478 0.00 0.00 0.00 3.21
171 172 5.043248 CACTCACGTCTATGAATGCACATA 58.957 41.667 0.00 0.00 0.00 2.29
172 173 5.043903 ACTCACGTCTATGAATGCACATAC 58.956 41.667 0.00 0.00 0.00 2.39
173 174 5.004922 TCACGTCTATGAATGCACATACA 57.995 39.130 0.00 0.00 0.00 2.29
174 175 5.600696 TCACGTCTATGAATGCACATACAT 58.399 37.500 0.00 0.00 0.00 2.29
175 176 5.691754 TCACGTCTATGAATGCACATACATC 59.308 40.000 0.00 0.00 0.00 3.06
176 177 4.991056 ACGTCTATGAATGCACATACATCC 59.009 41.667 0.00 0.00 0.00 3.51
177 178 4.990426 CGTCTATGAATGCACATACATCCA 59.010 41.667 0.00 0.00 0.00 3.41
178 179 5.466393 CGTCTATGAATGCACATACATCCAA 59.534 40.000 0.00 0.00 0.00 3.53
179 180 6.564686 CGTCTATGAATGCACATACATCCAAC 60.565 42.308 0.00 0.00 0.00 3.77
180 181 4.924305 ATGAATGCACATACATCCAACC 57.076 40.909 0.00 0.00 0.00 3.77
181 182 3.023119 TGAATGCACATACATCCAACCC 58.977 45.455 0.00 0.00 0.00 4.11
182 183 3.290710 GAATGCACATACATCCAACCCT 58.709 45.455 0.00 0.00 0.00 4.34
183 184 2.418368 TGCACATACATCCAACCCTC 57.582 50.000 0.00 0.00 0.00 4.30
184 185 1.632920 TGCACATACATCCAACCCTCA 59.367 47.619 0.00 0.00 0.00 3.86
185 186 2.241941 TGCACATACATCCAACCCTCAT 59.758 45.455 0.00 0.00 0.00 2.90
186 187 2.620115 GCACATACATCCAACCCTCATG 59.380 50.000 0.00 0.00 0.00 3.07
187 188 3.685265 GCACATACATCCAACCCTCATGA 60.685 47.826 0.00 0.00 0.00 3.07
188 189 4.132336 CACATACATCCAACCCTCATGAG 58.868 47.826 16.24 16.24 0.00 2.90
189 190 3.144506 CATACATCCAACCCTCATGAGC 58.855 50.000 17.76 0.00 0.00 4.26
190 191 0.994247 ACATCCAACCCTCATGAGCA 59.006 50.000 17.76 0.00 0.00 4.26
191 192 1.340405 ACATCCAACCCTCATGAGCAC 60.340 52.381 17.76 0.00 0.00 4.40
192 193 0.994247 ATCCAACCCTCATGAGCACA 59.006 50.000 17.76 0.00 0.00 4.57
193 194 0.994247 TCCAACCCTCATGAGCACAT 59.006 50.000 17.76 0.05 37.19 3.21
194 195 1.065199 TCCAACCCTCATGAGCACATC 60.065 52.381 17.76 0.00 34.15 3.06
195 196 1.386533 CAACCCTCATGAGCACATCC 58.613 55.000 17.76 0.00 34.15 3.51
196 197 0.107508 AACCCTCATGAGCACATCCG 60.108 55.000 17.76 1.57 34.15 4.18
197 198 0.977627 ACCCTCATGAGCACATCCGA 60.978 55.000 17.76 0.00 34.15 4.55
198 199 0.178767 CCCTCATGAGCACATCCGAA 59.821 55.000 17.76 0.00 34.15 4.30
199 200 1.407299 CCCTCATGAGCACATCCGAAA 60.407 52.381 17.76 0.00 34.15 3.46
200 201 1.938577 CCTCATGAGCACATCCGAAAG 59.061 52.381 17.76 0.00 34.15 2.62
201 202 2.625737 CTCATGAGCACATCCGAAAGT 58.374 47.619 10.38 0.00 34.15 2.66
202 203 3.005554 CTCATGAGCACATCCGAAAGTT 58.994 45.455 10.38 0.00 34.15 2.66
203 204 4.183865 CTCATGAGCACATCCGAAAGTTA 58.816 43.478 10.38 0.00 34.15 2.24
204 205 4.769688 TCATGAGCACATCCGAAAGTTAT 58.230 39.130 0.00 0.00 34.15 1.89
205 206 4.811024 TCATGAGCACATCCGAAAGTTATC 59.189 41.667 0.00 0.00 34.15 1.75
206 207 4.200838 TGAGCACATCCGAAAGTTATCA 57.799 40.909 0.00 0.00 0.00 2.15
207 208 3.932710 TGAGCACATCCGAAAGTTATCAC 59.067 43.478 0.00 0.00 0.00 3.06
208 209 4.184629 GAGCACATCCGAAAGTTATCACT 58.815 43.478 0.00 0.00 33.11 3.41
209 210 4.579869 AGCACATCCGAAAGTTATCACTT 58.420 39.130 0.00 0.00 45.89 3.16
210 211 4.393062 AGCACATCCGAAAGTTATCACTTG 59.607 41.667 0.00 0.00 42.89 3.16
211 212 4.651994 CACATCCGAAAGTTATCACTTGC 58.348 43.478 0.00 0.00 42.89 4.01
212 213 4.154015 CACATCCGAAAGTTATCACTTGCA 59.846 41.667 0.00 0.00 42.89 4.08
213 214 4.943705 ACATCCGAAAGTTATCACTTGCAT 59.056 37.500 0.00 0.00 42.89 3.96
214 215 4.944962 TCCGAAAGTTATCACTTGCATG 57.055 40.909 0.00 0.00 42.89 4.06
215 216 3.126858 TCCGAAAGTTATCACTTGCATGC 59.873 43.478 11.82 11.82 42.89 4.06
216 217 3.429085 CGAAAGTTATCACTTGCATGCC 58.571 45.455 16.68 0.00 42.89 4.40
217 218 3.731867 CGAAAGTTATCACTTGCATGCCC 60.732 47.826 16.68 0.00 42.89 5.36
218 219 2.512692 AGTTATCACTTGCATGCCCA 57.487 45.000 16.68 0.10 0.00 5.36
219 220 2.806434 AGTTATCACTTGCATGCCCAA 58.194 42.857 16.68 2.34 0.00 4.12
220 221 3.368248 AGTTATCACTTGCATGCCCAAT 58.632 40.909 16.68 4.42 0.00 3.16
221 222 3.131577 AGTTATCACTTGCATGCCCAATG 59.868 43.478 16.68 8.55 39.49 2.82
222 223 1.855295 ATCACTTGCATGCCCAATGA 58.145 45.000 16.68 13.75 38.72 2.57
223 224 1.630223 TCACTTGCATGCCCAATGAA 58.370 45.000 16.68 0.00 38.72 2.57
224 225 1.546923 TCACTTGCATGCCCAATGAAG 59.453 47.619 16.68 13.12 38.72 3.02
225 226 0.899720 ACTTGCATGCCCAATGAAGG 59.100 50.000 16.68 0.00 38.72 3.46
226 227 1.187974 CTTGCATGCCCAATGAAGGA 58.812 50.000 16.68 0.00 38.72 3.36
227 228 1.551430 CTTGCATGCCCAATGAAGGAA 59.449 47.619 16.68 0.00 38.72 3.36
228 229 0.896923 TGCATGCCCAATGAAGGAAC 59.103 50.000 16.68 0.00 38.72 3.62
229 230 0.896923 GCATGCCCAATGAAGGAACA 59.103 50.000 6.36 0.00 38.72 3.18
230 231 1.483415 GCATGCCCAATGAAGGAACAT 59.517 47.619 6.36 0.00 38.72 2.71
231 232 2.482490 GCATGCCCAATGAAGGAACATC 60.482 50.000 6.36 0.00 38.72 3.06
232 233 1.462616 TGCCCAATGAAGGAACATCG 58.537 50.000 0.00 0.00 0.00 3.84
233 234 0.101219 GCCCAATGAAGGAACATCGC 59.899 55.000 0.00 0.00 0.00 4.58
234 235 1.755179 CCCAATGAAGGAACATCGCT 58.245 50.000 0.00 0.00 0.00 4.93
235 236 1.402968 CCCAATGAAGGAACATCGCTG 59.597 52.381 0.00 0.00 0.00 5.18
236 237 2.358957 CCAATGAAGGAACATCGCTGA 58.641 47.619 0.00 0.00 0.00 4.26
237 238 2.749076 CCAATGAAGGAACATCGCTGAA 59.251 45.455 0.00 0.00 0.00 3.02
238 239 3.191162 CCAATGAAGGAACATCGCTGAAA 59.809 43.478 0.00 0.00 0.00 2.69
239 240 4.321156 CCAATGAAGGAACATCGCTGAAAA 60.321 41.667 0.00 0.00 0.00 2.29
240 241 5.221880 CAATGAAGGAACATCGCTGAAAAA 58.778 37.500 0.00 0.00 0.00 1.94
241 242 4.223320 TGAAGGAACATCGCTGAAAAAC 57.777 40.909 0.00 0.00 0.00 2.43
242 243 3.004315 TGAAGGAACATCGCTGAAAAACC 59.996 43.478 0.00 0.00 0.00 3.27
243 244 2.863809 AGGAACATCGCTGAAAAACCT 58.136 42.857 0.00 0.00 0.00 3.50
244 245 4.015872 AGGAACATCGCTGAAAAACCTA 57.984 40.909 0.00 0.00 0.00 3.08
245 246 4.394729 AGGAACATCGCTGAAAAACCTAA 58.605 39.130 0.00 0.00 0.00 2.69
246 247 4.825085 AGGAACATCGCTGAAAAACCTAAA 59.175 37.500 0.00 0.00 0.00 1.85
247 248 5.300792 AGGAACATCGCTGAAAAACCTAAAA 59.699 36.000 0.00 0.00 0.00 1.52
248 249 6.015434 AGGAACATCGCTGAAAAACCTAAAAT 60.015 34.615 0.00 0.00 0.00 1.82
249 250 6.645003 GGAACATCGCTGAAAAACCTAAAATT 59.355 34.615 0.00 0.00 0.00 1.82
250 251 7.810759 GGAACATCGCTGAAAAACCTAAAATTA 59.189 33.333 0.00 0.00 0.00 1.40
251 252 9.187455 GAACATCGCTGAAAAACCTAAAATTAA 57.813 29.630 0.00 0.00 0.00 1.40
252 253 9.705290 AACATCGCTGAAAAACCTAAAATTAAT 57.295 25.926 0.00 0.00 0.00 1.40
256 257 9.834628 TCGCTGAAAAACCTAAAATTAATACAG 57.165 29.630 0.00 0.00 0.00 2.74
257 258 9.834628 CGCTGAAAAACCTAAAATTAATACAGA 57.165 29.630 0.00 0.00 0.00 3.41
285 286 7.730364 ATACAAGCCTATAATTTGAACCTCG 57.270 36.000 0.00 0.00 0.00 4.63
286 287 4.335594 ACAAGCCTATAATTTGAACCTCGC 59.664 41.667 0.00 0.00 0.00 5.03
287 288 4.150897 AGCCTATAATTTGAACCTCGCA 57.849 40.909 0.00 0.00 0.00 5.10
288 289 4.523083 AGCCTATAATTTGAACCTCGCAA 58.477 39.130 0.00 0.00 0.00 4.85
289 290 4.576463 AGCCTATAATTTGAACCTCGCAAG 59.424 41.667 0.00 0.00 0.00 4.01
291 292 5.123227 CCTATAATTTGAACCTCGCAAGGA 58.877 41.667 0.00 0.00 46.67 3.36
292 293 5.588648 CCTATAATTTGAACCTCGCAAGGAA 59.411 40.000 0.00 0.00 46.67 3.36
293 294 3.923017 AATTTGAACCTCGCAAGGAAG 57.077 42.857 0.00 0.00 46.67 3.46
294 295 0.951558 TTTGAACCTCGCAAGGAAGC 59.048 50.000 0.00 0.00 46.67 3.86
295 296 0.108585 TTGAACCTCGCAAGGAAGCT 59.891 50.000 0.00 0.00 46.67 3.74
296 297 0.973632 TGAACCTCGCAAGGAAGCTA 59.026 50.000 0.00 0.00 46.67 3.32
297 298 1.346395 TGAACCTCGCAAGGAAGCTAA 59.654 47.619 0.00 0.00 46.67 3.09
298 299 2.224426 TGAACCTCGCAAGGAAGCTAAA 60.224 45.455 0.00 0.00 46.67 1.85
299 300 2.561478 ACCTCGCAAGGAAGCTAAAA 57.439 45.000 0.00 0.00 46.67 1.52
300 301 2.152016 ACCTCGCAAGGAAGCTAAAAC 58.848 47.619 0.00 0.00 46.67 2.43
301 302 2.151202 CCTCGCAAGGAAGCTAAAACA 58.849 47.619 0.00 0.00 46.67 2.83
302 303 2.749621 CCTCGCAAGGAAGCTAAAACAT 59.250 45.455 0.00 0.00 46.67 2.71
303 304 3.181506 CCTCGCAAGGAAGCTAAAACATC 60.182 47.826 0.00 0.00 46.67 3.06
304 305 3.674997 TCGCAAGGAAGCTAAAACATCT 58.325 40.909 0.00 0.00 38.47 2.90
305 306 4.827692 TCGCAAGGAAGCTAAAACATCTA 58.172 39.130 0.00 0.00 38.47 1.98
306 307 5.242434 TCGCAAGGAAGCTAAAACATCTAA 58.758 37.500 0.00 0.00 38.47 2.10
307 308 5.351465 TCGCAAGGAAGCTAAAACATCTAAG 59.649 40.000 0.00 0.00 38.47 2.18
308 309 5.335935 GCAAGGAAGCTAAAACATCTAAGC 58.664 41.667 0.00 0.00 35.16 3.09
309 310 5.677344 GCAAGGAAGCTAAAACATCTAAGCC 60.677 44.000 0.00 0.00 35.54 4.35
310 311 5.179452 AGGAAGCTAAAACATCTAAGCCA 57.821 39.130 0.00 0.00 35.54 4.75
311 312 4.944317 AGGAAGCTAAAACATCTAAGCCAC 59.056 41.667 0.00 0.00 35.54 5.01
312 313 4.201822 GGAAGCTAAAACATCTAAGCCACG 60.202 45.833 0.00 0.00 35.54 4.94
313 314 3.939066 AGCTAAAACATCTAAGCCACGT 58.061 40.909 0.00 0.00 35.54 4.49
314 315 3.933332 AGCTAAAACATCTAAGCCACGTC 59.067 43.478 0.00 0.00 35.54 4.34
315 316 3.241995 GCTAAAACATCTAAGCCACGTCG 60.242 47.826 0.00 0.00 0.00 5.12
316 317 2.736144 AAACATCTAAGCCACGTCGA 57.264 45.000 0.00 0.00 0.00 4.20
317 318 2.279582 AACATCTAAGCCACGTCGAG 57.720 50.000 0.00 0.00 0.00 4.04
318 319 0.179134 ACATCTAAGCCACGTCGAGC 60.179 55.000 0.00 0.99 0.00 5.03
319 320 0.101399 CATCTAAGCCACGTCGAGCT 59.899 55.000 0.00 3.74 42.40 4.09
320 321 0.382515 ATCTAAGCCACGTCGAGCTC 59.617 55.000 13.44 2.73 38.74 4.09
321 322 1.583967 CTAAGCCACGTCGAGCTCG 60.584 63.158 30.03 30.03 38.74 5.03
322 323 3.678717 TAAGCCACGTCGAGCTCGC 62.679 63.158 30.97 23.13 38.74 5.03
325 326 3.175240 CCACGTCGAGCTCGCAAG 61.175 66.667 30.97 23.86 39.60 4.01
326 327 2.429236 CACGTCGAGCTCGCAAGT 60.429 61.111 30.97 24.49 39.60 3.16
327 328 2.016704 CACGTCGAGCTCGCAAGTT 61.017 57.895 30.97 10.25 39.60 2.66
328 329 1.299926 ACGTCGAGCTCGCAAGTTT 60.300 52.632 30.97 8.80 39.60 2.66
329 330 1.276145 ACGTCGAGCTCGCAAGTTTC 61.276 55.000 30.97 12.80 39.60 2.78
330 331 1.412606 GTCGAGCTCGCAAGTTTCG 59.587 57.895 30.97 5.49 39.60 3.46
331 332 2.094724 CGAGCTCGCAAGTTTCGC 59.905 61.111 25.07 0.00 39.48 4.70
332 333 2.657757 CGAGCTCGCAAGTTTCGCA 61.658 57.895 25.07 0.00 39.48 5.10
333 334 1.790387 GAGCTCGCAAGTTTCGCAT 59.210 52.632 0.00 0.00 39.48 4.73
334 335 0.519999 GAGCTCGCAAGTTTCGCATG 60.520 55.000 0.00 0.00 39.48 4.06
335 336 0.950555 AGCTCGCAAGTTTCGCATGA 60.951 50.000 0.00 0.00 39.48 3.07
336 337 0.110238 GCTCGCAAGTTTCGCATGAA 60.110 50.000 0.00 0.00 39.48 2.57
337 338 1.466360 GCTCGCAAGTTTCGCATGAAT 60.466 47.619 0.00 0.00 33.20 2.57
351 352 5.631992 TCGCATGAATTTTACGCACATTTA 58.368 33.333 0.00 0.00 0.00 1.40
379 381 1.010419 CACAAGCGGCTCAAATTGCC 61.010 55.000 1.45 0.00 46.42 4.52
392 394 2.109425 AATTGCCAGAAGACCGGTAC 57.891 50.000 7.34 1.84 0.00 3.34
393 395 0.252197 ATTGCCAGAAGACCGGTACC 59.748 55.000 7.34 0.16 0.00 3.34
394 396 1.122632 TTGCCAGAAGACCGGTACCA 61.123 55.000 7.34 0.00 0.00 3.25
395 397 1.122632 TGCCAGAAGACCGGTACCAA 61.123 55.000 7.34 0.00 0.00 3.67
396 398 0.672711 GCCAGAAGACCGGTACCAAC 60.673 60.000 7.34 0.00 0.00 3.77
415 417 1.072332 CCAACCCATGTCACGGTCA 59.928 57.895 0.00 0.00 0.00 4.02
424 426 0.392706 TGTCACGGTCATCTGCTTGT 59.607 50.000 0.00 0.00 0.00 3.16
425 427 0.792640 GTCACGGTCATCTGCTTGTG 59.207 55.000 0.00 0.00 0.00 3.33
426 428 0.950555 TCACGGTCATCTGCTTGTGC 60.951 55.000 0.00 0.00 40.20 4.57
427 429 0.952497 CACGGTCATCTGCTTGTGCT 60.952 55.000 0.00 0.00 40.48 4.40
428 430 0.250467 ACGGTCATCTGCTTGTGCTT 60.250 50.000 0.00 0.00 40.48 3.91
429 431 0.167470 CGGTCATCTGCTTGTGCTTG 59.833 55.000 0.00 0.00 40.48 4.01
438 440 2.041153 CTTGTGCTTGGACCAACCC 58.959 57.895 1.69 0.00 38.00 4.11
521 523 4.605967 CGCAACCACACACGCACC 62.606 66.667 0.00 0.00 0.00 5.01
522 524 3.209097 GCAACCACACACGCACCT 61.209 61.111 0.00 0.00 0.00 4.00
654 668 1.361993 CAGATCTCGCCGAGGAAGG 59.638 63.158 15.08 0.00 0.00 3.46
828 848 1.653094 TTCCGCGTGGATGCAATTCC 61.653 55.000 20.33 0.00 45.91 3.01
864 888 2.480555 GGAACGCAATGGAGCACG 59.519 61.111 0.00 0.00 0.00 5.34
865 889 2.032634 GGAACGCAATGGAGCACGA 61.033 57.895 0.00 0.00 0.00 4.35
866 890 1.369091 GGAACGCAATGGAGCACGAT 61.369 55.000 0.00 0.00 0.00 3.73
867 891 0.447801 GAACGCAATGGAGCACGATT 59.552 50.000 0.00 0.00 0.00 3.34
875 899 2.378445 TGGAGCACGATTGATTTCGA 57.622 45.000 0.31 0.00 41.62 3.71
876 900 1.999735 TGGAGCACGATTGATTTCGAC 59.000 47.619 0.31 0.00 41.62 4.20
881 905 1.933853 CACGATTGATTTCGACCCCTC 59.066 52.381 0.31 0.00 41.62 4.30
888 912 0.108138 ATTTCGACCCCTCTTGCTCG 60.108 55.000 0.00 0.00 0.00 5.03
890 914 1.469335 TTCGACCCCTCTTGCTCGTT 61.469 55.000 0.00 0.00 0.00 3.85
891 915 0.609957 TCGACCCCTCTTGCTCGTTA 60.610 55.000 0.00 0.00 0.00 3.18
905 929 6.650807 TCTTGCTCGTTATTGATCTCTTTTGT 59.349 34.615 0.00 0.00 0.00 2.83
912 936 6.303970 CGTTATTGATCTCTTTTGTGTGCTTG 59.696 38.462 0.00 0.00 0.00 4.01
926 950 4.202000 TGTGTGCTTGTTTTGATTCGATGT 60.202 37.500 0.00 0.00 0.00 3.06
930 954 3.670055 GCTTGTTTTGATTCGATGTGTGG 59.330 43.478 0.00 0.00 0.00 4.17
933 957 3.252215 TGTTTTGATTCGATGTGTGGACC 59.748 43.478 0.00 0.00 0.00 4.46
1046 1070 1.740718 GCTCATCTCCGTCAAACCTCC 60.741 57.143 0.00 0.00 0.00 4.30
1048 1072 1.084370 CATCTCCGTCAAACCTCCGC 61.084 60.000 0.00 0.00 0.00 5.54
1217 1241 3.365265 CCCCGAAAGTGGCAGCAC 61.365 66.667 0.00 0.00 0.00 4.40
1261 1285 8.135382 TCTTCTTAAGTTCTGTTAGGCTATGT 57.865 34.615 1.63 0.00 0.00 2.29
1598 1623 4.100189 AGTGGAAGCATACTGTATCTGGAC 59.900 45.833 0.00 0.00 0.00 4.02
1800 1828 7.458409 AGGGTTCGCTAATATCTTATAACGA 57.542 36.000 0.00 0.00 0.00 3.85
1920 2073 2.494870 GGCTGATCTGTTTGGCAAAGAT 59.505 45.455 13.94 13.37 33.36 2.40
2103 2257 6.544928 TGTCTCTTGGCTCTGAATACATAA 57.455 37.500 0.00 0.00 0.00 1.90
2286 2440 4.002982 TCTTTTGAGCACGCTTATGACAT 58.997 39.130 0.00 0.00 0.00 3.06
3079 3489 4.981647 AGATAGAGAGAGAAGGAGAAGGGA 59.018 45.833 0.00 0.00 0.00 4.20
3427 5556 7.270579 GTGGTTTTCTGCAATTTACTCGTTATC 59.729 37.037 0.00 0.00 0.00 1.75
3428 5557 7.041030 TGGTTTTCTGCAATTTACTCGTTATCA 60.041 33.333 0.00 0.00 0.00 2.15
3430 5559 6.417191 TTCTGCAATTTACTCGTTATCACC 57.583 37.500 0.00 0.00 0.00 4.02
3472 5601 4.413087 CAGTCTGCATTCAGCTTTGATTC 58.587 43.478 0.00 0.00 45.94 2.52
3509 5638 9.916397 GTTTGTAACATATTTTAGAGGATCGTG 57.084 33.333 0.00 0.00 42.67 4.35
3542 5671 9.686683 ATATATTTTGACCTGCAGATTATACCC 57.313 33.333 17.39 0.00 0.00 3.69
3681 5810 2.564771 TCTATGCTTTCCAATCAGCCG 58.435 47.619 0.00 0.00 34.91 5.52
3801 5935 1.411074 GGGAAATTTATCAGGCGGGGT 60.411 52.381 0.00 0.00 0.00 4.95
3831 5965 2.348998 CCTTCTGAGGCAGGCGTT 59.651 61.111 0.00 0.00 35.94 4.84
3850 5984 6.259387 AGGCGTTTATGCTTATACAAAGGTAC 59.741 38.462 2.12 0.00 34.52 3.34
3994 6132 2.158449 CAGAAGCTAAAGCAACTCGGTG 59.842 50.000 4.54 0.00 45.16 4.94
4209 6355 1.537202 CTGCAGAGTTTGGCCAAGTAC 59.463 52.381 19.48 15.22 0.00 2.73
4259 6405 3.688694 AGACGGTAACCATTGTAAGCA 57.311 42.857 0.00 0.00 0.00 3.91
4325 6474 8.824159 TTATTCTGAAGATACTGCTCTAATGC 57.176 34.615 0.00 0.00 0.00 3.56
4380 6533 2.324014 TTTGCAGCGGTGGTCTGAGT 62.324 55.000 17.54 0.00 33.54 3.41
4382 6535 2.126307 CAGCGGTGGTCTGAGTCG 60.126 66.667 6.74 0.00 33.54 4.18
4445 6598 7.110155 AGTGGGTTAACTTCACATACTATTGG 58.890 38.462 23.83 0.00 34.17 3.16
4499 6652 2.368548 TGCAGTTTGTAGCTTCTCCTCA 59.631 45.455 0.00 0.00 0.00 3.86
4501 6654 3.556004 GCAGTTTGTAGCTTCTCCTCAGT 60.556 47.826 0.00 0.00 0.00 3.41
4505 6658 3.963428 TGTAGCTTCTCCTCAGTTTCC 57.037 47.619 0.00 0.00 0.00 3.13
4655 6808 0.164647 CGACTTTACGACGACTCGGT 59.835 55.000 0.00 0.00 44.80 4.69
4712 6865 5.344743 AATGATACCGTGTGATCAGAACT 57.655 39.130 0.00 0.00 35.60 3.01
4743 6896 4.223700 TCTTGCCAAGTAGATGATCACTGT 59.776 41.667 4.04 0.00 0.00 3.55
4775 6928 6.449635 TTTGAGTGTTTAATGCTCAACTGT 57.550 33.333 13.10 0.00 45.37 3.55
4776 6929 7.561021 TTTGAGTGTTTAATGCTCAACTGTA 57.439 32.000 13.10 1.67 45.37 2.74
4780 6933 7.095229 TGAGTGTTTAATGCTCAACTGTACATC 60.095 37.037 0.00 0.00 36.46 3.06
4879 7032 4.615815 GCGCCGAGCCCAGATGAT 62.616 66.667 0.00 0.00 40.81 2.45
4885 7038 1.834996 GAGCCCAGATGATGCCTGA 59.165 57.895 0.00 0.00 33.65 3.86
4933 7090 1.047596 TTTTGGCCCAGCTTCAGCAA 61.048 50.000 0.00 0.00 45.16 3.91
4961 7118 2.297880 GGCCGGGTTACAGAAAACAAAT 59.702 45.455 2.18 0.00 0.00 2.32
4965 7122 5.336134 GCCGGGTTACAGAAAACAAATATGT 60.336 40.000 2.18 0.00 43.14 2.29
5015 7205 6.997476 GCCTTGATCCAGAGAAAGATTAGAAT 59.003 38.462 0.00 0.00 0.00 2.40
5030 7220 6.821388 AGATTAGAATACTGTTTGCCTCGAT 58.179 36.000 0.00 0.00 0.00 3.59
5031 7221 7.275920 AGATTAGAATACTGTTTGCCTCGATT 58.724 34.615 0.00 0.00 0.00 3.34
5036 7226 5.957842 ATACTGTTTGCCTCGATTTTCAA 57.042 34.783 0.00 0.00 0.00 2.69
5134 7326 0.813610 TGAGGTCAACGTTGGCACTG 60.814 55.000 31.79 5.73 33.59 3.66
5143 7336 1.336755 ACGTTGGCACTGGATGAAAAC 59.663 47.619 0.00 0.00 0.00 2.43
5194 7387 3.963374 TGAGCTGGCACATCTTATCTACT 59.037 43.478 0.00 0.00 33.65 2.57
5198 7391 7.451566 TGAGCTGGCACATCTTATCTACTAATA 59.548 37.037 0.00 0.00 33.65 0.98
5200 7393 7.453126 AGCTGGCACATCTTATCTACTAATACT 59.547 37.037 0.00 0.00 38.20 2.12
5213 7406 7.154435 TCTACTAATACTCGCTGTTTTGACT 57.846 36.000 0.00 0.00 0.00 3.41
5215 7408 6.707599 ACTAATACTCGCTGTTTTGACTTC 57.292 37.500 0.00 0.00 0.00 3.01
5216 7409 6.220930 ACTAATACTCGCTGTTTTGACTTCA 58.779 36.000 0.00 0.00 0.00 3.02
5218 7411 8.033038 ACTAATACTCGCTGTTTTGACTTCATA 58.967 33.333 0.00 0.00 0.00 2.15
5219 7412 4.992381 ACTCGCTGTTTTGACTTCATAC 57.008 40.909 0.00 0.00 0.00 2.39
5220 7413 4.632153 ACTCGCTGTTTTGACTTCATACT 58.368 39.130 0.00 0.00 0.00 2.12
5223 7416 7.544622 ACTCGCTGTTTTGACTTCATACTATA 58.455 34.615 0.00 0.00 0.00 1.31
5225 7418 7.544622 TCGCTGTTTTGACTTCATACTATACT 58.455 34.615 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.949434 ACATGCAAGAGAGAGAAAAAGAAAAT 58.051 30.769 0.00 0.00 0.00 1.82
4 5 6.949352 AACATGCAAGAGAGAGAAAAAGAA 57.051 33.333 0.00 0.00 0.00 2.52
6 7 7.814642 ACATAACATGCAAGAGAGAGAAAAAG 58.185 34.615 0.00 0.00 0.00 2.27
7 8 7.750229 ACATAACATGCAAGAGAGAGAAAAA 57.250 32.000 0.00 0.00 0.00 1.94
8 9 7.750229 AACATAACATGCAAGAGAGAGAAAA 57.250 32.000 0.00 0.00 0.00 2.29
10 11 7.615403 ACTAACATAACATGCAAGAGAGAGAA 58.385 34.615 0.00 0.00 0.00 2.87
11 12 7.175347 ACTAACATAACATGCAAGAGAGAGA 57.825 36.000 0.00 0.00 0.00 3.10
12 13 7.547019 TCAACTAACATAACATGCAAGAGAGAG 59.453 37.037 0.00 0.00 0.00 3.20
13 14 7.386059 TCAACTAACATAACATGCAAGAGAGA 58.614 34.615 0.00 0.00 0.00 3.10
14 15 7.601073 TCAACTAACATAACATGCAAGAGAG 57.399 36.000 0.00 0.00 0.00 3.20
15 16 8.453320 CAATCAACTAACATAACATGCAAGAGA 58.547 33.333 0.00 0.00 0.00 3.10
16 17 8.453320 TCAATCAACTAACATAACATGCAAGAG 58.547 33.333 0.00 0.00 0.00 2.85
17 18 8.334263 TCAATCAACTAACATAACATGCAAGA 57.666 30.769 0.00 0.00 0.00 3.02
18 19 8.969121 TTCAATCAACTAACATAACATGCAAG 57.031 30.769 0.00 0.00 0.00 4.01
19 20 9.926158 ATTTCAATCAACTAACATAACATGCAA 57.074 25.926 0.00 0.00 0.00 4.08
20 21 9.926158 AATTTCAATCAACTAACATAACATGCA 57.074 25.926 0.00 0.00 0.00 3.96
36 37 9.912634 GACTGAGATTTAACCAAATTTCAATCA 57.087 29.630 7.02 0.00 41.87 2.57
37 38 9.065871 CGACTGAGATTTAACCAAATTTCAATC 57.934 33.333 5.26 4.31 41.87 2.67
38 39 8.792633 TCGACTGAGATTTAACCAAATTTCAAT 58.207 29.630 5.26 0.00 41.87 2.57
39 40 8.073768 GTCGACTGAGATTTAACCAAATTTCAA 58.926 33.333 8.70 0.00 41.87 2.69
40 41 7.444183 AGTCGACTGAGATTTAACCAAATTTCA 59.556 33.333 19.30 4.05 40.85 2.69
41 42 7.746475 CAGTCGACTGAGATTTAACCAAATTTC 59.254 37.037 36.73 0.00 46.59 2.17
42 43 7.584987 CAGTCGACTGAGATTTAACCAAATTT 58.415 34.615 36.73 0.00 46.59 1.82
43 44 7.133891 CAGTCGACTGAGATTTAACCAAATT 57.866 36.000 36.73 0.00 46.59 1.82
44 45 6.727824 CAGTCGACTGAGATTTAACCAAAT 57.272 37.500 36.73 0.00 46.59 2.32
58 59 0.736053 GGCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
59 60 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
60 61 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
61 62 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
62 63 1.066303 GATGTGGCTAGGTCTCAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
63 64 2.383855 AGATGTGGCTAGGTCTCAGTC 58.616 52.381 0.00 0.00 0.00 3.51
64 65 2.541233 AGATGTGGCTAGGTCTCAGT 57.459 50.000 0.00 0.00 0.00 3.41
65 66 3.902881 AAAGATGTGGCTAGGTCTCAG 57.097 47.619 0.00 0.00 0.00 3.35
66 67 5.957771 ATAAAAGATGTGGCTAGGTCTCA 57.042 39.130 0.00 0.00 0.00 3.27
67 68 8.732746 TTTTATAAAAGATGTGGCTAGGTCTC 57.267 34.615 6.54 0.00 0.00 3.36
68 69 8.957466 GTTTTTATAAAAGATGTGGCTAGGTCT 58.043 33.333 10.40 0.00 0.00 3.85
69 70 8.736244 TGTTTTTATAAAAGATGTGGCTAGGTC 58.264 33.333 10.40 0.00 0.00 3.85
70 71 8.644374 TGTTTTTATAAAAGATGTGGCTAGGT 57.356 30.769 10.40 0.00 0.00 3.08
98 99 8.740906 TGAGGTGTTGTAATGTGTTTCTAAAAA 58.259 29.630 0.00 0.00 0.00 1.94
99 100 8.185505 GTGAGGTGTTGTAATGTGTTTCTAAAA 58.814 33.333 0.00 0.00 0.00 1.52
100 101 7.201750 GGTGAGGTGTTGTAATGTGTTTCTAAA 60.202 37.037 0.00 0.00 0.00 1.85
101 102 6.261381 GGTGAGGTGTTGTAATGTGTTTCTAA 59.739 38.462 0.00 0.00 0.00 2.10
102 103 5.761234 GGTGAGGTGTTGTAATGTGTTTCTA 59.239 40.000 0.00 0.00 0.00 2.10
103 104 4.578928 GGTGAGGTGTTGTAATGTGTTTCT 59.421 41.667 0.00 0.00 0.00 2.52
104 105 4.578928 AGGTGAGGTGTTGTAATGTGTTTC 59.421 41.667 0.00 0.00 0.00 2.78
105 106 4.532834 AGGTGAGGTGTTGTAATGTGTTT 58.467 39.130 0.00 0.00 0.00 2.83
106 107 4.164843 AGGTGAGGTGTTGTAATGTGTT 57.835 40.909 0.00 0.00 0.00 3.32
107 108 3.857157 AGGTGAGGTGTTGTAATGTGT 57.143 42.857 0.00 0.00 0.00 3.72
108 109 4.451096 GTGTAGGTGAGGTGTTGTAATGTG 59.549 45.833 0.00 0.00 0.00 3.21
109 110 4.101898 TGTGTAGGTGAGGTGTTGTAATGT 59.898 41.667 0.00 0.00 0.00 2.71
110 111 4.637276 TGTGTAGGTGAGGTGTTGTAATG 58.363 43.478 0.00 0.00 0.00 1.90
111 112 4.967084 TGTGTAGGTGAGGTGTTGTAAT 57.033 40.909 0.00 0.00 0.00 1.89
112 113 4.345547 TCATGTGTAGGTGAGGTGTTGTAA 59.654 41.667 0.00 0.00 0.00 2.41
113 114 3.898741 TCATGTGTAGGTGAGGTGTTGTA 59.101 43.478 0.00 0.00 0.00 2.41
114 115 2.703536 TCATGTGTAGGTGAGGTGTTGT 59.296 45.455 0.00 0.00 0.00 3.32
115 116 3.329386 CTCATGTGTAGGTGAGGTGTTG 58.671 50.000 0.00 0.00 38.50 3.33
116 117 2.289694 GCTCATGTGTAGGTGAGGTGTT 60.290 50.000 4.74 0.00 41.62 3.32
117 118 1.276421 GCTCATGTGTAGGTGAGGTGT 59.724 52.381 4.74 0.00 41.62 4.16
118 119 1.276138 TGCTCATGTGTAGGTGAGGTG 59.724 52.381 4.74 0.00 41.62 4.00
119 120 1.276421 GTGCTCATGTGTAGGTGAGGT 59.724 52.381 4.74 0.00 41.62 3.85
120 121 1.276138 TGTGCTCATGTGTAGGTGAGG 59.724 52.381 4.74 0.00 41.62 3.86
121 122 2.749280 TGTGCTCATGTGTAGGTGAG 57.251 50.000 0.00 0.00 43.62 3.51
122 123 2.093500 GGATGTGCTCATGTGTAGGTGA 60.093 50.000 5.89 0.00 34.06 4.02
123 124 2.283298 GGATGTGCTCATGTGTAGGTG 58.717 52.381 5.89 0.00 34.06 4.00
124 125 1.908619 TGGATGTGCTCATGTGTAGGT 59.091 47.619 5.89 0.00 34.06 3.08
125 126 2.679837 GTTGGATGTGCTCATGTGTAGG 59.320 50.000 5.89 0.00 34.06 3.18
126 127 2.679837 GGTTGGATGTGCTCATGTGTAG 59.320 50.000 5.89 0.00 34.06 2.74
127 128 2.617788 GGGTTGGATGTGCTCATGTGTA 60.618 50.000 5.89 0.00 34.06 2.90
128 129 1.538047 GGTTGGATGTGCTCATGTGT 58.462 50.000 5.89 0.00 34.06 3.72
129 130 0.813184 GGGTTGGATGTGCTCATGTG 59.187 55.000 5.89 0.00 34.06 3.21
130 131 0.405198 TGGGTTGGATGTGCTCATGT 59.595 50.000 5.89 0.00 34.06 3.21
131 132 0.813184 GTGGGTTGGATGTGCTCATG 59.187 55.000 5.89 0.00 34.06 3.07
132 133 0.700564 AGTGGGTTGGATGTGCTCAT 59.299 50.000 0.00 0.00 36.95 2.90
133 134 0.036732 GAGTGGGTTGGATGTGCTCA 59.963 55.000 0.00 0.00 0.00 4.26
134 135 0.036732 TGAGTGGGTTGGATGTGCTC 59.963 55.000 0.00 0.00 0.00 4.26
135 136 0.250901 GTGAGTGGGTTGGATGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
136 137 1.577328 CGTGAGTGGGTTGGATGTGC 61.577 60.000 0.00 0.00 0.00 4.57
137 138 0.250295 ACGTGAGTGGGTTGGATGTG 60.250 55.000 0.00 0.00 46.97 3.21
138 139 2.142220 ACGTGAGTGGGTTGGATGT 58.858 52.632 0.00 0.00 46.97 3.06
148 149 8.630869 ATGTATGTGCATTCATAGACGTGAGTG 61.631 40.741 0.00 0.00 38.45 3.51
149 150 6.683861 ATGTATGTGCATTCATAGACGTGAGT 60.684 38.462 0.00 0.00 35.54 3.41
150 151 5.043248 TGTATGTGCATTCATAGACGTGAG 58.957 41.667 0.00 0.00 29.61 3.51
151 152 5.004922 TGTATGTGCATTCATAGACGTGA 57.995 39.130 0.00 0.00 29.61 4.35
152 153 5.107337 GGATGTATGTGCATTCATAGACGTG 60.107 44.000 0.00 0.00 30.49 4.49
153 154 4.991056 GGATGTATGTGCATTCATAGACGT 59.009 41.667 4.64 0.00 30.49 4.34
154 155 4.990426 TGGATGTATGTGCATTCATAGACG 59.010 41.667 4.64 0.00 29.94 4.18
155 156 6.293626 GGTTGGATGTATGTGCATTCATAGAC 60.294 42.308 4.64 4.62 34.62 2.59
156 157 5.764686 GGTTGGATGTATGTGCATTCATAGA 59.235 40.000 4.64 0.00 34.62 1.98
157 158 5.048504 GGGTTGGATGTATGTGCATTCATAG 60.049 44.000 4.64 0.00 34.62 2.23
158 159 4.826733 GGGTTGGATGTATGTGCATTCATA 59.173 41.667 4.64 0.00 34.62 2.15
159 160 3.638160 GGGTTGGATGTATGTGCATTCAT 59.362 43.478 4.36 4.36 34.62 2.57
160 161 3.023119 GGGTTGGATGTATGTGCATTCA 58.977 45.455 0.00 0.00 32.88 2.57
161 162 3.290710 AGGGTTGGATGTATGTGCATTC 58.709 45.455 0.00 0.00 0.00 2.67
162 163 3.290710 GAGGGTTGGATGTATGTGCATT 58.709 45.455 0.00 0.00 0.00 3.56
163 164 2.241941 TGAGGGTTGGATGTATGTGCAT 59.758 45.455 0.00 0.00 0.00 3.96
164 165 1.632920 TGAGGGTTGGATGTATGTGCA 59.367 47.619 0.00 0.00 0.00 4.57
165 166 2.418368 TGAGGGTTGGATGTATGTGC 57.582 50.000 0.00 0.00 0.00 4.57
166 167 4.132336 CTCATGAGGGTTGGATGTATGTG 58.868 47.826 15.38 0.00 0.00 3.21
167 168 3.434167 GCTCATGAGGGTTGGATGTATGT 60.434 47.826 23.89 0.00 0.00 2.29
168 169 3.144506 GCTCATGAGGGTTGGATGTATG 58.855 50.000 23.89 0.00 0.00 2.39
169 170 2.779430 TGCTCATGAGGGTTGGATGTAT 59.221 45.455 23.89 0.00 0.00 2.29
170 171 2.092968 GTGCTCATGAGGGTTGGATGTA 60.093 50.000 23.89 0.00 0.00 2.29
171 172 0.994247 TGCTCATGAGGGTTGGATGT 59.006 50.000 23.89 0.00 0.00 3.06
172 173 1.340308 TGTGCTCATGAGGGTTGGATG 60.340 52.381 23.89 0.00 0.00 3.51
173 174 0.994247 TGTGCTCATGAGGGTTGGAT 59.006 50.000 23.89 0.00 0.00 3.41
174 175 0.994247 ATGTGCTCATGAGGGTTGGA 59.006 50.000 23.89 0.00 32.51 3.53
175 176 1.386533 GATGTGCTCATGAGGGTTGG 58.613 55.000 23.89 0.00 34.06 3.77
176 177 1.386533 GGATGTGCTCATGAGGGTTG 58.613 55.000 23.89 0.00 34.06 3.77
177 178 0.107508 CGGATGTGCTCATGAGGGTT 60.108 55.000 23.89 0.00 34.06 4.11
178 179 0.977627 TCGGATGTGCTCATGAGGGT 60.978 55.000 23.89 0.00 34.06 4.34
179 180 0.178767 TTCGGATGTGCTCATGAGGG 59.821 55.000 23.89 0.81 34.06 4.30
180 181 1.938577 CTTTCGGATGTGCTCATGAGG 59.061 52.381 23.89 5.74 34.06 3.86
181 182 2.625737 ACTTTCGGATGTGCTCATGAG 58.374 47.619 18.84 18.84 34.06 2.90
182 183 2.768253 ACTTTCGGATGTGCTCATGA 57.232 45.000 5.89 0.00 34.06 3.07
183 184 4.571984 TGATAACTTTCGGATGTGCTCATG 59.428 41.667 5.89 0.00 34.06 3.07
184 185 4.572389 GTGATAACTTTCGGATGTGCTCAT 59.428 41.667 0.00 0.00 36.95 2.90
185 186 3.932710 GTGATAACTTTCGGATGTGCTCA 59.067 43.478 0.00 0.00 0.00 4.26
186 187 4.184629 AGTGATAACTTTCGGATGTGCTC 58.815 43.478 0.00 0.00 0.00 4.26
187 188 4.207891 AGTGATAACTTTCGGATGTGCT 57.792 40.909 0.00 0.00 0.00 4.40
188 189 4.651994 CAAGTGATAACTTTCGGATGTGC 58.348 43.478 0.00 0.00 0.00 4.57
189 190 4.154015 TGCAAGTGATAACTTTCGGATGTG 59.846 41.667 0.00 0.00 0.00 3.21
190 191 4.323417 TGCAAGTGATAACTTTCGGATGT 58.677 39.130 0.00 0.00 0.00 3.06
191 192 4.944962 TGCAAGTGATAACTTTCGGATG 57.055 40.909 0.00 0.00 0.00 3.51
192 193 4.201950 GCATGCAAGTGATAACTTTCGGAT 60.202 41.667 14.21 0.00 0.00 4.18
193 194 3.126858 GCATGCAAGTGATAACTTTCGGA 59.873 43.478 14.21 0.00 0.00 4.55
194 195 3.429085 GCATGCAAGTGATAACTTTCGG 58.571 45.455 14.21 0.00 0.00 4.30
195 196 3.429085 GGCATGCAAGTGATAACTTTCG 58.571 45.455 21.36 0.00 0.00 3.46
196 197 3.193267 TGGGCATGCAAGTGATAACTTTC 59.807 43.478 21.36 0.00 0.00 2.62
197 198 3.164268 TGGGCATGCAAGTGATAACTTT 58.836 40.909 21.36 0.00 0.00 2.66
198 199 2.806434 TGGGCATGCAAGTGATAACTT 58.194 42.857 21.36 0.00 0.00 2.66
199 200 2.512692 TGGGCATGCAAGTGATAACT 57.487 45.000 21.36 0.00 0.00 2.24
200 201 3.130869 TCATTGGGCATGCAAGTGATAAC 59.869 43.478 21.36 0.00 32.13 1.89
201 202 3.363627 TCATTGGGCATGCAAGTGATAA 58.636 40.909 21.36 3.67 32.13 1.75
202 203 3.015675 TCATTGGGCATGCAAGTGATA 57.984 42.857 21.36 0.00 32.13 2.15
203 204 1.855295 TCATTGGGCATGCAAGTGAT 58.145 45.000 21.36 2.78 32.13 3.06
204 205 1.546923 CTTCATTGGGCATGCAAGTGA 59.453 47.619 21.36 15.86 32.13 3.41
205 206 1.404986 CCTTCATTGGGCATGCAAGTG 60.405 52.381 21.36 13.77 32.13 3.16
206 207 0.899720 CCTTCATTGGGCATGCAAGT 59.100 50.000 21.36 0.38 32.13 3.16
207 208 1.187974 TCCTTCATTGGGCATGCAAG 58.812 50.000 21.36 12.77 32.13 4.01
208 209 1.275856 GTTCCTTCATTGGGCATGCAA 59.724 47.619 21.36 6.46 32.13 4.08
209 210 0.896923 GTTCCTTCATTGGGCATGCA 59.103 50.000 21.36 0.00 32.13 3.96
210 211 0.896923 TGTTCCTTCATTGGGCATGC 59.103 50.000 9.90 9.90 32.13 4.06
211 212 2.223641 CGATGTTCCTTCATTGGGCATG 60.224 50.000 0.00 0.00 0.00 4.06
212 213 2.026641 CGATGTTCCTTCATTGGGCAT 58.973 47.619 0.00 0.00 0.00 4.40
213 214 1.462616 CGATGTTCCTTCATTGGGCA 58.537 50.000 0.00 0.00 0.00 5.36
214 215 0.101219 GCGATGTTCCTTCATTGGGC 59.899 55.000 0.00 0.00 31.79 5.36
215 216 1.402968 CAGCGATGTTCCTTCATTGGG 59.597 52.381 0.00 0.00 31.79 4.12
216 217 2.358957 TCAGCGATGTTCCTTCATTGG 58.641 47.619 0.00 0.00 31.79 3.16
217 218 4.424061 TTTCAGCGATGTTCCTTCATTG 57.576 40.909 0.00 0.00 33.64 2.82
218 219 5.222631 GTTTTTCAGCGATGTTCCTTCATT 58.777 37.500 0.00 0.00 0.00 2.57
219 220 4.321230 GGTTTTTCAGCGATGTTCCTTCAT 60.321 41.667 0.00 0.00 0.00 2.57
220 221 3.004315 GGTTTTTCAGCGATGTTCCTTCA 59.996 43.478 0.00 0.00 0.00 3.02
221 222 3.253432 AGGTTTTTCAGCGATGTTCCTTC 59.747 43.478 0.00 0.00 0.00 3.46
222 223 3.222603 AGGTTTTTCAGCGATGTTCCTT 58.777 40.909 0.00 0.00 0.00 3.36
223 224 2.863809 AGGTTTTTCAGCGATGTTCCT 58.136 42.857 0.00 0.04 0.00 3.36
224 225 4.759516 TTAGGTTTTTCAGCGATGTTCC 57.240 40.909 0.00 0.00 0.00 3.62
225 226 7.637709 AATTTTAGGTTTTTCAGCGATGTTC 57.362 32.000 0.00 0.00 0.00 3.18
226 227 9.705290 ATTAATTTTAGGTTTTTCAGCGATGTT 57.295 25.926 0.00 0.00 0.00 2.71
230 231 9.834628 CTGTATTAATTTTAGGTTTTTCAGCGA 57.165 29.630 0.00 0.00 0.00 4.93
231 232 9.834628 TCTGTATTAATTTTAGGTTTTTCAGCG 57.165 29.630 0.00 0.00 0.00 5.18
259 260 8.621286 CGAGGTTCAAATTATAGGCTTGTATTT 58.379 33.333 0.00 0.00 0.00 1.40
260 261 7.255139 GCGAGGTTCAAATTATAGGCTTGTATT 60.255 37.037 0.00 0.00 0.00 1.89
261 262 6.204882 GCGAGGTTCAAATTATAGGCTTGTAT 59.795 38.462 0.00 0.00 0.00 2.29
262 263 5.526111 GCGAGGTTCAAATTATAGGCTTGTA 59.474 40.000 0.00 0.00 0.00 2.41
263 264 4.335594 GCGAGGTTCAAATTATAGGCTTGT 59.664 41.667 0.00 0.00 0.00 3.16
264 265 4.335315 TGCGAGGTTCAAATTATAGGCTTG 59.665 41.667 0.00 0.00 0.00 4.01
265 266 4.523083 TGCGAGGTTCAAATTATAGGCTT 58.477 39.130 0.00 0.00 0.00 4.35
266 267 4.150897 TGCGAGGTTCAAATTATAGGCT 57.849 40.909 0.00 0.00 0.00 4.58
267 268 4.261197 CCTTGCGAGGTTCAAATTATAGGC 60.261 45.833 12.40 0.00 38.32 3.93
268 269 5.123227 TCCTTGCGAGGTTCAAATTATAGG 58.877 41.667 19.96 0.00 43.97 2.57
269 270 6.677781 TTCCTTGCGAGGTTCAAATTATAG 57.322 37.500 19.96 0.00 43.97 1.31
270 271 5.065988 GCTTCCTTGCGAGGTTCAAATTATA 59.934 40.000 19.96 0.00 43.97 0.98
271 272 4.142381 GCTTCCTTGCGAGGTTCAAATTAT 60.142 41.667 19.96 0.00 43.97 1.28
272 273 3.190535 GCTTCCTTGCGAGGTTCAAATTA 59.809 43.478 19.96 0.00 43.97 1.40
273 274 2.029918 GCTTCCTTGCGAGGTTCAAATT 60.030 45.455 19.96 0.00 43.97 1.82
274 275 1.541588 GCTTCCTTGCGAGGTTCAAAT 59.458 47.619 19.96 0.00 43.97 2.32
275 276 0.951558 GCTTCCTTGCGAGGTTCAAA 59.048 50.000 19.96 5.81 43.97 2.69
276 277 0.108585 AGCTTCCTTGCGAGGTTCAA 59.891 50.000 19.96 6.18 43.97 2.69
277 278 0.973632 TAGCTTCCTTGCGAGGTTCA 59.026 50.000 19.96 4.65 43.97 3.18
278 279 2.094762 TTAGCTTCCTTGCGAGGTTC 57.905 50.000 19.96 9.87 43.97 3.62
279 280 2.552743 GTTTTAGCTTCCTTGCGAGGTT 59.447 45.455 19.96 7.03 43.97 3.50
280 281 2.152016 GTTTTAGCTTCCTTGCGAGGT 58.848 47.619 19.96 2.85 43.97 3.85
281 282 2.151202 TGTTTTAGCTTCCTTGCGAGG 58.849 47.619 14.59 14.59 45.02 4.63
282 283 3.686726 AGATGTTTTAGCTTCCTTGCGAG 59.313 43.478 0.00 0.00 38.13 5.03
283 284 3.674997 AGATGTTTTAGCTTCCTTGCGA 58.325 40.909 0.00 0.00 38.13 5.10
284 285 5.545658 TTAGATGTTTTAGCTTCCTTGCG 57.454 39.130 0.00 0.00 38.13 4.85
285 286 5.335935 GCTTAGATGTTTTAGCTTCCTTGC 58.664 41.667 0.00 0.00 0.00 4.01
286 287 5.415701 TGGCTTAGATGTTTTAGCTTCCTTG 59.584 40.000 0.00 0.00 34.16 3.61
287 288 5.416013 GTGGCTTAGATGTTTTAGCTTCCTT 59.584 40.000 0.00 0.00 34.16 3.36
288 289 4.944317 GTGGCTTAGATGTTTTAGCTTCCT 59.056 41.667 0.00 0.00 34.16 3.36
289 290 4.201822 CGTGGCTTAGATGTTTTAGCTTCC 60.202 45.833 0.00 0.00 34.16 3.46
290 291 4.392138 ACGTGGCTTAGATGTTTTAGCTTC 59.608 41.667 0.00 0.00 34.16 3.86
291 292 4.324267 ACGTGGCTTAGATGTTTTAGCTT 58.676 39.130 0.00 0.00 34.16 3.74
292 293 3.933332 GACGTGGCTTAGATGTTTTAGCT 59.067 43.478 0.00 0.00 34.16 3.32
293 294 3.241995 CGACGTGGCTTAGATGTTTTAGC 60.242 47.826 0.00 0.00 0.00 3.09
294 295 4.171005 TCGACGTGGCTTAGATGTTTTAG 58.829 43.478 0.00 0.00 0.00 1.85
295 296 4.171005 CTCGACGTGGCTTAGATGTTTTA 58.829 43.478 0.00 0.00 0.00 1.52
296 297 2.993899 CTCGACGTGGCTTAGATGTTTT 59.006 45.455 0.00 0.00 0.00 2.43
297 298 2.607187 CTCGACGTGGCTTAGATGTTT 58.393 47.619 0.00 0.00 0.00 2.83
298 299 1.736032 GCTCGACGTGGCTTAGATGTT 60.736 52.381 0.00 0.00 0.00 2.71
299 300 0.179134 GCTCGACGTGGCTTAGATGT 60.179 55.000 0.00 0.00 0.00 3.06
300 301 0.101399 AGCTCGACGTGGCTTAGATG 59.899 55.000 11.04 0.00 34.96 2.90
301 302 0.382515 GAGCTCGACGTGGCTTAGAT 59.617 55.000 16.12 0.00 39.05 1.98
302 303 1.801332 GAGCTCGACGTGGCTTAGA 59.199 57.895 16.12 0.00 39.05 2.10
303 304 1.583967 CGAGCTCGACGTGGCTTAG 60.584 63.158 32.06 11.24 43.02 2.18
304 305 2.483745 CGAGCTCGACGTGGCTTA 59.516 61.111 32.06 0.00 43.02 3.09
308 309 3.175240 CTTGCGAGCTCGACGTGG 61.175 66.667 38.74 18.39 43.02 4.94
309 310 1.548973 AAACTTGCGAGCTCGACGTG 61.549 55.000 38.74 24.60 43.02 4.49
310 311 1.276145 GAAACTTGCGAGCTCGACGT 61.276 55.000 38.74 26.13 43.02 4.34
311 312 1.412606 GAAACTTGCGAGCTCGACG 59.587 57.895 38.74 25.49 43.02 5.12
312 313 1.412606 CGAAACTTGCGAGCTCGAC 59.587 57.895 38.74 27.87 43.02 4.20
313 314 2.372690 GCGAAACTTGCGAGCTCGA 61.373 57.895 38.74 20.88 43.02 4.04
314 315 1.959899 ATGCGAAACTTGCGAGCTCG 61.960 55.000 31.37 31.37 43.27 5.03
315 316 0.519999 CATGCGAAACTTGCGAGCTC 60.520 55.000 2.73 2.73 34.24 4.09
316 317 0.950555 TCATGCGAAACTTGCGAGCT 60.951 50.000 0.00 0.00 34.24 4.09
317 318 0.110238 TTCATGCGAAACTTGCGAGC 60.110 50.000 0.00 0.00 34.24 5.03
318 319 2.532531 ATTCATGCGAAACTTGCGAG 57.467 45.000 0.00 0.00 34.01 5.03
319 320 2.987413 AATTCATGCGAAACTTGCGA 57.013 40.000 0.00 0.00 34.01 5.10
320 321 4.487004 CGTAAAATTCATGCGAAACTTGCG 60.487 41.667 0.00 0.00 34.01 4.85
321 322 4.718168 GCGTAAAATTCATGCGAAACTTGC 60.718 41.667 5.99 0.00 34.01 4.01
322 323 4.381270 TGCGTAAAATTCATGCGAAACTTG 59.619 37.500 5.99 0.00 34.01 3.16
323 324 4.381566 GTGCGTAAAATTCATGCGAAACTT 59.618 37.500 5.99 0.00 34.01 2.66
324 325 3.911964 GTGCGTAAAATTCATGCGAAACT 59.088 39.130 5.99 0.00 34.01 2.66
325 326 3.666334 TGTGCGTAAAATTCATGCGAAAC 59.334 39.130 5.99 4.35 34.01 2.78
326 327 3.890128 TGTGCGTAAAATTCATGCGAAA 58.110 36.364 5.99 0.00 34.01 3.46
327 328 3.544356 TGTGCGTAAAATTCATGCGAA 57.456 38.095 5.99 0.00 35.05 4.70
328 329 3.755965 ATGTGCGTAAAATTCATGCGA 57.244 38.095 5.99 0.00 0.00 5.10
329 330 4.821414 AAATGTGCGTAAAATTCATGCG 57.179 36.364 0.00 0.00 0.00 4.73
330 331 5.285134 ACGTAAATGTGCGTAAAATTCATGC 59.715 36.000 0.00 0.00 44.77 4.06
331 332 6.304445 ACACGTAAATGTGCGTAAAATTCATG 59.696 34.615 0.00 0.00 44.82 3.07
332 333 6.304445 CACACGTAAATGTGCGTAAAATTCAT 59.696 34.615 0.00 0.00 44.82 2.57
333 334 5.621634 CACACGTAAATGTGCGTAAAATTCA 59.378 36.000 0.00 0.00 44.82 2.57
334 335 6.049767 CACACGTAAATGTGCGTAAAATTC 57.950 37.500 0.00 0.00 44.82 2.17
371 373 1.247567 ACCGGTCTTCTGGCAATTTG 58.752 50.000 0.00 0.00 43.58 2.32
379 381 0.036671 GGGTTGGTACCGGTCTTCTG 60.037 60.000 12.40 0.00 46.04 3.02
392 394 1.523154 CGTGACATGGGTTGGGTTGG 61.523 60.000 0.00 0.00 0.00 3.77
393 395 1.523154 CCGTGACATGGGTTGGGTTG 61.523 60.000 5.72 0.00 0.00 3.77
394 396 1.228429 CCGTGACATGGGTTGGGTT 60.228 57.895 5.72 0.00 0.00 4.11
395 397 2.406002 GACCGTGACATGGGTTGGGT 62.406 60.000 18.07 0.00 36.46 4.51
396 398 1.674322 GACCGTGACATGGGTTGGG 60.674 63.158 18.07 0.00 36.46 4.12
415 417 0.111061 TGGTCCAAGCACAAGCAGAT 59.889 50.000 0.00 0.00 45.49 2.90
424 426 4.268720 GTTGGGTTGGTCCAAGCA 57.731 55.556 29.87 16.30 46.28 3.91
426 428 1.901464 CGGGTTGGGTTGGTCCAAG 60.901 63.158 3.96 0.00 46.28 3.61
427 429 2.196229 CGGGTTGGGTTGGTCCAA 59.804 61.111 0.00 0.00 43.82 3.53
428 430 3.892162 CCGGGTTGGGTTGGTCCA 61.892 66.667 0.00 0.00 38.11 4.02
429 431 3.855503 GACCGGGTTGGGTTGGTCC 62.856 68.421 6.32 0.00 44.06 4.46
438 440 0.176219 TATAAGTGGCGACCGGGTTG 59.824 55.000 6.32 10.24 0.00 3.77
452 454 3.203716 GGTCGGAGGCAGGTTTTATAAG 58.796 50.000 0.00 0.00 0.00 1.73
521 523 3.726517 CGGGCCGTTCTTGTGCAG 61.727 66.667 19.97 0.00 0.00 4.41
522 524 3.758973 TTCGGGCCGTTCTTGTGCA 62.759 57.895 27.32 0.00 0.00 4.57
684 698 2.231820 GCGTTTTATAGGCGCGGAT 58.768 52.632 8.83 0.00 41.70 4.18
862 886 1.831736 AGAGGGGTCGAAATCAATCGT 59.168 47.619 0.00 0.00 43.19 3.73
864 888 2.356069 GCAAGAGGGGTCGAAATCAATC 59.644 50.000 0.00 0.00 0.00 2.67
865 889 2.025887 AGCAAGAGGGGTCGAAATCAAT 60.026 45.455 0.00 0.00 0.00 2.57
866 890 1.351017 AGCAAGAGGGGTCGAAATCAA 59.649 47.619 0.00 0.00 0.00 2.57
867 891 0.984230 AGCAAGAGGGGTCGAAATCA 59.016 50.000 0.00 0.00 0.00 2.57
875 899 1.906574 TCAATAACGAGCAAGAGGGGT 59.093 47.619 0.00 0.00 0.00 4.95
876 900 2.691409 TCAATAACGAGCAAGAGGGG 57.309 50.000 0.00 0.00 0.00 4.79
881 905 6.740002 CACAAAAGAGATCAATAACGAGCAAG 59.260 38.462 0.00 0.00 0.00 4.01
888 912 7.141363 ACAAGCACACAAAAGAGATCAATAAC 58.859 34.615 0.00 0.00 0.00 1.89
890 914 6.882610 ACAAGCACACAAAAGAGATCAATA 57.117 33.333 0.00 0.00 0.00 1.90
891 915 5.779529 ACAAGCACACAAAAGAGATCAAT 57.220 34.783 0.00 0.00 0.00 2.57
905 929 4.202000 ACACATCGAATCAAAACAAGCACA 60.202 37.500 0.00 0.00 0.00 4.57
912 936 3.666902 CGGTCCACACATCGAATCAAAAC 60.667 47.826 0.00 0.00 0.00 2.43
926 950 1.737838 GATTGAGCAATCGGTCCACA 58.262 50.000 7.38 0.00 37.97 4.17
947 971 0.324275 TTAGCAAACCCTCCCATGGC 60.324 55.000 6.09 0.00 0.00 4.40
1152 1176 4.183865 TCACTGAAGATTGCGAATTCGAT 58.816 39.130 31.01 16.44 43.02 3.59
1209 1233 2.041508 TTTTTGGGGGTGCTGCCA 60.042 55.556 0.00 0.00 39.65 4.92
1250 1274 2.291741 ACGTACCGCTACATAGCCTAAC 59.708 50.000 5.33 0.78 46.34 2.34
1252 1276 2.260844 ACGTACCGCTACATAGCCTA 57.739 50.000 5.33 0.00 46.34 3.93
1261 1285 1.326576 CGAAACGAAACGTACCGCTA 58.673 50.000 9.06 0.00 39.99 4.26
1273 1297 5.128992 TGATATTATAGCAGGCGAAACGA 57.871 39.130 0.00 0.00 0.00 3.85
1274 1298 5.839262 TTGATATTATAGCAGGCGAAACG 57.161 39.130 0.00 0.00 0.00 3.60
1850 2003 4.698201 TCACCATACCTTTGAGACACAA 57.302 40.909 0.00 0.00 36.65 3.33
1920 2073 1.731709 CGACGCCATTCATGAACTTGA 59.268 47.619 11.07 0.00 0.00 3.02
2103 2257 5.008415 CAGATGACAGAAAAGCAGAAACTGT 59.992 40.000 0.00 0.00 43.10 3.55
2965 3366 2.203998 CCTGACCACCCTGACCCT 60.204 66.667 0.00 0.00 0.00 4.34
3094 5087 2.774234 CTCCTTCCAGCTCCTTGGATTA 59.226 50.000 0.00 0.00 46.22 1.75
3095 5088 1.563410 CTCCTTCCAGCTCCTTGGATT 59.437 52.381 0.00 0.00 46.22 3.01
3428 5557 5.670485 TGCTGATTTCATATCACGTTAGGT 58.330 37.500 0.00 0.00 0.00 3.08
3430 5559 6.699204 AGACTGCTGATTTCATATCACGTTAG 59.301 38.462 0.00 0.00 0.00 2.34
3442 5571 3.731264 GCTGAATGCAGACTGCTGATTTC 60.731 47.826 26.94 21.55 45.31 2.17
3472 5601 0.236449 GTTACAAACTGGGAACGGCG 59.764 55.000 4.80 4.80 41.93 6.46
3506 5635 6.566564 GCAGGTCAAAATATATGATGGTCACG 60.567 42.308 0.00 0.00 0.00 4.35
3509 5638 6.712095 TCTGCAGGTCAAAATATATGATGGTC 59.288 38.462 15.13 0.00 0.00 4.02
3655 5784 6.039717 GGCTGATTGGAAAGCATAGATAAACA 59.960 38.462 0.00 0.00 43.65 2.83
3665 5794 0.537143 ACACGGCTGATTGGAAAGCA 60.537 50.000 0.00 0.00 41.67 3.91
3831 5965 8.004087 AGACTCGTACCTTTGTATAAGCATAA 57.996 34.615 0.00 0.00 0.00 1.90
3994 6132 7.759886 AGTTTTGCTTGGAGTAAAAGAAAAGAC 59.240 33.333 4.54 0.00 39.74 3.01
4122 6268 8.789825 AAAAGCTAGCATATTCATCTATCCAG 57.210 34.615 18.83 0.00 0.00 3.86
4209 6355 0.601046 TGCCGTCAAGCTTCTGTCTG 60.601 55.000 0.00 0.00 0.00 3.51
4259 6405 8.764287 GCTACTTGTGAAAATAGCAAATGTTTT 58.236 29.630 0.00 0.00 39.87 2.43
4306 6455 3.636764 TCGGCATTAGAGCAGTATCTTCA 59.363 43.478 0.00 0.00 35.83 3.02
4325 6474 4.718961 ACCCATTCAAGATAAAGGATCGG 58.281 43.478 0.00 0.00 39.80 4.18
4380 6533 0.881600 TGTTCGACGAGTGAGGACGA 60.882 55.000 0.00 0.00 0.00 4.20
4382 6535 1.618861 CATGTTCGACGAGTGAGGAC 58.381 55.000 0.00 0.00 0.00 3.85
4445 6598 6.535508 CCTTACATCTCAAAGTTACTAGTGCC 59.464 42.308 5.39 0.00 0.00 5.01
4499 6652 2.699846 TGCAATGGCTTCAAAGGAAACT 59.300 40.909 0.00 0.00 42.18 2.66
4501 6654 2.548493 GCTGCAATGGCTTCAAAGGAAA 60.548 45.455 0.00 0.00 41.91 3.13
4505 6658 2.066262 CAAGCTGCAATGGCTTCAAAG 58.934 47.619 8.59 0.00 46.59 2.77
4655 6808 7.106239 ACCCAACAACACAAAAACATTCAATA 58.894 30.769 0.00 0.00 0.00 1.90
4712 6865 7.898014 TCATCTACTTGGCAAGAACTCTATA 57.102 36.000 32.50 12.11 0.00 1.31
4786 6939 9.823098 GATTAACGATACTACCATGTACTGTAG 57.177 37.037 13.00 13.00 40.21 2.74
4787 6940 8.786898 GGATTAACGATACTACCATGTACTGTA 58.213 37.037 0.00 0.00 0.00 2.74
4789 6942 7.594015 GTGGATTAACGATACTACCATGTACTG 59.406 40.741 0.00 0.00 0.00 2.74
4790 6943 7.255730 GGTGGATTAACGATACTACCATGTACT 60.256 40.741 0.00 0.00 0.00 2.73
4791 6944 6.865205 GGTGGATTAACGATACTACCATGTAC 59.135 42.308 0.00 0.00 0.00 2.90
4794 6947 5.849510 TGGTGGATTAACGATACTACCATG 58.150 41.667 0.00 0.00 29.92 3.66
4795 6948 6.681729 ATGGTGGATTAACGATACTACCAT 57.318 37.500 0.00 0.00 36.48 3.55
4796 6949 6.488769 AATGGTGGATTAACGATACTACCA 57.511 37.500 0.00 0.00 35.56 3.25
4797 6950 7.186021 CAAATGGTGGATTAACGATACTACC 57.814 40.000 0.00 0.00 0.00 3.18
4885 7038 2.409870 GCCGCTGCCTGCAACTTAT 61.410 57.895 4.16 0.00 43.06 1.73
4899 7055 0.040067 CAAAAGACAAGACAGGCCGC 60.040 55.000 0.00 0.00 0.00 6.53
5015 7205 5.278266 CCTTTGAAAATCGAGGCAAACAGTA 60.278 40.000 0.00 0.00 0.00 2.74
5030 7220 1.338337 TGATTTCCGCGCCTTTGAAAA 59.662 42.857 10.70 0.00 32.29 2.29
5031 7221 0.955178 TGATTTCCGCGCCTTTGAAA 59.045 45.000 0.00 5.14 33.00 2.69
5036 7226 1.586154 CTGGTTGATTTCCGCGCCTT 61.586 55.000 0.00 0.00 0.00 4.35
5134 7326 1.135402 GGACGGTGCATGTTTTCATCC 60.135 52.381 0.00 0.00 38.64 3.51
5143 7336 1.503091 CACATGTGGACGGTGCATG 59.497 57.895 18.51 9.94 43.84 4.06
5194 7387 8.033038 AGTATGAAGTCAAAACAGCGAGTATTA 58.967 33.333 0.00 0.00 0.00 0.98
5198 7391 4.632153 AGTATGAAGTCAAAACAGCGAGT 58.368 39.130 0.00 0.00 0.00 4.18
5200 7393 7.544622 AGTATAGTATGAAGTCAAAACAGCGA 58.455 34.615 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.