Multiple sequence alignment - TraesCS6D01G280300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G280300 chr6D 100.000 4014 0 0 1 4014 388115550 388119563 0.000000e+00 7413
1 TraesCS6D01G280300 chr6B 90.622 1930 128 29 1752 3659 579531064 579532962 0.000000e+00 2512
2 TraesCS6D01G280300 chr6B 94.457 884 30 14 846 1721 579530133 579531005 0.000000e+00 1343
3 TraesCS6D01G280300 chr6B 88.475 564 23 14 284 830 579529519 579530057 0.000000e+00 643
4 TraesCS6D01G280300 chr6A 92.977 655 27 9 2564 3216 533399590 533400227 0.000000e+00 937
5 TraesCS6D01G280300 chr6A 86.547 892 37 43 849 1707 533398056 533398897 0.000000e+00 905
6 TraesCS6D01G280300 chr6A 89.039 666 53 12 1820 2478 533398899 533399551 0.000000e+00 808
7 TraesCS6D01G280300 chr6A 89.300 486 23 12 3364 3837 533400581 533401049 2.080000e-162 582
8 TraesCS6D01G280300 chr6A 84.281 299 22 15 560 846 533397727 533398012 6.610000e-68 268
9 TraesCS6D01G280300 chr6A 95.152 165 7 1 3200 3364 533400263 533400426 3.980000e-65 259
10 TraesCS6D01G280300 chr6A 88.152 211 7 6 284 487 533397264 533397463 6.710000e-58 235
11 TraesCS6D01G280300 chr6A 95.238 147 6 1 3869 4014 533401049 533401195 8.680000e-57 231
12 TraesCS6D01G280300 chr6A 88.679 159 14 3 3653 3808 411770249 411770406 1.470000e-44 191
13 TraesCS6D01G280300 chr6A 92.233 103 3 4 1717 1819 521458340 521458437 1.500000e-29 141
14 TraesCS6D01G280300 chr7D 87.946 224 27 0 1325 1548 135394342 135394565 8.550000e-67 265
15 TraesCS6D01G280300 chr7D 89.032 155 11 4 3657 3807 34757018 34756866 1.900000e-43 187
16 TraesCS6D01G280300 chr7D 95.062 81 2 2 1752 1831 381797889 381797968 4.210000e-25 126
17 TraesCS6D01G280300 chr7D 85.981 107 11 4 1717 1823 11908432 11908534 1.180000e-20 111
18 TraesCS6D01G280300 chr7B 87.054 224 29 0 1325 1548 97306882 97307105 1.850000e-63 254
19 TraesCS6D01G280300 chr7B 95.122 82 2 2 1752 1831 481007310 481007229 1.170000e-25 128
20 TraesCS6D01G280300 chr7A 87.054 224 29 0 1325 1548 134540973 134541196 1.850000e-63 254
21 TraesCS6D01G280300 chr7A 88.387 155 12 4 3657 3807 421785006 421785158 8.860000e-42 182
22 TraesCS6D01G280300 chr7A 86.792 106 6 7 1752 1853 268571679 268571578 1.180000e-20 111
23 TraesCS6D01G280300 chr5D 88.312 154 16 2 3656 3808 528717277 528717429 2.460000e-42 183
24 TraesCS6D01G280300 chr5B 88.312 154 16 2 3656 3808 665744468 665744620 2.460000e-42 183
25 TraesCS6D01G280300 chr5A 88.312 154 16 2 3656 3808 656872284 656872436 2.460000e-42 183
26 TraesCS6D01G280300 chr1D 87.975 158 12 5 3657 3810 341037336 341037490 3.190000e-41 180
27 TraesCS6D01G280300 chr1D 85.965 171 14 8 3650 3813 314013697 314013530 1.480000e-39 174
28 TraesCS6D01G280300 chr1D 95.062 81 2 2 1752 1831 331539332 331539253 4.210000e-25 126
29 TraesCS6D01G280300 chr3A 85.465 172 21 3 3648 3816 509865414 509865244 4.120000e-40 176
30 TraesCS6D01G280300 chr4D 97.403 77 2 0 1752 1828 65862375 65862451 9.050000e-27 132
31 TraesCS6D01G280300 chr2D 87.736 106 5 7 1752 1853 520626580 520626681 2.530000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G280300 chr6D 388115550 388119563 4013 False 7413.000000 7413 100.000000 1 4014 1 chr6D.!!$F1 4013
1 TraesCS6D01G280300 chr6B 579529519 579532962 3443 False 1499.333333 2512 91.184667 284 3659 3 chr6B.!!$F1 3375
2 TraesCS6D01G280300 chr6A 533397264 533401195 3931 False 528.125000 937 90.085750 284 4014 8 chr6A.!!$F3 3730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 956 0.033796 ATTGACAGGGGCAGGTGATG 60.034 55.000 0.0 0.0 0.00 3.07 F
938 1225 0.253610 ACCCGTCGCCAATTTCCATA 59.746 50.000 0.0 0.0 0.00 2.74 F
1225 1523 0.320073 CCACGGCAAGTTCGAGGTAA 60.320 55.000 0.0 0.0 34.51 2.85 F
2155 2517 1.007734 CGCATACCGCTACGATGGT 60.008 57.895 0.0 0.0 42.34 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2474 0.036022 AAGAGGCACCAGAAGCTGAC 59.964 55.0 0.00 0.00 32.44 3.51 R
2155 2517 1.183030 ACGATGTGTTCACCTCCGGA 61.183 55.0 2.93 2.93 0.00 5.14 R
2513 2875 2.032030 CAGTTTTCTGTTACCAGTGCCG 60.032 50.0 0.00 0.00 42.48 5.69 R
3266 3680 0.034089 CCAAGGTCATTCCACTCCCC 60.034 60.0 0.00 0.00 39.02 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.430862 GCGAGTTGCATGCGGGAA 61.431 61.111 14.09 0.00 45.45 3.97
19 20 2.787249 CGAGTTGCATGCGGGAAG 59.213 61.111 14.09 0.25 0.00 3.46
20 21 1.741401 CGAGTTGCATGCGGGAAGA 60.741 57.895 14.09 0.00 0.00 2.87
21 22 1.091771 CGAGTTGCATGCGGGAAGAT 61.092 55.000 14.09 0.00 0.00 2.40
22 23 1.806247 CGAGTTGCATGCGGGAAGATA 60.806 52.381 14.09 0.00 0.00 1.98
23 24 1.869767 GAGTTGCATGCGGGAAGATAG 59.130 52.381 14.09 0.00 0.00 2.08
24 25 0.308993 GTTGCATGCGGGAAGATAGC 59.691 55.000 14.09 0.00 0.00 2.97
25 26 1.159713 TTGCATGCGGGAAGATAGCG 61.160 55.000 14.09 0.00 0.00 4.26
26 27 2.959357 GCATGCGGGAAGATAGCGC 61.959 63.158 0.00 0.00 0.00 5.92
27 28 2.031163 ATGCGGGAAGATAGCGCC 59.969 61.111 2.29 0.00 0.00 6.53
28 29 3.865929 ATGCGGGAAGATAGCGCCG 62.866 63.158 2.29 0.00 0.00 6.46
30 31 3.912907 CGGGAAGATAGCGCCGGT 61.913 66.667 2.29 0.00 0.00 5.28
31 32 2.029221 GGGAAGATAGCGCCGGTC 59.971 66.667 2.29 0.00 0.00 4.79
32 33 2.499827 GGGAAGATAGCGCCGGTCT 61.500 63.158 2.29 1.73 0.00 3.85
33 34 1.442148 GGAAGATAGCGCCGGTCTT 59.558 57.895 16.42 16.42 35.06 3.01
34 35 0.597898 GGAAGATAGCGCCGGTCTTC 60.598 60.000 26.30 26.30 44.38 2.87
35 36 0.597898 GAAGATAGCGCCGGTCTTCC 60.598 60.000 24.96 13.83 41.09 3.46
36 37 2.029221 GATAGCGCCGGTCTTCCC 59.971 66.667 2.29 0.00 0.00 3.97
37 38 2.762459 ATAGCGCCGGTCTTCCCA 60.762 61.111 2.29 0.00 0.00 4.37
38 39 2.701163 GATAGCGCCGGTCTTCCCAG 62.701 65.000 2.29 0.00 0.00 4.45
41 42 4.821589 CGCCGGTCTTCCCAGCTC 62.822 72.222 1.90 0.00 0.00 4.09
42 43 4.821589 GCCGGTCTTCCCAGCTCG 62.822 72.222 1.90 0.00 0.00 5.03
43 44 4.821589 CCGGTCTTCCCAGCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
44 45 4.821589 CGGTCTTCCCAGCTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
45 46 4.475135 GGTCTTCCCAGCTCGCCC 62.475 72.222 0.00 0.00 0.00 6.13
46 47 4.475135 GTCTTCCCAGCTCGCCCC 62.475 72.222 0.00 0.00 0.00 5.80
64 65 3.052082 CAGCACGCTGGGTTCAGG 61.052 66.667 11.29 0.00 41.19 3.86
67 68 3.052082 CACGCTGGGTTCAGGCTG 61.052 66.667 8.58 8.58 41.19 4.85
68 69 4.335647 ACGCTGGGTTCAGGCTGG 62.336 66.667 15.73 0.00 41.19 4.85
70 71 3.650950 GCTGGGTTCAGGCTGGGA 61.651 66.667 15.73 0.54 41.19 4.37
71 72 2.673523 CTGGGTTCAGGCTGGGAG 59.326 66.667 15.73 0.00 37.36 4.30
72 73 3.635268 CTGGGTTCAGGCTGGGAGC 62.635 68.421 15.73 12.89 41.46 4.70
73 74 4.785453 GGGTTCAGGCTGGGAGCG 62.785 72.222 15.73 0.00 43.62 5.03
97 98 2.254471 GGAAAACGAGGTCTTGGGC 58.746 57.895 0.00 0.00 0.00 5.36
98 99 1.574702 GGAAAACGAGGTCTTGGGCG 61.575 60.000 0.00 0.00 0.00 6.13
99 100 2.183858 GAAAACGAGGTCTTGGGCGC 62.184 60.000 0.00 0.00 0.00 6.53
100 101 2.951475 AAAACGAGGTCTTGGGCGCA 62.951 55.000 10.83 0.00 0.00 6.09
101 102 2.748058 AAACGAGGTCTTGGGCGCAT 62.748 55.000 10.83 0.00 0.00 4.73
102 103 3.197790 CGAGGTCTTGGGCGCATG 61.198 66.667 10.83 7.37 0.00 4.06
103 104 2.825836 GAGGTCTTGGGCGCATGG 60.826 66.667 10.83 7.26 0.00 3.66
106 107 3.818787 GTCTTGGGCGCATGGCTG 61.819 66.667 10.83 0.00 42.94 4.85
114 115 2.990967 CGCATGGCTGGGGTGTTT 60.991 61.111 0.00 0.00 0.00 2.83
115 116 2.573083 CGCATGGCTGGGGTGTTTT 61.573 57.895 0.00 0.00 0.00 2.43
116 117 1.754107 GCATGGCTGGGGTGTTTTT 59.246 52.632 0.00 0.00 0.00 1.94
138 139 2.288961 TTTTTACAACCGGCGCAAAA 57.711 40.000 10.83 2.19 0.00 2.44
139 140 2.288961 TTTTACAACCGGCGCAAAAA 57.711 40.000 10.83 0.91 0.00 1.94
160 161 4.625800 GTCCTAGCTGGGCTGTTG 57.374 61.111 12.10 0.00 40.10 3.33
161 162 1.679898 GTCCTAGCTGGGCTGTTGT 59.320 57.895 12.10 0.00 40.10 3.32
162 163 0.674895 GTCCTAGCTGGGCTGTTGTG 60.675 60.000 12.10 0.00 40.10 3.33
163 164 1.377725 CCTAGCTGGGCTGTTGTGG 60.378 63.158 1.92 0.00 40.10 4.17
164 165 1.377725 CTAGCTGGGCTGTTGTGGG 60.378 63.158 0.00 0.00 40.10 4.61
165 166 2.826777 CTAGCTGGGCTGTTGTGGGG 62.827 65.000 0.00 0.00 40.10 4.96
172 173 3.294493 CTGTTGTGGGGGCGGTTG 61.294 66.667 0.00 0.00 0.00 3.77
173 174 4.904590 TGTTGTGGGGGCGGTTGG 62.905 66.667 0.00 0.00 0.00 3.77
174 175 4.589675 GTTGTGGGGGCGGTTGGA 62.590 66.667 0.00 0.00 0.00 3.53
175 176 4.278513 TTGTGGGGGCGGTTGGAG 62.279 66.667 0.00 0.00 0.00 3.86
177 178 3.728373 GTGGGGGCGGTTGGAGAT 61.728 66.667 0.00 0.00 0.00 2.75
178 179 3.727258 TGGGGGCGGTTGGAGATG 61.727 66.667 0.00 0.00 0.00 2.90
180 181 4.115199 GGGGCGGTTGGAGATGCT 62.115 66.667 0.00 0.00 0.00 3.79
181 182 2.742116 GGGGCGGTTGGAGATGCTA 61.742 63.158 0.00 0.00 0.00 3.49
182 183 1.451936 GGGCGGTTGGAGATGCTAT 59.548 57.895 0.00 0.00 0.00 2.97
183 184 0.179018 GGGCGGTTGGAGATGCTATT 60.179 55.000 0.00 0.00 0.00 1.73
184 185 0.947244 GGCGGTTGGAGATGCTATTG 59.053 55.000 0.00 0.00 0.00 1.90
185 186 1.475034 GGCGGTTGGAGATGCTATTGA 60.475 52.381 0.00 0.00 0.00 2.57
186 187 1.869767 GCGGTTGGAGATGCTATTGAG 59.130 52.381 0.00 0.00 0.00 3.02
187 188 2.487934 CGGTTGGAGATGCTATTGAGG 58.512 52.381 0.00 0.00 0.00 3.86
188 189 2.158900 CGGTTGGAGATGCTATTGAGGT 60.159 50.000 0.00 0.00 0.00 3.85
189 190 3.069586 CGGTTGGAGATGCTATTGAGGTA 59.930 47.826 0.00 0.00 0.00 3.08
190 191 4.442893 CGGTTGGAGATGCTATTGAGGTAA 60.443 45.833 0.00 0.00 0.00 2.85
191 192 5.437060 GGTTGGAGATGCTATTGAGGTAAA 58.563 41.667 0.00 0.00 0.00 2.01
192 193 5.297029 GGTTGGAGATGCTATTGAGGTAAAC 59.703 44.000 0.00 0.00 0.00 2.01
193 194 5.692115 TGGAGATGCTATTGAGGTAAACA 57.308 39.130 0.00 0.00 0.00 2.83
194 195 6.061022 TGGAGATGCTATTGAGGTAAACAA 57.939 37.500 0.00 0.00 0.00 2.83
195 196 6.115446 TGGAGATGCTATTGAGGTAAACAAG 58.885 40.000 0.00 0.00 0.00 3.16
196 197 5.008118 GGAGATGCTATTGAGGTAAACAAGC 59.992 44.000 0.00 0.00 0.00 4.01
197 198 4.884164 AGATGCTATTGAGGTAAACAAGCC 59.116 41.667 0.00 0.00 0.00 4.35
198 199 4.301072 TGCTATTGAGGTAAACAAGCCT 57.699 40.909 0.00 0.00 37.91 4.58
199 200 4.662278 TGCTATTGAGGTAAACAAGCCTT 58.338 39.130 0.00 0.00 34.81 4.35
200 201 4.700213 TGCTATTGAGGTAAACAAGCCTTC 59.300 41.667 0.00 0.00 34.81 3.46
201 202 4.201822 GCTATTGAGGTAAACAAGCCTTCG 60.202 45.833 0.00 0.00 34.81 3.79
202 203 1.519408 TGAGGTAAACAAGCCTTCGC 58.481 50.000 0.00 0.00 34.81 4.70
212 213 3.435186 GCCTTCGCTTGACAGGCC 61.435 66.667 3.69 0.00 46.55 5.19
213 214 3.121030 CCTTCGCTTGACAGGCCG 61.121 66.667 3.69 0.00 0.00 6.13
214 215 2.357517 CTTCGCTTGACAGGCCGT 60.358 61.111 3.69 0.00 0.00 5.68
215 216 1.961277 CTTCGCTTGACAGGCCGTT 60.961 57.895 3.69 0.00 0.00 4.44
216 217 1.901650 CTTCGCTTGACAGGCCGTTC 61.902 60.000 3.69 0.00 0.00 3.95
217 218 2.357517 CGCTTGACAGGCCGTTCT 60.358 61.111 3.69 0.00 0.00 3.01
218 219 2.671177 CGCTTGACAGGCCGTTCTG 61.671 63.158 3.69 0.00 40.40 3.02
219 220 2.328099 GCTTGACAGGCCGTTCTGG 61.328 63.158 0.00 0.00 38.98 3.86
220 221 1.672356 CTTGACAGGCCGTTCTGGG 60.672 63.158 0.00 0.00 38.98 4.45
228 229 3.443045 CCGTTCTGGGCCATGCAC 61.443 66.667 6.72 2.98 0.00 4.57
229 230 3.803082 CGTTCTGGGCCATGCACG 61.803 66.667 6.72 12.33 32.76 5.34
230 231 2.359850 GTTCTGGGCCATGCACGA 60.360 61.111 6.72 0.00 32.76 4.35
231 232 1.971167 GTTCTGGGCCATGCACGAA 60.971 57.895 6.72 3.45 32.76 3.85
232 233 1.228398 TTCTGGGCCATGCACGAAA 60.228 52.632 6.72 0.00 32.76 3.46
233 234 0.611618 TTCTGGGCCATGCACGAAAT 60.612 50.000 6.72 0.00 32.76 2.17
234 235 0.611618 TCTGGGCCATGCACGAAATT 60.612 50.000 6.72 0.00 32.76 1.82
235 236 0.247185 CTGGGCCATGCACGAAATTT 59.753 50.000 6.72 0.00 32.76 1.82
236 237 1.476085 CTGGGCCATGCACGAAATTTA 59.524 47.619 6.72 0.00 32.76 1.40
237 238 1.476085 TGGGCCATGCACGAAATTTAG 59.524 47.619 0.00 0.00 32.76 1.85
238 239 1.748493 GGGCCATGCACGAAATTTAGA 59.252 47.619 4.39 0.00 0.00 2.10
239 240 2.223572 GGGCCATGCACGAAATTTAGAG 60.224 50.000 4.39 0.00 0.00 2.43
240 241 2.454055 GCCATGCACGAAATTTAGAGC 58.546 47.619 12.48 12.48 0.00 4.09
241 242 2.159393 GCCATGCACGAAATTTAGAGCA 60.159 45.455 21.35 21.35 38.23 4.26
242 243 3.673052 GCCATGCACGAAATTTAGAGCAA 60.673 43.478 22.49 10.12 37.49 3.91
243 244 4.675510 CCATGCACGAAATTTAGAGCAAT 58.324 39.130 22.49 11.57 37.49 3.56
244 245 4.736793 CCATGCACGAAATTTAGAGCAATC 59.263 41.667 22.49 0.00 37.49 2.67
245 246 5.449588 CCATGCACGAAATTTAGAGCAATCT 60.450 40.000 22.49 8.10 37.49 2.40
246 247 6.238456 CCATGCACGAAATTTAGAGCAATCTA 60.238 38.462 22.49 4.34 37.49 1.98
247 248 6.106877 TGCACGAAATTTAGAGCAATCTAC 57.893 37.500 18.06 0.00 31.50 2.59
248 249 5.874810 TGCACGAAATTTAGAGCAATCTACT 59.125 36.000 18.06 0.00 31.50 2.57
249 250 6.183360 TGCACGAAATTTAGAGCAATCTACTG 60.183 38.462 18.06 0.00 31.50 2.74
250 251 6.183360 GCACGAAATTTAGAGCAATCTACTGT 60.183 38.462 14.04 0.00 0.00 3.55
251 252 7.010183 GCACGAAATTTAGAGCAATCTACTGTA 59.990 37.037 14.04 0.00 0.00 2.74
252 253 8.535592 CACGAAATTTAGAGCAATCTACTGTAG 58.464 37.037 8.55 8.55 0.00 2.74
253 254 8.467598 ACGAAATTTAGAGCAATCTACTGTAGA 58.532 33.333 19.01 19.01 39.50 2.59
254 255 8.963130 CGAAATTTAGAGCAATCTACTGTAGAG 58.037 37.037 20.95 10.84 38.38 2.43
255 256 9.810545 GAAATTTAGAGCAATCTACTGTAGAGT 57.189 33.333 20.95 16.58 38.38 3.24
262 263 4.748892 CAATCTACTGTAGAGTGTGTGGG 58.251 47.826 27.99 9.53 43.67 4.61
263 264 3.520691 TCTACTGTAGAGTGTGTGGGT 57.479 47.619 13.34 0.00 33.21 4.51
264 265 4.645863 TCTACTGTAGAGTGTGTGGGTA 57.354 45.455 13.34 0.00 33.21 3.69
265 266 4.586884 TCTACTGTAGAGTGTGTGGGTAG 58.413 47.826 13.34 0.00 33.21 3.18
266 267 3.240310 ACTGTAGAGTGTGTGGGTAGT 57.760 47.619 0.00 0.00 0.00 2.73
267 268 2.891580 ACTGTAGAGTGTGTGGGTAGTG 59.108 50.000 0.00 0.00 0.00 2.74
268 269 2.231478 CTGTAGAGTGTGTGGGTAGTGG 59.769 54.545 0.00 0.00 0.00 4.00
269 270 2.245582 GTAGAGTGTGTGGGTAGTGGT 58.754 52.381 0.00 0.00 0.00 4.16
270 271 2.688902 AGAGTGTGTGGGTAGTGGTA 57.311 50.000 0.00 0.00 0.00 3.25
271 272 2.526432 AGAGTGTGTGGGTAGTGGTAG 58.474 52.381 0.00 0.00 0.00 3.18
272 273 0.974383 AGTGTGTGGGTAGTGGTAGC 59.026 55.000 0.00 0.00 0.00 3.58
273 274 0.036671 GTGTGTGGGTAGTGGTAGCC 60.037 60.000 0.00 0.00 45.76 3.93
282 283 2.893398 GTGGTAGCCACGAGGAGG 59.107 66.667 1.86 0.00 44.95 4.30
283 284 1.681327 GTGGTAGCCACGAGGAGGA 60.681 63.158 1.86 0.00 44.95 3.71
284 285 1.077805 TGGTAGCCACGAGGAGGAA 59.922 57.895 1.86 0.00 36.89 3.36
285 286 0.325296 TGGTAGCCACGAGGAGGAAT 60.325 55.000 1.86 0.00 36.89 3.01
329 338 4.067944 ACCCCACTCTTCTTCTGTCTAT 57.932 45.455 0.00 0.00 0.00 1.98
330 339 4.430441 ACCCCACTCTTCTTCTGTCTATT 58.570 43.478 0.00 0.00 0.00 1.73
331 340 5.590818 ACCCCACTCTTCTTCTGTCTATTA 58.409 41.667 0.00 0.00 0.00 0.98
332 341 6.023603 ACCCCACTCTTCTTCTGTCTATTAA 58.976 40.000 0.00 0.00 0.00 1.40
333 342 6.674419 ACCCCACTCTTCTTCTGTCTATTAAT 59.326 38.462 0.00 0.00 0.00 1.40
412 427 6.169557 TGTAAAGAAAAGCCACTCTGTCTA 57.830 37.500 0.00 0.00 0.00 2.59
413 428 6.588204 TGTAAAGAAAAGCCACTCTGTCTAA 58.412 36.000 0.00 0.00 0.00 2.10
414 429 7.224297 TGTAAAGAAAAGCCACTCTGTCTAAT 58.776 34.615 0.00 0.00 0.00 1.73
415 430 6.809630 AAAGAAAAGCCACTCTGTCTAATC 57.190 37.500 0.00 0.00 0.00 1.75
416 431 5.753721 AGAAAAGCCACTCTGTCTAATCT 57.246 39.130 0.00 0.00 0.00 2.40
417 432 6.859112 AGAAAAGCCACTCTGTCTAATCTA 57.141 37.500 0.00 0.00 0.00 1.98
418 433 7.430760 AGAAAAGCCACTCTGTCTAATCTAT 57.569 36.000 0.00 0.00 0.00 1.98
497 512 4.044426 GCATTTCTTCCGTTGGCATAATC 58.956 43.478 0.00 0.00 0.00 1.75
501 516 5.499139 TTCTTCCGTTGGCATAATCAATC 57.501 39.130 0.00 0.00 0.00 2.67
502 517 4.522114 TCTTCCGTTGGCATAATCAATCA 58.478 39.130 0.00 0.00 0.00 2.57
504 519 4.898829 TCCGTTGGCATAATCAATCAAG 57.101 40.909 0.00 0.00 0.00 3.02
561 767 3.197790 CCGACCAATCAGCGCTGG 61.198 66.667 35.36 23.56 38.77 4.85
627 836 0.321653 GCCCCTATAATCCAGCACGG 60.322 60.000 0.00 0.00 0.00 4.94
637 846 3.109547 CAGCACGGCGTCGCTTTA 61.110 61.111 26.34 0.00 40.63 1.85
640 853 1.133869 GCACGGCGTCGCTTTATTT 59.866 52.632 18.11 0.00 40.63 1.40
641 854 0.453782 GCACGGCGTCGCTTTATTTT 60.454 50.000 18.11 0.00 40.63 1.82
645 858 1.135916 CGGCGTCGCTTTATTTTTCCA 60.136 47.619 18.11 0.00 0.00 3.53
646 859 2.247637 GGCGTCGCTTTATTTTTCCAC 58.752 47.619 18.11 0.00 0.00 4.02
647 860 2.247637 GCGTCGCTTTATTTTTCCACC 58.752 47.619 10.68 0.00 0.00 4.61
648 861 2.350964 GCGTCGCTTTATTTTTCCACCA 60.351 45.455 10.68 0.00 0.00 4.17
649 862 3.854045 GCGTCGCTTTATTTTTCCACCAA 60.854 43.478 10.68 0.00 0.00 3.67
650 863 4.291783 CGTCGCTTTATTTTTCCACCAAA 58.708 39.130 0.00 0.00 0.00 3.28
735 956 0.033796 ATTGACAGGGGCAGGTGATG 60.034 55.000 0.00 0.00 0.00 3.07
736 957 1.133181 TTGACAGGGGCAGGTGATGA 61.133 55.000 0.00 0.00 0.00 2.92
742 963 3.785859 GGCAGGTGATGAGCCCGA 61.786 66.667 0.00 0.00 42.58 5.14
769 990 4.366684 CCCCACAGCCCAACCTCC 62.367 72.222 0.00 0.00 0.00 4.30
798 1022 1.043116 TGCATCGGGATCGGAGACTT 61.043 55.000 0.00 0.00 42.51 3.01
864 1150 2.035155 TTCCTCTCCTCCGCACGA 59.965 61.111 0.00 0.00 0.00 4.35
932 1219 2.671619 CACCACCCGTCGCCAATT 60.672 61.111 0.00 0.00 0.00 2.32
933 1220 2.114411 ACCACCCGTCGCCAATTT 59.886 55.556 0.00 0.00 0.00 1.82
935 1222 2.696759 CCACCCGTCGCCAATTTCC 61.697 63.158 0.00 0.00 0.00 3.13
936 1223 1.969064 CACCCGTCGCCAATTTCCA 60.969 57.895 0.00 0.00 0.00 3.53
937 1224 1.001393 ACCCGTCGCCAATTTCCAT 60.001 52.632 0.00 0.00 0.00 3.41
938 1225 0.253610 ACCCGTCGCCAATTTCCATA 59.746 50.000 0.00 0.00 0.00 2.74
941 1228 1.063469 CCGTCGCCAATTTCCATACAC 59.937 52.381 0.00 0.00 0.00 2.90
950 1238 5.105554 GCCAATTTCCATACACCAACACATA 60.106 40.000 0.00 0.00 0.00 2.29
953 1241 7.363705 CCAATTTCCATACACCAACACATACAT 60.364 37.037 0.00 0.00 0.00 2.29
993 1291 4.934942 CACACGCACACCGGACGA 62.935 66.667 9.46 0.00 42.52 4.20
994 1292 4.210093 ACACGCACACCGGACGAA 62.210 61.111 9.46 0.00 42.52 3.85
1225 1523 0.320073 CCACGGCAAGTTCGAGGTAA 60.320 55.000 0.00 0.00 34.51 2.85
1298 1598 2.801631 CCCTCTCCTGATCCGGTGC 61.802 68.421 0.00 0.00 0.00 5.01
1721 2048 9.314321 TGAATCTTCGATTATACTCCTTTTGTC 57.686 33.333 0.00 0.00 0.00 3.18
1722 2049 9.535878 GAATCTTCGATTATACTCCTTTTGTCT 57.464 33.333 0.00 0.00 0.00 3.41
1723 2050 9.892130 AATCTTCGATTATACTCCTTTTGTCTT 57.108 29.630 0.00 0.00 0.00 3.01
1724 2051 9.892130 ATCTTCGATTATACTCCTTTTGTCTTT 57.108 29.630 0.00 0.00 0.00 2.52
1726 2053 9.372369 CTTCGATTATACTCCTTTTGTCTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
1735 2062 8.840833 ACTCCTTTTGTCTTTCTAGAGATTTC 57.159 34.615 0.00 0.00 0.00 2.17
1737 2064 9.277783 CTCCTTTTGTCTTTCTAGAGATTTCAA 57.722 33.333 0.00 0.00 0.00 2.69
1738 2065 9.057089 TCCTTTTGTCTTTCTAGAGATTTCAAC 57.943 33.333 0.00 0.00 0.00 3.18
1739 2066 8.840321 CCTTTTGTCTTTCTAGAGATTTCAACA 58.160 33.333 0.00 0.00 0.00 3.33
1743 2070 8.731275 TGTCTTTCTAGAGATTTCAACAAACA 57.269 30.769 0.00 0.00 0.00 2.83
1744 2071 9.342308 TGTCTTTCTAGAGATTTCAACAAACAT 57.658 29.630 0.00 0.00 0.00 2.71
1747 2074 9.746711 CTTTCTAGAGATTTCAACAAACATACG 57.253 33.333 0.00 0.00 0.00 3.06
1748 2075 7.827819 TCTAGAGATTTCAACAAACATACGG 57.172 36.000 0.00 0.00 0.00 4.02
1749 2076 7.608153 TCTAGAGATTTCAACAAACATACGGA 58.392 34.615 0.00 0.00 0.00 4.69
1772 2127 6.128063 GGAGTATACATCCGTATGTGGTAGTC 60.128 46.154 3.56 8.69 45.99 2.59
1785 2140 7.065803 CGTATGTGGTAGTCCATTTGAAATCTT 59.934 37.037 0.00 0.00 46.20 2.40
1789 2144 9.137459 TGTGGTAGTCCATTTGAAATCTTTAAA 57.863 29.630 0.00 0.00 46.20 1.52
1956 2312 3.181480 GCTGGGCACTTTTCACTTTGTTA 60.181 43.478 0.00 0.00 0.00 2.41
1957 2313 4.501400 GCTGGGCACTTTTCACTTTGTTAT 60.501 41.667 0.00 0.00 0.00 1.89
1998 2357 5.940470 GTCATGGTGTATCTCCTGTTTTTCT 59.060 40.000 0.00 0.00 0.00 2.52
2005 2364 2.833794 TCTCCTGTTTTTCTGACGTGG 58.166 47.619 0.00 0.00 0.00 4.94
2030 2389 8.460428 GGTACTTATCCAGATCTAATAAGACGG 58.540 40.741 27.71 12.43 36.77 4.79
2048 2407 6.642683 AGACGGTTACAATTCTGAAATACG 57.357 37.500 0.00 0.00 0.00 3.06
2067 2429 3.522553 ACGTACTCCTTAATTGCTGCTC 58.477 45.455 0.00 0.00 0.00 4.26
2100 2462 6.357367 CAGCAGTCCCTAATTAAGGTAATGT 58.643 40.000 0.00 0.00 44.90 2.71
2120 2482 9.495754 GTAATGTTATTTCTTCATGTCAGCTTC 57.504 33.333 0.00 0.00 0.00 3.86
2155 2517 1.007734 CGCATACCGCTACGATGGT 60.008 57.895 0.00 0.00 42.34 3.55
2317 2679 5.816258 CAGCTACAATGATCAGTTCAGTCAT 59.184 40.000 0.09 0.00 37.89 3.06
2337 2699 7.227512 CAGTCATCCCATCACTAAGGTAAAATC 59.772 40.741 0.00 0.00 0.00 2.17
2360 2722 4.074970 ACAACTATTCACCTCCTTGCTTG 58.925 43.478 0.00 0.00 0.00 4.01
2372 2734 2.089980 CCTTGCTTGCTCATAGTTGCT 58.910 47.619 0.00 0.00 0.00 3.91
2409 2771 5.200368 ACCATGAAGACAAAAACACATCC 57.800 39.130 0.00 0.00 0.00 3.51
2416 2778 5.418310 AGACAAAAACACATCCTACAACG 57.582 39.130 0.00 0.00 0.00 4.10
2425 2787 2.259618 CATCCTACAACGAGAACACCG 58.740 52.381 0.00 0.00 0.00 4.94
2461 2823 6.241385 GCGTTTGAGTTGAACTATGTCATAC 58.759 40.000 0.00 0.00 0.00 2.39
2464 2826 7.095816 CGTTTGAGTTGAACTATGTCATACACA 60.096 37.037 0.00 0.00 40.18 3.72
2471 2833 9.494479 GTTGAACTATGTCATACACAAATGATG 57.506 33.333 0.00 0.00 38.97 3.07
2513 2875 8.519492 TTCGAAAAGAATGATGAATTTGGTTC 57.481 30.769 0.00 0.00 34.03 3.62
2572 2934 1.601903 TGTTCACCAACATTGTCGCTC 59.398 47.619 0.00 0.00 37.61 5.03
2601 2963 9.448438 AGAAACTTGTACTGCACATAATTATCA 57.552 29.630 0.00 0.00 36.90 2.15
2604 2966 8.654230 ACTTGTACTGCACATAATTATCAGAG 57.346 34.615 15.82 7.92 36.90 3.35
2645 3007 7.201249 CGTCGATAAAAGAGTAGTTCTTCACAC 60.201 40.741 0.00 0.00 45.41 3.82
2646 3008 7.808856 GTCGATAAAAGAGTAGTTCTTCACACT 59.191 37.037 0.00 0.00 45.41 3.55
2647 3009 8.358148 TCGATAAAAGAGTAGTTCTTCACACTT 58.642 33.333 0.00 0.00 45.41 3.16
2648 3010 8.640291 CGATAAAAGAGTAGTTCTTCACACTTC 58.360 37.037 0.00 0.00 45.41 3.01
2649 3011 9.477484 GATAAAAGAGTAGTTCTTCACACTTCA 57.523 33.333 0.00 0.00 45.41 3.02
2650 3012 7.541122 AAAAGAGTAGTTCTTCACACTTCAC 57.459 36.000 0.00 0.00 45.41 3.18
2651 3013 5.854010 AGAGTAGTTCTTCACACTTCACA 57.146 39.130 0.00 0.00 29.61 3.58
2678 3040 5.296780 TGACAGTTTCAGGAGACATTGTTTC 59.703 40.000 0.00 0.00 26.40 2.78
2686 3048 3.247648 AGGAGACATTGTTTCGTTGTTCG 59.752 43.478 1.66 0.00 41.41 3.95
2687 3049 3.001939 GGAGACATTGTTTCGTTGTTCGT 59.998 43.478 1.66 0.00 40.80 3.85
2688 3050 4.495184 GGAGACATTGTTTCGTTGTTCGTT 60.495 41.667 1.66 0.00 40.80 3.85
2689 3051 4.584394 AGACATTGTTTCGTTGTTCGTTC 58.416 39.130 0.00 0.00 40.80 3.95
2690 3052 3.347443 ACATTGTTTCGTTGTTCGTTCG 58.653 40.909 0.00 0.00 40.80 3.95
2699 3061 2.470140 CGTTGTTCGTTCGTACTGATGC 60.470 50.000 3.98 0.00 34.52 3.91
2989 3351 6.753279 GCAGAGACTATGAAGATATGATGCTC 59.247 42.308 0.07 0.00 0.00 4.26
3010 3372 1.207791 CACTTCTGGGGGCAGAGTAT 58.792 55.000 0.00 0.00 32.21 2.12
3104 3466 9.853555 TGTGTTGTTTTTCATGGATGATTATAC 57.146 29.630 0.00 0.00 36.56 1.47
3401 3971 4.333649 CGCACACAGATGGAGAAATATTGT 59.666 41.667 0.00 0.00 0.00 2.71
3528 4109 5.334724 AGCCTGATCACCATTTTCATTTC 57.665 39.130 0.00 0.00 0.00 2.17
3588 4169 8.894768 ATTATTAATGAGCTACCTGAAGACAC 57.105 34.615 0.00 0.00 0.00 3.67
3642 4223 4.640789 ACAGTGAGCAGCTATGTAGTAC 57.359 45.455 0.00 0.00 0.00 2.73
3676 4257 7.638444 TGAAATACTCCCTCCATTCACAAATA 58.362 34.615 0.00 0.00 0.00 1.40
3677 4258 8.281531 TGAAATACTCCCTCCATTCACAAATAT 58.718 33.333 0.00 0.00 0.00 1.28
3678 4259 9.793259 GAAATACTCCCTCCATTCACAAATATA 57.207 33.333 0.00 0.00 0.00 0.86
3680 4261 9.799106 AATACTCCCTCCATTCACAAATATAAG 57.201 33.333 0.00 0.00 0.00 1.73
3681 4262 7.451731 ACTCCCTCCATTCACAAATATAAGA 57.548 36.000 0.00 0.00 0.00 2.10
3683 4264 7.941238 ACTCCCTCCATTCACAAATATAAGATG 59.059 37.037 0.00 0.00 0.00 2.90
3686 4267 8.571336 CCCTCCATTCACAAATATAAGATGTTC 58.429 37.037 0.00 0.00 0.00 3.18
3687 4268 9.347240 CCTCCATTCACAAATATAAGATGTTCT 57.653 33.333 0.00 0.00 0.00 3.01
3714 4295 5.446143 TTTTTGCAAATCGGATGTACAGT 57.554 34.783 13.65 0.00 0.00 3.55
3718 4299 3.000041 GCAAATCGGATGTACAGTCACA 59.000 45.455 0.33 0.00 0.00 3.58
3724 4305 7.539712 AATCGGATGTACAGTCACATTTTAG 57.460 36.000 0.33 0.00 39.25 1.85
3738 4319 5.890334 CACATTTTAGTGTGTTGGTTCACT 58.110 37.500 0.00 0.00 43.43 3.41
3749 4330 4.576463 GTGTTGGTTCACTCATTTCAGTCT 59.424 41.667 0.00 0.00 35.68 3.24
3817 4398 6.781014 TGAACGGAGGGAGTATATCTTTACAT 59.219 38.462 0.00 0.00 0.00 2.29
3827 4408 8.790718 GGAGTATATCTTTACATCGGTGAACTA 58.209 37.037 0.65 0.00 0.00 2.24
3829 4410 9.128404 AGTATATCTTTACATCGGTGAACTACA 57.872 33.333 0.65 0.00 0.00 2.74
3840 4421 2.851263 TGAACTACACATGTCACCCC 57.149 50.000 0.00 0.00 0.00 4.95
3841 4422 2.050918 TGAACTACACATGTCACCCCA 58.949 47.619 0.00 0.00 0.00 4.96
3842 4423 2.038426 TGAACTACACATGTCACCCCAG 59.962 50.000 0.00 0.00 0.00 4.45
3843 4424 0.984230 ACTACACATGTCACCCCAGG 59.016 55.000 0.00 0.00 0.00 4.45
3844 4425 0.253044 CTACACATGTCACCCCAGGG 59.747 60.000 0.00 0.00 42.03 4.45
3856 4437 2.430248 CCCCAGGGTTGTAATACACC 57.570 55.000 4.22 0.00 0.00 4.16
3857 4438 1.636519 CCCCAGGGTTGTAATACACCA 59.363 52.381 4.22 0.00 0.00 4.17
3858 4439 2.041891 CCCCAGGGTTGTAATACACCAA 59.958 50.000 4.22 0.00 0.00 3.67
3859 4440 3.086282 CCCAGGGTTGTAATACACCAAC 58.914 50.000 0.00 0.00 40.12 3.77
3860 4441 3.245122 CCCAGGGTTGTAATACACCAACT 60.245 47.826 0.00 0.00 40.56 3.16
3861 4442 3.756434 CCAGGGTTGTAATACACCAACTG 59.244 47.826 11.93 8.73 40.56 3.16
3862 4443 4.505918 CCAGGGTTGTAATACACCAACTGA 60.506 45.833 11.38 0.00 40.56 3.41
3863 4444 4.695455 CAGGGTTGTAATACACCAACTGAG 59.305 45.833 11.93 0.00 40.56 3.35
3864 4445 4.595781 AGGGTTGTAATACACCAACTGAGA 59.404 41.667 11.93 0.00 40.56 3.27
3865 4446 5.072600 AGGGTTGTAATACACCAACTGAGAA 59.927 40.000 11.93 0.00 40.56 2.87
3866 4447 5.944007 GGGTTGTAATACACCAACTGAGAAT 59.056 40.000 11.93 0.00 40.56 2.40
3867 4448 7.037873 AGGGTTGTAATACACCAACTGAGAATA 60.038 37.037 11.93 0.00 40.56 1.75
3904 4486 7.327214 TGATTTTTGTCAACATAATTAGCCCC 58.673 34.615 0.00 0.00 0.00 5.80
3946 4528 0.252881 TGATGGAGAGGCCCAGTCTT 60.253 55.000 0.00 0.00 39.97 3.01
3960 4542 4.021368 GCCCAGTCTTAGTCTAGACAACAA 60.021 45.833 24.44 13.58 45.57 2.83
3986 4568 2.509845 GCTGTTGCAAGAAAAGGCG 58.490 52.632 0.00 0.00 39.41 5.52
3988 4570 1.480205 CTGTTGCAAGAAAAGGCGTG 58.520 50.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.386867 CTTCCCGCATGCAACTCGC 62.387 63.158 19.57 0.00 42.89 5.03
2 3 1.091771 ATCTTCCCGCATGCAACTCG 61.092 55.000 19.57 0.00 0.00 4.18
3 4 1.869767 CTATCTTCCCGCATGCAACTC 59.130 52.381 19.57 0.00 0.00 3.01
4 5 1.959042 CTATCTTCCCGCATGCAACT 58.041 50.000 19.57 0.00 0.00 3.16
5 6 0.308993 GCTATCTTCCCGCATGCAAC 59.691 55.000 19.57 0.00 0.00 4.17
6 7 1.159713 CGCTATCTTCCCGCATGCAA 61.160 55.000 19.57 3.43 0.00 4.08
7 8 1.595109 CGCTATCTTCCCGCATGCA 60.595 57.895 19.57 0.00 0.00 3.96
8 9 2.959357 GCGCTATCTTCCCGCATGC 61.959 63.158 7.91 7.91 46.32 4.06
9 10 3.248029 GCGCTATCTTCCCGCATG 58.752 61.111 0.00 0.00 46.32 4.06
13 14 3.843117 GACCGGCGCTATCTTCCCG 62.843 68.421 7.64 0.00 40.39 5.14
14 15 2.029221 GACCGGCGCTATCTTCCC 59.971 66.667 7.64 0.00 0.00 3.97
15 16 0.597898 GAAGACCGGCGCTATCTTCC 60.598 60.000 25.39 14.65 41.61 3.46
16 17 0.597898 GGAAGACCGGCGCTATCTTC 60.598 60.000 26.68 26.68 45.04 2.87
17 18 1.442148 GGAAGACCGGCGCTATCTT 59.558 57.895 17.33 17.33 35.39 2.40
18 19 2.499827 GGGAAGACCGGCGCTATCT 61.500 63.158 7.64 4.96 36.97 1.98
19 20 2.029221 GGGAAGACCGGCGCTATC 59.971 66.667 7.64 2.30 36.97 2.08
20 21 2.762459 TGGGAAGACCGGCGCTAT 60.762 61.111 7.64 0.00 44.64 2.97
21 22 3.458163 CTGGGAAGACCGGCGCTA 61.458 66.667 7.64 0.00 44.64 4.26
27 28 4.821589 GGCGAGCTGGGAAGACCG 62.822 72.222 0.00 0.00 44.64 4.79
28 29 4.475135 GGGCGAGCTGGGAAGACC 62.475 72.222 0.00 0.00 40.81 3.85
29 30 4.475135 GGGGCGAGCTGGGAAGAC 62.475 72.222 0.00 0.00 0.00 3.01
47 48 3.052082 CCTGAACCCAGCGTGCTG 61.052 66.667 14.82 14.82 43.26 4.41
50 51 3.052082 CAGCCTGAACCCAGCGTG 61.052 66.667 0.00 0.00 39.07 5.34
51 52 4.335647 CCAGCCTGAACCCAGCGT 62.336 66.667 0.00 0.00 39.07 5.07
53 54 3.635268 CTCCCAGCCTGAACCCAGC 62.635 68.421 0.00 0.00 39.07 4.85
54 55 2.673523 CTCCCAGCCTGAACCCAG 59.326 66.667 0.00 0.00 40.09 4.45
55 56 3.650950 GCTCCCAGCCTGAACCCA 61.651 66.667 0.00 0.00 34.48 4.51
56 57 4.785453 CGCTCCCAGCCTGAACCC 62.785 72.222 0.00 0.00 38.18 4.11
74 75 3.116531 GACCTCGTTTTCCGCCGG 61.117 66.667 0.00 0.00 36.19 6.13
75 76 1.666872 AAGACCTCGTTTTCCGCCG 60.667 57.895 0.00 0.00 36.19 6.46
76 77 1.574702 CCAAGACCTCGTTTTCCGCC 61.575 60.000 0.00 0.00 36.19 6.13
77 78 1.574702 CCCAAGACCTCGTTTTCCGC 61.575 60.000 0.00 0.00 36.19 5.54
78 79 1.574702 GCCCAAGACCTCGTTTTCCG 61.575 60.000 0.00 0.00 38.13 4.30
79 80 1.574702 CGCCCAAGACCTCGTTTTCC 61.575 60.000 0.00 0.00 0.00 3.13
80 81 1.866925 CGCCCAAGACCTCGTTTTC 59.133 57.895 0.00 0.00 0.00 2.29
81 82 2.258726 GCGCCCAAGACCTCGTTTT 61.259 57.895 0.00 0.00 0.00 2.43
82 83 2.668550 GCGCCCAAGACCTCGTTT 60.669 61.111 0.00 0.00 0.00 3.60
83 84 3.254024 ATGCGCCCAAGACCTCGTT 62.254 57.895 4.18 0.00 0.00 3.85
84 85 3.706373 ATGCGCCCAAGACCTCGT 61.706 61.111 4.18 0.00 0.00 4.18
85 86 3.197790 CATGCGCCCAAGACCTCG 61.198 66.667 4.18 0.00 0.00 4.63
86 87 2.825836 CCATGCGCCCAAGACCTC 60.826 66.667 4.18 0.00 0.00 3.85
89 90 3.818787 CAGCCATGCGCCCAAGAC 61.819 66.667 4.18 0.00 38.78 3.01
97 98 2.098426 AAAAACACCCCAGCCATGCG 62.098 55.000 0.00 0.00 0.00 4.73
98 99 1.754107 AAAAACACCCCAGCCATGC 59.246 52.632 0.00 0.00 0.00 4.06
119 120 2.288961 TTTTGCGCCGGTTGTAAAAA 57.711 40.000 17.55 12.09 29.84 1.94
120 121 2.288961 TTTTTGCGCCGGTTGTAAAA 57.711 40.000 16.48 16.48 0.00 1.52
138 139 1.425448 ACAGCCCAGCTAGGACTTTTT 59.575 47.619 0.85 0.00 41.22 1.94
139 140 1.068121 ACAGCCCAGCTAGGACTTTT 58.932 50.000 0.85 0.00 41.22 2.27
140 141 1.068121 AACAGCCCAGCTAGGACTTT 58.932 50.000 0.85 0.00 41.22 2.66
141 142 0.326264 CAACAGCCCAGCTAGGACTT 59.674 55.000 0.85 0.00 41.22 3.01
142 143 0.838122 ACAACAGCCCAGCTAGGACT 60.838 55.000 0.85 0.00 41.22 3.85
143 144 0.674895 CACAACAGCCCAGCTAGGAC 60.675 60.000 0.85 0.00 41.22 3.85
144 145 1.679311 CACAACAGCCCAGCTAGGA 59.321 57.895 0.85 0.00 41.22 2.94
145 146 1.377725 CCACAACAGCCCAGCTAGG 60.378 63.158 0.00 0.00 36.40 3.02
146 147 1.377725 CCCACAACAGCCCAGCTAG 60.378 63.158 0.00 0.00 36.40 3.42
147 148 2.756400 CCCACAACAGCCCAGCTA 59.244 61.111 0.00 0.00 36.40 3.32
148 149 4.290622 CCCCACAACAGCCCAGCT 62.291 66.667 0.00 0.00 40.77 4.24
155 156 3.294493 CAACCGCCCCCACAACAG 61.294 66.667 0.00 0.00 0.00 3.16
156 157 4.904590 CCAACCGCCCCCACAACA 62.905 66.667 0.00 0.00 0.00 3.33
157 158 4.589675 TCCAACCGCCCCCACAAC 62.590 66.667 0.00 0.00 0.00 3.32
158 159 4.278513 CTCCAACCGCCCCCACAA 62.279 66.667 0.00 0.00 0.00 3.33
160 161 3.728373 ATCTCCAACCGCCCCCAC 61.728 66.667 0.00 0.00 0.00 4.61
161 162 3.727258 CATCTCCAACCGCCCCCA 61.727 66.667 0.00 0.00 0.00 4.96
163 164 2.056906 ATAGCATCTCCAACCGCCCC 62.057 60.000 0.00 0.00 0.00 5.80
164 165 0.179018 AATAGCATCTCCAACCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
165 166 0.947244 CAATAGCATCTCCAACCGCC 59.053 55.000 0.00 0.00 0.00 6.13
166 167 1.869767 CTCAATAGCATCTCCAACCGC 59.130 52.381 0.00 0.00 0.00 5.68
167 168 2.158900 ACCTCAATAGCATCTCCAACCG 60.159 50.000 0.00 0.00 0.00 4.44
168 169 3.567478 ACCTCAATAGCATCTCCAACC 57.433 47.619 0.00 0.00 0.00 3.77
169 170 5.880332 TGTTTACCTCAATAGCATCTCCAAC 59.120 40.000 0.00 0.00 0.00 3.77
170 171 6.061022 TGTTTACCTCAATAGCATCTCCAA 57.939 37.500 0.00 0.00 0.00 3.53
171 172 5.692115 TGTTTACCTCAATAGCATCTCCA 57.308 39.130 0.00 0.00 0.00 3.86
172 173 5.008118 GCTTGTTTACCTCAATAGCATCTCC 59.992 44.000 0.00 0.00 0.00 3.71
173 174 5.008118 GGCTTGTTTACCTCAATAGCATCTC 59.992 44.000 0.00 0.00 0.00 2.75
174 175 4.884164 GGCTTGTTTACCTCAATAGCATCT 59.116 41.667 0.00 0.00 0.00 2.90
175 176 4.884164 AGGCTTGTTTACCTCAATAGCATC 59.116 41.667 0.00 0.00 0.00 3.91
176 177 4.860022 AGGCTTGTTTACCTCAATAGCAT 58.140 39.130 0.00 0.00 0.00 3.79
177 178 4.301072 AGGCTTGTTTACCTCAATAGCA 57.699 40.909 0.00 0.00 0.00 3.49
178 179 4.201822 CGAAGGCTTGTTTACCTCAATAGC 60.202 45.833 3.46 0.00 34.31 2.97
179 180 4.201822 GCGAAGGCTTGTTTACCTCAATAG 60.202 45.833 3.46 0.00 34.31 1.73
180 181 3.687698 GCGAAGGCTTGTTTACCTCAATA 59.312 43.478 3.46 0.00 34.31 1.90
181 182 2.488153 GCGAAGGCTTGTTTACCTCAAT 59.512 45.455 3.46 0.00 34.31 2.57
182 183 1.877443 GCGAAGGCTTGTTTACCTCAA 59.123 47.619 3.46 0.00 34.31 3.02
183 184 1.519408 GCGAAGGCTTGTTTACCTCA 58.481 50.000 3.46 0.00 34.31 3.86
196 197 3.121030 CGGCCTGTCAAGCGAAGG 61.121 66.667 0.00 0.00 0.00 3.46
197 198 1.901650 GAACGGCCTGTCAAGCGAAG 61.902 60.000 0.00 0.00 0.00 3.79
198 199 1.959226 GAACGGCCTGTCAAGCGAA 60.959 57.895 0.00 0.00 0.00 4.70
199 200 2.357034 GAACGGCCTGTCAAGCGA 60.357 61.111 0.00 0.00 0.00 4.93
200 201 2.357517 AGAACGGCCTGTCAAGCG 60.358 61.111 0.00 0.00 0.00 4.68
201 202 2.328099 CCAGAACGGCCTGTCAAGC 61.328 63.158 0.00 0.00 32.43 4.01
202 203 1.672356 CCCAGAACGGCCTGTCAAG 60.672 63.158 0.00 0.00 32.43 3.02
203 204 2.429930 CCCAGAACGGCCTGTCAA 59.570 61.111 0.00 0.00 32.43 3.18
204 205 4.329545 GCCCAGAACGGCCTGTCA 62.330 66.667 0.00 0.00 43.66 3.58
211 212 3.443045 GTGCATGGCCCAGAACGG 61.443 66.667 0.00 0.00 0.00 4.44
212 213 3.803082 CGTGCATGGCCCAGAACG 61.803 66.667 10.28 10.28 0.00 3.95
213 214 1.523154 TTTCGTGCATGGCCCAGAAC 61.523 55.000 5.98 0.00 0.00 3.01
214 215 0.611618 ATTTCGTGCATGGCCCAGAA 60.612 50.000 5.98 0.00 0.00 3.02
215 216 0.611618 AATTTCGTGCATGGCCCAGA 60.612 50.000 5.98 0.00 0.00 3.86
216 217 0.247185 AAATTTCGTGCATGGCCCAG 59.753 50.000 5.98 0.00 0.00 4.45
217 218 1.476085 CTAAATTTCGTGCATGGCCCA 59.524 47.619 5.98 0.00 0.00 5.36
218 219 1.748493 TCTAAATTTCGTGCATGGCCC 59.252 47.619 5.98 0.00 0.00 5.80
219 220 2.796032 GCTCTAAATTTCGTGCATGGCC 60.796 50.000 5.98 0.00 0.00 5.36
220 221 2.159393 TGCTCTAAATTTCGTGCATGGC 60.159 45.455 13.50 0.00 0.00 4.40
221 222 3.763097 TGCTCTAAATTTCGTGCATGG 57.237 42.857 13.50 0.00 0.00 3.66
222 223 5.575957 AGATTGCTCTAAATTTCGTGCATG 58.424 37.500 16.94 0.00 30.89 4.06
223 224 5.824904 AGATTGCTCTAAATTTCGTGCAT 57.175 34.783 16.94 9.53 30.89 3.96
224 225 5.874810 AGTAGATTGCTCTAAATTTCGTGCA 59.125 36.000 13.50 13.50 35.76 4.57
225 226 6.183360 ACAGTAGATTGCTCTAAATTTCGTGC 60.183 38.462 9.18 9.18 35.76 5.34
226 227 7.295952 ACAGTAGATTGCTCTAAATTTCGTG 57.704 36.000 0.00 0.00 35.76 4.35
227 228 8.467598 TCTACAGTAGATTGCTCTAAATTTCGT 58.532 33.333 6.15 0.00 35.76 3.85
228 229 8.858003 TCTACAGTAGATTGCTCTAAATTTCG 57.142 34.615 6.15 0.00 35.76 3.46
229 230 9.810545 ACTCTACAGTAGATTGCTCTAAATTTC 57.189 33.333 10.88 0.00 35.76 2.17
230 231 9.593134 CACTCTACAGTAGATTGCTCTAAATTT 57.407 33.333 10.88 0.00 35.76 1.82
231 232 8.754080 ACACTCTACAGTAGATTGCTCTAAATT 58.246 33.333 22.06 3.62 38.58 1.82
232 233 8.194104 CACACTCTACAGTAGATTGCTCTAAAT 58.806 37.037 22.06 4.21 38.58 1.40
233 234 7.176865 ACACACTCTACAGTAGATTGCTCTAAA 59.823 37.037 22.06 0.00 38.58 1.85
234 235 6.659668 ACACACTCTACAGTAGATTGCTCTAA 59.340 38.462 22.06 0.00 38.58 2.10
235 236 6.094186 CACACACTCTACAGTAGATTGCTCTA 59.906 42.308 22.06 0.00 38.58 2.43
236 237 5.013547 ACACACTCTACAGTAGATTGCTCT 58.986 41.667 22.06 5.97 38.58 4.09
237 238 5.098893 CACACACTCTACAGTAGATTGCTC 58.901 45.833 22.06 0.00 38.58 4.26
238 239 4.081972 CCACACACTCTACAGTAGATTGCT 60.082 45.833 22.06 10.76 38.58 3.91
239 240 4.177026 CCACACACTCTACAGTAGATTGC 58.823 47.826 22.06 0.00 38.58 3.56
240 241 4.220821 ACCCACACACTCTACAGTAGATTG 59.779 45.833 21.01 21.01 40.22 2.67
241 242 4.417437 ACCCACACACTCTACAGTAGATT 58.583 43.478 10.88 2.57 33.66 2.40
242 243 4.048970 ACCCACACACTCTACAGTAGAT 57.951 45.455 10.88 0.00 33.66 1.98
243 244 3.520691 ACCCACACACTCTACAGTAGA 57.479 47.619 10.02 10.02 0.00 2.59
244 245 4.156190 CACTACCCACACACTCTACAGTAG 59.844 50.000 0.47 0.47 33.75 2.57
245 246 4.077108 CACTACCCACACACTCTACAGTA 58.923 47.826 0.00 0.00 0.00 2.74
246 247 2.891580 CACTACCCACACACTCTACAGT 59.108 50.000 0.00 0.00 0.00 3.55
247 248 2.231478 CCACTACCCACACACTCTACAG 59.769 54.545 0.00 0.00 0.00 2.74
248 249 2.244695 CCACTACCCACACACTCTACA 58.755 52.381 0.00 0.00 0.00 2.74
249 250 2.245582 ACCACTACCCACACACTCTAC 58.754 52.381 0.00 0.00 0.00 2.59
250 251 2.688902 ACCACTACCCACACACTCTA 57.311 50.000 0.00 0.00 0.00 2.43
251 252 2.526432 CTACCACTACCCACACACTCT 58.474 52.381 0.00 0.00 0.00 3.24
252 253 1.067071 GCTACCACTACCCACACACTC 60.067 57.143 0.00 0.00 0.00 3.51
253 254 0.974383 GCTACCACTACCCACACACT 59.026 55.000 0.00 0.00 0.00 3.55
254 255 0.036671 GGCTACCACTACCCACACAC 60.037 60.000 0.00 0.00 0.00 3.82
255 256 0.472161 TGGCTACCACTACCCACACA 60.472 55.000 0.00 0.00 0.00 3.72
256 257 2.368591 TGGCTACCACTACCCACAC 58.631 57.895 0.00 0.00 0.00 3.82
257 258 4.980133 TGGCTACCACTACCCACA 57.020 55.556 0.00 0.00 0.00 4.17
266 267 0.325296 ATTCCTCCTCGTGGCTACCA 60.325 55.000 0.00 0.00 0.00 3.25
267 268 1.614413 CTATTCCTCCTCGTGGCTACC 59.386 57.143 0.00 0.00 0.00 3.18
268 269 1.614413 CCTATTCCTCCTCGTGGCTAC 59.386 57.143 0.00 0.00 0.00 3.58
269 270 1.497716 TCCTATTCCTCCTCGTGGCTA 59.502 52.381 0.00 0.00 0.00 3.93
270 271 0.261991 TCCTATTCCTCCTCGTGGCT 59.738 55.000 0.00 0.00 0.00 4.75
271 272 1.120530 TTCCTATTCCTCCTCGTGGC 58.879 55.000 0.00 0.00 0.00 5.01
272 273 2.700897 ACATTCCTATTCCTCCTCGTGG 59.299 50.000 0.00 0.00 0.00 4.94
273 274 3.551046 CGACATTCCTATTCCTCCTCGTG 60.551 52.174 0.00 0.00 0.00 4.35
274 275 2.623889 CGACATTCCTATTCCTCCTCGT 59.376 50.000 0.00 0.00 0.00 4.18
275 276 2.623889 ACGACATTCCTATTCCTCCTCG 59.376 50.000 0.00 0.00 0.00 4.63
276 277 3.304794 CGACGACATTCCTATTCCTCCTC 60.305 52.174 0.00 0.00 0.00 3.71
277 278 2.623889 CGACGACATTCCTATTCCTCCT 59.376 50.000 0.00 0.00 0.00 3.69
278 279 2.288273 CCGACGACATTCCTATTCCTCC 60.288 54.545 0.00 0.00 0.00 4.30
279 280 2.862921 GCCGACGACATTCCTATTCCTC 60.863 54.545 0.00 0.00 0.00 3.71
280 281 1.068741 GCCGACGACATTCCTATTCCT 59.931 52.381 0.00 0.00 0.00 3.36
281 282 1.499049 GCCGACGACATTCCTATTCC 58.501 55.000 0.00 0.00 0.00 3.01
282 283 1.129326 CGCCGACGACATTCCTATTC 58.871 55.000 0.00 0.00 43.93 1.75
283 284 0.458669 ACGCCGACGACATTCCTATT 59.541 50.000 0.00 0.00 43.93 1.73
284 285 0.030369 GACGCCGACGACATTCCTAT 59.970 55.000 0.00 0.00 43.93 2.57
285 286 1.430632 GACGCCGACGACATTCCTA 59.569 57.895 0.00 0.00 43.93 2.94
331 340 9.967245 GCACGTTTTTCTTTCTTTCTTTAAATT 57.033 25.926 0.00 0.00 0.00 1.82
332 341 8.600625 GGCACGTTTTTCTTTCTTTCTTTAAAT 58.399 29.630 0.00 0.00 0.00 1.40
333 342 7.955502 GGCACGTTTTTCTTTCTTTCTTTAAA 58.044 30.769 0.00 0.00 0.00 1.52
417 432 8.870116 AGTGGCTTTCCTTTGTTTTTAGATTAT 58.130 29.630 0.00 0.00 0.00 1.28
418 433 8.141268 CAGTGGCTTTCCTTTGTTTTTAGATTA 58.859 33.333 0.00 0.00 0.00 1.75
497 512 2.717580 TCAGCTTGCTTGCTTGATTG 57.282 45.000 1.40 0.00 41.98 2.67
501 516 2.058798 CAACATCAGCTTGCTTGCTTG 58.941 47.619 1.40 2.33 41.98 4.01
502 517 1.604693 GCAACATCAGCTTGCTTGCTT 60.605 47.619 13.71 0.00 41.98 3.91
504 519 1.012486 GGCAACATCAGCTTGCTTGC 61.012 55.000 7.24 10.75 43.08 4.01
561 767 2.546789 CGGACACTTGGACTTGGTTAAC 59.453 50.000 0.00 0.00 0.00 2.01
627 836 2.247637 GGTGGAAAAATAAAGCGACGC 58.752 47.619 13.03 13.03 0.00 5.19
649 862 0.865769 CTAGCCACGTCGTGCTTTTT 59.134 50.000 20.01 5.39 31.34 1.94
650 863 0.249741 ACTAGCCACGTCGTGCTTTT 60.250 50.000 20.01 7.06 31.34 2.27
751 972 4.366684 GAGGTTGGGCTGTGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
752 973 4.366684 GGAGGTTGGGCTGTGGGG 62.367 72.222 0.00 0.00 0.00 4.96
756 977 3.580319 GTGGGGAGGTTGGGCTGT 61.580 66.667 0.00 0.00 0.00 4.40
767 988 2.352422 GATGCAGTGCAGTGGGGA 59.648 61.111 24.20 0.00 43.65 4.81
769 990 3.129502 CCGATGCAGTGCAGTGGG 61.130 66.667 24.20 18.97 43.65 4.61
842 1078 2.440430 CGGAGGAGAGGAAGGCGA 60.440 66.667 0.00 0.00 0.00 5.54
843 1079 4.214327 GCGGAGGAGAGGAAGGCG 62.214 72.222 0.00 0.00 0.00 5.52
844 1080 3.077556 TGCGGAGGAGAGGAAGGC 61.078 66.667 0.00 0.00 0.00 4.35
847 1131 2.035155 TCGTGCGGAGGAGAGGAA 59.965 61.111 0.00 0.00 0.00 3.36
864 1150 0.740737 GCGGATGGCTTTTATGCACT 59.259 50.000 0.00 0.00 39.11 4.40
921 1208 1.063469 GTGTATGGAAATTGGCGACGG 59.937 52.381 0.00 0.00 0.00 4.79
927 1214 4.862902 TGTGTTGGTGTATGGAAATTGG 57.137 40.909 0.00 0.00 0.00 3.16
929 1216 7.615365 AGATGTATGTGTTGGTGTATGGAAATT 59.385 33.333 0.00 0.00 0.00 1.82
930 1217 7.118723 AGATGTATGTGTTGGTGTATGGAAAT 58.881 34.615 0.00 0.00 0.00 2.17
931 1218 6.480763 AGATGTATGTGTTGGTGTATGGAAA 58.519 36.000 0.00 0.00 0.00 3.13
932 1219 6.061022 AGATGTATGTGTTGGTGTATGGAA 57.939 37.500 0.00 0.00 0.00 3.53
933 1220 5.396324 GGAGATGTATGTGTTGGTGTATGGA 60.396 44.000 0.00 0.00 0.00 3.41
935 1222 4.816385 GGGAGATGTATGTGTTGGTGTATG 59.184 45.833 0.00 0.00 0.00 2.39
936 1223 4.141482 GGGGAGATGTATGTGTTGGTGTAT 60.141 45.833 0.00 0.00 0.00 2.29
937 1224 3.199071 GGGGAGATGTATGTGTTGGTGTA 59.801 47.826 0.00 0.00 0.00 2.90
938 1225 2.026262 GGGGAGATGTATGTGTTGGTGT 60.026 50.000 0.00 0.00 0.00 4.16
941 1228 1.484653 TCGGGGAGATGTATGTGTTGG 59.515 52.381 0.00 0.00 0.00 3.77
950 1238 2.417516 CGCGATTCGGGGAGATGT 59.582 61.111 14.70 0.00 36.19 3.06
982 1270 0.863144 ATTTCGTTTCGTCCGGTGTG 59.137 50.000 0.00 0.00 0.00 3.82
983 1271 0.863144 CATTTCGTTTCGTCCGGTGT 59.137 50.000 0.00 0.00 0.00 4.16
992 1290 0.518559 GAGCGTCGCCATTTCGTTTC 60.519 55.000 14.86 0.00 0.00 2.78
993 1291 0.949105 AGAGCGTCGCCATTTCGTTT 60.949 50.000 14.86 0.00 0.00 3.60
994 1292 1.352156 GAGAGCGTCGCCATTTCGTT 61.352 55.000 14.86 0.00 0.00 3.85
1273 1571 0.831711 GATCAGGAGAGGGGGAGAGC 60.832 65.000 0.00 0.00 0.00 4.09
1285 1585 3.083349 CCAGGCACCGGATCAGGA 61.083 66.667 19.55 0.00 34.73 3.86
1549 1849 1.309499 AAGAGAGGAGAGGCGTGACG 61.309 60.000 0.00 0.00 0.00 4.35
1582 1890 1.661112 GATCCACTTTTTCTCGAGCGG 59.339 52.381 7.81 0.00 0.00 5.52
1611 1919 6.991938 TGTCTGGAGATTTTGTAAATTTGGG 58.008 36.000 0.00 0.00 0.00 4.12
1721 2048 9.746711 CGTATGTTTGTTGAAATCTCTAGAAAG 57.253 33.333 0.00 0.00 0.00 2.62
1722 2049 8.717821 CCGTATGTTTGTTGAAATCTCTAGAAA 58.282 33.333 0.00 0.00 0.00 2.52
1723 2050 8.092068 TCCGTATGTTTGTTGAAATCTCTAGAA 58.908 33.333 0.00 0.00 0.00 2.10
1724 2051 7.608153 TCCGTATGTTTGTTGAAATCTCTAGA 58.392 34.615 0.00 0.00 0.00 2.43
1726 2053 7.383687 ACTCCGTATGTTTGTTGAAATCTCTA 58.616 34.615 0.00 0.00 0.00 2.43
1728 2055 6.481954 ACTCCGTATGTTTGTTGAAATCTC 57.518 37.500 0.00 0.00 0.00 2.75
1729 2056 9.095065 GTATACTCCGTATGTTTGTTGAAATCT 57.905 33.333 0.00 0.00 30.79 2.40
1732 2059 8.780846 ATGTATACTCCGTATGTTTGTTGAAA 57.219 30.769 4.17 0.00 30.79 2.69
1734 2061 6.982141 GGATGTATACTCCGTATGTTTGTTGA 59.018 38.462 4.17 0.00 30.79 3.18
1735 2062 7.173863 GGATGTATACTCCGTATGTTTGTTG 57.826 40.000 4.17 0.00 30.79 3.33
1747 2074 5.709164 ACTACCACATACGGATGTATACTCC 59.291 44.000 14.23 7.70 44.82 3.85
1748 2075 6.128063 GGACTACCACATACGGATGTATACTC 60.128 46.154 14.23 7.46 44.82 2.59
1749 2076 5.709164 GGACTACCACATACGGATGTATACT 59.291 44.000 14.23 0.00 44.82 2.12
1789 2144 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1876 2232 9.178758 GGGATGTAGAGTAACATGAAAGAAAAT 57.821 33.333 0.00 0.00 40.17 1.82
1956 2312 7.554118 CACCATGACACCTTAACTGAAGAATAT 59.446 37.037 0.00 0.00 37.33 1.28
1957 2313 6.878923 CACCATGACACCTTAACTGAAGAATA 59.121 38.462 0.00 0.00 37.33 1.75
1998 2357 4.533815 AGATCTGGATAAGTACCACGTCA 58.466 43.478 0.00 0.00 33.57 4.35
2005 2364 9.012161 ACCGTCTTATTAGATCTGGATAAGTAC 57.988 37.037 24.85 21.30 35.73 2.73
2030 2389 8.699283 AGGAGTACGTATTTCAGAATTGTAAC 57.301 34.615 0.00 0.00 0.00 2.50
2045 2404 4.158949 TGAGCAGCAATTAAGGAGTACGTA 59.841 41.667 0.00 0.00 0.00 3.57
2046 2405 3.056107 TGAGCAGCAATTAAGGAGTACGT 60.056 43.478 0.00 0.00 0.00 3.57
2047 2406 3.521560 TGAGCAGCAATTAAGGAGTACG 58.478 45.455 0.00 0.00 0.00 3.67
2048 2407 5.118990 TCATGAGCAGCAATTAAGGAGTAC 58.881 41.667 0.00 0.00 0.00 2.73
2067 2429 0.037303 AGGGACTGCTGGTGTTCATG 59.963 55.000 0.00 0.00 37.18 3.07
2100 2462 6.149973 CACCAGAAGCTGACATGAAGAAATAA 59.850 38.462 0.00 0.00 32.44 1.40
2112 2474 0.036022 AAGAGGCACCAGAAGCTGAC 59.964 55.000 0.00 0.00 32.44 3.51
2120 2482 1.639298 GCGCTTACAAGAGGCACCAG 61.639 60.000 0.00 0.00 0.00 4.00
2155 2517 1.183030 ACGATGTGTTCACCTCCGGA 61.183 55.000 2.93 2.93 0.00 5.14
2317 2679 6.381498 TGTGATTTTACCTTAGTGATGGGA 57.619 37.500 0.00 0.00 0.00 4.37
2337 2699 3.679389 AGCAAGGAGGTGAATAGTTGTG 58.321 45.455 0.00 0.00 0.00 3.33
2378 2740 4.935352 TTGTCTTCATGGTTTGAAAGGG 57.065 40.909 0.00 0.00 43.64 3.95
2409 2771 3.489180 AGATCGGTGTTCTCGTTGTAG 57.511 47.619 0.00 0.00 0.00 2.74
2416 2778 2.535984 CGCAACATAGATCGGTGTTCTC 59.464 50.000 13.59 9.12 36.48 2.87
2425 2787 2.348666 ACTCAAACGCGCAACATAGATC 59.651 45.455 5.73 0.00 0.00 2.75
2486 2848 8.885494 ACCAAATTCATCATTCTTTTCGAAAA 57.115 26.923 21.35 21.35 34.79 2.29
2513 2875 2.032030 CAGTTTTCTGTTACCAGTGCCG 60.032 50.000 0.00 0.00 42.48 5.69
2601 2963 9.961265 TTATCGACGTATAATCATTTGAACTCT 57.039 29.630 0.00 0.00 0.00 3.24
2645 3007 4.191544 TCCTGAAACTGTCAAGTGTGAAG 58.808 43.478 0.00 0.00 36.51 3.02
2646 3008 4.081142 TCTCCTGAAACTGTCAAGTGTGAA 60.081 41.667 0.00 0.00 36.51 3.18
2647 3009 3.450817 TCTCCTGAAACTGTCAAGTGTGA 59.549 43.478 0.00 0.00 36.51 3.58
2648 3010 3.557595 GTCTCCTGAAACTGTCAAGTGTG 59.442 47.826 0.00 0.00 36.51 3.82
2649 3011 3.197766 TGTCTCCTGAAACTGTCAAGTGT 59.802 43.478 0.00 0.00 36.51 3.55
2650 3012 3.797039 TGTCTCCTGAAACTGTCAAGTG 58.203 45.455 0.00 0.00 36.51 3.16
2651 3013 4.696479 ATGTCTCCTGAAACTGTCAAGT 57.304 40.909 0.00 0.00 38.71 3.16
2699 3061 5.392380 GGTCCTGTTAGTGATCAGCAAAATG 60.392 44.000 0.00 0.00 0.00 2.32
2989 3351 3.965539 CTCTGCCCCCAGAAGTGCG 62.966 68.421 0.00 0.00 46.84 5.34
3266 3680 0.034089 CCAAGGTCATTCCACTCCCC 60.034 60.000 0.00 0.00 39.02 4.81
3328 3742 0.040646 GGTTTTAGGGGTTCAGGGGG 59.959 60.000 0.00 0.00 0.00 5.40
3401 3971 6.253758 TGCGGATTAGGATAGGAGAGATTAA 58.746 40.000 0.00 0.00 0.00 1.40
3492 4063 1.843851 TCAGGCTCGGAATGGGTATTT 59.156 47.619 0.00 0.00 0.00 1.40
3528 4109 2.364647 GACGTAGGTTTAGATCCCTGGG 59.635 54.545 6.33 6.33 32.08 4.45
3588 4169 5.823045 GTGAAGGGATTACTATCCTTTGTGG 59.177 44.000 6.30 0.00 46.83 4.17
3642 4223 5.303589 TGGAGGGAGTATTTCATAAGGTACG 59.696 44.000 0.00 0.00 0.00 3.67
3660 4241 8.469309 AACATCTTATATTTGTGAATGGAGGG 57.531 34.615 0.00 0.00 0.00 4.30
3692 4273 5.009110 TGACTGTACATCCGATTTGCAAAAA 59.991 36.000 17.19 2.72 0.00 1.94
3693 4274 4.517075 TGACTGTACATCCGATTTGCAAAA 59.483 37.500 17.19 0.00 0.00 2.44
3695 4276 3.435327 GTGACTGTACATCCGATTTGCAA 59.565 43.478 0.00 0.00 0.00 4.08
3697 4278 3.000041 TGTGACTGTACATCCGATTTGC 59.000 45.455 0.00 0.00 0.00 3.68
3698 4279 5.801350 AATGTGACTGTACATCCGATTTG 57.199 39.130 0.00 0.00 40.24 2.32
3699 4280 6.817765 AAAATGTGACTGTACATCCGATTT 57.182 33.333 0.00 2.06 40.24 2.17
3700 4281 7.064609 CACTAAAATGTGACTGTACATCCGATT 59.935 37.037 0.00 0.00 40.24 3.34
3701 4282 6.535150 CACTAAAATGTGACTGTACATCCGAT 59.465 38.462 0.00 0.00 40.24 4.18
3702 4283 5.867174 CACTAAAATGTGACTGTACATCCGA 59.133 40.000 0.00 0.00 40.24 4.55
3703 4284 5.637810 ACACTAAAATGTGACTGTACATCCG 59.362 40.000 0.00 0.00 40.24 4.18
3718 4299 6.959639 ATGAGTGAACCAACACACTAAAAT 57.040 33.333 0.00 0.00 45.54 1.82
3724 4305 4.096382 ACTGAAATGAGTGAACCAACACAC 59.904 41.667 0.00 0.00 42.45 3.82
3731 4312 7.440523 AAATACAGACTGAAATGAGTGAACC 57.559 36.000 10.08 0.00 0.00 3.62
3735 4316 7.819415 TGGACTAAATACAGACTGAAATGAGTG 59.181 37.037 10.08 0.00 0.00 3.51
3779 4360 7.289317 ACTCCCTCCGTTCACAAATATAGATAA 59.711 37.037 0.00 0.00 0.00 1.75
3790 4371 4.180377 AGATATACTCCCTCCGTTCACA 57.820 45.455 0.00 0.00 0.00 3.58
3817 4398 2.288579 GGTGACATGTGTAGTTCACCGA 60.289 50.000 14.30 0.00 45.61 4.69
3827 4408 3.170362 CCCTGGGGTGACATGTGT 58.830 61.111 1.15 0.00 0.00 3.72
3837 4418 1.636519 TGGTGTATTACAACCCTGGGG 59.363 52.381 18.88 7.87 34.14 4.96
3838 4419 3.086282 GTTGGTGTATTACAACCCTGGG 58.914 50.000 12.28 12.28 40.71 4.45
3839 4420 3.756434 CAGTTGGTGTATTACAACCCTGG 59.244 47.826 15.67 0.00 46.07 4.45
3840 4421 4.647611 TCAGTTGGTGTATTACAACCCTG 58.352 43.478 16.68 16.68 46.07 4.45
3841 4422 4.595781 TCTCAGTTGGTGTATTACAACCCT 59.404 41.667 9.33 2.82 46.07 4.34
3842 4423 4.901868 TCTCAGTTGGTGTATTACAACCC 58.098 43.478 9.33 3.29 46.07 4.11
3843 4424 8.556213 TTATTCTCAGTTGGTGTATTACAACC 57.444 34.615 9.33 8.50 46.07 3.77
3844 4425 8.665685 CCTTATTCTCAGTTGGTGTATTACAAC 58.334 37.037 4.86 4.86 45.45 3.32
3845 4426 8.598916 TCCTTATTCTCAGTTGGTGTATTACAA 58.401 33.333 0.00 0.00 0.00 2.41
3846 4427 8.141298 TCCTTATTCTCAGTTGGTGTATTACA 57.859 34.615 0.00 0.00 0.00 2.41
3847 4428 8.258708 ACTCCTTATTCTCAGTTGGTGTATTAC 58.741 37.037 0.00 0.00 0.00 1.89
3848 4429 8.375493 ACTCCTTATTCTCAGTTGGTGTATTA 57.625 34.615 0.00 0.00 0.00 0.98
3849 4430 7.259088 ACTCCTTATTCTCAGTTGGTGTATT 57.741 36.000 0.00 0.00 0.00 1.89
3850 4431 6.875972 ACTCCTTATTCTCAGTTGGTGTAT 57.124 37.500 0.00 0.00 0.00 2.29
3851 4432 7.453752 AGTTACTCCTTATTCTCAGTTGGTGTA 59.546 37.037 0.00 0.00 0.00 2.90
3852 4433 6.270231 AGTTACTCCTTATTCTCAGTTGGTGT 59.730 38.462 0.00 0.00 0.00 4.16
3853 4434 6.702329 AGTTACTCCTTATTCTCAGTTGGTG 58.298 40.000 0.00 0.00 0.00 4.17
3854 4435 6.936968 AGTTACTCCTTATTCTCAGTTGGT 57.063 37.500 0.00 0.00 0.00 3.67
3855 4436 8.696374 TCATAGTTACTCCTTATTCTCAGTTGG 58.304 37.037 0.00 0.00 0.00 3.77
3867 4448 9.349713 TGTTGACAAAAATCATAGTTACTCCTT 57.650 29.630 0.00 0.00 0.00 3.36
3946 4528 3.130516 CAGGGCGATTGTTGTCTAGACTA 59.869 47.826 23.01 13.60 0.00 2.59
3960 4542 2.282391 TTGCAACAGCAGGGCGAT 60.282 55.556 0.00 0.00 39.82 4.58
3986 4568 2.268298 CCGTACATACTCTGTTGCCAC 58.732 52.381 0.00 0.00 39.39 5.01
3988 4570 2.667473 ACCGTACATACTCTGTTGCC 57.333 50.000 0.00 0.00 39.39 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.