Multiple sequence alignment - TraesCS6D01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G279400 chr6D 100.000 4589 0 0 1 4589 387647781 387652369 0.000000e+00 8475.0
1 TraesCS6D01G279400 chr6D 89.655 290 9 8 2544 2812 387650264 387650553 2.630000e-92 350.0
2 TraesCS6D01G279400 chr6D 89.655 290 9 8 2484 2773 387650324 387650592 2.630000e-92 350.0
3 TraesCS6D01G279400 chr6D 99.200 125 1 0 2604 2728 387650264 387650388 4.620000e-55 226.0
4 TraesCS6D01G279400 chr6D 99.200 125 1 0 2484 2608 387650384 387650508 4.620000e-55 226.0
5 TraesCS6D01G279400 chr6D 78.571 406 39 27 2166 2547 387723431 387723812 1.660000e-54 224.0
6 TraesCS6D01G279400 chr6D 75.108 462 62 31 2664 3082 387723749 387724200 2.840000e-37 167.0
7 TraesCS6D01G279400 chr6D 75.597 377 63 18 2175 2550 387729060 387729408 4.750000e-35 159.0
8 TraesCS6D01G279400 chr6D 100.000 65 0 0 2664 2728 387650264 387650328 2.240000e-23 121.0
9 TraesCS6D01G279400 chr6D 100.000 65 0 0 2484 2548 387650444 387650508 2.240000e-23 121.0
10 TraesCS6D01G279400 chr6D 76.170 235 25 18 2604 2829 387723749 387723961 1.360000e-15 95.3
11 TraesCS6D01G279400 chr6D 89.062 64 7 0 2544 2607 387723749 387723812 3.810000e-11 80.5
12 TraesCS6D01G279400 chr6B 86.302 1409 99 45 679 2022 578555138 578556517 0.000000e+00 1447.0
13 TraesCS6D01G279400 chr6B 91.867 541 25 7 3009 3541 578557738 578558267 0.000000e+00 737.0
14 TraesCS6D01G279400 chr6B 90.486 473 14 13 2022 2490 578556939 578557384 3.060000e-166 595.0
15 TraesCS6D01G279400 chr6B 82.166 785 54 29 3823 4587 578658430 578657712 3.060000e-166 595.0
16 TraesCS6D01G279400 chr6B 87.579 475 41 11 2657 3122 578557350 578557815 6.760000e-148 534.0
17 TraesCS6D01G279400 chr6B 80.151 398 57 14 3706 4097 578638368 578638749 1.260000e-70 278.0
18 TraesCS6D01G279400 chr6B 75.467 428 58 33 1020 1437 578679051 578679441 1.020000e-36 165.0
19 TraesCS6D01G279400 chr6B 82.564 195 20 6 2178 2365 578744984 578745171 4.750000e-35 159.0
20 TraesCS6D01G279400 chr6B 86.620 142 8 7 3531 3668 578558293 578558427 3.700000e-31 147.0
21 TraesCS6D01G279400 chr6B 86.207 87 11 1 251 337 578651594 578651509 4.890000e-15 93.5
22 TraesCS6D01G279400 chr6B 86.905 84 5 3 1098 1178 578744879 578744959 6.320000e-14 89.8
23 TraesCS6D01G279400 chr6B 95.238 42 1 1 543 583 578521159 578521200 1.070000e-06 65.8
24 TraesCS6D01G279400 chr6A 87.790 1294 79 37 780 2022 532656704 532657969 0.000000e+00 1441.0
25 TraesCS6D01G279400 chr6A 88.536 1038 41 21 2664 3654 532659054 532660060 0.000000e+00 1186.0
26 TraesCS6D01G279400 chr6A 83.806 988 53 32 3644 4587 532660450 532661374 0.000000e+00 839.0
27 TraesCS6D01G279400 chr6A 91.201 591 31 7 2020 2610 532658593 532659162 0.000000e+00 784.0
28 TraesCS6D01G279400 chr6A 92.398 342 24 2 1 342 532656092 532656431 1.920000e-133 486.0
29 TraesCS6D01G279400 chr6A 74.928 1041 145 74 1002 1971 532843566 532844561 2.020000e-98 370.0
30 TraesCS6D01G279400 chr6A 78.821 458 69 10 2653 3086 532873000 532873453 2.700000e-72 283.0
31 TraesCS6D01G279400 chr6A 76.330 376 63 17 2175 2549 532872728 532873078 1.310000e-40 178.0
32 TraesCS6D01G279400 chr6A 87.417 151 15 4 472 622 532656466 532656612 2.200000e-38 171.0
33 TraesCS6D01G279400 chr6A 80.000 170 13 11 2604 2773 532659054 532659202 6.280000e-19 106.0
34 TraesCS6D01G279400 chr6A 84.536 97 12 1 2456 2549 532659065 532659161 4.890000e-15 93.5
35 TraesCS6D01G279400 chr6A 89.062 64 7 0 2607 2670 532659099 532659162 3.810000e-11 80.5
36 TraesCS6D01G279400 chr6A 100.000 34 0 0 3776 3809 532660507 532660540 3.830000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G279400 chr6D 387647781 387652369 4588 False 1409.857143 8475 96.815714 1 4589 7 chr6D.!!$F2 4588
1 TraesCS6D01G279400 chr6B 578555138 578558427 3289 False 692.000000 1447 88.570800 679 3668 5 chr6B.!!$F4 2989
2 TraesCS6D01G279400 chr6B 578657712 578658430 718 True 595.000000 595 82.166000 3823 4587 1 chr6B.!!$R2 764
3 TraesCS6D01G279400 chr6A 532656092 532661374 5282 False 525.090000 1441 88.474600 1 4587 10 chr6A.!!$F2 4586
4 TraesCS6D01G279400 chr6A 532843566 532844561 995 False 370.000000 370 74.928000 1002 1971 1 chr6A.!!$F1 969
5 TraesCS6D01G279400 chr6A 532872728 532873453 725 False 230.500000 283 77.575500 2175 3086 2 chr6A.!!$F3 911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 556 0.030369 CGAGTCGTAGTACCCCATGC 59.970 60.000 3.82 0.00 0.00 4.06 F
940 985 0.032813 TATCCTCTTCCGGAACCCGT 60.033 55.000 14.35 1.18 46.80 5.28 F
1538 1693 0.321564 CCGTGGATTCTGCAGGACAA 60.322 55.000 15.13 0.57 0.00 3.18 F
1958 2153 1.402968 CGGTGGCTGATTTCTGGATTG 59.597 52.381 0.00 0.00 0.00 2.67 F
2565 3424 1.213537 GTAGCGTACAACGGGCAGA 59.786 57.895 1.25 0.00 42.82 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2117 0.107017 CCAGAAATCAGCCACCGGAT 60.107 55.0 9.46 0.00 0.00 4.18 R
1937 2119 0.107017 ATCCAGAAATCAGCCACCGG 60.107 55.0 0.00 0.00 0.00 5.28 R
2548 3407 0.179121 CATCTGCCCGTTGTACGCTA 60.179 55.0 0.00 0.00 40.91 4.26 R
3128 4083 0.394192 AGTACTGTTGCTGCTGCTGA 59.606 50.0 17.00 2.73 40.48 4.26 R
4269 5731 0.179092 GCCTCTAATGTAACGGCGGT 60.179 55.0 13.24 7.51 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.435566 GTCGACATAGATCTGCGTTTGA 58.564 45.455 11.55 2.37 0.00 2.69
65 66 1.855360 GATCTGCGTTTGATCGAGGTC 59.145 52.381 0.00 0.00 32.29 3.85
81 82 0.108945 GGTCGGTAGAAGTTGGGACG 60.109 60.000 0.00 0.00 0.00 4.79
85 86 1.402456 CGGTAGAAGTTGGGACGTCAG 60.402 57.143 18.91 0.00 36.83 3.51
96 97 3.093814 TGGGACGTCAGATTGCTTACTA 58.906 45.455 18.91 0.00 0.00 1.82
97 98 3.704566 TGGGACGTCAGATTGCTTACTAT 59.295 43.478 18.91 0.00 0.00 2.12
110 111 9.099071 AGATTGCTTACTATCCTATCATCTGTT 57.901 33.333 0.00 0.00 0.00 3.16
138 139 7.182761 CGTAATGCTCCTATTTTCTCTTGTTG 58.817 38.462 0.00 0.00 0.00 3.33
143 144 6.772716 TGCTCCTATTTTCTCTTGTTGAGTTT 59.227 34.615 0.00 0.00 43.13 2.66
147 148 7.936847 TCCTATTTTCTCTTGTTGAGTTTAGCA 59.063 33.333 0.00 0.00 43.13 3.49
173 174 2.250924 CATGGGAAAAGGCTGGAACTT 58.749 47.619 0.00 0.00 0.00 2.66
224 225 4.929808 CGTGTTTGTCCAGTTATCTAAGCT 59.070 41.667 0.00 0.00 0.00 3.74
259 260 8.522003 TGATAACACTTGATTTGTGTATTGCAT 58.478 29.630 0.00 0.00 46.46 3.96
272 273 5.691305 TGTGTATTGCATGAAGCTTTGTTTC 59.309 36.000 0.00 0.00 45.94 2.78
324 325 5.336150 TCAGCACCAAAATTTTCTTGTGA 57.664 34.783 20.64 14.01 0.00 3.58
325 326 5.350633 TCAGCACCAAAATTTTCTTGTGAG 58.649 37.500 20.64 14.53 0.00 3.51
342 343 5.921962 TGTGAGATGTTACAGCAGTAGAT 57.078 39.130 2.79 0.00 0.00 1.98
343 344 5.654497 TGTGAGATGTTACAGCAGTAGATG 58.346 41.667 2.79 0.00 37.14 2.90
344 345 5.046529 GTGAGATGTTACAGCAGTAGATGG 58.953 45.833 2.79 0.00 34.87 3.51
345 346 4.956075 TGAGATGTTACAGCAGTAGATGGA 59.044 41.667 2.79 0.00 34.87 3.41
346 347 5.600069 TGAGATGTTACAGCAGTAGATGGAT 59.400 40.000 2.79 0.00 34.87 3.41
348 349 7.040132 TGAGATGTTACAGCAGTAGATGGATAG 60.040 40.741 2.79 0.00 34.87 2.08
349 350 5.791336 TGTTACAGCAGTAGATGGATAGG 57.209 43.478 0.00 0.00 34.87 2.57
350 351 4.039245 TGTTACAGCAGTAGATGGATAGGC 59.961 45.833 0.00 0.00 34.87 3.93
351 352 1.974236 ACAGCAGTAGATGGATAGGCC 59.026 52.381 0.00 0.00 34.87 5.19
352 353 1.277557 CAGCAGTAGATGGATAGGCCC 59.722 57.143 0.00 0.00 34.97 5.80
353 354 1.150986 AGCAGTAGATGGATAGGCCCT 59.849 52.381 0.00 0.00 34.97 5.19
354 355 2.383683 AGCAGTAGATGGATAGGCCCTA 59.616 50.000 0.00 0.00 34.97 3.53
355 356 2.498078 GCAGTAGATGGATAGGCCCTAC 59.502 54.545 0.00 1.60 33.82 3.18
356 357 2.755655 CAGTAGATGGATAGGCCCTACG 59.244 54.545 0.00 0.00 36.85 3.51
357 358 1.477295 GTAGATGGATAGGCCCTACGC 59.523 57.143 0.00 0.00 34.97 4.42
366 367 2.987125 GCCCTACGCCTTTCCTCA 59.013 61.111 0.00 0.00 0.00 3.86
367 368 1.298667 GCCCTACGCCTTTCCTCAA 59.701 57.895 0.00 0.00 0.00 3.02
368 369 1.025113 GCCCTACGCCTTTCCTCAAC 61.025 60.000 0.00 0.00 0.00 3.18
369 370 0.323629 CCCTACGCCTTTCCTCAACA 59.676 55.000 0.00 0.00 0.00 3.33
370 371 1.065418 CCCTACGCCTTTCCTCAACAT 60.065 52.381 0.00 0.00 0.00 2.71
371 372 2.009774 CCTACGCCTTTCCTCAACATG 58.990 52.381 0.00 0.00 0.00 3.21
372 373 2.615493 CCTACGCCTTTCCTCAACATGT 60.615 50.000 0.00 0.00 0.00 3.21
373 374 1.238439 ACGCCTTTCCTCAACATGTG 58.762 50.000 0.00 0.00 0.00 3.21
374 375 1.238439 CGCCTTTCCTCAACATGTGT 58.762 50.000 0.00 0.00 0.00 3.72
375 376 1.069022 CGCCTTTCCTCAACATGTGTG 60.069 52.381 0.00 0.09 0.00 3.82
376 377 1.336240 GCCTTTCCTCAACATGTGTGC 60.336 52.381 0.00 0.00 0.00 4.57
377 378 1.270550 CCTTTCCTCAACATGTGTGCC 59.729 52.381 0.00 0.00 0.00 5.01
378 379 1.270550 CTTTCCTCAACATGTGTGCCC 59.729 52.381 0.00 0.00 0.00 5.36
379 380 0.184692 TTCCTCAACATGTGTGCCCA 59.815 50.000 0.00 0.00 0.00 5.36
380 381 0.405198 TCCTCAACATGTGTGCCCAT 59.595 50.000 0.00 0.00 0.00 4.00
381 382 1.203038 TCCTCAACATGTGTGCCCATT 60.203 47.619 0.00 0.00 0.00 3.16
382 383 1.619827 CCTCAACATGTGTGCCCATTT 59.380 47.619 0.00 0.00 0.00 2.32
383 384 2.037511 CCTCAACATGTGTGCCCATTTT 59.962 45.455 0.00 0.00 0.00 1.82
384 385 3.319755 CTCAACATGTGTGCCCATTTTC 58.680 45.455 0.00 0.00 0.00 2.29
385 386 2.060284 CAACATGTGTGCCCATTTTCG 58.940 47.619 0.00 0.00 0.00 3.46
386 387 0.038343 ACATGTGTGCCCATTTTCGC 60.038 50.000 0.00 0.00 0.00 4.70
387 388 0.244450 CATGTGTGCCCATTTTCGCT 59.756 50.000 0.00 0.00 0.00 4.93
388 389 0.968405 ATGTGTGCCCATTTTCGCTT 59.032 45.000 0.00 0.00 0.00 4.68
389 390 0.313672 TGTGTGCCCATTTTCGCTTC 59.686 50.000 0.00 0.00 0.00 3.86
390 391 0.313672 GTGTGCCCATTTTCGCTTCA 59.686 50.000 0.00 0.00 0.00 3.02
391 392 0.597568 TGTGCCCATTTTCGCTTCAG 59.402 50.000 0.00 0.00 0.00 3.02
392 393 0.598065 GTGCCCATTTTCGCTTCAGT 59.402 50.000 0.00 0.00 0.00 3.41
393 394 0.881118 TGCCCATTTTCGCTTCAGTC 59.119 50.000 0.00 0.00 0.00 3.51
394 395 0.881118 GCCCATTTTCGCTTCAGTCA 59.119 50.000 0.00 0.00 0.00 3.41
395 396 1.269448 GCCCATTTTCGCTTCAGTCAA 59.731 47.619 0.00 0.00 0.00 3.18
396 397 2.922335 GCCCATTTTCGCTTCAGTCAAC 60.922 50.000 0.00 0.00 0.00 3.18
397 398 2.554032 CCCATTTTCGCTTCAGTCAACT 59.446 45.455 0.00 0.00 0.00 3.16
398 399 3.558505 CCATTTTCGCTTCAGTCAACTG 58.441 45.455 3.69 3.69 45.08 3.16
399 400 3.558505 CATTTTCGCTTCAGTCAACTGG 58.441 45.455 10.13 0.00 43.91 4.00
400 401 0.944386 TTTCGCTTCAGTCAACTGGC 59.056 50.000 10.13 5.93 43.91 4.85
401 402 0.106708 TTCGCTTCAGTCAACTGGCT 59.893 50.000 10.13 0.00 43.91 4.75
435 436 4.041917 CATGCCGGCGTTGTTGCT 62.042 61.111 21.21 0.00 34.52 3.91
436 437 3.294493 ATGCCGGCGTTGTTGCTT 61.294 55.556 23.90 0.00 34.52 3.91
437 438 3.267597 ATGCCGGCGTTGTTGCTTC 62.268 57.895 23.90 0.00 34.52 3.86
438 439 3.660111 GCCGGCGTTGTTGCTTCT 61.660 61.111 12.58 0.00 34.52 2.85
439 440 2.252260 CCGGCGTTGTTGCTTCTG 59.748 61.111 6.01 0.00 34.52 3.02
440 441 2.427410 CGGCGTTGTTGCTTCTGC 60.427 61.111 0.00 0.00 40.20 4.26
441 442 2.427410 GGCGTTGTTGCTTCTGCG 60.427 61.111 0.00 0.00 43.34 5.18
442 443 3.093449 GCGTTGTTGCTTCTGCGC 61.093 61.111 0.00 0.00 43.34 6.09
443 444 2.633657 CGTTGTTGCTTCTGCGCT 59.366 55.556 9.73 0.00 43.34 5.92
444 445 1.723542 CGTTGTTGCTTCTGCGCTG 60.724 57.895 9.73 8.88 43.34 5.18
445 446 2.012948 GTTGTTGCTTCTGCGCTGC 61.013 57.895 9.73 8.62 43.34 5.25
446 447 3.525844 TTGTTGCTTCTGCGCTGCG 62.526 57.895 19.17 19.17 43.34 5.18
447 448 4.017877 GTTGCTTCTGCGCTGCGT 62.018 61.111 24.04 0.00 43.34 5.24
448 449 4.016629 TTGCTTCTGCGCTGCGTG 62.017 61.111 24.04 16.28 43.34 5.34
451 452 3.782244 CTTCTGCGCTGCGTGGAC 61.782 66.667 24.04 7.18 0.00 4.02
465 466 3.594453 TGGACCTCCATTTGCATCC 57.406 52.632 0.00 0.00 42.01 3.51
466 467 0.394216 TGGACCTCCATTTGCATCCG 60.394 55.000 0.00 0.00 42.01 4.18
467 468 1.103398 GGACCTCCATTTGCATCCGG 61.103 60.000 0.00 0.00 35.64 5.14
468 469 0.107214 GACCTCCATTTGCATCCGGA 60.107 55.000 6.61 6.61 0.00 5.14
469 470 0.107017 ACCTCCATTTGCATCCGGAG 60.107 55.000 11.34 15.53 43.95 4.63
504 505 5.688348 CTTCTGTTGAAGCATACTCGTAC 57.312 43.478 0.00 0.00 42.50 3.67
505 506 5.386958 TTCTGTTGAAGCATACTCGTACT 57.613 39.130 0.00 0.00 0.00 2.73
506 507 4.982999 TCTGTTGAAGCATACTCGTACTC 58.017 43.478 0.00 0.00 0.00 2.59
507 508 4.106029 TGTTGAAGCATACTCGTACTCC 57.894 45.455 0.00 0.00 0.00 3.85
522 523 0.687354 ACTCCTGGGTCATGACACAC 59.313 55.000 26.87 15.88 40.30 3.82
526 527 2.746277 GGGTCATGACACACCGGC 60.746 66.667 26.47 7.75 34.14 6.13
527 528 3.118454 GGTCATGACACACCGGCG 61.118 66.667 26.47 0.00 0.00 6.46
528 529 3.788766 GTCATGACACACCGGCGC 61.789 66.667 21.07 0.00 0.00 6.53
549 556 0.030369 CGAGTCGTAGTACCCCATGC 59.970 60.000 3.82 0.00 0.00 4.06
612 619 2.051345 GCGTTCCGTTGGCTTGTG 60.051 61.111 0.00 0.00 0.00 3.33
616 623 1.826054 TTCCGTTGGCTTGTGGTGG 60.826 57.895 0.00 0.00 0.00 4.61
622 629 2.912025 GGCTTGTGGTGGTGGTGG 60.912 66.667 0.00 0.00 0.00 4.61
625 632 2.441164 TTGTGGTGGTGGTGGTGC 60.441 61.111 0.00 0.00 0.00 5.01
626 633 4.866224 TGTGGTGGTGGTGGTGCG 62.866 66.667 0.00 0.00 0.00 5.34
639 646 4.337060 GTGCGCCGGTTTGGGTTC 62.337 66.667 4.18 0.00 38.63 3.62
665 672 4.821589 CGTCCCTTGGCCGCTCTC 62.822 72.222 0.00 0.00 0.00 3.20
666 673 3.394836 GTCCCTTGGCCGCTCTCT 61.395 66.667 0.00 0.00 0.00 3.10
667 674 2.058595 GTCCCTTGGCCGCTCTCTA 61.059 63.158 0.00 0.00 0.00 2.43
668 675 2.058595 TCCCTTGGCCGCTCTCTAC 61.059 63.158 0.00 0.00 0.00 2.59
670 677 2.105128 CTTGGCCGCTCTCTACCG 59.895 66.667 0.00 0.00 0.00 4.02
671 678 4.143333 TTGGCCGCTCTCTACCGC 62.143 66.667 0.00 0.00 0.00 5.68
675 682 3.905678 CCGCTCTCTACCGCCCTG 61.906 72.222 0.00 0.00 0.00 4.45
676 683 3.905678 CGCTCTCTACCGCCCTGG 61.906 72.222 0.00 0.00 46.41 4.45
739 746 1.467342 GGCACCGACTAAATGTTGACC 59.533 52.381 0.00 0.00 31.68 4.02
743 750 1.730064 CCGACTAAATGTTGACCGGTG 59.270 52.381 14.63 0.00 31.68 4.94
764 771 1.178276 ATCACCACAGTCGTCTCCTC 58.822 55.000 0.00 0.00 0.00 3.71
765 772 0.179001 TCACCACAGTCGTCTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
768 775 0.457851 CCACAGTCGTCTCCTCATCC 59.542 60.000 0.00 0.00 0.00 3.51
769 776 0.099613 CACAGTCGTCTCCTCATCCG 59.900 60.000 0.00 0.00 0.00 4.18
770 777 0.035343 ACAGTCGTCTCCTCATCCGA 60.035 55.000 0.00 0.00 0.00 4.55
772 779 1.728672 GTCGTCTCCTCATCCGACC 59.271 63.158 0.00 0.00 42.76 4.79
773 780 1.453379 TCGTCTCCTCATCCGACCC 60.453 63.158 0.00 0.00 0.00 4.46
868 908 3.077556 GGCGAGCCTGAGGGAGAA 61.078 66.667 6.90 0.00 33.58 2.87
896 940 1.746615 CCATGACTTGGTGCCGGAG 60.747 63.158 5.05 0.00 40.99 4.63
924 968 1.140407 GCATCGGCGCGTATCCTATC 61.140 60.000 8.43 0.00 0.00 2.08
938 983 1.049402 CCTATCCTCTTCCGGAACCC 58.951 60.000 14.35 0.00 36.49 4.11
940 985 0.032813 TATCCTCTTCCGGAACCCGT 60.033 55.000 14.35 1.18 46.80 5.28
961 1006 0.950836 TTCGTAACGAACCCGAGTCA 59.049 50.000 0.00 0.00 41.05 3.41
967 1012 3.672767 AACGAACCCGAGTCAGTATTT 57.327 42.857 0.00 0.00 39.50 1.40
976 1021 3.186909 CGAGTCAGTATTTGATGCGGAA 58.813 45.455 0.00 0.00 38.29 4.30
982 1027 3.016736 AGTATTTGATGCGGAAACAGGG 58.983 45.455 0.00 0.00 0.00 4.45
985 1030 1.243902 TTGATGCGGAAACAGGGTTC 58.756 50.000 0.00 0.00 0.00 3.62
1038 1090 1.448540 CCAAGAAGCGCGAGACCAT 60.449 57.895 12.10 0.00 0.00 3.55
1095 1147 2.100584 CCCAGAACGATCTCCTCTTCTG 59.899 54.545 0.00 0.00 38.05 3.02
1097 1149 3.194542 CCAGAACGATCTCCTCTTCTGTT 59.805 47.826 0.00 0.00 37.39 3.16
1102 1154 2.223688 CGATCTCCTCTTCTGTTGCGAT 60.224 50.000 0.00 0.00 0.00 4.58
1103 1155 2.949451 TCTCCTCTTCTGTTGCGATC 57.051 50.000 0.00 0.00 0.00 3.69
1104 1156 1.133216 TCTCCTCTTCTGTTGCGATCG 59.867 52.381 11.69 11.69 0.00 3.69
1106 1158 0.459237 CCTCTTCTGTTGCGATCGCT 60.459 55.000 37.01 0.00 42.51 4.93
1107 1159 1.202302 CCTCTTCTGTTGCGATCGCTA 60.202 52.381 37.01 29.14 42.51 4.26
1108 1160 2.115595 CTCTTCTGTTGCGATCGCTAG 58.884 52.381 37.01 29.54 42.51 3.42
1109 1161 0.574454 CTTCTGTTGCGATCGCTAGC 59.426 55.000 37.01 26.22 42.51 3.42
1141 1201 2.276309 GACATGGCAGAGGAAGGGGG 62.276 65.000 0.00 0.00 0.00 5.40
1491 1626 2.478370 CCGCCGATCGTCTTACTTACAA 60.478 50.000 15.09 0.00 36.19 2.41
1506 1641 5.505181 ACTTACAACCTCTGGTGATCAAT 57.495 39.130 0.00 0.00 35.34 2.57
1512 1647 4.162040 ACCTCTGGTGATCAATTCATCC 57.838 45.455 0.00 0.00 34.27 3.51
1535 1690 0.614697 TCTCCGTGGATTCTGCAGGA 60.615 55.000 15.13 5.14 0.00 3.86
1536 1691 0.460987 CTCCGTGGATTCTGCAGGAC 60.461 60.000 15.13 5.55 0.00 3.85
1538 1693 0.321564 CCGTGGATTCTGCAGGACAA 60.322 55.000 15.13 0.57 0.00 3.18
1553 1708 3.093835 CAATACAGGGGCCGGGGA 61.094 66.667 2.18 0.00 0.00 4.81
1862 2044 1.947456 GGCAAGACGGTCAGTTTTCTT 59.053 47.619 11.27 0.00 0.00 2.52
1866 2048 4.372656 CAAGACGGTCAGTTTTCTTCTCT 58.627 43.478 11.27 0.00 0.00 3.10
1940 2122 6.674066 TGTCTTTTTGCTAAAAGTAATCCGG 58.326 36.000 25.60 0.00 46.66 5.14
1945 2127 2.026636 TGCTAAAAGTAATCCGGTGGCT 60.027 45.455 0.00 0.00 0.00 4.75
1953 2148 1.755179 AATCCGGTGGCTGATTTCTG 58.245 50.000 0.00 0.00 0.00 3.02
1958 2153 1.402968 CGGTGGCTGATTTCTGGATTG 59.597 52.381 0.00 0.00 0.00 2.67
1966 2161 4.919754 GCTGATTTCTGGATTGTGAACAAC 59.080 41.667 0.00 0.00 38.86 3.32
1972 2167 6.869315 TTCTGGATTGTGAACAACGATTTA 57.131 33.333 0.00 0.00 38.86 1.40
1976 2171 5.151389 GGATTGTGAACAACGATTTACCAC 58.849 41.667 0.00 0.00 38.86 4.16
2047 2879 4.978083 ATCTGACTTTGATTGGATGCAC 57.022 40.909 0.00 0.00 0.00 4.57
2312 3144 1.996786 AATGCCTGCAAATCGAGCCG 61.997 55.000 0.00 0.00 0.00 5.52
2421 3253 3.460672 ATGGGGTATCACGCTGGCG 62.461 63.158 13.56 13.56 46.03 5.69
2505 3364 3.617735 TGGCGTACAACGGGCAGA 61.618 61.111 1.25 0.00 42.82 4.26
2548 3407 4.692475 GGCGTACAACGGGCAGGT 62.692 66.667 1.25 0.00 42.82 4.00
2549 3408 2.262292 GCGTACAACGGGCAGGTA 59.738 61.111 1.25 0.00 42.82 3.08
2550 3409 1.808390 GCGTACAACGGGCAGGTAG 60.808 63.158 1.25 0.00 42.82 3.18
2551 3410 1.808390 CGTACAACGGGCAGGTAGC 60.808 63.158 0.00 0.00 38.08 3.58
2560 3419 3.776656 GCAGGTAGCGTACAACGG 58.223 61.111 1.25 0.00 42.82 4.44
2561 3420 1.808390 GCAGGTAGCGTACAACGGG 60.808 63.158 1.25 0.00 42.82 5.28
2562 3421 1.808390 CAGGTAGCGTACAACGGGC 60.808 63.158 1.25 0.00 42.82 6.13
2563 3422 2.262292 GGTAGCGTACAACGGGCA 59.738 61.111 1.25 0.00 42.82 5.36
2564 3423 1.808390 GGTAGCGTACAACGGGCAG 60.808 63.158 1.25 0.00 42.82 4.85
2565 3424 1.213537 GTAGCGTACAACGGGCAGA 59.786 57.895 1.25 0.00 42.82 4.26
2608 3467 4.692475 GGCGTACAACGGGCAGGT 62.692 66.667 1.25 0.00 42.82 4.00
2609 3468 3.419759 GCGTACAACGGGCAGGTG 61.420 66.667 0.00 0.00 42.82 4.00
2610 3469 2.740826 CGTACAACGGGCAGGTGG 60.741 66.667 7.76 0.00 43.31 4.61
2611 3470 3.053896 GTACAACGGGCAGGTGGC 61.054 66.667 7.76 0.00 43.31 5.01
2612 3471 4.690719 TACAACGGGCAGGTGGCG 62.691 66.667 7.76 0.00 43.31 5.69
2614 3473 4.690719 CAACGGGCAGGTGGCGTA 62.691 66.667 0.00 0.00 46.16 4.42
2615 3474 4.692475 AACGGGCAGGTGGCGTAC 62.692 66.667 0.00 0.00 46.16 3.67
2617 3476 4.690719 CGGGCAGGTGGCGTACAA 62.691 66.667 0.00 0.00 46.16 2.41
2618 3477 3.053896 GGGCAGGTGGCGTACAAC 61.054 66.667 0.00 0.00 46.16 3.32
2619 3478 3.419759 GGCAGGTGGCGTACAACG 61.420 66.667 0.00 0.00 43.31 4.10
2620 3479 3.419759 GCAGGTGGCGTACAACGG 61.420 66.667 1.25 0.00 43.31 4.44
2621 3480 2.740826 CAGGTGGCGTACAACGGG 60.741 66.667 1.25 0.00 43.31 5.28
2622 3481 4.692475 AGGTGGCGTACAACGGGC 62.692 66.667 1.25 0.00 43.31 6.13
2623 3482 4.992511 GGTGGCGTACAACGGGCA 62.993 66.667 1.25 0.00 42.82 5.36
2624 3483 3.419759 GTGGCGTACAACGGGCAG 61.420 66.667 1.25 0.00 42.82 4.85
2625 3484 3.617735 TGGCGTACAACGGGCAGA 61.618 61.111 1.25 0.00 42.82 4.26
2626 3485 2.125269 GGCGTACAACGGGCAGAT 60.125 61.111 1.25 0.00 42.82 2.90
2627 3486 2.461110 GGCGTACAACGGGCAGATG 61.461 63.158 1.25 0.00 42.82 2.90
2628 3487 3.089784 CGTACAACGGGCAGATGC 58.910 61.111 0.00 0.00 38.08 3.91
2668 3527 4.692475 GGCGTACAACGGGCAGGT 62.692 66.667 1.25 0.00 42.82 4.00
2669 3528 3.419759 GCGTACAACGGGCAGGTG 61.420 66.667 0.00 0.00 42.82 4.00
2670 3529 2.740826 CGTACAACGGGCAGGTGG 60.741 66.667 7.76 0.00 43.31 4.61
2671 3530 3.053896 GTACAACGGGCAGGTGGC 61.054 66.667 7.76 0.00 43.31 5.01
2672 3531 4.690719 TACAACGGGCAGGTGGCG 62.691 66.667 7.76 0.00 43.31 5.69
2674 3533 4.690719 CAACGGGCAGGTGGCGTA 62.691 66.667 0.00 0.00 46.16 4.42
2675 3534 4.692475 AACGGGCAGGTGGCGTAC 62.692 66.667 0.00 0.00 46.16 3.67
2677 3536 4.690719 CGGGCAGGTGGCGTACAA 62.691 66.667 0.00 0.00 46.16 2.41
2678 3537 3.053896 GGGCAGGTGGCGTACAAC 61.054 66.667 0.00 0.00 46.16 3.32
2679 3538 3.419759 GGCAGGTGGCGTACAACG 61.420 66.667 0.00 0.00 43.31 4.10
2680 3539 3.419759 GCAGGTGGCGTACAACGG 61.420 66.667 1.25 0.00 43.31 4.44
2681 3540 2.740826 CAGGTGGCGTACAACGGG 60.741 66.667 1.25 0.00 43.31 5.28
2682 3541 4.692475 AGGTGGCGTACAACGGGC 62.692 66.667 1.25 0.00 43.31 6.13
2683 3542 4.992511 GGTGGCGTACAACGGGCA 62.993 66.667 1.25 0.00 42.82 5.36
2684 3543 3.419759 GTGGCGTACAACGGGCAG 61.420 66.667 1.25 0.00 42.82 4.85
2685 3544 3.617735 TGGCGTACAACGGGCAGA 61.618 61.111 1.25 0.00 42.82 4.26
2686 3545 2.125269 GGCGTACAACGGGCAGAT 60.125 61.111 1.25 0.00 42.82 2.90
2687 3546 2.461110 GGCGTACAACGGGCAGATG 61.461 63.158 1.25 0.00 42.82 2.90
2688 3547 3.089784 CGTACAACGGGCAGATGC 58.910 61.111 0.00 0.00 38.08 3.91
2804 3663 3.353836 CAGGTGGCGTTCAACGGG 61.354 66.667 12.81 0.00 42.82 5.28
3005 3921 1.811266 CCTCCGGATGCAGTCGTTG 60.811 63.158 3.57 0.00 0.00 4.10
3091 4046 2.882876 CCAGCAGCAGCAATGGAC 59.117 61.111 3.17 0.00 45.49 4.02
3125 4080 4.039357 CACCAGCAGCAGCAGCAC 62.039 66.667 12.92 0.00 45.49 4.40
3128 4083 3.062466 CAGCAGCAGCAGCACCAT 61.062 61.111 12.92 0.00 45.49 3.55
3194 4161 2.751436 CACGAAGGGGCCATGGTG 60.751 66.667 14.67 7.09 0.00 4.17
3292 4259 0.903454 GTGGAGGGAAACGAGGAGGA 60.903 60.000 0.00 0.00 0.00 3.71
3295 4262 0.533032 GAGGGAAACGAGGAGGACTG 59.467 60.000 0.00 0.00 0.00 3.51
3429 4396 0.740868 ATTCGGCACAGTGATGGACG 60.741 55.000 4.15 0.00 0.00 4.79
3430 4397 3.490759 CGGCACAGTGATGGACGC 61.491 66.667 4.15 0.00 0.00 5.19
3541 4545 6.739843 GCAGCAGATAGACCTTCTATGCTTTA 60.740 42.308 8.09 0.00 40.47 1.85
3542 4546 6.867816 CAGCAGATAGACCTTCTATGCTTTAG 59.132 42.308 8.09 0.00 40.47 1.85
3543 4547 6.553100 AGCAGATAGACCTTCTATGCTTTAGT 59.447 38.462 0.32 0.00 40.47 2.24
3544 4548 6.866248 GCAGATAGACCTTCTATGCTTTAGTC 59.134 42.308 0.32 0.00 39.63 2.59
3545 4549 7.470702 GCAGATAGACCTTCTATGCTTTAGTCA 60.471 40.741 0.32 0.00 39.63 3.41
3547 4551 8.417884 AGATAGACCTTCTATGCTTTAGTCAAC 58.582 37.037 0.32 0.00 39.63 3.18
3548 4552 6.613153 AGACCTTCTATGCTTTAGTCAACT 57.387 37.500 0.00 0.00 0.00 3.16
3549 4553 6.402222 AGACCTTCTATGCTTTAGTCAACTG 58.598 40.000 0.00 0.00 0.00 3.16
3550 4554 6.014156 AGACCTTCTATGCTTTAGTCAACTGT 60.014 38.462 0.00 0.00 0.00 3.55
3551 4555 7.178628 AGACCTTCTATGCTTTAGTCAACTGTA 59.821 37.037 0.00 0.00 0.00 2.74
3558 4562 9.750125 CTATGCTTTAGTCAACTGTATGTATGA 57.250 33.333 0.00 0.00 0.00 2.15
3709 5115 2.744202 AGTTTTGTTATGAGGCGAGCAG 59.256 45.455 0.00 0.00 0.00 4.24
3767 5192 3.006110 CAGGAACAGCAAAACATGGATGT 59.994 43.478 0.00 0.00 44.20 3.06
3768 5193 3.006110 AGGAACAGCAAAACATGGATGTG 59.994 43.478 0.00 0.00 41.61 3.21
3769 5194 3.319755 GAACAGCAAAACATGGATGTGG 58.680 45.455 0.00 0.00 41.61 4.17
3770 5195 1.001181 ACAGCAAAACATGGATGTGGC 59.999 47.619 0.00 0.00 41.61 5.01
3771 5196 0.244450 AGCAAAACATGGATGTGGCG 59.756 50.000 0.00 0.00 41.61 5.69
3772 5197 0.243365 GCAAAACATGGATGTGGCGA 59.757 50.000 0.00 0.00 41.61 5.54
3773 5198 1.981254 CAAAACATGGATGTGGCGAC 58.019 50.000 0.00 0.00 41.61 5.19
3818 5243 4.800355 GCCAGCAGCATTACAAGC 57.200 55.556 0.00 0.00 42.97 4.01
3819 5244 1.140375 GCCAGCAGCATTACAAGCC 59.860 57.895 0.00 0.00 42.97 4.35
3820 5245 1.318158 GCCAGCAGCATTACAAGCCT 61.318 55.000 0.00 0.00 42.97 4.58
3832 5257 2.319136 ACAAGCCTACAACACGAACA 57.681 45.000 0.00 0.00 0.00 3.18
3855 5280 4.800355 GTAGCTAACGGACACGGG 57.200 61.111 0.00 0.00 46.48 5.28
3901 5344 2.639883 CTAAACCCGCCCGCCTACTC 62.640 65.000 0.00 0.00 0.00 2.59
4064 5507 3.329889 TTGGGGATGCAGCGAGGT 61.330 61.111 0.00 0.00 0.00 3.85
4065 5508 2.826777 CTTGGGGATGCAGCGAGGTT 62.827 60.000 0.00 0.00 0.00 3.50
4066 5509 2.825836 GGGGATGCAGCGAGGTTG 60.826 66.667 0.00 0.00 0.00 3.77
4067 5510 2.045926 GGGATGCAGCGAGGTTGT 60.046 61.111 0.00 0.00 0.00 3.32
4068 5511 2.401766 GGGATGCAGCGAGGTTGTG 61.402 63.158 0.00 0.00 0.00 3.33
4069 5512 2.482374 GATGCAGCGAGGTTGTGC 59.518 61.111 0.00 0.00 37.73 4.57
4141 5590 3.134127 GCTCATCCCGGTTGCCAC 61.134 66.667 0.00 0.00 0.00 5.01
4159 5608 2.492090 CGTGAGGAGAGGCGAAGG 59.508 66.667 0.00 0.00 0.00 3.46
4183 5632 1.152118 TAGCAGTGGGTGGTCAGGT 60.152 57.895 0.00 0.00 38.14 4.00
4184 5633 0.766674 TAGCAGTGGGTGGTCAGGTT 60.767 55.000 0.00 0.00 38.14 3.50
4187 5636 0.762418 CAGTGGGTGGTCAGGTTGTA 59.238 55.000 0.00 0.00 0.00 2.41
4188 5637 1.056660 AGTGGGTGGTCAGGTTGTAG 58.943 55.000 0.00 0.00 0.00 2.74
4189 5638 0.605589 GTGGGTGGTCAGGTTGTAGC 60.606 60.000 0.00 0.00 0.00 3.58
4204 5653 1.294068 TGTAGCCTTGTAGGGAGGGAT 59.706 52.381 0.00 0.00 35.37 3.85
4255 5717 3.071206 GAGCCAGCGGACCTCTGA 61.071 66.667 13.25 0.00 33.54 3.27
4256 5718 2.364842 AGCCAGCGGACCTCTGAT 60.365 61.111 13.25 0.00 33.54 2.90
4257 5719 2.202987 GCCAGCGGACCTCTGATG 60.203 66.667 13.25 0.00 38.30 3.07
4258 5720 3.023949 GCCAGCGGACCTCTGATGT 62.024 63.158 13.25 0.00 36.95 3.06
4259 5721 1.153489 CCAGCGGACCTCTGATGTG 60.153 63.158 13.25 0.00 36.95 3.21
4260 5722 1.607801 CCAGCGGACCTCTGATGTGA 61.608 60.000 13.25 0.00 36.95 3.58
4261 5723 0.463204 CAGCGGACCTCTGATGTGAT 59.537 55.000 5.48 0.00 34.19 3.06
4262 5724 1.134580 CAGCGGACCTCTGATGTGATT 60.135 52.381 5.48 0.00 34.19 2.57
4263 5725 1.556911 AGCGGACCTCTGATGTGATTT 59.443 47.619 0.00 0.00 0.00 2.17
4264 5726 2.766263 AGCGGACCTCTGATGTGATTTA 59.234 45.455 0.00 0.00 0.00 1.40
4265 5727 3.389329 AGCGGACCTCTGATGTGATTTAT 59.611 43.478 0.00 0.00 0.00 1.40
4266 5728 4.588951 AGCGGACCTCTGATGTGATTTATA 59.411 41.667 0.00 0.00 0.00 0.98
4267 5729 4.686554 GCGGACCTCTGATGTGATTTATAC 59.313 45.833 0.00 0.00 0.00 1.47
4268 5730 5.230942 CGGACCTCTGATGTGATTTATACC 58.769 45.833 0.00 0.00 0.00 2.73
4269 5731 5.221441 CGGACCTCTGATGTGATTTATACCA 60.221 44.000 0.00 0.00 0.00 3.25
4270 5732 5.992217 GGACCTCTGATGTGATTTATACCAC 59.008 44.000 0.00 0.00 0.00 4.16
4271 5733 5.930135 ACCTCTGATGTGATTTATACCACC 58.070 41.667 0.00 0.00 32.61 4.61
4272 5734 4.991056 CCTCTGATGTGATTTATACCACCG 59.009 45.833 0.00 0.00 32.61 4.94
4273 5735 4.377021 TCTGATGTGATTTATACCACCGC 58.623 43.478 0.00 0.00 32.61 5.68
4274 5736 3.472652 TGATGTGATTTATACCACCGCC 58.527 45.455 0.00 0.00 32.61 6.13
4275 5737 1.942677 TGTGATTTATACCACCGCCG 58.057 50.000 0.00 0.00 32.61 6.46
4276 5738 1.207570 TGTGATTTATACCACCGCCGT 59.792 47.619 0.00 0.00 32.61 5.68
4277 5739 2.282407 GTGATTTATACCACCGCCGTT 58.718 47.619 0.00 0.00 0.00 4.44
4278 5740 3.118847 TGTGATTTATACCACCGCCGTTA 60.119 43.478 0.00 0.00 32.61 3.18
4324 5788 2.549282 CGCGGTTACAGTGCACAC 59.451 61.111 21.04 8.13 0.00 3.82
4327 5791 0.878523 GCGGTTACAGTGCACACAGA 60.879 55.000 21.04 0.00 0.00 3.41
4329 5793 0.868406 GGTTACAGTGCACACAGAGC 59.132 55.000 21.04 8.10 0.00 4.09
4330 5794 1.581934 GTTACAGTGCACACAGAGCA 58.418 50.000 21.04 0.00 40.19 4.26
4332 5796 0.601046 TACAGTGCACACAGAGCAGC 60.601 55.000 21.04 0.00 43.63 5.25
4333 5797 1.597302 CAGTGCACACAGAGCAGCT 60.597 57.895 21.04 0.00 43.63 4.24
4334 5798 1.301558 AGTGCACACAGAGCAGCTC 60.302 57.895 21.04 15.25 43.63 4.09
4361 5825 2.045926 CGGGAAGCAGGGGTGAAG 60.046 66.667 0.00 0.00 0.00 3.02
4377 5841 0.037232 GAAGTGGACCGGAAGAGGTG 60.037 60.000 9.46 0.00 46.09 4.00
4378 5842 1.481056 AAGTGGACCGGAAGAGGTGG 61.481 60.000 9.46 0.00 46.09 4.61
4379 5843 2.606519 TGGACCGGAAGAGGTGGG 60.607 66.667 9.46 0.00 46.09 4.61
4380 5844 3.400054 GGACCGGAAGAGGTGGGG 61.400 72.222 9.46 0.00 46.09 4.96
4381 5845 3.400054 GACCGGAAGAGGTGGGGG 61.400 72.222 9.46 0.00 46.09 5.40
4382 5846 3.918328 GACCGGAAGAGGTGGGGGA 62.918 68.421 9.46 0.00 46.09 4.81
4383 5847 3.400054 CCGGAAGAGGTGGGGGAC 61.400 72.222 0.00 0.00 0.00 4.46
4444 5911 2.038952 TGAGATGGGGTGAAGTGAACTG 59.961 50.000 0.00 0.00 0.00 3.16
4449 5916 1.133915 GGGGTGAAGTGAACTGGTGAA 60.134 52.381 0.00 0.00 0.00 3.18
4562 6032 2.815211 CGGACATGTGGTGCCTCG 60.815 66.667 1.15 0.00 33.68 4.63
4587 6059 4.137872 TCGATCCGCCGTGGGAAC 62.138 66.667 0.00 0.00 40.09 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.167635 CGCAGTAGATAACGTGATAAGAAACAT 59.832 37.037 0.00 0.00 0.00 2.71
6 7 6.471198 CGCAGTAGATAACGTGATAAGAAACA 59.529 38.462 0.00 0.00 0.00 2.83
21 22 1.091197 TCGACCGCACGCAGTAGATA 61.091 55.000 0.00 0.00 41.61 1.98
34 35 0.308068 ACGCAGATCTATGTCGACCG 59.692 55.000 14.12 8.27 0.00 4.79
57 58 1.749634 CCAACTTCTACCGACCTCGAT 59.250 52.381 0.00 0.00 43.02 3.59
65 66 0.599558 TGACGTCCCAACTTCTACCG 59.400 55.000 14.12 0.00 0.00 4.02
81 82 8.748412 AGATGATAGGATAGTAAGCAATCTGAC 58.252 37.037 0.00 0.00 0.00 3.51
85 86 9.149225 CAACAGATGATAGGATAGTAAGCAATC 57.851 37.037 0.00 0.00 0.00 2.67
96 97 4.955811 TTACGGCAACAGATGATAGGAT 57.044 40.909 0.00 0.00 0.00 3.24
97 98 4.631131 CATTACGGCAACAGATGATAGGA 58.369 43.478 0.00 0.00 0.00 2.94
110 111 4.127171 GAGAAAATAGGAGCATTACGGCA 58.873 43.478 0.00 0.00 35.83 5.69
138 139 2.170607 TCCCATGCCTAGTGCTAAACTC 59.829 50.000 5.06 0.00 40.56 3.01
143 144 2.092429 CCTTTTCCCATGCCTAGTGCTA 60.092 50.000 5.06 0.00 42.00 3.49
147 148 1.002857 AGCCTTTTCCCATGCCTAGT 58.997 50.000 0.00 0.00 0.00 2.57
157 158 1.270305 GGCAAAGTTCCAGCCTTTTCC 60.270 52.381 6.68 0.00 44.92 3.13
173 174 4.730966 TGGTAAGGTAGTTGAATTGGCAA 58.269 39.130 0.68 0.68 0.00 4.52
243 244 5.648178 AGCTTCATGCAATACACAAATCA 57.352 34.783 0.00 0.00 45.94 2.57
259 260 7.169645 GCATAAATCAACAGAAACAAAGCTTCA 59.830 33.333 0.00 0.00 0.00 3.02
272 273 8.180267 CAGTCTAAAAGGAGCATAAATCAACAG 58.820 37.037 0.00 0.00 0.00 3.16
302 303 5.126869 TCTCACAAGAAAATTTTGGTGCTGA 59.873 36.000 8.47 11.38 0.00 4.26
303 304 5.350633 TCTCACAAGAAAATTTTGGTGCTG 58.649 37.500 8.47 9.66 0.00 4.41
313 314 6.488006 ACTGCTGTAACATCTCACAAGAAAAT 59.512 34.615 0.00 0.00 34.49 1.82
324 325 6.210385 CCTATCCATCTACTGCTGTAACATCT 59.790 42.308 4.91 0.00 0.00 2.90
325 326 6.393990 CCTATCCATCTACTGCTGTAACATC 58.606 44.000 4.91 0.00 0.00 3.06
349 350 1.025113 GTTGAGGAAAGGCGTAGGGC 61.025 60.000 0.00 0.00 42.51 5.19
350 351 0.323629 TGTTGAGGAAAGGCGTAGGG 59.676 55.000 0.00 0.00 0.00 3.53
351 352 2.009774 CATGTTGAGGAAAGGCGTAGG 58.990 52.381 0.00 0.00 0.00 3.18
352 353 2.416547 CACATGTTGAGGAAAGGCGTAG 59.583 50.000 0.00 0.00 0.00 3.51
353 354 2.224426 ACACATGTTGAGGAAAGGCGTA 60.224 45.455 0.00 0.00 0.00 4.42
354 355 1.238439 CACATGTTGAGGAAAGGCGT 58.762 50.000 0.00 0.00 0.00 5.68
355 356 1.069022 CACACATGTTGAGGAAAGGCG 60.069 52.381 0.00 0.00 0.00 5.52
356 357 1.336240 GCACACATGTTGAGGAAAGGC 60.336 52.381 0.00 0.00 0.00 4.35
357 358 1.270550 GGCACACATGTTGAGGAAAGG 59.729 52.381 0.00 0.00 0.00 3.11
358 359 1.270550 GGGCACACATGTTGAGGAAAG 59.729 52.381 0.00 0.00 0.00 2.62
359 360 1.327303 GGGCACACATGTTGAGGAAA 58.673 50.000 0.00 0.00 0.00 3.13
360 361 0.184692 TGGGCACACATGTTGAGGAA 59.815 50.000 0.00 0.00 0.00 3.36
361 362 0.405198 ATGGGCACACATGTTGAGGA 59.595 50.000 0.00 0.00 0.00 3.71
362 363 1.259609 AATGGGCACACATGTTGAGG 58.740 50.000 0.00 0.00 0.00 3.86
363 364 3.319755 GAAAATGGGCACACATGTTGAG 58.680 45.455 0.00 0.00 28.61 3.02
364 365 2.288091 CGAAAATGGGCACACATGTTGA 60.288 45.455 0.00 0.00 28.61 3.18
365 366 2.060284 CGAAAATGGGCACACATGTTG 58.940 47.619 0.00 0.00 28.61 3.33
366 367 1.605202 GCGAAAATGGGCACACATGTT 60.605 47.619 0.00 0.00 31.09 2.71
367 368 0.038343 GCGAAAATGGGCACACATGT 60.038 50.000 0.00 0.00 0.00 3.21
368 369 0.244450 AGCGAAAATGGGCACACATG 59.756 50.000 0.00 0.00 0.00 3.21
369 370 0.968405 AAGCGAAAATGGGCACACAT 59.032 45.000 0.00 0.00 0.00 3.21
370 371 0.313672 GAAGCGAAAATGGGCACACA 59.686 50.000 0.00 0.00 0.00 3.72
371 372 0.313672 TGAAGCGAAAATGGGCACAC 59.686 50.000 0.00 0.00 0.00 3.82
372 373 0.597568 CTGAAGCGAAAATGGGCACA 59.402 50.000 0.00 0.00 0.00 4.57
373 374 0.598065 ACTGAAGCGAAAATGGGCAC 59.402 50.000 0.00 0.00 0.00 5.01
374 375 0.881118 GACTGAAGCGAAAATGGGCA 59.119 50.000 0.00 0.00 0.00 5.36
375 376 0.881118 TGACTGAAGCGAAAATGGGC 59.119 50.000 0.00 0.00 0.00 5.36
376 377 2.554032 AGTTGACTGAAGCGAAAATGGG 59.446 45.455 0.00 0.00 0.00 4.00
377 378 3.558505 CAGTTGACTGAAGCGAAAATGG 58.441 45.455 5.19 0.00 46.59 3.16
378 379 3.558505 CCAGTTGACTGAAGCGAAAATG 58.441 45.455 12.54 0.00 46.59 2.32
379 380 2.030805 GCCAGTTGACTGAAGCGAAAAT 60.031 45.455 12.54 0.00 46.59 1.82
380 381 1.333619 GCCAGTTGACTGAAGCGAAAA 59.666 47.619 12.54 0.00 46.59 2.29
381 382 0.944386 GCCAGTTGACTGAAGCGAAA 59.056 50.000 12.54 0.00 46.59 3.46
382 383 0.106708 AGCCAGTTGACTGAAGCGAA 59.893 50.000 12.54 0.00 46.59 4.70
383 384 0.601046 CAGCCAGTTGACTGAAGCGA 60.601 55.000 12.54 0.00 46.59 4.93
384 385 1.864862 CAGCCAGTTGACTGAAGCG 59.135 57.895 12.54 0.00 46.59 4.68
385 386 0.888285 AGCAGCCAGTTGACTGAAGC 60.888 55.000 12.54 12.03 46.59 3.86
386 387 0.873054 CAGCAGCCAGTTGACTGAAG 59.127 55.000 12.54 3.47 46.59 3.02
387 388 1.168407 GCAGCAGCCAGTTGACTGAA 61.168 55.000 12.54 0.00 46.59 3.02
388 389 1.598962 GCAGCAGCCAGTTGACTGA 60.599 57.895 12.54 0.00 46.59 3.41
389 390 1.600076 AGCAGCAGCCAGTTGACTG 60.600 57.895 4.15 4.15 43.56 3.51
390 391 1.600076 CAGCAGCAGCCAGTTGACT 60.600 57.895 0.00 0.00 43.56 3.41
391 392 2.952245 CAGCAGCAGCCAGTTGAC 59.048 61.111 0.00 0.00 43.56 3.18
392 393 2.981909 GCAGCAGCAGCCAGTTGA 60.982 61.111 0.00 0.00 43.56 3.18
393 394 4.400109 CGCAGCAGCAGCCAGTTG 62.400 66.667 3.88 0.00 43.56 3.16
394 395 4.943252 ACGCAGCAGCAGCCAGTT 62.943 61.111 3.88 0.00 43.56 3.16
397 398 4.933563 TTCACGCAGCAGCAGCCA 62.934 61.111 3.88 0.00 43.56 4.75
398 399 4.395583 GTTCACGCAGCAGCAGCC 62.396 66.667 3.88 0.00 43.56 4.85
399 400 4.731503 CGTTCACGCAGCAGCAGC 62.732 66.667 0.82 0.00 42.27 5.25
423 424 2.427410 GCAGAAGCAACAACGCCG 60.427 61.111 0.00 0.00 41.58 6.46
425 426 3.093449 GCGCAGAAGCAACAACGC 61.093 61.111 0.30 0.00 42.27 4.84
429 430 4.016629 CGCAGCGCAGAAGCAACA 62.017 61.111 11.47 0.00 42.27 3.33
430 431 4.017877 ACGCAGCGCAGAAGCAAC 62.018 61.111 16.61 0.00 42.27 4.17
431 432 4.016629 CACGCAGCGCAGAAGCAA 62.017 61.111 16.61 0.00 42.27 3.91
434 435 3.782244 GTCCACGCAGCGCAGAAG 61.782 66.667 16.61 1.64 0.00 2.85
448 449 1.103398 CCGGATGCAAATGGAGGTCC 61.103 60.000 0.00 0.00 0.00 4.46
449 450 0.107214 TCCGGATGCAAATGGAGGTC 60.107 55.000 0.00 0.00 0.00 3.85
450 451 0.107017 CTCCGGATGCAAATGGAGGT 60.107 55.000 18.77 0.00 43.45 3.85
451 452 2.711711 CTCCGGATGCAAATGGAGG 58.288 57.895 18.77 5.83 43.45 4.30
452 453 0.107017 ACCTCCGGATGCAAATGGAG 60.107 55.000 19.32 19.32 46.10 3.86
453 454 0.394216 CACCTCCGGATGCAAATGGA 60.394 55.000 3.57 0.00 0.00 3.41
454 455 0.680921 ACACCTCCGGATGCAAATGG 60.681 55.000 3.57 2.76 0.00 3.16
455 456 1.133025 GAACACCTCCGGATGCAAATG 59.867 52.381 3.57 0.00 0.00 2.32
456 457 1.463674 GAACACCTCCGGATGCAAAT 58.536 50.000 3.57 0.00 0.00 2.32
457 458 0.608035 GGAACACCTCCGGATGCAAA 60.608 55.000 3.57 0.00 33.37 3.68
458 459 1.002624 GGAACACCTCCGGATGCAA 60.003 57.895 3.57 0.00 33.37 4.08
459 460 2.668632 GGAACACCTCCGGATGCA 59.331 61.111 3.57 0.00 33.37 3.96
467 468 0.980423 AGAAGCTGGAGGAACACCTC 59.020 55.000 7.64 7.64 46.71 3.85
468 469 0.689623 CAGAAGCTGGAGGAACACCT 59.310 55.000 0.00 0.00 40.67 4.00
469 470 0.398318 ACAGAAGCTGGAGGAACACC 59.602 55.000 0.00 0.00 40.37 4.16
470 471 1.876156 CAACAGAAGCTGGAGGAACAC 59.124 52.381 0.00 0.00 35.51 3.32
498 499 1.405821 GTCATGACCCAGGAGTACGAG 59.594 57.143 15.31 0.00 0.00 4.18
499 500 1.272258 TGTCATGACCCAGGAGTACGA 60.272 52.381 22.85 0.00 0.00 3.43
500 501 1.135083 GTGTCATGACCCAGGAGTACG 60.135 57.143 22.85 0.00 0.00 3.67
501 502 1.899814 TGTGTCATGACCCAGGAGTAC 59.100 52.381 22.85 11.89 0.00 2.73
502 503 1.899814 GTGTGTCATGACCCAGGAGTA 59.100 52.381 22.85 0.00 0.00 2.59
503 504 0.687354 GTGTGTCATGACCCAGGAGT 59.313 55.000 22.85 0.00 0.00 3.85
504 505 0.036010 GGTGTGTCATGACCCAGGAG 60.036 60.000 22.85 0.00 0.00 3.69
505 506 1.826340 CGGTGTGTCATGACCCAGGA 61.826 60.000 22.85 0.66 0.00 3.86
506 507 1.375908 CGGTGTGTCATGACCCAGG 60.376 63.158 22.85 8.91 0.00 4.45
507 508 1.375908 CCGGTGTGTCATGACCCAG 60.376 63.158 22.85 11.05 0.00 4.45
526 527 2.350537 GGTACTACGACTCGCGCG 60.351 66.667 26.76 26.76 46.04 6.86
527 528 2.023882 GGGTACTACGACTCGCGC 59.976 66.667 0.00 0.00 46.04 6.86
529 530 0.030369 CATGGGGTACTACGACTCGC 59.970 60.000 0.00 0.00 0.00 5.03
532 533 2.012902 GCGCATGGGGTACTACGACT 62.013 60.000 12.19 0.00 0.00 4.18
533 534 1.590792 GCGCATGGGGTACTACGAC 60.591 63.158 12.19 0.00 0.00 4.34
534 535 2.011741 CTGCGCATGGGGTACTACGA 62.012 60.000 12.24 0.00 0.00 3.43
549 556 3.274586 CGGTGGATCATGGCTGCG 61.275 66.667 0.00 0.00 0.00 5.18
581 588 1.961277 AACGCAAGCTCCGTTCAGG 60.961 57.895 16.49 0.00 44.70 3.86
599 606 2.203280 CCACCACAAGCCAACGGA 60.203 61.111 0.00 0.00 0.00 4.69
622 629 4.337060 GAACCCAAACCGGCGCAC 62.337 66.667 10.83 0.00 0.00 5.34
650 657 2.058595 GTAGAGAGCGGCCAAGGGA 61.059 63.158 2.24 0.00 0.00 4.20
651 658 2.501610 GTAGAGAGCGGCCAAGGG 59.498 66.667 2.24 0.00 0.00 3.95
652 659 2.501610 GGTAGAGAGCGGCCAAGG 59.498 66.667 2.24 0.00 0.00 3.61
653 660 2.105128 CGGTAGAGAGCGGCCAAG 59.895 66.667 2.24 0.00 42.86 3.61
654 661 4.143333 GCGGTAGAGAGCGGCCAA 62.143 66.667 2.24 0.00 46.62 4.52
658 665 3.905678 CAGGGCGGTAGAGAGCGG 61.906 72.222 0.00 0.00 46.62 5.52
660 667 4.228567 GCCAGGGCGGTAGAGAGC 62.229 72.222 0.00 0.00 36.97 4.09
710 717 1.754380 TAGTCGGTGCCTGCAGTTGT 61.754 55.000 13.81 0.00 0.00 3.32
743 750 1.546476 AGGAGACGACTGTGGTGATTC 59.454 52.381 0.00 0.00 0.00 2.52
755 762 1.453379 GGGTCGGATGAGGAGACGA 60.453 63.158 0.00 0.00 35.87 4.20
818 846 2.674380 GCCCTGGTGGTGCTCAAG 60.674 66.667 0.00 0.00 36.04 3.02
859 899 0.687354 GAGCCTGTTGTTCTCCCTCA 59.313 55.000 0.00 0.00 0.00 3.86
868 908 1.901591 CAAGTCATGGAGCCTGTTGT 58.098 50.000 0.00 0.00 0.00 3.32
919 963 1.049402 GGGTTCCGGAAGAGGATAGG 58.951 60.000 19.50 0.00 40.48 2.57
961 1006 3.016736 CCCTGTTTCCGCATCAAATACT 58.983 45.455 0.00 0.00 0.00 2.12
967 1012 0.953471 CGAACCCTGTTTCCGCATCA 60.953 55.000 0.00 0.00 0.00 3.07
976 1021 0.889186 GATGTGGTGCGAACCCTGTT 60.889 55.000 11.01 0.00 0.00 3.16
982 1027 0.889186 AACCTGGATGTGGTGCGAAC 60.889 55.000 0.00 0.00 37.93 3.95
985 1030 2.613026 TATAACCTGGATGTGGTGCG 57.387 50.000 0.00 0.00 37.93 5.34
1027 1072 0.710567 CAATCGATATGGTCTCGCGC 59.289 55.000 0.00 0.00 36.11 6.86
1028 1073 2.051879 ACAATCGATATGGTCTCGCG 57.948 50.000 0.00 0.00 36.11 5.87
1031 1077 3.914966 CGTGCTACAATCGATATGGTCTC 59.085 47.826 0.00 0.00 0.00 3.36
1038 1090 1.847818 GTGGCGTGCTACAATCGATA 58.152 50.000 0.00 0.00 0.00 2.92
1109 1161 2.507102 ATGTCGGCGAGTTGAGCG 60.507 61.111 11.20 0.00 35.00 5.03
1169 1232 3.478274 CCCTCCTGCTCTCCTGCC 61.478 72.222 0.00 0.00 0.00 4.85
1172 1235 3.999705 CTGCCCCTCCTGCTCTCCT 63.000 68.421 0.00 0.00 0.00 3.69
1208 1271 2.124403 TCCTCCTCCTCGTACGCC 60.124 66.667 11.24 0.00 0.00 5.68
1389 1464 2.969238 GTGCTCGATGATGGCCCG 60.969 66.667 0.00 0.00 0.00 6.13
1451 1526 0.995234 GCGAAAAACCGGCGAGAAAC 60.995 55.000 9.30 0.00 0.00 2.78
1491 1626 3.784763 AGGATGAATTGATCACCAGAGGT 59.215 43.478 7.22 0.00 41.93 3.85
1535 1690 3.416880 CCCCGGCCCCTGTATTGT 61.417 66.667 0.00 0.00 0.00 2.71
1536 1691 3.093835 TCCCCGGCCCCTGTATTG 61.094 66.667 0.00 0.00 0.00 1.90
1538 1693 3.774336 TCTCCCCGGCCCCTGTAT 61.774 66.667 0.00 0.00 0.00 2.29
1553 1708 2.246091 AGTAGAAGCTCTTGCCCTCT 57.754 50.000 0.00 0.00 40.80 3.69
1772 1954 2.600439 CTCCCTCATGAGCCACTCA 58.400 57.895 17.76 0.00 44.99 3.41
1862 2044 4.336889 ACGTGGTTTGAAATCTCAGAGA 57.663 40.909 1.54 1.54 31.69 3.10
1903 2085 9.573133 TTAGCAAAAAGACAGAAAGAAAGAAAG 57.427 29.630 0.00 0.00 0.00 2.62
1904 2086 9.921637 TTTAGCAAAAAGACAGAAAGAAAGAAA 57.078 25.926 0.00 0.00 0.00 2.52
1905 2087 9.921637 TTTTAGCAAAAAGACAGAAAGAAAGAA 57.078 25.926 0.00 0.00 31.04 2.52
1932 2114 2.614057 CAGAAATCAGCCACCGGATTAC 59.386 50.000 9.46 0.00 35.29 1.89
1934 2116 1.683011 CCAGAAATCAGCCACCGGATT 60.683 52.381 9.46 0.00 37.45 3.01
1935 2117 0.107017 CCAGAAATCAGCCACCGGAT 60.107 55.000 9.46 0.00 0.00 4.18
1936 2118 1.198094 TCCAGAAATCAGCCACCGGA 61.198 55.000 9.46 0.00 0.00 5.14
1937 2119 0.107017 ATCCAGAAATCAGCCACCGG 60.107 55.000 0.00 0.00 0.00 5.28
1940 2122 3.084039 TCACAATCCAGAAATCAGCCAC 58.916 45.455 0.00 0.00 0.00 5.01
1945 2127 4.819088 TCGTTGTTCACAATCCAGAAATCA 59.181 37.500 0.00 0.00 38.24 2.57
1953 2148 5.151389 GTGGTAAATCGTTGTTCACAATCC 58.849 41.667 0.00 0.00 38.24 3.01
1958 2153 8.736751 AATAAATGTGGTAAATCGTTGTTCAC 57.263 30.769 0.00 0.00 0.00 3.18
2025 2853 4.142534 CGTGCATCCAATCAAAGTCAGATT 60.143 41.667 0.00 0.00 36.19 2.40
2047 2879 1.133598 TCACGTACCTATCCAACTGCG 59.866 52.381 0.00 0.00 0.00 5.18
2312 3144 4.697756 TGTAGCGGTGGTGCTGGC 62.698 66.667 0.00 0.00 46.70 4.85
2326 3158 1.585267 CTGCATGCCGTTGCCTTGTA 61.585 55.000 16.68 0.00 42.06 2.41
2548 3407 0.179121 CATCTGCCCGTTGTACGCTA 60.179 55.000 0.00 0.00 40.91 4.26
2549 3408 1.447838 CATCTGCCCGTTGTACGCT 60.448 57.895 0.00 0.00 40.91 5.07
2550 3409 3.089784 CATCTGCCCGTTGTACGC 58.910 61.111 0.00 0.00 40.91 4.42
2551 3410 3.089784 GCATCTGCCCGTTGTACG 58.910 61.111 0.00 0.00 42.11 3.67
2607 3466 3.419759 CTGCCCGTTGTACGCCAC 61.420 66.667 0.00 0.00 40.91 5.01
2608 3467 2.949909 ATCTGCCCGTTGTACGCCA 61.950 57.895 0.00 0.00 40.91 5.69
2609 3468 2.125269 ATCTGCCCGTTGTACGCC 60.125 61.111 0.00 0.00 40.91 5.68
2610 3469 3.089784 CATCTGCCCGTTGTACGC 58.910 61.111 0.00 0.00 40.91 4.42
2611 3470 3.089784 GCATCTGCCCGTTGTACG 58.910 61.111 0.00 0.00 42.11 3.67
2651 3510 4.692475 ACCTGCCCGTTGTACGCC 62.692 66.667 0.00 0.00 40.91 5.68
2652 3511 3.419759 CACCTGCCCGTTGTACGC 61.420 66.667 0.00 0.00 40.91 4.42
2653 3512 2.740826 CCACCTGCCCGTTGTACG 60.741 66.667 0.00 0.00 42.11 3.67
2654 3513 3.053896 GCCACCTGCCCGTTGTAC 61.054 66.667 0.00 0.00 0.00 2.90
2655 3514 4.690719 CGCCACCTGCCCGTTGTA 62.691 66.667 0.00 0.00 36.24 2.41
2657 3516 4.690719 TACGCCACCTGCCCGTTG 62.691 66.667 0.00 0.00 36.51 4.10
2658 3517 4.692475 GTACGCCACCTGCCCGTT 62.692 66.667 0.00 0.00 36.51 4.44
2660 3519 4.690719 TTGTACGCCACCTGCCCG 62.691 66.667 0.00 0.00 36.24 6.13
2661 3520 3.053896 GTTGTACGCCACCTGCCC 61.054 66.667 0.00 0.00 36.24 5.36
2662 3521 3.419759 CGTTGTACGCCACCTGCC 61.420 66.667 0.00 0.00 33.65 4.85
2663 3522 3.419759 CCGTTGTACGCCACCTGC 61.420 66.667 0.00 0.00 40.91 4.85
2664 3523 2.740826 CCCGTTGTACGCCACCTG 60.741 66.667 0.00 0.00 40.91 4.00
2665 3524 4.692475 GCCCGTTGTACGCCACCT 62.692 66.667 0.00 0.00 40.91 4.00
2666 3525 4.992511 TGCCCGTTGTACGCCACC 62.993 66.667 0.00 0.00 40.91 4.61
2667 3526 3.419759 CTGCCCGTTGTACGCCAC 61.420 66.667 0.00 0.00 40.91 5.01
2668 3527 2.949909 ATCTGCCCGTTGTACGCCA 61.950 57.895 0.00 0.00 40.91 5.69
2669 3528 2.125269 ATCTGCCCGTTGTACGCC 60.125 61.111 0.00 0.00 40.91 5.68
2670 3529 3.089784 CATCTGCCCGTTGTACGC 58.910 61.111 0.00 0.00 40.91 4.42
2671 3530 3.089784 GCATCTGCCCGTTGTACG 58.910 61.111 0.00 0.00 42.11 3.67
2751 3610 2.666862 CTGCCCGTTGTACGCCAA 60.667 61.111 0.00 0.00 40.91 4.52
2752 3611 4.690719 CCTGCCCGTTGTACGCCA 62.691 66.667 0.00 0.00 40.91 5.69
2753 3612 4.692475 ACCTGCCCGTTGTACGCC 62.692 66.667 0.00 0.00 40.91 5.68
2754 3613 3.419759 CACCTGCCCGTTGTACGC 61.420 66.667 0.00 0.00 40.91 4.42
2755 3614 3.419759 GCACCTGCCCGTTGTACG 61.420 66.667 0.00 0.00 42.11 3.67
2844 3703 2.787473 TTCTGACCATAGCTGTTGGG 57.213 50.000 18.59 7.64 38.64 4.12
2845 3704 3.875727 CAGATTCTGACCATAGCTGTTGG 59.124 47.826 8.00 14.23 40.26 3.77
3062 4017 2.030551 CTGCTGGCGCATCATGAAT 58.969 52.632 10.83 0.00 46.74 2.57
3091 4046 1.004610 GGTGCATCATGAACGACATCG 60.005 52.381 0.00 0.00 46.33 3.84
3125 4080 1.241990 ACTGTTGCTGCTGCTGATGG 61.242 55.000 17.00 5.98 40.48 3.51
3126 4081 1.129998 GTACTGTTGCTGCTGCTGATG 59.870 52.381 17.00 7.29 40.48 3.07
3128 4083 0.394192 AGTACTGTTGCTGCTGCTGA 59.606 50.000 17.00 2.73 40.48 4.26
3164 4131 4.377897 CCCCTTCGTGGTGATAGTAATTC 58.622 47.826 0.00 0.00 0.00 2.17
3199 4166 0.889638 TGGAGAACTGCTCGTCGTCT 60.890 55.000 0.00 0.00 44.91 4.18
3292 4259 0.467290 ATCCCCGTTGTTGTTGCAGT 60.467 50.000 0.00 0.00 0.00 4.40
3295 4262 0.943835 GCAATCCCCGTTGTTGTTGC 60.944 55.000 0.00 0.00 35.74 4.17
3378 4345 3.785859 GCCATCACCCTCTGCCGA 61.786 66.667 0.00 0.00 0.00 5.54
3429 4396 4.782195 GCAATACATAGTACACTTGCGTGC 60.782 45.833 0.00 0.00 45.10 5.34
3430 4397 4.328712 TGCAATACATAGTACACTTGCGTG 59.671 41.667 0.00 0.00 46.63 5.34
3443 4410 5.720371 AACAAGGCTTTGTGCAATACATA 57.280 34.783 15.63 0.00 46.54 2.29
3541 4545 7.334421 GGAAACACATCATACATACAGTTGACT 59.666 37.037 0.00 0.00 0.00 3.41
3542 4546 7.334421 AGGAAACACATCATACATACAGTTGAC 59.666 37.037 0.00 0.00 0.00 3.18
3543 4547 7.334171 CAGGAAACACATCATACATACAGTTGA 59.666 37.037 0.00 0.00 0.00 3.18
3544 4548 7.334171 TCAGGAAACACATCATACATACAGTTG 59.666 37.037 0.00 0.00 0.00 3.16
3545 4549 7.394016 TCAGGAAACACATCATACATACAGTT 58.606 34.615 0.00 0.00 0.00 3.16
3547 4551 7.848223 TTCAGGAAACACATCATACATACAG 57.152 36.000 0.00 0.00 0.00 2.74
3548 4552 8.676401 CAATTCAGGAAACACATCATACATACA 58.324 33.333 0.00 0.00 0.00 2.29
3549 4553 7.645340 GCAATTCAGGAAACACATCATACATAC 59.355 37.037 0.00 0.00 0.00 2.39
3550 4554 7.338957 TGCAATTCAGGAAACACATCATACATA 59.661 33.333 0.00 0.00 0.00 2.29
3551 4555 6.153170 TGCAATTCAGGAAACACATCATACAT 59.847 34.615 0.00 0.00 0.00 2.29
3558 4562 4.624015 CTGTTGCAATTCAGGAAACACAT 58.376 39.130 0.59 0.00 0.00 3.21
3709 5115 1.202222 CGGCATCAATCAACTTCTGGC 60.202 52.381 0.00 0.00 0.00 4.85
3711 5117 2.096496 GGTCGGCATCAATCAACTTCTG 59.904 50.000 0.00 0.00 0.00 3.02
3713 5119 1.062587 CGGTCGGCATCAATCAACTTC 59.937 52.381 0.00 0.00 0.00 3.01
3714 5120 1.086696 CGGTCGGCATCAATCAACTT 58.913 50.000 0.00 0.00 0.00 2.66
3747 5171 3.319755 CACATCCATGTTTTGCTGTTCC 58.680 45.455 0.00 0.00 39.39 3.62
3770 5195 2.733218 TTCGTTGCTCGCCAGTCG 60.733 61.111 0.00 0.00 39.67 4.18
3771 5196 2.853914 GTTCGTTGCTCGCCAGTC 59.146 61.111 0.00 0.00 39.67 3.51
3772 5197 3.036084 CGTTCGTTGCTCGCCAGT 61.036 61.111 0.00 0.00 39.67 4.00
3773 5198 4.430423 GCGTTCGTTGCTCGCCAG 62.430 66.667 0.00 0.00 43.41 4.85
3813 5238 2.159014 TCTGTTCGTGTTGTAGGCTTGT 60.159 45.455 0.00 0.00 0.00 3.16
3814 5239 2.479837 TCTGTTCGTGTTGTAGGCTTG 58.520 47.619 0.00 0.00 0.00 4.01
3816 5241 2.902705 TTCTGTTCGTGTTGTAGGCT 57.097 45.000 0.00 0.00 0.00 4.58
3817 5242 2.092211 CGATTCTGTTCGTGTTGTAGGC 59.908 50.000 0.00 0.00 34.46 3.93
3818 5243 3.972706 CGATTCTGTTCGTGTTGTAGG 57.027 47.619 0.00 0.00 34.46 3.18
3855 5280 2.286418 CGAGCCAACCATTTTATCTCGC 60.286 50.000 0.00 0.00 36.13 5.03
4029 5472 3.706373 GAGAGGGGCGGTGCTGAA 61.706 66.667 0.00 0.00 0.00 3.02
4141 5590 2.492090 CTTCGCCTCTCCTCACGG 59.508 66.667 0.00 0.00 0.00 4.94
4146 5595 3.144193 CTCGCCTTCGCCTCTCCT 61.144 66.667 0.00 0.00 35.26 3.69
4156 5605 2.581354 CCACTGCTAGCTCGCCTT 59.419 61.111 17.23 0.00 0.00 4.35
4157 5606 3.465403 CCCACTGCTAGCTCGCCT 61.465 66.667 17.23 0.00 0.00 5.52
4158 5607 3.775654 ACCCACTGCTAGCTCGCC 61.776 66.667 17.23 0.00 0.00 5.54
4159 5608 2.510238 CACCCACTGCTAGCTCGC 60.510 66.667 17.23 2.68 0.00 5.03
4160 5609 2.185350 CCACCCACTGCTAGCTCG 59.815 66.667 17.23 9.58 0.00 5.03
4161 5610 1.219393 GACCACCCACTGCTAGCTC 59.781 63.158 17.23 0.00 0.00 4.09
4166 5615 2.078665 AACCTGACCACCCACTGCT 61.079 57.895 0.00 0.00 0.00 4.24
4183 5632 1.079825 TCCCTCCCTACAAGGCTACAA 59.920 52.381 0.00 0.00 32.73 2.41
4184 5633 0.714180 TCCCTCCCTACAAGGCTACA 59.286 55.000 0.00 0.00 32.73 2.74
4187 5636 0.760945 CGATCCCTCCCTACAAGGCT 60.761 60.000 0.00 0.00 32.73 4.58
4188 5637 1.049289 ACGATCCCTCCCTACAAGGC 61.049 60.000 0.00 0.00 32.73 4.35
4189 5638 0.753262 CACGATCCCTCCCTACAAGG 59.247 60.000 0.00 0.00 34.30 3.61
4204 5653 3.317149 TCGGTTTCTCTCTTTCTTCACGA 59.683 43.478 0.00 0.00 0.00 4.35
4245 5694 5.221441 TGGTATAAATCACATCAGAGGTCCG 60.221 44.000 0.00 0.00 0.00 4.79
4251 5713 4.377021 GCGGTGGTATAAATCACATCAGA 58.623 43.478 0.00 0.00 35.74 3.27
4253 5715 3.472652 GGCGGTGGTATAAATCACATCA 58.527 45.455 0.00 0.00 35.74 3.07
4255 5717 2.158871 ACGGCGGTGGTATAAATCACAT 60.159 45.455 13.24 0.00 35.74 3.21
4256 5718 1.207570 ACGGCGGTGGTATAAATCACA 59.792 47.619 13.24 0.00 35.74 3.58
4257 5719 1.944032 ACGGCGGTGGTATAAATCAC 58.056 50.000 13.24 0.00 0.00 3.06
4258 5720 2.695127 AACGGCGGTGGTATAAATCA 57.305 45.000 13.24 0.00 0.00 2.57
4259 5721 3.456280 TGTAACGGCGGTGGTATAAATC 58.544 45.455 8.19 0.00 0.00 2.17
4260 5722 3.540314 TGTAACGGCGGTGGTATAAAT 57.460 42.857 8.19 0.00 0.00 1.40
4261 5723 3.540314 ATGTAACGGCGGTGGTATAAA 57.460 42.857 8.19 0.00 0.00 1.40
4262 5724 3.540314 AATGTAACGGCGGTGGTATAA 57.460 42.857 8.19 0.00 0.00 0.98
4263 5725 3.888323 TCTAATGTAACGGCGGTGGTATA 59.112 43.478 8.19 0.00 0.00 1.47
4264 5726 2.694628 TCTAATGTAACGGCGGTGGTAT 59.305 45.455 8.19 0.00 0.00 2.73
4265 5727 2.098614 TCTAATGTAACGGCGGTGGTA 58.901 47.619 8.19 0.00 0.00 3.25
4266 5728 0.896923 TCTAATGTAACGGCGGTGGT 59.103 50.000 8.19 0.00 0.00 4.16
4267 5729 1.567504 CTCTAATGTAACGGCGGTGG 58.432 55.000 8.19 0.00 0.00 4.61
4268 5730 1.567504 CCTCTAATGTAACGGCGGTG 58.432 55.000 8.19 0.00 0.00 4.94
4269 5731 0.179092 GCCTCTAATGTAACGGCGGT 60.179 55.000 13.24 7.51 0.00 5.68
4270 5732 0.179094 TGCCTCTAATGTAACGGCGG 60.179 55.000 13.24 0.00 43.54 6.13
4271 5733 1.209128 CTGCCTCTAATGTAACGGCG 58.791 55.000 4.80 4.80 43.54 6.46
4272 5734 1.583054 CCTGCCTCTAATGTAACGGC 58.417 55.000 0.00 0.00 41.06 5.68
4273 5735 1.810412 GCCCTGCCTCTAATGTAACGG 60.810 57.143 0.00 0.00 0.00 4.44
4274 5736 1.134521 TGCCCTGCCTCTAATGTAACG 60.135 52.381 0.00 0.00 0.00 3.18
4275 5737 2.565841 CTGCCCTGCCTCTAATGTAAC 58.434 52.381 0.00 0.00 0.00 2.50
4276 5738 1.490490 CCTGCCCTGCCTCTAATGTAA 59.510 52.381 0.00 0.00 0.00 2.41
4277 5739 1.131638 CCTGCCCTGCCTCTAATGTA 58.868 55.000 0.00 0.00 0.00 2.29
4278 5740 1.918253 CCTGCCCTGCCTCTAATGT 59.082 57.895 0.00 0.00 0.00 2.71
4332 5796 4.752879 TTCCCGCCGCTTTCCGAG 62.753 66.667 0.00 0.00 40.02 4.63
4333 5797 4.752879 CTTCCCGCCGCTTTCCGA 62.753 66.667 0.00 0.00 40.02 4.55
4361 5825 2.663196 CCACCTCTTCCGGTCCAC 59.337 66.667 0.00 0.00 34.29 4.02
4376 5840 4.675303 CTCACCCCCAGTCCCCCA 62.675 72.222 0.00 0.00 0.00 4.96
4404 5868 1.215647 CCTCACCGTCCAGCAGTAC 59.784 63.158 0.00 0.00 0.00 2.73
4449 5916 3.889692 CCCACCCACCAGTGTGCT 61.890 66.667 0.00 0.00 41.35 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.