Multiple sequence alignment - TraesCS6D01G278800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G278800 chr6D 100.000 6798 0 0 1 6798 387049868 387043071 0.000000e+00 12554.0
1 TraesCS6D01G278800 chr6D 83.642 703 84 23 6112 6798 386951051 386950364 3.460000e-177 632.0
2 TraesCS6D01G278800 chr6D 85.577 416 34 14 2674 3065 356800750 356800337 4.910000e-111 412.0
3 TraesCS6D01G278800 chr6D 85.411 377 35 19 2686 3052 387046817 387047183 2.320000e-99 374.0
4 TraesCS6D01G278800 chr6B 89.604 2501 128 43 1 2424 578407239 578404794 0.000000e+00 3057.0
5 TraesCS6D01G278800 chr6B 90.671 1983 108 35 4858 6796 578402899 578400950 0.000000e+00 2566.0
6 TraesCS6D01G278800 chr6B 91.408 1804 50 40 3097 4842 578404713 578402957 0.000000e+00 2375.0
7 TraesCS6D01G278800 chr6B 95.606 751 33 0 6048 6798 578302403 578301653 0.000000e+00 1205.0
8 TraesCS6D01G278800 chr6B 84.425 565 71 8 6247 6798 578213720 578213160 2.160000e-149 540.0
9 TraesCS6D01G278800 chr6B 87.129 101 13 0 1 101 337836968 337837068 1.550000e-21 115.0
10 TraesCS6D01G278800 chr6A 86.918 2599 171 56 1 2485 532342750 532340207 0.000000e+00 2760.0
11 TraesCS6D01G278800 chr6A 94.419 1093 35 10 4900 5975 532338122 532337039 0.000000e+00 1657.0
12 TraesCS6D01G278800 chr6A 87.474 1421 68 40 3487 4842 532339600 532338225 0.000000e+00 1537.0
13 TraesCS6D01G278800 chr6A 92.028 853 22 11 5972 6798 532319119 532318287 0.000000e+00 1157.0
14 TraesCS6D01G278800 chr6A 82.803 785 96 19 6029 6798 532162954 532162194 0.000000e+00 665.0
15 TraesCS6D01G278800 chr6A 90.201 398 21 7 3075 3467 532340108 532339724 2.830000e-138 503.0
16 TraesCS6D01G278800 chr6A 86.538 104 14 0 1 104 346598309 346598206 1.550000e-21 115.0
17 TraesCS6D01G278800 chr6A 89.247 93 8 2 2535 2626 532340200 532340109 1.550000e-21 115.0
18 TraesCS6D01G278800 chr6A 98.214 56 1 0 2623 2678 502244337 502244282 1.560000e-16 99.0
19 TraesCS6D01G278800 chr6A 98.039 51 1 0 2625 2675 222554898 222554948 9.390000e-14 89.8
20 TraesCS6D01G278800 chr6A 100.000 35 0 0 5941 5975 532336396 532336362 1.580000e-06 65.8
21 TraesCS6D01G278800 chr2D 91.106 416 13 8 2671 3063 617044647 617045061 6.000000e-150 542.0
22 TraesCS6D01G278800 chr2D 88.808 411 22 7 2676 3062 30005193 30004783 3.690000e-132 483.0
23 TraesCS6D01G278800 chr2D 96.296 54 2 0 2622 2675 473292309 473292256 9.390000e-14 89.8
24 TraesCS6D01G278800 chr2D 94.643 56 3 0 2620 2675 388818751 388818806 3.380000e-13 87.9
25 TraesCS6D01G278800 chr5D 90.488 410 16 7 2676 3062 256182474 256182883 2.810000e-143 520.0
26 TraesCS6D01G278800 chr5D 89.435 407 15 14 2679 3061 495365721 495366123 7.920000e-134 488.0
27 TraesCS6D01G278800 chr5D 86.154 455 50 10 1 449 549548992 549548545 4.770000e-131 479.0
28 TraesCS6D01G278800 chr5D 96.226 53 2 0 2623 2675 414223059 414223111 3.380000e-13 87.9
29 TraesCS6D01G278800 chr7A 90.120 415 16 9 2673 3062 63576656 63577070 3.630000e-142 516.0
30 TraesCS6D01G278800 chr3D 90.268 411 16 7 2676 3062 373599813 373599403 3.630000e-142 516.0
31 TraesCS6D01G278800 chr1D 90.291 412 15 9 2674 3061 102156248 102156658 3.630000e-142 516.0
32 TraesCS6D01G278800 chr1D 87.356 87 10 1 305 391 386167801 386167886 1.560000e-16 99.0
33 TraesCS6D01G278800 chr4A 89.806 412 17 6 2676 3062 503613908 503613497 7.870000e-139 505.0
34 TraesCS6D01G278800 chr3A 89.268 410 20 8 2674 3061 125211935 125212342 6.130000e-135 492.0
35 TraesCS6D01G278800 chr7D 89.136 405 25 13 2676 3065 197873081 197873481 2.850000e-133 486.0
36 TraesCS6D01G278800 chr7D 85.117 383 53 3 3 385 69246029 69246407 8.270000e-104 388.0
37 TraesCS6D01G278800 chr7D 96.296 54 2 0 2625 2678 514658913 514658860 9.390000e-14 89.8
38 TraesCS6D01G278800 chr5B 88.808 411 22 7 2675 3063 588793451 588793043 3.690000e-132 483.0
39 TraesCS6D01G278800 chr5B 81.646 316 47 10 4 317 335550774 335550468 1.130000e-62 252.0
40 TraesCS6D01G278800 chr4D 88.517 418 21 9 2675 3066 82742738 82743154 1.330000e-131 481.0
41 TraesCS6D01G278800 chr4D 85.748 421 39 11 2669 3068 449742889 449742469 6.300000e-115 425.0
42 TraesCS6D01G278800 chr3B 84.010 394 44 16 2677 3062 525354366 525354748 1.800000e-95 361.0
43 TraesCS6D01G278800 chr3B 98.148 54 1 0 2625 2678 812340464 812340411 2.020000e-15 95.3
44 TraesCS6D01G278800 chr3B 96.364 55 2 0 2624 2678 505264680 505264626 2.610000e-14 91.6
45 TraesCS6D01G278800 chr3B 96.226 53 2 0 2623 2675 211111353 211111405 3.380000e-13 87.9
46 TraesCS6D01G278800 chr2A 81.894 359 59 5 2 359 758333507 758333860 1.430000e-76 298.0
47 TraesCS6D01G278800 chr2A 80.311 386 68 7 1 384 758315001 758315380 1.120000e-72 285.0
48 TraesCS6D01G278800 chr2B 81.780 236 39 4 2 235 770200310 770200543 1.930000e-45 195.0
49 TraesCS6D01G278800 chr2B 79.570 93 18 1 2429 2521 440733996 440733905 1.580000e-06 65.8
50 TraesCS6D01G278800 chr5A 84.722 72 8 3 2451 2521 324219158 324219089 1.220000e-07 69.4
51 TraesCS6D01G278800 chr5A 79.570 93 18 1 2429 2521 525270558 525270649 1.580000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G278800 chr6D 387043071 387049868 6797 True 12554.0 12554 100.0000 1 6798 1 chr6D.!!$R3 6797
1 TraesCS6D01G278800 chr6D 386950364 386951051 687 True 632.0 632 83.6420 6112 6798 1 chr6D.!!$R2 686
2 TraesCS6D01G278800 chr6B 578400950 578407239 6289 True 2666.0 3057 90.5610 1 6796 3 chr6B.!!$R3 6795
3 TraesCS6D01G278800 chr6B 578301653 578302403 750 True 1205.0 1205 95.6060 6048 6798 1 chr6B.!!$R2 750
4 TraesCS6D01G278800 chr6B 578213160 578213720 560 True 540.0 540 84.4250 6247 6798 1 chr6B.!!$R1 551
5 TraesCS6D01G278800 chr6A 532318287 532319119 832 True 1157.0 1157 92.0280 5972 6798 1 chr6A.!!$R4 826
6 TraesCS6D01G278800 chr6A 532336362 532342750 6388 True 1106.3 2760 91.3765 1 5975 6 chr6A.!!$R5 5974
7 TraesCS6D01G278800 chr6A 532162194 532162954 760 True 665.0 665 82.8030 6029 6798 1 chr6A.!!$R3 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.520404 GGCTCGACTCGTGTAACTCA 59.480 55.0 0.00 0.00 31.75 3.41 F
1264 1350 0.108567 TAGCACGCCGCATACTCAAA 60.109 50.0 0.00 0.00 46.13 2.69 F
2687 2812 0.038526 CTAGCACGGACGTGGAGTTT 60.039 55.0 24.04 0.00 45.49 2.66 F
2926 3051 0.034756 CACGACCTCCACCAATGTGA 59.965 55.0 0.00 0.00 45.76 3.58 F
4466 4824 0.174389 CAGATGTGAGCGCACCTACT 59.826 55.0 18.33 11.13 44.51 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2156 0.606401 CCGACAGTGCAGGGAAACAT 60.606 55.0 0.00 0.00 0.00 2.71 R
2907 3032 0.034756 TCACATTGGTGGAGGTCGTG 59.965 55.0 0.00 0.00 45.32 4.35 R
3661 3954 0.035458 ACAAAGACGGGCAGAGAAGG 59.965 55.0 0.00 0.00 0.00 3.46 R
4476 4834 0.317160 GACATGGGATGGCATGCATG 59.683 55.0 22.70 22.70 38.49 4.06 R
5879 6341 0.954938 TGCGCTGCAGCATTTACAGA 60.955 50.0 36.03 8.95 42.92 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.777095 AGTTTGGCTTGACTTGTTAACATAAA 58.223 30.769 9.56 1.39 0.00 1.40
74 75 0.520404 GGCTCGACTCGTGTAACTCA 59.480 55.000 0.00 0.00 31.75 3.41
84 85 1.910688 GTGTAACTCACGAGCTAGCC 58.089 55.000 12.13 1.79 37.31 3.93
101 102 2.691927 AGCCCGTTTAACTCGTTAAGG 58.308 47.619 2.89 3.12 36.52 2.69
206 207 8.824159 TTTCTTCACAAATCAAAACAGTCAAA 57.176 26.923 0.00 0.00 0.00 2.69
260 261 9.947433 AATCCATAAATGACAACAATCAACAAT 57.053 25.926 0.00 0.00 30.82 2.71
302 303 6.204688 TCATGTCACTTTTGATTAACGAGCTT 59.795 34.615 0.00 0.00 33.11 3.74
303 304 7.386573 TCATGTCACTTTTGATTAACGAGCTTA 59.613 33.333 0.00 0.00 33.11 3.09
384 385 2.617308 TCGGATTAAAGCTCGACTCGAT 59.383 45.455 0.62 0.00 34.61 3.59
472 501 2.304761 ACCGGGTCATCAATTACACTGT 59.695 45.455 6.32 0.00 0.00 3.55
483 512 4.947388 TCAATTACACTGTATTTGCTCCCC 59.053 41.667 14.88 0.00 0.00 4.81
518 547 5.968528 TTACACTGAAGTTGTGGTTTTGT 57.031 34.783 0.00 0.00 39.52 2.83
532 561 3.892588 TGGTTTTGTGTAATGAACTCCCC 59.107 43.478 0.00 0.00 0.00 4.81
543 572 7.007723 TGTAATGAACTCCCCAAAATACACTT 58.992 34.615 0.00 0.00 0.00 3.16
551 598 4.600111 TCCCCAAAATACACTTACCACTCT 59.400 41.667 0.00 0.00 0.00 3.24
553 600 5.280521 CCCCAAAATACACTTACCACTCTCT 60.281 44.000 0.00 0.00 0.00 3.10
557 604 4.966965 ATACACTTACCACTCTCTGTCG 57.033 45.455 0.00 0.00 0.00 4.35
567 614 2.557056 CACTCTCTGTCGACCTTTACCA 59.443 50.000 14.12 0.00 0.00 3.25
569 616 2.557056 CTCTCTGTCGACCTTTACCACA 59.443 50.000 14.12 0.00 0.00 4.17
570 617 3.162666 TCTCTGTCGACCTTTACCACAT 58.837 45.455 14.12 0.00 0.00 3.21
607 654 5.726397 ACCCCAACAGAAAAACTTTGTTAC 58.274 37.500 0.00 0.00 33.57 2.50
609 656 6.040247 CCCCAACAGAAAAACTTTGTTACTC 58.960 40.000 0.00 0.00 33.57 2.59
727 776 5.570234 ACCAAGCTCGTTTCAAGTAAAAA 57.430 34.783 0.00 0.00 0.00 1.94
999 1085 4.477975 CTGCCGACCGACCGACTC 62.478 72.222 0.00 0.00 0.00 3.36
1264 1350 0.108567 TAGCACGCCGCATACTCAAA 60.109 50.000 0.00 0.00 46.13 2.69
1265 1351 0.953471 AGCACGCCGCATACTCAAAA 60.953 50.000 0.00 0.00 46.13 2.44
1271 1357 3.181514 ACGCCGCATACTCAAAATAACAC 60.182 43.478 0.00 0.00 0.00 3.32
1283 1369 6.636850 ACTCAAAATAACACAAGCATTCGTTC 59.363 34.615 0.00 0.00 0.00 3.95
1336 1422 3.188254 GCTTCTTCTGTTTGAGCTTCCTC 59.812 47.826 0.00 0.00 38.62 3.71
1429 1528 2.413453 GAGACGCAATGGAGTGAAAGTC 59.587 50.000 0.00 0.00 34.83 3.01
1459 1559 5.637006 TTTTTCTGAACATAATCGGTGGG 57.363 39.130 0.00 0.00 0.00 4.61
1460 1560 4.561500 TTTCTGAACATAATCGGTGGGA 57.438 40.909 0.00 0.00 0.00 4.37
1461 1561 4.771114 TTCTGAACATAATCGGTGGGAT 57.229 40.909 0.00 0.00 36.78 3.85
1463 1563 4.703897 TCTGAACATAATCGGTGGGATTC 58.296 43.478 0.00 0.00 44.21 2.52
1464 1564 4.408921 TCTGAACATAATCGGTGGGATTCT 59.591 41.667 0.00 0.00 44.21 2.40
1465 1565 4.450976 TGAACATAATCGGTGGGATTCTG 58.549 43.478 0.00 0.00 44.21 3.02
1466 1566 2.851195 ACATAATCGGTGGGATTCTGC 58.149 47.619 2.83 0.00 44.21 4.26
1467 1567 2.172505 ACATAATCGGTGGGATTCTGCA 59.827 45.455 0.00 0.00 44.21 4.41
1468 1568 2.620251 TAATCGGTGGGATTCTGCAG 57.380 50.000 7.63 7.63 44.21 4.41
1469 1569 0.620556 AATCGGTGGGATTCTGCAGT 59.379 50.000 14.67 0.00 41.57 4.40
1474 1574 1.745653 GGTGGGATTCTGCAGTTAAGC 59.254 52.381 14.67 4.08 0.00 3.09
1504 1604 9.271828 CTGAAACTTTGGCCAAATTAATTAAGT 57.728 29.630 30.46 19.10 0.00 2.24
1575 1675 9.270640 GCAATGAACTGAAGTAAGATCAGATAT 57.729 33.333 10.27 0.00 45.74 1.63
1604 1706 1.576421 CCGTTTGTCCTTCTGCTGC 59.424 57.895 0.00 0.00 0.00 5.25
1634 1737 3.685139 TCTCTGGGACTTTTGCTACTG 57.315 47.619 0.00 0.00 0.00 2.74
1650 1756 7.695480 TTGCTACTGGTAGATTTTTGCATTA 57.305 32.000 11.44 0.00 35.21 1.90
1654 1760 7.065803 GCTACTGGTAGATTTTTGCATTACAGA 59.934 37.037 11.44 0.00 35.21 3.41
1657 1763 8.806146 ACTGGTAGATTTTTGCATTACAGAAAT 58.194 29.630 0.00 0.00 43.66 2.17
1688 1795 0.165944 GTGAGCAATCAACCGGTTCG 59.834 55.000 19.24 13.41 0.00 3.95
1704 1811 1.669049 TTCGAGAATTAGCCGCCGGA 61.669 55.000 7.68 0.00 0.00 5.14
1705 1812 1.006102 CGAGAATTAGCCGCCGGAT 60.006 57.895 7.68 1.51 0.00 4.18
1706 1813 0.600255 CGAGAATTAGCCGCCGGATT 60.600 55.000 7.68 0.00 0.00 3.01
1707 1814 1.336517 CGAGAATTAGCCGCCGGATTA 60.337 52.381 7.68 0.00 0.00 1.75
1712 1819 4.935808 AGAATTAGCCGCCGGATTAATTAG 59.064 41.667 19.42 0.00 30.15 1.73
1713 1820 3.756933 TTAGCCGCCGGATTAATTAGT 57.243 42.857 7.68 0.00 0.00 2.24
1720 1827 5.220912 GCCGCCGGATTAATTAGTTTAGTTT 60.221 40.000 7.68 0.00 0.00 2.66
1724 1831 7.191551 GCCGGATTAATTAGTTTAGTTTGTCC 58.808 38.462 5.05 0.00 0.00 4.02
1728 1835 9.159364 GGATTAATTAGTTTAGTTTGTCCGAGT 57.841 33.333 0.00 0.00 0.00 4.18
1880 1988 3.349006 GTGCTGACCACGCCTGTG 61.349 66.667 0.00 0.00 46.00 3.66
1967 2075 2.289444 ACAACCATCGACCGTTCTCAAT 60.289 45.455 0.00 0.00 0.00 2.57
2014 2124 6.625532 AAGGGTGAATTTTATTGGCTTGAT 57.374 33.333 0.00 0.00 0.00 2.57
2036 2146 7.284074 TGATATTTTCCGGGAGTATAAGCAAA 58.716 34.615 0.00 0.00 0.00 3.68
2039 2149 5.828299 TTTCCGGGAGTATAAGCAAAATG 57.172 39.130 0.00 0.00 0.00 2.32
2046 2156 5.417580 GGGAGTATAAGCAAAATGTTGTCCA 59.582 40.000 0.00 0.00 37.06 4.02
2079 2189 0.602638 TGTCGGCGTCAAATGCTCTT 60.603 50.000 6.85 0.00 0.00 2.85
2105 2215 4.478203 TCCACTGGATCAAAATCAACCAA 58.522 39.130 0.00 0.00 33.21 3.67
2171 2292 2.419297 GGTCCTGCTGTCCTCATTACAG 60.419 54.545 0.00 0.00 45.80 2.74
2238 2359 3.853181 TCCACAATTATGGTCACCCCTTA 59.147 43.478 1.95 0.00 40.95 2.69
2251 2372 5.278610 GGTCACCCCTTACATAAACAAACAC 60.279 44.000 0.00 0.00 0.00 3.32
2302 2424 4.021544 AGCTGTTTGACTTTCACCACAAAA 60.022 37.500 0.00 0.00 34.76 2.44
2306 2428 6.696411 TGTTTGACTTTCACCACAAAAATCT 58.304 32.000 0.00 0.00 34.76 2.40
2402 2527 3.372660 CGAAGGAGGACTGTAATAGCC 57.627 52.381 0.00 0.00 0.00 3.93
2410 2535 2.101917 GGACTGTAATAGCCGGCTAACA 59.898 50.000 38.14 33.41 31.73 2.41
2415 2540 2.902705 AATAGCCGGCTAACATTCGA 57.097 45.000 38.14 17.36 31.73 3.71
2427 2552 2.577606 ACATTCGATGTTTGGGGTGA 57.422 45.000 0.00 0.00 41.63 4.02
2433 2558 2.556189 TCGATGTTTGGGGTGACATTTG 59.444 45.455 0.00 0.00 36.67 2.32
2438 2563 1.626686 TTGGGGTGACATTTGCGAAT 58.373 45.000 0.00 0.00 0.00 3.34
2439 2564 2.498644 TGGGGTGACATTTGCGAATA 57.501 45.000 0.00 0.00 0.00 1.75
2444 2569 4.803613 GGGGTGACATTTGCGAATATTTTC 59.196 41.667 0.00 0.00 0.00 2.29
2445 2570 5.406649 GGGTGACATTTGCGAATATTTTCA 58.593 37.500 0.00 0.00 0.00 2.69
2447 2572 5.861251 GGTGACATTTGCGAATATTTTCACA 59.139 36.000 20.62 6.14 0.00 3.58
2448 2573 6.033831 GGTGACATTTGCGAATATTTTCACAG 59.966 38.462 20.62 3.90 0.00 3.66
2463 2588 7.814264 ATTTTCACAGACAGTTTCTTCAGAT 57.186 32.000 0.00 0.00 28.96 2.90
2464 2589 7.630242 TTTTCACAGACAGTTTCTTCAGATT 57.370 32.000 0.00 0.00 28.96 2.40
2465 2590 6.851222 TTCACAGACAGTTTCTTCAGATTC 57.149 37.500 0.00 0.00 28.96 2.52
2466 2591 5.917462 TCACAGACAGTTTCTTCAGATTCA 58.083 37.500 0.00 0.00 28.96 2.57
2467 2592 5.755375 TCACAGACAGTTTCTTCAGATTCAC 59.245 40.000 0.00 0.00 28.96 3.18
2472 2597 6.426328 AGACAGTTTCTTCAGATTCACATGAC 59.574 38.462 0.00 0.00 0.00 3.06
2474 2599 6.713903 ACAGTTTCTTCAGATTCACATGACAT 59.286 34.615 0.00 0.00 0.00 3.06
2482 2607 8.806177 TTCAGATTCACATGACATTTTCTTTG 57.194 30.769 0.00 0.00 0.00 2.77
2483 2608 7.372714 TCAGATTCACATGACATTTTCTTTGG 58.627 34.615 0.00 0.00 0.00 3.28
2484 2609 7.231115 TCAGATTCACATGACATTTTCTTTGGA 59.769 33.333 0.00 0.00 0.00 3.53
2485 2610 7.868922 CAGATTCACATGACATTTTCTTTGGAA 59.131 33.333 0.00 0.00 0.00 3.53
2486 2611 8.591072 AGATTCACATGACATTTTCTTTGGAAT 58.409 29.630 0.00 0.00 0.00 3.01
2487 2612 9.859427 GATTCACATGACATTTTCTTTGGAATA 57.141 29.630 0.00 0.00 0.00 1.75
2514 2639 5.930135 TGATATGTTTCTTTAGAGGGAGGC 58.070 41.667 0.00 0.00 0.00 4.70
2515 2640 5.428457 TGATATGTTTCTTTAGAGGGAGGCA 59.572 40.000 0.00 0.00 0.00 4.75
2516 2641 4.870021 ATGTTTCTTTAGAGGGAGGCAT 57.130 40.909 0.00 0.00 0.00 4.40
2517 2642 4.657814 TGTTTCTTTAGAGGGAGGCATT 57.342 40.909 0.00 0.00 0.00 3.56
2518 2643 4.998051 TGTTTCTTTAGAGGGAGGCATTT 58.002 39.130 0.00 0.00 0.00 2.32
2519 2644 5.393866 TGTTTCTTTAGAGGGAGGCATTTT 58.606 37.500 0.00 0.00 0.00 1.82
2520 2645 5.838521 TGTTTCTTTAGAGGGAGGCATTTTT 59.161 36.000 0.00 0.00 0.00 1.94
2521 2646 6.015434 TGTTTCTTTAGAGGGAGGCATTTTTC 60.015 38.462 0.00 0.00 0.00 2.29
2522 2647 4.600062 TCTTTAGAGGGAGGCATTTTTCC 58.400 43.478 0.00 0.00 0.00 3.13
2523 2648 4.292306 TCTTTAGAGGGAGGCATTTTTCCT 59.708 41.667 0.00 0.00 36.46 3.36
2547 2672 8.700051 CCTCAGAGGAAGTCATATTTCTTCTAA 58.300 37.037 11.62 0.00 38.47 2.10
2571 2696 1.724623 TGTTACTGTTTGATCTCGCGC 59.275 47.619 0.00 0.00 0.00 6.86
2601 2726 4.660938 GTTCGCTTGCCACCCCCT 62.661 66.667 0.00 0.00 0.00 4.79
2602 2727 4.344865 TTCGCTTGCCACCCCCTC 62.345 66.667 0.00 0.00 0.00 4.30
2605 2730 3.015145 GCTTGCCACCCCCTCCTA 61.015 66.667 0.00 0.00 0.00 2.94
2606 2731 3.049080 GCTTGCCACCCCCTCCTAG 62.049 68.421 0.00 0.00 0.00 3.02
2626 2751 1.303309 GGACCGCTCGCTAGTTAGTA 58.697 55.000 0.00 0.00 0.00 1.82
2627 2752 1.003008 GGACCGCTCGCTAGTTAGTAC 60.003 57.143 0.00 0.00 0.00 2.73
2628 2753 1.939255 GACCGCTCGCTAGTTAGTACT 59.061 52.381 0.00 0.00 38.44 2.73
2629 2754 1.939255 ACCGCTCGCTAGTTAGTACTC 59.061 52.381 0.00 0.00 35.78 2.59
2630 2755 1.263752 CCGCTCGCTAGTTAGTACTCC 59.736 57.143 0.00 0.00 35.78 3.85
2631 2756 1.263752 CGCTCGCTAGTTAGTACTCCC 59.736 57.143 0.00 0.00 35.78 4.30
2632 2757 2.574450 GCTCGCTAGTTAGTACTCCCT 58.426 52.381 0.00 0.00 35.78 4.20
2633 2758 2.549329 GCTCGCTAGTTAGTACTCCCTC 59.451 54.545 0.00 0.00 35.78 4.30
2634 2759 3.745163 GCTCGCTAGTTAGTACTCCCTCT 60.745 52.174 0.00 0.00 35.78 3.69
2635 2760 3.806380 TCGCTAGTTAGTACTCCCTCTG 58.194 50.000 0.00 0.00 35.78 3.35
2636 2761 3.199508 TCGCTAGTTAGTACTCCCTCTGT 59.800 47.826 0.00 0.00 35.78 3.41
2637 2762 3.946558 CGCTAGTTAGTACTCCCTCTGTT 59.053 47.826 0.00 0.00 35.78 3.16
2638 2763 4.035441 CGCTAGTTAGTACTCCCTCTGTTC 59.965 50.000 0.00 0.00 35.78 3.18
2639 2764 4.338964 GCTAGTTAGTACTCCCTCTGTTCC 59.661 50.000 0.00 0.00 35.78 3.62
2640 2765 4.399483 AGTTAGTACTCCCTCTGTTCCA 57.601 45.455 0.00 0.00 0.00 3.53
2641 2766 4.949121 AGTTAGTACTCCCTCTGTTCCAT 58.051 43.478 0.00 0.00 0.00 3.41
2642 2767 6.088541 AGTTAGTACTCCCTCTGTTCCATA 57.911 41.667 0.00 0.00 0.00 2.74
2643 2768 6.684538 AGTTAGTACTCCCTCTGTTCCATAT 58.315 40.000 0.00 0.00 0.00 1.78
2644 2769 7.133483 AGTTAGTACTCCCTCTGTTCCATATT 58.867 38.462 0.00 0.00 0.00 1.28
2645 2770 8.287350 AGTTAGTACTCCCTCTGTTCCATATTA 58.713 37.037 0.00 0.00 0.00 0.98
2646 2771 8.578151 GTTAGTACTCCCTCTGTTCCATATTAG 58.422 40.741 0.00 0.00 0.00 1.73
2647 2772 6.684538 AGTACTCCCTCTGTTCCATATTAGT 58.315 40.000 0.00 0.00 0.00 2.24
2648 2773 7.133483 AGTACTCCCTCTGTTCCATATTAGTT 58.867 38.462 0.00 0.00 0.00 2.24
2649 2774 6.240549 ACTCCCTCTGTTCCATATTAGTTG 57.759 41.667 0.00 0.00 0.00 3.16
2650 2775 5.726793 ACTCCCTCTGTTCCATATTAGTTGT 59.273 40.000 0.00 0.00 0.00 3.32
2651 2776 6.127026 ACTCCCTCTGTTCCATATTAGTTGTC 60.127 42.308 0.00 0.00 0.00 3.18
2652 2777 5.050490 CCCTCTGTTCCATATTAGTTGTCG 58.950 45.833 0.00 0.00 0.00 4.35
2653 2778 4.508124 CCTCTGTTCCATATTAGTTGTCGC 59.492 45.833 0.00 0.00 0.00 5.19
2654 2779 5.339008 TCTGTTCCATATTAGTTGTCGCT 57.661 39.130 0.00 0.00 0.00 4.93
2655 2780 5.348986 TCTGTTCCATATTAGTTGTCGCTC 58.651 41.667 0.00 0.00 0.00 5.03
2656 2781 5.079689 TGTTCCATATTAGTTGTCGCTCA 57.920 39.130 0.00 0.00 0.00 4.26
2657 2782 5.483811 TGTTCCATATTAGTTGTCGCTCAA 58.516 37.500 0.00 0.00 0.00 3.02
2658 2783 5.935206 TGTTCCATATTAGTTGTCGCTCAAA 59.065 36.000 0.00 0.00 37.81 2.69
2659 2784 6.128391 TGTTCCATATTAGTTGTCGCTCAAAC 60.128 38.462 0.00 0.00 37.81 2.93
2660 2785 4.565166 TCCATATTAGTTGTCGCTCAAACG 59.435 41.667 0.00 0.00 37.81 3.60
2661 2786 4.260212 CCATATTAGTTGTCGCTCAAACGG 60.260 45.833 0.00 0.00 37.81 4.44
2662 2787 2.512485 TTAGTTGTCGCTCAAACGGA 57.488 45.000 0.00 0.00 37.81 4.69
2663 2788 2.736144 TAGTTGTCGCTCAAACGGAT 57.264 45.000 0.00 0.00 37.81 4.18
2664 2789 1.148310 AGTTGTCGCTCAAACGGATG 58.852 50.000 0.00 0.00 37.81 3.51
2665 2790 0.865769 GTTGTCGCTCAAACGGATGT 59.134 50.000 0.00 0.00 37.81 3.06
2666 2791 2.063266 GTTGTCGCTCAAACGGATGTA 58.937 47.619 0.00 0.00 37.81 2.29
2667 2792 2.665649 TGTCGCTCAAACGGATGTAT 57.334 45.000 0.00 0.00 0.00 2.29
2668 2793 2.536365 TGTCGCTCAAACGGATGTATC 58.464 47.619 0.00 0.00 0.00 2.24
2669 2794 2.165641 TGTCGCTCAAACGGATGTATCT 59.834 45.455 0.00 0.00 0.00 1.98
2670 2795 3.379057 TGTCGCTCAAACGGATGTATCTA 59.621 43.478 0.00 0.00 0.00 1.98
2671 2796 3.975670 GTCGCTCAAACGGATGTATCTAG 59.024 47.826 0.00 0.00 0.00 2.43
2672 2797 2.726760 CGCTCAAACGGATGTATCTAGC 59.273 50.000 0.00 0.00 0.00 3.42
2673 2798 3.717707 GCTCAAACGGATGTATCTAGCA 58.282 45.455 0.00 0.00 0.00 3.49
2674 2799 3.491267 GCTCAAACGGATGTATCTAGCAC 59.509 47.826 0.00 0.00 0.00 4.40
2675 2800 3.702330 TCAAACGGATGTATCTAGCACG 58.298 45.455 0.00 0.00 0.00 5.34
2676 2801 2.794910 CAAACGGATGTATCTAGCACGG 59.205 50.000 0.00 0.00 0.00 4.94
2677 2802 1.977056 ACGGATGTATCTAGCACGGA 58.023 50.000 0.00 0.00 0.00 4.69
2678 2803 1.607628 ACGGATGTATCTAGCACGGAC 59.392 52.381 0.00 0.00 0.00 4.79
2679 2804 1.399855 CGGATGTATCTAGCACGGACG 60.400 57.143 0.00 0.00 0.00 4.79
2680 2805 1.607628 GGATGTATCTAGCACGGACGT 59.392 52.381 0.00 0.00 0.00 4.34
2682 2807 0.736636 TGTATCTAGCACGGACGTGG 59.263 55.000 24.04 9.65 45.49 4.94
2683 2808 1.019673 GTATCTAGCACGGACGTGGA 58.980 55.000 24.04 14.28 45.49 4.02
2684 2809 1.002684 GTATCTAGCACGGACGTGGAG 60.003 57.143 24.04 1.83 45.49 3.86
2685 2810 0.680280 ATCTAGCACGGACGTGGAGT 60.680 55.000 24.04 3.75 45.49 3.85
2686 2811 0.892358 TCTAGCACGGACGTGGAGTT 60.892 55.000 24.04 1.55 45.49 3.01
2687 2812 0.038526 CTAGCACGGACGTGGAGTTT 60.039 55.000 24.04 0.00 45.49 2.66
2688 2813 0.038892 TAGCACGGACGTGGAGTTTC 60.039 55.000 24.04 8.15 45.49 2.78
2689 2814 1.300697 GCACGGACGTGGAGTTTCT 60.301 57.895 24.04 0.00 45.49 2.52
2690 2815 0.038892 GCACGGACGTGGAGTTTCTA 60.039 55.000 24.04 0.00 45.49 2.10
2691 2816 1.694639 CACGGACGTGGAGTTTCTAC 58.305 55.000 16.46 0.00 42.00 2.59
2692 2817 1.001048 CACGGACGTGGAGTTTCTACA 60.001 52.381 16.46 0.00 42.00 2.74
2693 2818 1.000938 ACGGACGTGGAGTTTCTACAC 60.001 52.381 0.00 2.35 41.58 2.90
2694 2819 1.668047 CGGACGTGGAGTTTCTACACC 60.668 57.143 0.00 0.00 41.96 4.16
2695 2820 1.617357 GGACGTGGAGTTTCTACACCT 59.383 52.381 0.00 0.00 41.96 4.00
2696 2821 2.609737 GGACGTGGAGTTTCTACACCTG 60.610 54.545 0.00 0.00 41.96 4.00
2697 2822 2.295349 GACGTGGAGTTTCTACACCTGA 59.705 50.000 0.00 0.00 41.96 3.86
2698 2823 2.296471 ACGTGGAGTTTCTACACCTGAG 59.704 50.000 6.55 0.00 41.96 3.35
2699 2824 2.689646 GTGGAGTTTCTACACCTGAGC 58.310 52.381 1.03 0.00 39.27 4.26
2700 2825 2.300437 GTGGAGTTTCTACACCTGAGCT 59.700 50.000 1.03 0.00 39.27 4.09
2701 2826 2.563179 TGGAGTTTCTACACCTGAGCTC 59.437 50.000 6.82 6.82 36.15 4.09
2702 2827 2.563179 GGAGTTTCTACACCTGAGCTCA 59.437 50.000 17.19 17.19 32.81 4.26
2703 2828 3.196685 GGAGTTTCTACACCTGAGCTCAT 59.803 47.826 18.63 4.63 32.81 2.90
2704 2829 4.402793 GGAGTTTCTACACCTGAGCTCATA 59.597 45.833 18.63 5.70 32.81 2.15
2705 2830 5.069781 GGAGTTTCTACACCTGAGCTCATAT 59.930 44.000 18.63 5.36 32.81 1.78
2706 2831 5.911752 AGTTTCTACACCTGAGCTCATATG 58.088 41.667 18.63 19.73 0.00 1.78
2707 2832 4.327982 TTCTACACCTGAGCTCATATGC 57.672 45.455 18.63 0.00 0.00 3.14
2717 2842 3.613494 AGCTCATATGCTCCTGCTATG 57.387 47.619 0.00 0.00 39.34 2.23
2718 2843 3.171528 AGCTCATATGCTCCTGCTATGA 58.828 45.455 0.00 0.00 39.34 2.15
2719 2844 3.581770 AGCTCATATGCTCCTGCTATGAA 59.418 43.478 0.00 0.00 39.34 2.57
2720 2845 4.225492 AGCTCATATGCTCCTGCTATGAAT 59.775 41.667 0.00 0.00 39.34 2.57
2721 2846 5.424573 AGCTCATATGCTCCTGCTATGAATA 59.575 40.000 0.00 0.00 39.34 1.75
2722 2847 5.754406 GCTCATATGCTCCTGCTATGAATAG 59.246 44.000 0.00 0.00 38.05 1.73
2723 2848 6.629963 GCTCATATGCTCCTGCTATGAATAGT 60.630 42.308 0.00 0.00 38.05 2.12
2724 2849 7.417229 GCTCATATGCTCCTGCTATGAATAGTA 60.417 40.741 0.00 0.00 38.05 1.82
2725 2850 8.366359 TCATATGCTCCTGCTATGAATAGTAA 57.634 34.615 0.00 0.00 36.90 2.24
2726 2851 8.815912 TCATATGCTCCTGCTATGAATAGTAAA 58.184 33.333 0.00 0.00 36.90 2.01
2727 2852 9.440773 CATATGCTCCTGCTATGAATAGTAAAA 57.559 33.333 0.00 0.00 40.48 1.52
2731 2856 9.845740 TGCTCCTGCTATGAATAGTAAAATAAA 57.154 29.630 0.00 0.00 40.48 1.40
2784 2909 9.606631 TTTTTGTGGCATACTTTAAGAAATGTT 57.393 25.926 0.00 0.00 0.00 2.71
2785 2910 9.606631 TTTTGTGGCATACTTTAAGAAATGTTT 57.393 25.926 0.00 0.00 0.00 2.83
2786 2911 8.586570 TTGTGGCATACTTTAAGAAATGTTTG 57.413 30.769 0.00 0.00 0.00 2.93
2787 2912 7.721402 TGTGGCATACTTTAAGAAATGTTTGT 58.279 30.769 0.00 0.00 29.91 2.83
2788 2913 8.200792 TGTGGCATACTTTAAGAAATGTTTGTT 58.799 29.630 0.00 0.00 29.91 2.83
2789 2914 8.487176 GTGGCATACTTTAAGAAATGTTTGTTG 58.513 33.333 0.00 0.00 29.91 3.33
2790 2915 8.200792 TGGCATACTTTAAGAAATGTTTGTTGT 58.799 29.630 0.00 0.00 29.91 3.32
2791 2916 8.487176 GGCATACTTTAAGAAATGTTTGTTGTG 58.513 33.333 0.00 0.00 29.91 3.33
2792 2917 8.003784 GCATACTTTAAGAAATGTTTGTTGTGC 58.996 33.333 0.00 0.00 29.91 4.57
2793 2918 9.029243 CATACTTTAAGAAATGTTTGTTGTGCA 57.971 29.630 0.00 0.00 0.00 4.57
2794 2919 9.762933 ATACTTTAAGAAATGTTTGTTGTGCAT 57.237 25.926 0.00 0.00 0.00 3.96
2795 2920 7.908230 ACTTTAAGAAATGTTTGTTGTGCATG 58.092 30.769 0.00 0.00 0.00 4.06
2796 2921 4.799419 AAGAAATGTTTGTTGTGCATGC 57.201 36.364 11.82 11.82 0.00 4.06
2797 2922 3.794717 AGAAATGTTTGTTGTGCATGCA 58.205 36.364 18.46 18.46 0.00 3.96
2798 2923 4.190001 AGAAATGTTTGTTGTGCATGCAA 58.810 34.783 24.58 10.26 0.00 4.08
2799 2924 4.634883 AGAAATGTTTGTTGTGCATGCAAA 59.365 33.333 24.58 15.92 0.00 3.68
2800 2925 4.959596 AATGTTTGTTGTGCATGCAAAA 57.040 31.818 24.58 21.90 34.47 2.44
2801 2926 5.502153 AATGTTTGTTGTGCATGCAAAAT 57.498 30.435 25.58 6.44 34.47 1.82
2802 2927 4.959596 TGTTTGTTGTGCATGCAAAATT 57.040 31.818 25.58 0.00 34.47 1.82
2803 2928 5.306532 TGTTTGTTGTGCATGCAAAATTT 57.693 30.435 25.58 0.00 34.47 1.82
2804 2929 5.330295 TGTTTGTTGTGCATGCAAAATTTC 58.670 33.333 25.58 13.82 34.47 2.17
2805 2930 3.856104 TGTTGTGCATGCAAAATTTCG 57.144 38.095 25.58 0.00 0.00 3.46
2806 2931 3.193263 TGTTGTGCATGCAAAATTTCGT 58.807 36.364 25.58 0.00 0.00 3.85
2807 2932 3.244814 TGTTGTGCATGCAAAATTTCGTC 59.755 39.130 25.58 12.42 0.00 4.20
2808 2933 3.089573 TGTGCATGCAAAATTTCGTCA 57.910 38.095 24.58 9.97 0.00 4.35
2809 2934 3.651206 TGTGCATGCAAAATTTCGTCAT 58.349 36.364 24.58 0.00 0.00 3.06
2810 2935 3.674281 TGTGCATGCAAAATTTCGTCATC 59.326 39.130 24.58 5.50 0.00 2.92
2811 2936 3.674281 GTGCATGCAAAATTTCGTCATCA 59.326 39.130 24.58 0.00 0.00 3.07
2812 2937 4.150274 GTGCATGCAAAATTTCGTCATCAA 59.850 37.500 24.58 0.00 0.00 2.57
2813 2938 4.748600 TGCATGCAAAATTTCGTCATCAAA 59.251 33.333 20.30 0.00 0.00 2.69
2814 2939 5.408909 TGCATGCAAAATTTCGTCATCAAAT 59.591 32.000 20.30 0.00 0.00 2.32
2815 2940 5.730802 GCATGCAAAATTTCGTCATCAAATG 59.269 36.000 14.21 0.00 0.00 2.32
2816 2941 6.401260 GCATGCAAAATTTCGTCATCAAATGA 60.401 34.615 14.21 0.00 36.84 2.57
2828 2953 5.648178 TCATCAAATGACATTGGTGGAAG 57.352 39.130 0.34 0.00 40.92 3.46
2829 2954 4.463539 TCATCAAATGACATTGGTGGAAGG 59.536 41.667 0.34 0.00 40.92 3.46
2830 2955 2.562298 TCAAATGACATTGGTGGAAGGC 59.438 45.455 0.34 0.00 0.00 4.35
2831 2956 2.299582 CAAATGACATTGGTGGAAGGCA 59.700 45.455 0.34 0.00 0.00 4.75
2832 2957 2.537633 ATGACATTGGTGGAAGGCAT 57.462 45.000 0.00 0.00 0.00 4.40
2833 2958 1.548081 TGACATTGGTGGAAGGCATG 58.452 50.000 0.00 0.00 0.00 4.06
2834 2959 0.819582 GACATTGGTGGAAGGCATGG 59.180 55.000 0.00 0.00 0.00 3.66
2835 2960 0.114954 ACATTGGTGGAAGGCATGGT 59.885 50.000 0.00 0.00 0.00 3.55
2836 2961 1.357420 ACATTGGTGGAAGGCATGGTA 59.643 47.619 0.00 0.00 0.00 3.25
2837 2962 2.225242 ACATTGGTGGAAGGCATGGTAA 60.225 45.455 0.00 0.00 0.00 2.85
2838 2963 2.685106 TTGGTGGAAGGCATGGTAAA 57.315 45.000 0.00 0.00 0.00 2.01
2839 2964 2.685106 TGGTGGAAGGCATGGTAAAA 57.315 45.000 0.00 0.00 0.00 1.52
2840 2965 2.964209 TGGTGGAAGGCATGGTAAAAA 58.036 42.857 0.00 0.00 0.00 1.94
2888 3013 8.364129 TGTTACTTTCAAATGAATTTTGGAGC 57.636 30.769 0.00 0.00 44.07 4.70
2889 3014 8.203485 TGTTACTTTCAAATGAATTTTGGAGCT 58.797 29.630 0.00 0.00 44.07 4.09
2890 3015 8.703336 GTTACTTTCAAATGAATTTTGGAGCTC 58.297 33.333 4.71 4.71 44.07 4.09
2891 3016 7.059202 ACTTTCAAATGAATTTTGGAGCTCT 57.941 32.000 14.64 0.00 44.07 4.09
2892 3017 6.927381 ACTTTCAAATGAATTTTGGAGCTCTG 59.073 34.615 14.64 0.00 44.07 3.35
2893 3018 6.653526 TTCAAATGAATTTTGGAGCTCTGA 57.346 33.333 14.64 1.59 44.07 3.27
2894 3019 6.845758 TCAAATGAATTTTGGAGCTCTGAT 57.154 33.333 14.64 0.00 44.07 2.90
2895 3020 7.235935 TCAAATGAATTTTGGAGCTCTGATT 57.764 32.000 14.64 8.64 44.07 2.57
2896 3021 7.673180 TCAAATGAATTTTGGAGCTCTGATTT 58.327 30.769 14.64 1.92 44.07 2.17
2897 3022 8.152246 TCAAATGAATTTTGGAGCTCTGATTTT 58.848 29.630 14.64 2.66 44.07 1.82
2898 3023 8.780249 CAAATGAATTTTGGAGCTCTGATTTTT 58.220 29.630 14.64 1.02 40.90 1.94
2917 3042 4.988744 TTTTTGCCACGACCTCCA 57.011 50.000 0.00 0.00 0.00 3.86
2918 3043 2.410466 TTTTTGCCACGACCTCCAC 58.590 52.632 0.00 0.00 0.00 4.02
2919 3044 1.104577 TTTTTGCCACGACCTCCACC 61.105 55.000 0.00 0.00 0.00 4.61
2920 3045 2.272230 TTTTGCCACGACCTCCACCA 62.272 55.000 0.00 0.00 0.00 4.17
2921 3046 2.272230 TTTGCCACGACCTCCACCAA 62.272 55.000 0.00 0.00 0.00 3.67
2922 3047 2.063015 TTGCCACGACCTCCACCAAT 62.063 55.000 0.00 0.00 0.00 3.16
2923 3048 2.040544 GCCACGACCTCCACCAATG 61.041 63.158 0.00 0.00 0.00 2.82
2924 3049 1.374947 CCACGACCTCCACCAATGT 59.625 57.895 0.00 0.00 0.00 2.71
2925 3050 0.955428 CCACGACCTCCACCAATGTG 60.955 60.000 0.00 0.00 42.39 3.21
2926 3051 0.034756 CACGACCTCCACCAATGTGA 59.965 55.000 0.00 0.00 45.76 3.58
2927 3052 0.984230 ACGACCTCCACCAATGTGAT 59.016 50.000 0.00 0.00 45.76 3.06
2928 3053 1.351017 ACGACCTCCACCAATGTGATT 59.649 47.619 0.00 0.00 45.76 2.57
2929 3054 2.224769 ACGACCTCCACCAATGTGATTT 60.225 45.455 0.00 0.00 45.76 2.17
2930 3055 2.420022 CGACCTCCACCAATGTGATTTC 59.580 50.000 0.00 0.00 45.76 2.17
2931 3056 2.420022 GACCTCCACCAATGTGATTTCG 59.580 50.000 0.00 0.00 45.76 3.46
2932 3057 2.224769 ACCTCCACCAATGTGATTTCGT 60.225 45.455 0.00 0.00 45.76 3.85
2933 3058 2.162208 CCTCCACCAATGTGATTTCGTG 59.838 50.000 0.00 0.00 45.76 4.35
2934 3059 3.073678 CTCCACCAATGTGATTTCGTGA 58.926 45.455 0.00 0.00 45.76 4.35
2935 3060 3.684908 TCCACCAATGTGATTTCGTGAT 58.315 40.909 0.00 0.00 45.76 3.06
2936 3061 3.439825 TCCACCAATGTGATTTCGTGATG 59.560 43.478 0.00 0.00 45.76 3.07
2937 3062 3.439825 CCACCAATGTGATTTCGTGATGA 59.560 43.478 0.00 0.00 45.76 2.92
2938 3063 4.082841 CCACCAATGTGATTTCGTGATGAA 60.083 41.667 0.00 0.00 45.76 2.57
2939 3064 5.459768 CACCAATGTGATTTCGTGATGAAA 58.540 37.500 1.88 1.88 45.76 2.69
2949 3074 4.907188 TTCGTGATGAAATTTTGCATGC 57.093 36.364 11.82 11.82 32.37 4.06
2950 3075 3.910648 TCGTGATGAAATTTTGCATGCA 58.089 36.364 18.46 18.46 0.00 3.96
2951 3076 3.674281 TCGTGATGAAATTTTGCATGCAC 59.326 39.130 22.58 8.45 0.00 4.57
2952 3077 3.429207 CGTGATGAAATTTTGCATGCACA 59.571 39.130 22.58 12.14 0.00 4.57
2953 3078 4.084485 CGTGATGAAATTTTGCATGCACAA 60.084 37.500 22.58 21.53 0.00 3.33
2954 3079 5.379003 GTGATGAAATTTTGCATGCACAAG 58.621 37.500 22.58 0.00 0.00 3.16
2955 3080 5.177881 GTGATGAAATTTTGCATGCACAAGA 59.822 36.000 22.58 1.91 0.00 3.02
2956 3081 5.758784 TGATGAAATTTTGCATGCACAAGAA 59.241 32.000 22.58 9.42 0.00 2.52
2957 3082 6.260271 TGATGAAATTTTGCATGCACAAGAAA 59.740 30.769 22.58 18.36 0.00 2.52
2958 3083 5.808403 TGAAATTTTGCATGCACAAGAAAC 58.192 33.333 22.58 13.10 0.00 2.78
2959 3084 5.353400 TGAAATTTTGCATGCACAAGAAACA 59.647 32.000 22.58 15.34 0.00 2.83
2960 3085 6.038382 TGAAATTTTGCATGCACAAGAAACAT 59.962 30.769 22.58 10.34 0.00 2.71
2961 3086 6.380095 AATTTTGCATGCACAAGAAACATT 57.620 29.167 22.58 7.45 0.00 2.71
2962 3087 5.814764 TTTTGCATGCACAAGAAACATTT 57.185 30.435 22.58 0.00 0.00 2.32
2963 3088 5.814764 TTTGCATGCACAAGAAACATTTT 57.185 30.435 22.58 0.00 0.00 1.82
2964 3089 5.814764 TTGCATGCACAAGAAACATTTTT 57.185 30.435 22.58 0.00 0.00 1.94
3030 3155 7.553881 TTATTTTACTGTTCATAGCAGGAGC 57.446 36.000 0.00 0.00 38.22 4.70
3031 3156 4.551702 TTTACTGTTCATAGCAGGAGCA 57.448 40.909 0.00 0.00 45.49 4.26
3032 3157 4.760530 TTACTGTTCATAGCAGGAGCAT 57.239 40.909 0.00 0.00 45.49 3.79
3033 3158 5.869649 TTACTGTTCATAGCAGGAGCATA 57.130 39.130 0.00 0.00 45.49 3.14
3034 3159 4.970860 ACTGTTCATAGCAGGAGCATAT 57.029 40.909 0.00 0.00 45.49 1.78
3035 3160 4.639334 ACTGTTCATAGCAGGAGCATATG 58.361 43.478 0.00 0.00 45.49 1.78
3036 3161 4.346127 ACTGTTCATAGCAGGAGCATATGA 59.654 41.667 6.97 0.00 45.49 2.15
3037 3162 4.891260 TGTTCATAGCAGGAGCATATGAG 58.109 43.478 6.97 0.00 45.49 2.90
3038 3163 3.606595 TCATAGCAGGAGCATATGAGC 57.393 47.619 6.97 1.86 45.49 4.26
3049 3174 3.570540 AGCATATGAGCTCAGGTGTAGA 58.429 45.455 22.96 1.51 42.18 2.59
3050 3175 3.963374 AGCATATGAGCTCAGGTGTAGAA 59.037 43.478 22.96 0.00 42.18 2.10
3051 3176 4.406972 AGCATATGAGCTCAGGTGTAGAAA 59.593 41.667 22.96 0.00 42.18 2.52
3052 3177 4.749099 GCATATGAGCTCAGGTGTAGAAAG 59.251 45.833 22.96 3.99 0.00 2.62
3053 3178 2.751166 TGAGCTCAGGTGTAGAAAGC 57.249 50.000 13.74 0.00 0.00 3.51
3054 3179 2.251818 TGAGCTCAGGTGTAGAAAGCT 58.748 47.619 13.74 0.00 45.54 3.74
3055 3180 3.431415 TGAGCTCAGGTGTAGAAAGCTA 58.569 45.455 13.74 0.00 43.06 3.32
3056 3181 3.193691 TGAGCTCAGGTGTAGAAAGCTAC 59.806 47.826 13.74 0.00 43.06 3.58
3057 3182 3.436243 AGCTCAGGTGTAGAAAGCTACT 58.564 45.455 0.00 0.00 45.79 2.57
3058 3183 3.835395 AGCTCAGGTGTAGAAAGCTACTT 59.165 43.478 0.00 0.00 45.79 2.24
3059 3184 4.284746 AGCTCAGGTGTAGAAAGCTACTTT 59.715 41.667 0.00 0.00 45.79 2.66
3070 3195 5.629348 GAAAGCTACTTTCGATCTAGCAC 57.371 43.478 15.19 6.19 40.02 4.40
3071 3196 3.719173 AGCTACTTTCGATCTAGCACC 57.281 47.619 15.19 0.00 36.18 5.01
3072 3197 2.033550 AGCTACTTTCGATCTAGCACCG 59.966 50.000 15.19 0.00 36.18 4.94
3073 3198 2.033049 GCTACTTTCGATCTAGCACCGA 59.967 50.000 10.22 0.00 34.24 4.69
3082 3207 3.004419 CGATCTAGCACCGAGTATTTCCA 59.996 47.826 0.00 0.00 0.00 3.53
3161 3352 2.981977 GATTTGGCGGGCATGCATGG 62.982 60.000 27.34 12.53 36.28 3.66
3293 3484 2.432628 CGCGTCCTCCACCAAGTC 60.433 66.667 0.00 0.00 0.00 3.01
3327 3518 2.223923 CGGCTACTTCATCTCCCTCTTG 60.224 54.545 0.00 0.00 0.00 3.02
3423 3614 3.127533 GCCATCGCAAGGTTCGCT 61.128 61.111 0.00 0.00 38.47 4.93
3427 3618 3.682292 ATCGCAAGGTTCGCTCCCC 62.682 63.158 0.00 0.00 38.47 4.81
3428 3619 4.394712 CGCAAGGTTCGCTCCCCT 62.395 66.667 0.00 0.00 0.00 4.79
3429 3620 2.436824 GCAAGGTTCGCTCCCCTC 60.437 66.667 0.00 0.00 0.00 4.30
3430 3621 2.269241 CAAGGTTCGCTCCCCTCC 59.731 66.667 0.00 0.00 0.00 4.30
3431 3622 3.009714 AAGGTTCGCTCCCCTCCC 61.010 66.667 0.00 0.00 0.00 4.30
3434 3625 3.471806 GTTCGCTCCCCTCCCCTC 61.472 72.222 0.00 0.00 0.00 4.30
3460 3651 7.091533 TCCCTTCCTTTCTTTTTCTCACTAT 57.908 36.000 0.00 0.00 0.00 2.12
3463 3659 8.951243 CCCTTCCTTTCTTTTTCTCACTATAAG 58.049 37.037 0.00 0.00 0.00 1.73
3484 3680 0.890542 ACGTAGACGGTACCAGTGCA 60.891 55.000 13.54 0.00 44.95 4.57
3485 3681 0.179171 CGTAGACGGTACCAGTGCAG 60.179 60.000 13.54 0.00 35.37 4.41
3490 3783 1.203994 GACGGTACCAGTGCAGTACAT 59.796 52.381 13.54 4.40 41.55 2.29
3509 3802 3.117888 ACATGACTTTGACTGGTTCCACT 60.118 43.478 0.00 0.00 0.00 4.00
3583 3876 2.496070 TCCATACTGAAACCTCTGACCG 59.504 50.000 0.00 0.00 0.00 4.79
3640 3933 6.611642 ACTGTATTAATCTAGTGCCAGGAAGA 59.388 38.462 0.00 0.00 0.00 2.87
3648 3941 0.811616 GTGCCAGGAAGATGCTACGG 60.812 60.000 0.00 0.00 0.00 4.02
3652 3945 1.471676 CCAGGAAGATGCTACGGTGTC 60.472 57.143 0.00 0.00 0.00 3.67
3687 3980 1.281656 GCCCGTCTTTGTTGAACGG 59.718 57.895 6.20 6.20 42.91 4.44
3688 3981 1.441732 GCCCGTCTTTGTTGAACGGT 61.442 55.000 11.69 0.00 41.84 4.83
3689 3982 1.868469 CCCGTCTTTGTTGAACGGTA 58.132 50.000 11.69 0.00 41.84 4.02
3690 3983 1.528161 CCCGTCTTTGTTGAACGGTAC 59.472 52.381 11.69 0.00 41.84 3.34
3691 3984 2.203401 CCGTCTTTGTTGAACGGTACA 58.797 47.619 5.06 0.00 38.94 2.90
3692 3985 2.608546 CCGTCTTTGTTGAACGGTACAA 59.391 45.455 5.06 0.00 38.94 2.41
3693 3986 3.302870 CCGTCTTTGTTGAACGGTACAAG 60.303 47.826 5.06 0.00 38.94 3.16
3770 4063 4.114997 CATGCCGCCGGTTTGGTC 62.115 66.667 4.45 0.51 41.21 4.02
3778 4075 0.463833 GCCGGTTTGGTCCTATCAGG 60.464 60.000 1.90 0.00 41.21 3.86
4078 4418 4.069232 TCCAGGTCCAAGCTCGCG 62.069 66.667 0.00 0.00 0.00 5.87
4169 4509 2.621055 CTCGTCTCATCCAAGGAGGTAG 59.379 54.545 0.25 0.00 39.02 3.18
4170 4510 1.683917 CGTCTCATCCAAGGAGGTAGG 59.316 57.143 0.25 0.00 39.02 3.18
4172 4512 2.432510 GTCTCATCCAAGGAGGTAGGTG 59.567 54.545 0.25 0.00 39.02 4.00
4175 4515 3.713764 CTCATCCAAGGAGGTAGGTGATT 59.286 47.826 0.25 0.00 39.02 2.57
4176 4516 3.455910 TCATCCAAGGAGGTAGGTGATTG 59.544 47.826 0.25 0.00 39.02 2.67
4177 4517 3.199442 TCCAAGGAGGTAGGTGATTGA 57.801 47.619 0.00 0.00 39.02 2.57
4189 4533 6.157994 AGGTAGGTGATTGATTAACTGGCTAA 59.842 38.462 0.00 0.00 0.00 3.09
4190 4534 6.998673 GGTAGGTGATTGATTAACTGGCTAAT 59.001 38.462 0.00 0.00 0.00 1.73
4197 4541 8.264347 TGATTGATTAACTGGCTAATACTGTCA 58.736 33.333 0.00 0.00 0.00 3.58
4206 4550 7.268586 ACTGGCTAATACTGTCATTTAGTGAG 58.731 38.462 0.00 0.00 37.56 3.51
4207 4551 7.093289 ACTGGCTAATACTGTCATTTAGTGAGT 60.093 37.037 0.00 0.00 37.56 3.41
4232 4576 7.380602 GTGATTAACACTACGATATGGTGGTAC 59.619 40.741 6.55 0.00 41.31 3.34
4399 4757 2.765807 ATCACCTCCCTGCTCCGG 60.766 66.667 0.00 0.00 0.00 5.14
4466 4824 0.174389 CAGATGTGAGCGCACCTACT 59.826 55.000 18.33 11.13 44.51 2.57
4467 4825 1.405463 CAGATGTGAGCGCACCTACTA 59.595 52.381 18.33 0.00 44.51 1.82
4470 4828 3.253677 AGATGTGAGCGCACCTACTATAC 59.746 47.826 18.33 0.00 44.51 1.47
4471 4829 2.371306 TGTGAGCGCACCTACTATACA 58.629 47.619 18.33 0.00 44.51 2.29
4473 4831 3.004419 TGTGAGCGCACCTACTATACATC 59.996 47.826 18.33 0.00 44.51 3.06
4474 4832 3.253677 GTGAGCGCACCTACTATACATCT 59.746 47.826 11.47 0.00 39.14 2.90
4475 4833 4.454847 GTGAGCGCACCTACTATACATCTA 59.545 45.833 11.47 0.00 39.14 1.98
4476 4834 4.454847 TGAGCGCACCTACTATACATCTAC 59.545 45.833 11.47 0.00 0.00 2.59
4477 4835 4.395625 AGCGCACCTACTATACATCTACA 58.604 43.478 11.47 0.00 0.00 2.74
4478 4836 5.010933 AGCGCACCTACTATACATCTACAT 58.989 41.667 11.47 0.00 0.00 2.29
4479 4837 5.096169 GCGCACCTACTATACATCTACATG 58.904 45.833 0.30 0.00 35.92 3.21
4510 4868 2.534298 CATGTCGATGTCACACTCCTC 58.466 52.381 0.00 0.00 0.00 3.71
4522 4880 2.497675 CACACTCCTCTGCTTAGCCTAA 59.502 50.000 0.29 0.00 0.00 2.69
4536 4894 0.378610 GCCTAATTGAAGCCAGCGTC 59.621 55.000 0.00 0.00 0.00 5.19
4556 4914 4.189231 GTCCAATAGTGCACCGTAGAAAT 58.811 43.478 14.63 0.00 0.00 2.17
4844 5258 6.071952 GCCAGGTATTTTCAATCAGAGACAAA 60.072 38.462 0.00 0.00 0.00 2.83
4877 5291 9.959749 TTGTTTGATGATTGATACATGATCATG 57.040 29.630 29.95 29.95 44.23 3.07
4979 5414 7.012989 GGCAAGAAGAACAACCGGTATATAATT 59.987 37.037 8.00 0.00 0.00 1.40
4983 5418 9.269453 AGAAGAACAACCGGTATATAATTAAGC 57.731 33.333 8.00 0.00 0.00 3.09
4984 5419 7.974482 AGAACAACCGGTATATAATTAAGCC 57.026 36.000 8.00 0.00 0.00 4.35
4988 5423 4.840271 ACCGGTATATAATTAAGCCTGCC 58.160 43.478 4.49 0.00 0.00 4.85
4990 5425 5.722923 ACCGGTATATAATTAAGCCTGCCTA 59.277 40.000 4.49 0.00 0.00 3.93
5008 5443 2.159226 CCTACTCGTGACATTCTCCCAC 60.159 54.545 0.00 0.00 0.00 4.61
5031 5473 2.316361 TTTGGTGCAACGCGTGACTG 62.316 55.000 14.98 9.15 38.12 3.51
5047 5491 4.122776 GTGACTGACAGTGACAACTTCAT 58.877 43.478 18.85 0.00 36.32 2.57
5260 5707 2.032681 GTGGCACCACTCCCACTC 59.967 66.667 12.66 0.00 46.23 3.51
5261 5708 3.249189 TGGCACCACTCCCACTCC 61.249 66.667 0.00 0.00 0.00 3.85
5776 6229 6.205853 CAGTAACAGAGTCTGTACAGTTCTCT 59.794 42.308 29.21 29.21 44.62 3.10
5777 6230 6.773685 AGTAACAGAGTCTGTACAGTTCTCTT 59.226 38.462 30.78 24.15 44.62 2.85
5778 6231 5.699097 ACAGAGTCTGTACAGTTCTCTTC 57.301 43.478 30.78 18.58 43.46 2.87
5779 6232 5.381757 ACAGAGTCTGTACAGTTCTCTTCT 58.618 41.667 30.78 22.45 43.46 2.85
5780 6233 5.472137 ACAGAGTCTGTACAGTTCTCTTCTC 59.528 44.000 30.78 21.96 43.46 2.87
5817 6270 6.428771 TGCTAACTGAACCCTGTAATTAACAC 59.571 38.462 0.00 0.00 33.45 3.32
5835 6293 2.759114 CAAGGCCCCTGCTTCTCA 59.241 61.111 0.00 0.00 37.74 3.27
5860 6318 6.371825 ACGTTTCTCATTTCTACCATCCTTTC 59.628 38.462 0.00 0.00 0.00 2.62
5917 6379 4.252902 CGCAACGAGTGTAAATTCATACG 58.747 43.478 0.00 0.00 0.00 3.06
5937 6403 5.126396 ACGTACTGTAAAACCAGAGGTAC 57.874 43.478 0.00 0.00 33.12 3.34
6025 6491 9.143631 GGTCTTCCATACATTTCAAATTTTCAG 57.856 33.333 0.00 0.00 0.00 3.02
6056 6524 6.204359 CACAGGATTAATAAGAACATGCAGC 58.796 40.000 0.00 0.00 0.00 5.25
6365 7020 4.580580 ACAAAGTTCTTCTTCCGCTTGATT 59.419 37.500 0.00 0.00 35.02 2.57
6366 7021 5.067805 ACAAAGTTCTTCTTCCGCTTGATTT 59.932 36.000 0.00 0.00 35.02 2.17
6582 7237 1.000274 GCAAAGATTTCACCGCCAGTT 60.000 47.619 0.00 0.00 0.00 3.16
6659 7314 5.512060 GCATCCACTTATTATCTCAGCCTCA 60.512 44.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 5.851047 AATGACCTTAACGAGTTAAACGG 57.149 39.130 9.36 10.04 34.95 4.44
310 311 6.399354 CCGAGCTAACAAGTTACTCGTTTAAC 60.399 42.308 25.12 1.99 40.60 2.01
384 385 1.066152 CTCATGATTCGGCTCGACTCA 59.934 52.381 15.90 15.90 46.14 3.41
518 547 6.548321 AGTGTATTTTGGGGAGTTCATTACA 58.452 36.000 0.00 0.00 0.00 2.41
532 561 6.089551 CGACAGAGAGTGGTAAGTGTATTTTG 59.910 42.308 0.00 0.00 0.00 2.44
543 572 2.581216 AAGGTCGACAGAGAGTGGTA 57.419 50.000 18.91 0.00 0.00 3.25
551 598 3.162666 AGATGTGGTAAAGGTCGACAGA 58.837 45.455 18.91 0.00 0.00 3.41
553 600 3.322541 TCAAGATGTGGTAAAGGTCGACA 59.677 43.478 18.91 0.00 0.00 4.35
557 604 4.652822 AGGTTCAAGATGTGGTAAAGGTC 58.347 43.478 0.00 0.00 0.00 3.85
567 614 3.230976 GGGGTTTCAAGGTTCAAGATGT 58.769 45.455 0.00 0.00 0.00 3.06
569 616 3.611025 TGGGGTTTCAAGGTTCAAGAT 57.389 42.857 0.00 0.00 0.00 2.40
570 617 3.028130 GTTGGGGTTTCAAGGTTCAAGA 58.972 45.455 0.00 0.00 0.00 3.02
607 654 0.176680 ATCGCAGTGCTAGTTGGGAG 59.823 55.000 14.33 0.00 39.23 4.30
609 656 1.091771 CCATCGCAGTGCTAGTTGGG 61.092 60.000 14.33 2.30 0.00 4.12
642 690 7.122055 GTGTATGTGGAAAGGGAAATGTAATGA 59.878 37.037 0.00 0.00 0.00 2.57
892 973 2.399356 GCTAGGCGGCAAGTTGACC 61.399 63.158 13.08 6.65 0.00 4.02
893 974 0.108329 TAGCTAGGCGGCAAGTTGAC 60.108 55.000 13.08 1.74 34.17 3.18
977 1062 4.131088 GGTCGGTCGGCAGGTCTC 62.131 72.222 0.00 0.00 0.00 3.36
1264 1350 4.023279 TGCAGAACGAATGCTTGTGTTATT 60.023 37.500 11.33 0.00 44.17 1.40
1265 1351 3.501828 TGCAGAACGAATGCTTGTGTTAT 59.498 39.130 11.33 0.00 44.17 1.89
1271 1357 2.905959 TCATGCAGAACGAATGCTTG 57.094 45.000 15.53 15.53 45.33 4.01
1283 1369 4.093850 TGATCGAAAACTGTGATCATGCAG 59.906 41.667 10.88 10.88 42.50 4.41
1307 1393 2.029380 TCAAACAGAAGAAGCGATCGGA 60.029 45.455 18.30 0.00 0.00 4.55
1336 1422 2.916716 CAAATCTTGCGAAACGGGATTG 59.083 45.455 0.00 0.00 0.00 2.67
1454 1554 1.745653 GCTTAACTGCAGAATCCCACC 59.254 52.381 23.35 0.00 0.00 4.61
1459 1559 4.753233 TCAGAGAGCTTAACTGCAGAATC 58.247 43.478 23.35 8.42 34.99 2.52
1460 1560 4.815533 TCAGAGAGCTTAACTGCAGAAT 57.184 40.909 23.35 11.42 34.99 2.40
1461 1561 4.607293 TTCAGAGAGCTTAACTGCAGAA 57.393 40.909 23.35 3.90 34.99 3.02
1463 1563 4.314121 AGTTTCAGAGAGCTTAACTGCAG 58.686 43.478 13.48 13.48 34.99 4.41
1464 1564 4.342862 AGTTTCAGAGAGCTTAACTGCA 57.657 40.909 9.74 0.00 34.99 4.41
1465 1565 5.447573 CAAAGTTTCAGAGAGCTTAACTGC 58.552 41.667 9.74 0.00 30.80 4.40
1466 1566 5.561725 GCCAAAGTTTCAGAGAGCTTAACTG 60.562 44.000 8.70 8.70 30.80 3.16
1467 1567 4.517075 GCCAAAGTTTCAGAGAGCTTAACT 59.483 41.667 0.00 0.00 31.32 2.24
1468 1568 4.320567 GGCCAAAGTTTCAGAGAGCTTAAC 60.321 45.833 0.00 0.00 0.00 2.01
1469 1569 3.821033 GGCCAAAGTTTCAGAGAGCTTAA 59.179 43.478 0.00 0.00 0.00 1.85
1474 1574 4.861102 ATTTGGCCAAAGTTTCAGAGAG 57.139 40.909 32.85 0.00 33.32 3.20
1504 1604 3.938334 TGCGCTTAATCTTATCAGCAACA 59.062 39.130 9.73 0.00 32.17 3.33
1575 1675 5.712917 AGAAGGACAAACGGCCAAAAATATA 59.287 36.000 2.24 0.00 0.00 0.86
1576 1676 4.526650 AGAAGGACAAACGGCCAAAAATAT 59.473 37.500 2.24 0.00 0.00 1.28
1604 1706 1.981495 AGTCCCAGAGAACTTTCCCAG 59.019 52.381 0.00 0.00 0.00 4.45
1634 1737 9.638239 TCAATTTCTGTAATGCAAAAATCTACC 57.362 29.630 0.00 0.00 0.00 3.18
1650 1756 4.318332 TCACGATGCTTCTCAATTTCTGT 58.682 39.130 0.00 0.00 0.00 3.41
1654 1760 3.076621 TGCTCACGATGCTTCTCAATTT 58.923 40.909 0.00 0.00 0.00 1.82
1657 1763 2.168326 TTGCTCACGATGCTTCTCAA 57.832 45.000 0.00 0.00 0.00 3.02
1688 1795 2.450609 TAATCCGGCGGCTAATTCTC 57.549 50.000 23.83 0.00 0.00 2.87
1705 1812 9.643693 CCTACTCGGACAAACTAAACTAATTAA 57.356 33.333 0.00 0.00 33.16 1.40
1706 1813 8.253113 CCCTACTCGGACAAACTAAACTAATTA 58.747 37.037 0.00 0.00 33.16 1.40
1707 1814 7.038799 TCCCTACTCGGACAAACTAAACTAATT 60.039 37.037 0.00 0.00 33.16 1.40
1712 1819 4.525912 TCCCTACTCGGACAAACTAAAC 57.474 45.455 0.00 0.00 33.16 2.01
1713 1820 5.544650 CTTTCCCTACTCGGACAAACTAAA 58.455 41.667 0.00 0.00 33.16 1.85
1720 1827 1.001633 GTTGCTTTCCCTACTCGGACA 59.998 52.381 0.00 0.00 33.16 4.02
1724 1831 0.669318 TGCGTTGCTTTCCCTACTCG 60.669 55.000 0.00 0.00 0.00 4.18
1728 1835 2.038033 ACTACTTGCGTTGCTTTCCCTA 59.962 45.455 0.00 0.00 0.00 3.53
1748 1855 2.997986 CCATTCACACCAACCGTACTAC 59.002 50.000 0.00 0.00 0.00 2.73
1839 1947 6.015434 ACCCCCAAAATCGATATTTAATGAGC 60.015 38.462 0.00 0.00 34.12 4.26
1882 1990 5.934800 GAGAATCACGTAGGACCGCATCC 62.935 56.522 0.00 0.00 41.32 3.51
1883 1991 1.067212 AGAATCACGTAGGACCGCATC 59.933 52.381 0.00 0.00 0.00 3.91
1908 2016 1.009829 GGTCGATGATTGGTGCAGTC 58.990 55.000 0.00 0.00 0.00 3.51
2014 2124 7.558444 ACATTTTGCTTATACTCCCGGAAAATA 59.442 33.333 0.73 0.00 35.96 1.40
2036 2146 2.299867 GCAGGGAAACATGGACAACATT 59.700 45.455 0.00 0.00 43.79 2.71
2039 2149 1.327303 TGCAGGGAAACATGGACAAC 58.673 50.000 0.00 0.00 43.79 3.32
2046 2156 0.606401 CCGACAGTGCAGGGAAACAT 60.606 55.000 0.00 0.00 0.00 2.71
2079 2189 4.014569 TGATTTTGATCCAGTGGAACGA 57.985 40.909 17.71 10.98 45.86 3.85
2238 2359 3.811083 TCGAGGTGGTGTTTGTTTATGT 58.189 40.909 0.00 0.00 0.00 2.29
2251 2372 1.516386 CCGTCACGATTCGAGGTGG 60.516 63.158 13.95 6.79 34.93 4.61
2302 2424 6.090358 CGGTTTTGATGTACGTCTTACAGATT 59.910 38.462 15.91 0.00 44.14 2.40
2306 2428 3.989167 CCGGTTTTGATGTACGTCTTACA 59.011 43.478 15.91 0.00 45.03 2.41
2364 2489 6.632909 TCCTTCGGAAATACTAACATCGAAA 58.367 36.000 0.00 0.00 35.30 3.46
2387 2512 1.041437 AGCCGGCTATTACAGTCCTC 58.959 55.000 31.86 0.00 0.00 3.71
2393 2518 3.068448 TCGAATGTTAGCCGGCTATTACA 59.932 43.478 32.57 32.57 0.00 2.41
2395 2520 4.242475 CATCGAATGTTAGCCGGCTATTA 58.758 43.478 35.60 26.33 0.00 0.98
2410 2535 2.577606 TGTCACCCCAAACATCGAAT 57.422 45.000 0.00 0.00 0.00 3.34
2415 2540 1.000731 CGCAAATGTCACCCCAAACAT 59.999 47.619 0.00 0.00 37.71 2.71
2433 2558 6.603095 AGAAACTGTCTGTGAAAATATTCGC 58.397 36.000 0.00 0.00 44.55 4.70
2438 2563 8.908786 ATCTGAAGAAACTGTCTGTGAAAATA 57.091 30.769 0.00 0.00 36.40 1.40
2439 2564 7.814264 ATCTGAAGAAACTGTCTGTGAAAAT 57.186 32.000 0.00 0.00 36.40 1.82
2444 2569 5.525012 TGTGAATCTGAAGAAACTGTCTGTG 59.475 40.000 0.00 0.00 36.40 3.66
2445 2570 5.674525 TGTGAATCTGAAGAAACTGTCTGT 58.325 37.500 0.00 0.00 36.40 3.41
2447 2572 6.426328 GTCATGTGAATCTGAAGAAACTGTCT 59.574 38.462 0.00 0.00 38.69 3.41
2448 2573 6.203530 TGTCATGTGAATCTGAAGAAACTGTC 59.796 38.462 0.00 0.00 0.00 3.51
2488 2613 8.325046 GCCTCCCTCTAAAGAAACATATCATAT 58.675 37.037 0.00 0.00 0.00 1.78
2489 2614 7.292356 TGCCTCCCTCTAAAGAAACATATCATA 59.708 37.037 0.00 0.00 0.00 2.15
2490 2615 6.101734 TGCCTCCCTCTAAAGAAACATATCAT 59.898 38.462 0.00 0.00 0.00 2.45
2491 2616 5.428457 TGCCTCCCTCTAAAGAAACATATCA 59.572 40.000 0.00 0.00 0.00 2.15
2492 2617 5.930135 TGCCTCCCTCTAAAGAAACATATC 58.070 41.667 0.00 0.00 0.00 1.63
2493 2618 5.975988 TGCCTCCCTCTAAAGAAACATAT 57.024 39.130 0.00 0.00 0.00 1.78
2494 2619 5.975988 ATGCCTCCCTCTAAAGAAACATA 57.024 39.130 0.00 0.00 0.00 2.29
2495 2620 4.870021 ATGCCTCCCTCTAAAGAAACAT 57.130 40.909 0.00 0.00 0.00 2.71
2496 2621 4.657814 AATGCCTCCCTCTAAAGAAACA 57.342 40.909 0.00 0.00 0.00 2.83
2497 2622 5.984695 AAAATGCCTCCCTCTAAAGAAAC 57.015 39.130 0.00 0.00 0.00 2.78
2498 2623 5.480422 GGAAAAATGCCTCCCTCTAAAGAAA 59.520 40.000 0.00 0.00 0.00 2.52
2499 2624 5.016831 GGAAAAATGCCTCCCTCTAAAGAA 58.983 41.667 0.00 0.00 0.00 2.52
2500 2625 4.292306 AGGAAAAATGCCTCCCTCTAAAGA 59.708 41.667 0.00 0.00 31.50 2.52
2501 2626 4.604156 AGGAAAAATGCCTCCCTCTAAAG 58.396 43.478 0.00 0.00 31.50 1.85
2502 2627 4.600062 GAGGAAAAATGCCTCCCTCTAAA 58.400 43.478 0.00 0.00 44.96 1.85
2503 2628 4.236527 GAGGAAAAATGCCTCCCTCTAA 57.763 45.455 0.00 0.00 44.96 2.10
2504 2629 3.933861 GAGGAAAAATGCCTCCCTCTA 57.066 47.619 0.00 0.00 44.96 2.43
2505 2630 2.816777 GAGGAAAAATGCCTCCCTCT 57.183 50.000 0.00 0.00 44.96 3.69
2520 2645 6.900186 AGAAGAAATATGACTTCCTCTGAGGA 59.100 38.462 22.30 22.30 44.10 3.71
2521 2646 7.123355 AGAAGAAATATGACTTCCTCTGAGG 57.877 40.000 17.84 17.84 42.09 3.86
2547 2672 4.084537 CGCGAGATCAAACAGTAACAGTTT 60.085 41.667 0.00 0.00 39.61 2.66
2554 2679 1.336424 TGTGCGCGAGATCAAACAGTA 60.336 47.619 12.10 0.00 0.00 2.74
2561 2686 0.320334 TTTTCCTGTGCGCGAGATCA 60.320 50.000 12.10 0.00 0.00 2.92
2571 2696 0.238289 AGCGAACGCATTTTCCTGTG 59.762 50.000 20.66 0.00 44.88 3.66
2601 2726 2.677765 CTAGCGAGCGGTCCCTAGGA 62.678 65.000 22.78 0.08 0.00 2.94
2602 2727 2.203308 TAGCGAGCGGTCCCTAGG 60.203 66.667 9.39 0.06 0.00 3.02
2603 2728 1.102222 AACTAGCGAGCGGTCCCTAG 61.102 60.000 26.74 26.74 34.80 3.02
2604 2729 0.181114 TAACTAGCGAGCGGTCCCTA 59.819 55.000 9.39 8.94 0.00 3.53
2605 2730 1.077212 TAACTAGCGAGCGGTCCCT 60.077 57.895 9.39 8.13 0.00 4.20
2606 2731 1.359475 CTAACTAGCGAGCGGTCCC 59.641 63.158 9.39 0.00 0.00 4.46
2609 2734 1.939255 GAGTACTAACTAGCGAGCGGT 59.061 52.381 0.00 0.00 35.56 5.68
2610 2735 1.263752 GGAGTACTAACTAGCGAGCGG 59.736 57.143 0.00 0.00 35.56 5.52
2613 2738 3.810941 CAGAGGGAGTACTAACTAGCGAG 59.189 52.174 0.00 0.00 35.56 5.03
2631 2756 8.318649 TTGAGCGACAACTAATATGGAACAGAG 61.319 40.741 0.00 0.00 35.89 3.35
2632 2757 6.573485 TTGAGCGACAACTAATATGGAACAGA 60.573 38.462 0.00 0.00 35.89 3.41
2633 2758 5.580691 TTGAGCGACAACTAATATGGAACAG 59.419 40.000 0.00 0.00 35.89 3.16
2634 2759 5.483811 TTGAGCGACAACTAATATGGAACA 58.516 37.500 0.00 0.00 36.63 3.18
2635 2760 6.248631 GTTTGAGCGACAACTAATATGGAAC 58.751 40.000 0.00 0.00 38.29 3.62
2636 2761 5.062934 CGTTTGAGCGACAACTAATATGGAA 59.937 40.000 0.00 0.00 38.29 3.53
2637 2762 4.565166 CGTTTGAGCGACAACTAATATGGA 59.435 41.667 0.00 0.00 38.29 3.41
2638 2763 4.260212 CCGTTTGAGCGACAACTAATATGG 60.260 45.833 0.00 0.00 38.29 2.74
2639 2764 4.565166 TCCGTTTGAGCGACAACTAATATG 59.435 41.667 0.00 0.00 38.29 1.78
2640 2765 4.751060 TCCGTTTGAGCGACAACTAATAT 58.249 39.130 0.00 0.00 38.29 1.28
2641 2766 4.177165 TCCGTTTGAGCGACAACTAATA 57.823 40.909 0.00 0.00 38.29 0.98
2642 2767 3.034721 TCCGTTTGAGCGACAACTAAT 57.965 42.857 0.00 0.00 38.29 1.73
2643 2768 2.512485 TCCGTTTGAGCGACAACTAA 57.488 45.000 0.00 0.00 38.29 2.24
2644 2769 2.288579 ACATCCGTTTGAGCGACAACTA 60.289 45.455 0.00 0.00 38.29 2.24
2645 2770 1.148310 CATCCGTTTGAGCGACAACT 58.852 50.000 0.00 0.00 38.29 3.16
2646 2771 0.865769 ACATCCGTTTGAGCGACAAC 59.134 50.000 0.00 0.00 38.29 3.32
2647 2772 2.442212 TACATCCGTTTGAGCGACAA 57.558 45.000 0.00 0.00 36.65 3.18
2648 2773 2.165641 AGATACATCCGTTTGAGCGACA 59.834 45.455 0.00 0.00 0.00 4.35
2649 2774 2.810650 AGATACATCCGTTTGAGCGAC 58.189 47.619 0.00 0.00 0.00 5.19
2650 2775 3.550233 GCTAGATACATCCGTTTGAGCGA 60.550 47.826 0.00 0.00 0.00 4.93
2651 2776 2.726760 GCTAGATACATCCGTTTGAGCG 59.273 50.000 0.00 0.00 0.00 5.03
2652 2777 3.491267 GTGCTAGATACATCCGTTTGAGC 59.509 47.826 0.00 0.00 0.00 4.26
2653 2778 3.731216 CGTGCTAGATACATCCGTTTGAG 59.269 47.826 0.00 0.00 0.00 3.02
2654 2779 3.490249 CCGTGCTAGATACATCCGTTTGA 60.490 47.826 0.00 0.00 0.00 2.69
2655 2780 2.794910 CCGTGCTAGATACATCCGTTTG 59.205 50.000 0.00 0.00 0.00 2.93
2656 2781 2.691526 TCCGTGCTAGATACATCCGTTT 59.308 45.455 0.00 0.00 0.00 3.60
2657 2782 2.034305 GTCCGTGCTAGATACATCCGTT 59.966 50.000 0.00 0.00 0.00 4.44
2658 2783 1.607628 GTCCGTGCTAGATACATCCGT 59.392 52.381 0.00 0.00 0.00 4.69
2659 2784 1.399855 CGTCCGTGCTAGATACATCCG 60.400 57.143 0.00 0.00 0.00 4.18
2660 2785 1.607628 ACGTCCGTGCTAGATACATCC 59.392 52.381 0.00 0.00 0.00 3.51
2661 2786 2.604855 CCACGTCCGTGCTAGATACATC 60.605 54.545 14.06 0.00 44.16 3.06
2662 2787 1.337071 CCACGTCCGTGCTAGATACAT 59.663 52.381 14.06 0.00 44.16 2.29
2663 2788 0.736636 CCACGTCCGTGCTAGATACA 59.263 55.000 14.06 0.00 44.16 2.29
2664 2789 1.002684 CTCCACGTCCGTGCTAGATAC 60.003 57.143 14.06 0.00 44.16 2.24
2665 2790 1.306148 CTCCACGTCCGTGCTAGATA 58.694 55.000 14.06 0.00 44.16 1.98
2666 2791 0.680280 ACTCCACGTCCGTGCTAGAT 60.680 55.000 20.20 7.85 44.16 1.98
2667 2792 0.892358 AACTCCACGTCCGTGCTAGA 60.892 55.000 20.20 10.65 44.16 2.43
2668 2793 0.038526 AAACTCCACGTCCGTGCTAG 60.039 55.000 14.06 14.50 44.16 3.42
2669 2794 0.038892 GAAACTCCACGTCCGTGCTA 60.039 55.000 14.06 3.95 44.16 3.49
2670 2795 1.300697 GAAACTCCACGTCCGTGCT 60.301 57.895 14.06 0.00 44.16 4.40
2671 2796 0.038892 TAGAAACTCCACGTCCGTGC 60.039 55.000 14.06 0.01 44.16 5.34
2672 2797 1.001048 TGTAGAAACTCCACGTCCGTG 60.001 52.381 12.66 12.66 45.02 4.94
2673 2798 1.000938 GTGTAGAAACTCCACGTCCGT 60.001 52.381 0.00 0.00 0.00 4.69
2674 2799 1.668047 GGTGTAGAAACTCCACGTCCG 60.668 57.143 0.00 0.00 38.81 4.79
2675 2800 1.617357 AGGTGTAGAAACTCCACGTCC 59.383 52.381 0.00 0.00 40.97 4.79
2676 2801 2.295349 TCAGGTGTAGAAACTCCACGTC 59.705 50.000 0.00 0.00 40.97 4.34
2677 2802 2.296471 CTCAGGTGTAGAAACTCCACGT 59.704 50.000 0.07 0.00 40.97 4.49
2678 2803 2.927014 GCTCAGGTGTAGAAACTCCACG 60.927 54.545 0.07 0.00 40.97 4.94
2679 2804 2.300437 AGCTCAGGTGTAGAAACTCCAC 59.700 50.000 0.07 0.00 40.97 4.02
2680 2805 2.563179 GAGCTCAGGTGTAGAAACTCCA 59.437 50.000 9.40 0.00 40.97 3.86
2681 2806 2.563179 TGAGCTCAGGTGTAGAAACTCC 59.437 50.000 13.74 0.00 39.18 3.85
2682 2807 3.944055 TGAGCTCAGGTGTAGAAACTC 57.056 47.619 13.74 0.00 0.00 3.01
2683 2808 5.683509 GCATATGAGCTCAGGTGTAGAAACT 60.684 44.000 22.96 2.84 0.00 2.66
2684 2809 4.509600 GCATATGAGCTCAGGTGTAGAAAC 59.490 45.833 22.96 5.66 0.00 2.78
2685 2810 4.406972 AGCATATGAGCTCAGGTGTAGAAA 59.593 41.667 22.96 0.00 42.18 2.52
2686 2811 3.963374 AGCATATGAGCTCAGGTGTAGAA 59.037 43.478 22.96 0.00 42.18 2.10
2687 2812 3.570540 AGCATATGAGCTCAGGTGTAGA 58.429 45.455 22.96 1.51 42.18 2.59
2697 2822 8.727458 ACTATTCATAGCAGGAGCATATGAGCT 61.727 40.741 6.97 9.20 45.49 4.09
2698 2823 3.606595 TCATAGCAGGAGCATATGAGC 57.393 47.619 6.97 1.86 45.49 4.26
2699 2824 6.876155 ACTATTCATAGCAGGAGCATATGAG 58.124 40.000 6.97 0.00 45.49 2.90
2700 2825 6.864151 ACTATTCATAGCAGGAGCATATGA 57.136 37.500 6.97 0.00 45.49 2.15
2701 2826 9.440773 TTTTACTATTCATAGCAGGAGCATATG 57.559 33.333 0.00 0.00 45.49 1.78
2705 2830 9.845740 TTTATTTTACTATTCATAGCAGGAGCA 57.154 29.630 0.00 0.00 45.49 4.26
2758 2883 9.606631 AACATTTCTTAAAGTATGCCACAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
2759 2884 9.606631 AAACATTTCTTAAAGTATGCCACAAAA 57.393 25.926 0.00 0.00 0.00 2.44
2760 2885 9.039870 CAAACATTTCTTAAAGTATGCCACAAA 57.960 29.630 0.00 0.00 0.00 2.83
2761 2886 8.200792 ACAAACATTTCTTAAAGTATGCCACAA 58.799 29.630 0.00 0.00 0.00 3.33
2762 2887 7.721402 ACAAACATTTCTTAAAGTATGCCACA 58.279 30.769 0.00 0.00 0.00 4.17
2763 2888 8.487176 CAACAAACATTTCTTAAAGTATGCCAC 58.513 33.333 0.00 0.00 0.00 5.01
2764 2889 8.200792 ACAACAAACATTTCTTAAAGTATGCCA 58.799 29.630 0.00 0.00 0.00 4.92
2765 2890 8.487176 CACAACAAACATTTCTTAAAGTATGCC 58.513 33.333 0.00 0.00 0.00 4.40
2766 2891 8.003784 GCACAACAAACATTTCTTAAAGTATGC 58.996 33.333 0.00 0.00 0.00 3.14
2767 2892 9.029243 TGCACAACAAACATTTCTTAAAGTATG 57.971 29.630 0.00 0.00 0.00 2.39
2768 2893 9.762933 ATGCACAACAAACATTTCTTAAAGTAT 57.237 25.926 0.00 0.00 0.00 2.12
2769 2894 9.029243 CATGCACAACAAACATTTCTTAAAGTA 57.971 29.630 0.00 0.00 0.00 2.24
2770 2895 7.465781 GCATGCACAACAAACATTTCTTAAAGT 60.466 33.333 14.21 0.00 0.00 2.66
2771 2896 6.847289 GCATGCACAACAAACATTTCTTAAAG 59.153 34.615 14.21 0.00 0.00 1.85
2772 2897 6.314648 TGCATGCACAACAAACATTTCTTAAA 59.685 30.769 18.46 0.00 0.00 1.52
2773 2898 5.814188 TGCATGCACAACAAACATTTCTTAA 59.186 32.000 18.46 0.00 0.00 1.85
2774 2899 5.354767 TGCATGCACAACAAACATTTCTTA 58.645 33.333 18.46 0.00 0.00 2.10
2775 2900 4.190001 TGCATGCACAACAAACATTTCTT 58.810 34.783 18.46 0.00 0.00 2.52
2776 2901 3.794717 TGCATGCACAACAAACATTTCT 58.205 36.364 18.46 0.00 0.00 2.52
2777 2902 4.533225 TTGCATGCACAACAAACATTTC 57.467 36.364 22.58 0.00 0.00 2.17
2778 2903 4.959596 TTTGCATGCACAACAAACATTT 57.040 31.818 22.58 0.00 0.00 2.32
2779 2904 4.959596 TTTTGCATGCACAACAAACATT 57.040 31.818 22.58 0.00 33.29 2.71
2780 2905 5.502153 AATTTTGCATGCACAACAAACAT 57.498 30.435 22.58 8.21 33.29 2.71
2781 2906 4.959596 AATTTTGCATGCACAACAAACA 57.040 31.818 22.58 0.00 33.29 2.83
2782 2907 4.433945 CGAAATTTTGCATGCACAACAAAC 59.566 37.500 22.58 11.47 33.29 2.93
2783 2908 4.093998 ACGAAATTTTGCATGCACAACAAA 59.906 33.333 22.58 18.36 0.00 2.83
2784 2909 3.620374 ACGAAATTTTGCATGCACAACAA 59.380 34.783 22.58 9.42 0.00 2.83
2785 2910 3.193263 ACGAAATTTTGCATGCACAACA 58.807 36.364 22.58 1.91 0.00 3.33
2786 2911 3.244814 TGACGAAATTTTGCATGCACAAC 59.755 39.130 22.58 7.72 0.00 3.32
2787 2912 3.451526 TGACGAAATTTTGCATGCACAA 58.548 36.364 22.58 21.53 0.00 3.33
2788 2913 3.089573 TGACGAAATTTTGCATGCACA 57.910 38.095 22.58 12.14 0.00 4.57
2789 2914 3.674281 TGATGACGAAATTTTGCATGCAC 59.326 39.130 22.58 6.78 0.00 4.57
2790 2915 3.910648 TGATGACGAAATTTTGCATGCA 58.089 36.364 18.46 18.46 0.00 3.96
2791 2916 4.907188 TTGATGACGAAATTTTGCATGC 57.093 36.364 11.82 11.82 0.00 4.06
2792 2917 7.051422 TCATTTGATGACGAAATTTTGCATG 57.949 32.000 15.66 0.00 33.59 4.06
2806 2931 4.463539 CCTTCCACCAATGTCATTTGATGA 59.536 41.667 3.75 0.00 36.84 2.92
2807 2932 4.751060 CCTTCCACCAATGTCATTTGATG 58.249 43.478 3.75 0.00 0.00 3.07
2808 2933 3.196254 GCCTTCCACCAATGTCATTTGAT 59.804 43.478 3.75 0.00 0.00 2.57
2809 2934 2.562298 GCCTTCCACCAATGTCATTTGA 59.438 45.455 3.75 0.00 0.00 2.69
2810 2935 2.299582 TGCCTTCCACCAATGTCATTTG 59.700 45.455 0.00 0.00 0.00 2.32
2811 2936 2.607499 TGCCTTCCACCAATGTCATTT 58.393 42.857 0.00 0.00 0.00 2.32
2812 2937 2.307496 TGCCTTCCACCAATGTCATT 57.693 45.000 0.00 0.00 0.00 2.57
2813 2938 2.104967 CATGCCTTCCACCAATGTCAT 58.895 47.619 0.00 0.00 0.00 3.06
2814 2939 1.548081 CATGCCTTCCACCAATGTCA 58.452 50.000 0.00 0.00 0.00 3.58
2815 2940 0.819582 CCATGCCTTCCACCAATGTC 59.180 55.000 0.00 0.00 0.00 3.06
2816 2941 0.114954 ACCATGCCTTCCACCAATGT 59.885 50.000 0.00 0.00 0.00 2.71
2817 2942 2.142356 TACCATGCCTTCCACCAATG 57.858 50.000 0.00 0.00 0.00 2.82
2818 2943 2.917713 TTACCATGCCTTCCACCAAT 57.082 45.000 0.00 0.00 0.00 3.16
2819 2944 2.685106 TTTACCATGCCTTCCACCAA 57.315 45.000 0.00 0.00 0.00 3.67
2820 2945 2.685106 TTTTACCATGCCTTCCACCA 57.315 45.000 0.00 0.00 0.00 4.17
2872 2997 7.900782 AAATCAGAGCTCCAAAATTCATTTG 57.099 32.000 10.93 0.00 46.54 2.32
2873 2998 8.913487 AAAAATCAGAGCTCCAAAATTCATTT 57.087 26.923 10.93 1.15 0.00 2.32
2900 3025 1.104577 GGTGGAGGTCGTGGCAAAAA 61.105 55.000 0.00 0.00 0.00 1.94
2901 3026 1.527380 GGTGGAGGTCGTGGCAAAA 60.527 57.895 0.00 0.00 0.00 2.44
2902 3027 2.112297 GGTGGAGGTCGTGGCAAA 59.888 61.111 0.00 0.00 0.00 3.68
2903 3028 2.063015 ATTGGTGGAGGTCGTGGCAA 62.063 55.000 0.00 0.00 0.00 4.52
2904 3029 2.525124 ATTGGTGGAGGTCGTGGCA 61.525 57.895 0.00 0.00 0.00 4.92
2905 3030 2.040544 CATTGGTGGAGGTCGTGGC 61.041 63.158 0.00 0.00 0.00 5.01
2906 3031 0.955428 CACATTGGTGGAGGTCGTGG 60.955 60.000 0.00 0.00 41.45 4.94
2907 3032 0.034756 TCACATTGGTGGAGGTCGTG 59.965 55.000 0.00 0.00 45.32 4.35
2908 3033 0.984230 ATCACATTGGTGGAGGTCGT 59.016 50.000 0.00 0.00 45.32 4.34
2909 3034 2.113860 AATCACATTGGTGGAGGTCG 57.886 50.000 0.00 0.00 45.32 4.79
2910 3035 2.420022 CGAAATCACATTGGTGGAGGTC 59.580 50.000 0.00 0.00 45.32 3.85
2911 3036 2.224769 ACGAAATCACATTGGTGGAGGT 60.225 45.455 0.00 0.00 45.32 3.85
2912 3037 2.162208 CACGAAATCACATTGGTGGAGG 59.838 50.000 0.00 0.00 45.32 4.30
2913 3038 3.073678 TCACGAAATCACATTGGTGGAG 58.926 45.455 0.00 0.00 45.32 3.86
2914 3039 3.133141 TCACGAAATCACATTGGTGGA 57.867 42.857 0.00 0.00 45.32 4.02
2915 3040 3.439825 TCATCACGAAATCACATTGGTGG 59.560 43.478 0.00 0.00 45.32 4.61
2916 3041 4.683501 TCATCACGAAATCACATTGGTG 57.316 40.909 0.00 0.00 46.66 4.17
2917 3042 5.703978 TTTCATCACGAAATCACATTGGT 57.296 34.783 0.00 0.00 38.72 3.67
2928 3053 4.150274 GTGCATGCAAAATTTCATCACGAA 59.850 37.500 24.58 0.00 0.00 3.85
2929 3054 3.674281 GTGCATGCAAAATTTCATCACGA 59.326 39.130 24.58 0.00 0.00 4.35
2930 3055 3.429207 TGTGCATGCAAAATTTCATCACG 59.571 39.130 24.58 0.00 0.00 4.35
2931 3056 4.994220 TGTGCATGCAAAATTTCATCAC 57.006 36.364 24.58 5.73 0.00 3.06
2932 3057 5.298347 TCTTGTGCATGCAAAATTTCATCA 58.702 33.333 23.32 10.55 0.00 3.07
2933 3058 5.849357 TCTTGTGCATGCAAAATTTCATC 57.151 34.783 23.32 7.93 0.00 2.92
2934 3059 6.038382 TGTTTCTTGTGCATGCAAAATTTCAT 59.962 30.769 23.32 0.00 0.00 2.57
2935 3060 5.353400 TGTTTCTTGTGCATGCAAAATTTCA 59.647 32.000 23.32 16.09 0.00 2.69
2936 3061 5.808403 TGTTTCTTGTGCATGCAAAATTTC 58.192 33.333 23.32 13.99 0.00 2.17
2937 3062 5.814764 TGTTTCTTGTGCATGCAAAATTT 57.185 30.435 23.32 0.00 0.00 1.82
2938 3063 6.380095 AATGTTTCTTGTGCATGCAAAATT 57.620 29.167 23.32 11.01 0.00 1.82
2939 3064 6.380095 AAATGTTTCTTGTGCATGCAAAAT 57.620 29.167 23.32 5.02 0.00 1.82
2940 3065 5.814764 AAATGTTTCTTGTGCATGCAAAA 57.185 30.435 24.58 23.06 0.00 2.44
2941 3066 5.814764 AAAATGTTTCTTGTGCATGCAAA 57.185 30.435 24.58 15.92 0.00 3.68
2942 3067 5.814764 AAAAATGTTTCTTGTGCATGCAA 57.185 30.435 24.58 6.97 0.00 4.08
3004 3129 8.624776 GCTCCTGCTATGAACAGTAAAATAAAT 58.375 33.333 0.00 0.00 36.03 1.40
3005 3130 7.609918 TGCTCCTGCTATGAACAGTAAAATAAA 59.390 33.333 0.00 0.00 40.48 1.40
3006 3131 7.109501 TGCTCCTGCTATGAACAGTAAAATAA 58.890 34.615 0.00 0.00 40.48 1.40
3007 3132 6.649155 TGCTCCTGCTATGAACAGTAAAATA 58.351 36.000 0.00 0.00 40.48 1.40
3008 3133 5.500234 TGCTCCTGCTATGAACAGTAAAAT 58.500 37.500 0.00 0.00 40.48 1.82
3009 3134 4.905429 TGCTCCTGCTATGAACAGTAAAA 58.095 39.130 0.00 0.00 40.48 1.52
3010 3135 4.551702 TGCTCCTGCTATGAACAGTAAA 57.448 40.909 0.00 0.00 40.48 2.01
3011 3136 4.760530 ATGCTCCTGCTATGAACAGTAA 57.239 40.909 0.00 0.00 40.48 2.24
3012 3137 5.539955 TCATATGCTCCTGCTATGAACAGTA 59.460 40.000 0.00 0.00 36.90 2.74
3013 3138 4.346127 TCATATGCTCCTGCTATGAACAGT 59.654 41.667 0.00 0.00 36.90 3.55
3014 3139 4.891260 TCATATGCTCCTGCTATGAACAG 58.109 43.478 0.00 0.00 36.90 3.16
3015 3140 4.801914 GCTCATATGCTCCTGCTATGAACA 60.802 45.833 0.00 0.00 38.05 3.18
3016 3141 3.683822 GCTCATATGCTCCTGCTATGAAC 59.316 47.826 0.00 0.00 38.05 3.18
3017 3142 3.581770 AGCTCATATGCTCCTGCTATGAA 59.418 43.478 0.00 0.00 39.34 2.57
3018 3143 3.171528 AGCTCATATGCTCCTGCTATGA 58.828 45.455 0.00 0.00 39.34 2.15
3019 3144 3.613494 AGCTCATATGCTCCTGCTATG 57.387 47.619 0.00 0.00 39.34 2.23
3029 3154 4.327982 TTCTACACCTGAGCTCATATGC 57.672 45.455 18.63 0.00 0.00 3.14
3030 3155 4.749099 GCTTTCTACACCTGAGCTCATATG 59.251 45.833 18.63 19.73 0.00 1.78
3031 3156 4.653341 AGCTTTCTACACCTGAGCTCATAT 59.347 41.667 18.63 5.36 39.32 1.78
3032 3157 4.026744 AGCTTTCTACACCTGAGCTCATA 58.973 43.478 18.63 5.70 39.32 2.15
3033 3158 2.836981 AGCTTTCTACACCTGAGCTCAT 59.163 45.455 18.63 4.63 39.32 2.90
3034 3159 2.251818 AGCTTTCTACACCTGAGCTCA 58.748 47.619 17.19 17.19 39.32 4.26
3035 3160 3.445805 AGTAGCTTTCTACACCTGAGCTC 59.554 47.826 6.82 6.82 45.90 4.09
3036 3161 3.436243 AGTAGCTTTCTACACCTGAGCT 58.564 45.455 0.00 1.58 45.90 4.09
3037 3162 3.878160 AGTAGCTTTCTACACCTGAGC 57.122 47.619 0.00 0.00 45.90 4.26
3038 3163 4.859798 CGAAAGTAGCTTTCTACACCTGAG 59.140 45.833 16.42 0.00 45.19 3.35
3039 3164 4.521639 TCGAAAGTAGCTTTCTACACCTGA 59.478 41.667 16.42 5.10 45.19 3.86
3040 3165 4.806330 TCGAAAGTAGCTTTCTACACCTG 58.194 43.478 16.42 3.26 45.19 4.00
3041 3166 5.419471 AGATCGAAAGTAGCTTTCTACACCT 59.581 40.000 16.42 6.57 45.19 4.00
3042 3167 5.652518 AGATCGAAAGTAGCTTTCTACACC 58.347 41.667 16.42 4.94 45.19 4.16
3043 3168 6.415573 GCTAGATCGAAAGTAGCTTTCTACAC 59.584 42.308 16.42 6.91 45.19 2.90
3044 3169 6.095021 TGCTAGATCGAAAGTAGCTTTCTACA 59.905 38.462 19.09 5.77 45.19 2.74
3045 3170 6.415573 GTGCTAGATCGAAAGTAGCTTTCTAC 59.584 42.308 19.09 9.28 45.19 2.59
3046 3171 6.459848 GGTGCTAGATCGAAAGTAGCTTTCTA 60.460 42.308 19.09 8.61 45.19 2.10
3047 3172 5.344884 GTGCTAGATCGAAAGTAGCTTTCT 58.655 41.667 19.09 5.41 45.19 2.52
3048 3173 4.504826 GGTGCTAGATCGAAAGTAGCTTTC 59.495 45.833 19.09 10.58 44.29 2.62
3049 3174 4.434520 GGTGCTAGATCGAAAGTAGCTTT 58.565 43.478 19.09 0.00 39.97 3.51
3050 3175 3.489398 CGGTGCTAGATCGAAAGTAGCTT 60.489 47.826 19.09 0.00 39.97 3.74
3051 3176 2.033550 CGGTGCTAGATCGAAAGTAGCT 59.966 50.000 19.09 0.00 39.97 3.32
3052 3177 2.033049 TCGGTGCTAGATCGAAAGTAGC 59.967 50.000 14.13 14.13 39.76 3.58
3053 3178 3.312973 ACTCGGTGCTAGATCGAAAGTAG 59.687 47.826 0.00 0.00 32.35 2.57
3054 3179 3.276857 ACTCGGTGCTAGATCGAAAGTA 58.723 45.455 0.00 0.00 32.35 2.24
3055 3180 2.093106 ACTCGGTGCTAGATCGAAAGT 58.907 47.619 0.00 0.00 32.35 2.66
3056 3181 2.853731 ACTCGGTGCTAGATCGAAAG 57.146 50.000 0.00 0.00 32.35 2.62
3057 3182 4.913335 AATACTCGGTGCTAGATCGAAA 57.087 40.909 0.00 0.00 32.35 3.46
3058 3183 4.261489 GGAAATACTCGGTGCTAGATCGAA 60.261 45.833 0.00 0.00 32.35 3.71
3059 3184 3.252701 GGAAATACTCGGTGCTAGATCGA 59.747 47.826 0.00 0.00 0.00 3.59
3060 3185 3.004419 TGGAAATACTCGGTGCTAGATCG 59.996 47.826 0.00 0.00 0.00 3.69
3061 3186 4.585955 TGGAAATACTCGGTGCTAGATC 57.414 45.455 0.00 0.00 0.00 2.75
3062 3187 5.128827 TCTTTGGAAATACTCGGTGCTAGAT 59.871 40.000 0.00 0.00 0.00 1.98
3063 3188 4.464951 TCTTTGGAAATACTCGGTGCTAGA 59.535 41.667 0.00 0.00 0.00 2.43
3064 3189 4.755411 TCTTTGGAAATACTCGGTGCTAG 58.245 43.478 0.00 0.00 0.00 3.42
3065 3190 4.811969 TCTTTGGAAATACTCGGTGCTA 57.188 40.909 0.00 0.00 0.00 3.49
3066 3191 3.695830 TCTTTGGAAATACTCGGTGCT 57.304 42.857 0.00 0.00 0.00 4.40
3067 3192 4.000988 TCTTCTTTGGAAATACTCGGTGC 58.999 43.478 0.00 0.00 0.00 5.01
3068 3193 6.554334 TTTCTTCTTTGGAAATACTCGGTG 57.446 37.500 0.00 0.00 0.00 4.94
3069 3194 6.940298 TCATTTCTTCTTTGGAAATACTCGGT 59.060 34.615 0.00 0.00 40.18 4.69
3070 3195 7.094805 TGTCATTTCTTCTTTGGAAATACTCGG 60.095 37.037 0.00 0.00 40.18 4.63
3071 3196 7.806690 TGTCATTTCTTCTTTGGAAATACTCG 58.193 34.615 0.00 0.00 40.18 4.18
3101 3226 7.507304 CGCGTTTCTCTTTCAGTAGAAATTTA 58.493 34.615 0.00 0.00 42.11 1.40
3423 3614 4.761304 AGGGAGGAGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
3427 3618 0.253394 AAAGGAAGGGAGGAGGGGAG 60.253 60.000 0.00 0.00 0.00 4.30
3428 3619 0.253207 GAAAGGAAGGGAGGAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
3429 3620 0.253394 AGAAAGGAAGGGAGGAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
3430 3621 1.675007 AAGAAAGGAAGGGAGGAGGG 58.325 55.000 0.00 0.00 0.00 4.30
3431 3622 3.816398 AAAAGAAAGGAAGGGAGGAGG 57.184 47.619 0.00 0.00 0.00 4.30
3432 3623 4.991776 AGAAAAAGAAAGGAAGGGAGGAG 58.008 43.478 0.00 0.00 0.00 3.69
3433 3624 4.415512 TGAGAAAAAGAAAGGAAGGGAGGA 59.584 41.667 0.00 0.00 0.00 3.71
3434 3625 4.520874 GTGAGAAAAAGAAAGGAAGGGAGG 59.479 45.833 0.00 0.00 0.00 4.30
3460 3651 3.932710 CACTGGTACCGTCTACGTACTTA 59.067 47.826 7.57 0.00 37.74 2.24
3463 3659 1.202076 GCACTGGTACCGTCTACGTAC 60.202 57.143 7.57 4.65 37.74 3.67
3472 3668 1.203758 TCATGTACTGCACTGGTACCG 59.796 52.381 7.57 4.79 38.84 4.02
3484 3680 4.102524 TGGAACCAGTCAAAGTCATGTACT 59.897 41.667 0.00 0.00 41.49 2.73
3485 3681 4.213482 GTGGAACCAGTCAAAGTCATGTAC 59.787 45.833 0.00 0.00 0.00 2.90
3490 3783 3.541632 GAAGTGGAACCAGTCAAAGTCA 58.458 45.455 1.44 0.00 37.80 3.41
3509 3802 2.354188 CACGAGCACGACACGGAA 60.354 61.111 11.40 0.00 42.66 4.30
3583 3876 5.959652 AAACCACGTTATTTTCTGTTTGC 57.040 34.783 0.00 0.00 0.00 3.68
3614 3907 7.783119 TCTTCCTGGCACTAGATTAATACAGTA 59.217 37.037 0.00 0.00 0.00 2.74
3626 3919 2.544694 CGTAGCATCTTCCTGGCACTAG 60.545 54.545 0.00 0.00 0.00 2.57
3661 3954 0.035458 ACAAAGACGGGCAGAGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
3687 3980 1.393539 CGCCACATGCTGTACTTGTAC 59.606 52.381 4.14 4.14 35.04 2.90
3688 3981 1.674519 CCGCCACATGCTGTACTTGTA 60.675 52.381 0.00 0.00 35.04 2.41
3689 3982 0.955428 CCGCCACATGCTGTACTTGT 60.955 55.000 0.00 0.00 37.13 3.16
3690 3983 1.796151 CCGCCACATGCTGTACTTG 59.204 57.895 0.00 0.00 38.05 3.16
3691 3984 2.040544 GCCGCCACATGCTGTACTT 61.041 57.895 0.00 0.00 38.05 2.24
3692 3985 2.436646 GCCGCCACATGCTGTACT 60.437 61.111 0.00 0.00 38.05 2.73
3693 3986 3.508840 GGCCGCCACATGCTGTAC 61.509 66.667 3.91 0.00 38.05 2.90
3770 4063 0.755686 GGGTCTGTCTGCCTGATAGG 59.244 60.000 0.00 0.00 38.80 2.57
3778 4075 2.067013 GAAAACTACGGGTCTGTCTGC 58.933 52.381 0.00 0.00 0.00 4.26
3827 4141 4.207635 GTCAGTGACGTTCGTTCATACAAA 59.792 41.667 7.68 0.00 0.00 2.83
4016 4356 4.882396 GGCGCCGGAGAAGAGCTC 62.882 72.222 12.58 5.27 43.17 4.09
4169 4509 7.499232 ACAGTATTAGCCAGTTAATCAATCACC 59.501 37.037 0.00 0.00 0.00 4.02
4170 4510 8.438676 ACAGTATTAGCCAGTTAATCAATCAC 57.561 34.615 0.00 0.00 0.00 3.06
4172 4512 8.662781 TGACAGTATTAGCCAGTTAATCAATC 57.337 34.615 0.00 0.00 0.00 2.67
4190 4534 9.419297 GTGTTAATCACTCACTAAATGACAGTA 57.581 33.333 2.21 0.00 43.13 2.74
4206 4550 6.278363 ACCACCATATCGTAGTGTTAATCAC 58.722 40.000 0.00 1.37 46.46 3.06
4207 4551 6.474140 ACCACCATATCGTAGTGTTAATCA 57.526 37.500 0.00 0.00 0.00 2.57
4213 4557 8.696043 TTATTAGTACCACCATATCGTAGTGT 57.304 34.615 0.00 0.00 0.00 3.55
4251 4595 4.029186 CCTGCACGCACGCAACAT 62.029 61.111 0.00 0.00 42.45 2.71
4270 4628 3.852572 GCTTCGAGTATATCACCGTCACC 60.853 52.174 0.00 0.00 0.00 4.02
4466 4824 5.430886 GGATGGCATGCATGTAGATGTATA 58.569 41.667 26.79 4.81 33.52 1.47
4467 4825 4.267536 GGATGGCATGCATGTAGATGTAT 58.732 43.478 26.79 11.22 35.46 2.29
4470 4828 1.816835 GGGATGGCATGCATGTAGATG 59.183 52.381 26.79 3.24 0.00 2.90
4471 4829 1.426215 TGGGATGGCATGCATGTAGAT 59.574 47.619 26.79 16.04 0.00 1.98
4473 4831 1.544246 CATGGGATGGCATGCATGTAG 59.456 52.381 26.79 3.17 0.00 2.74
4474 4832 1.133419 ACATGGGATGGCATGCATGTA 60.133 47.619 26.79 16.96 32.35 2.29
4475 4833 0.397957 ACATGGGATGGCATGCATGT 60.398 50.000 26.79 21.44 32.40 3.21
4476 4834 0.317160 GACATGGGATGGCATGCATG 59.683 55.000 22.70 22.70 38.49 4.06
4477 4835 1.176619 CGACATGGGATGGCATGCAT 61.177 55.000 21.36 11.12 38.56 3.96
4478 4836 1.824760 CGACATGGGATGGCATGCA 60.825 57.895 21.36 6.13 38.56 3.96
4479 4837 0.892358 ATCGACATGGGATGGCATGC 60.892 55.000 9.90 9.90 38.56 4.06
4510 4868 3.282021 TGGCTTCAATTAGGCTAAGCAG 58.718 45.455 17.91 9.77 44.81 4.24
4522 4880 2.292267 CTATTGGACGCTGGCTTCAAT 58.708 47.619 1.80 5.99 33.37 2.57
4536 4894 5.560966 AAATTTCTACGGTGCACTATTGG 57.439 39.130 17.98 3.43 0.00 3.16
4556 4914 9.878599 GTAACATTGATTCTCGAAGAAAGAAAA 57.121 29.630 0.00 0.00 37.82 2.29
4877 5291 8.495148 TGCATACATATATTTTCGTCATGTCAC 58.505 33.333 0.00 0.00 32.39 3.67
4979 5414 0.815734 GTCACGAGTAGGCAGGCTTA 59.184 55.000 0.00 0.00 0.00 3.09
4983 5418 1.478510 AGAATGTCACGAGTAGGCAGG 59.521 52.381 0.00 0.00 0.00 4.85
4984 5419 2.480416 GGAGAATGTCACGAGTAGGCAG 60.480 54.545 0.00 0.00 0.00 4.85
4988 5423 3.152261 GTGGGAGAATGTCACGAGTAG 57.848 52.381 0.00 0.00 0.00 2.57
5008 5443 1.369930 ACGCGTTGCACCAAATTCG 60.370 52.632 5.58 0.00 0.00 3.34
5031 5473 2.613595 TGCACATGAAGTTGTCACTGTC 59.386 45.455 0.00 0.00 39.72 3.51
5047 5491 0.179037 GATGCCTAGCCTGATGCACA 60.179 55.000 0.00 0.00 44.83 4.57
5480 5927 1.508746 GGACGACGACGACGAAGAC 60.509 63.158 25.15 12.72 42.66 3.01
5817 6270 2.044551 GAGAAGCAGGGGCCTTGG 60.045 66.667 18.18 1.35 42.56 3.61
5835 6293 5.422214 AGGATGGTAGAAATGAGAAACGT 57.578 39.130 0.00 0.00 0.00 3.99
5879 6341 0.954938 TGCGCTGCAGCATTTACAGA 60.955 50.000 36.03 8.95 42.92 3.41
5889 6351 1.556591 TTACACTCGTTGCGCTGCAG 61.557 55.000 10.11 10.11 40.61 4.41
5917 6379 6.519382 AACAGTACCTCTGGTTTTACAGTAC 58.481 40.000 0.00 0.00 42.00 2.73
5937 6403 7.651808 TCTTTTTCCTTGCTCTATCAAAACAG 58.348 34.615 0.00 0.00 0.00 3.16
6025 6491 5.818136 TCTTATTAATCCTGTGCTTGCAC 57.182 39.130 17.73 17.73 0.00 4.57
6056 6524 4.273480 CCCTGCTTTTAGGTCATATTCGTG 59.727 45.833 0.00 0.00 36.02 4.35
6096 6565 6.558771 TGTATTTCTGTGGTTTGATCTGTG 57.441 37.500 0.00 0.00 0.00 3.66
6365 7020 5.409520 GTGTGTCTATGACAAGCTGATTCAA 59.590 40.000 1.73 0.00 44.49 2.69
6366 7021 4.931601 GTGTGTCTATGACAAGCTGATTCA 59.068 41.667 1.73 0.00 44.49 2.57
6582 7237 0.179121 AACGACGCCGATGCTATCAA 60.179 50.000 0.00 0.00 39.50 2.57
6659 7314 5.864418 TGGAGCACTACGGAATAAATAGT 57.136 39.130 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.