AutoCloner

Multiple sequence alignment - TraesCS6D01G278700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G278700	chr6D	100.000	6886	0	0	1	6886	387037696	387044581	0.000000e+00	12717.0
1	TraesCS6D01G278700	chr6D	86.410	4047	416	89	2093	6062	386947062	386951051	0.000000e+00	4303.0
2	TraesCS6D01G278700	chr6D	83.503	982	130	21	631	1605	386945909	386946865	0.000000e+00	887.0
3	TraesCS6D01G278700	chr6A	94.994	6292	152	55	8	6202	532312894	532319119	0.000000e+00	9723.0
4	TraesCS6D01G278700	chr6A	85.894	4140	428	77	2085	6145	532158892	532162954	0.000000e+00	4266.0
5	TraesCS6D01G278700	chr6A	94.571	700	17	8	6199	6886	532337039	532337729	0.000000e+00	1062.0
6	TraesCS6D01G278700	chr6A	87.699	691	79	6	897	1583	532157968	532158656	0.000000e+00	800.0
7	TraesCS6D01G278700	chr6A	100.000	35	0	0	6199	6233	532336362	532336396	1.600000e-06	65.8
8	TraesCS6D01G278700	chr6B	93.027	4704	202	53	1	4647	578395544	578400178	0.000000e+00	6754.0
9	TraesCS6D01G278700	chr6B	96.447	4025	124	11	2116	6126	578298384	578302403	0.000000e+00	6623.0
10	TraesCS6D01G278700	chr6B	86.751	3857	394	66	2145	5927	578209907	578213720	0.000000e+00	4183.0
11	TraesCS6D01G278700	chr6B	92.531	2276	119	23	4634	6886	578400199	578402446	0.000000e+00	3214.0
12	TraesCS6D01G278700	chr6B	93.985	1995	73	20	1	1985	578292987	578294944	0.000000e+00	2976.0
13	TraesCS6D01G278700	chr6B	82.460	992	120	31	621	1605	578208693	578209637	0.000000e+00	819.0
14	TraesCS6D01G278700	chr6B	93.659	205	6	3	1	204	578395112	578395310	4.040000e-77	300.0
15	TraesCS6D01G278700	chr1B	86.677	668	71	7	1332	1985	667632399	667633062	0.000000e+00	725.0
16	TraesCS6D01G278700	chr4A	86.228	668	74	7	1332	1985	738537559	738536896	0.000000e+00	708.0
17	TraesCS6D01G278700	chr5A	85.891	567	69	9	1424	1985	458111893	458111333	1.650000e-165	593.0
18	TraesCS6D01G278700	chr7D	89.028	319	35	0	1080	1398	611161674	611161356	5.010000e-106	396.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G278700	chr6D	387037696	387044581	6885	False	12717.000000	12717	100.000000	1	6886	1	chr6D.!!$F1	6885
1	TraesCS6D01G278700	chr6D	386945909	386951051	5142	False	2595.000000	4303	84.956500	631	6062	2	chr6D.!!$F2	5431
2	TraesCS6D01G278700	chr6A	532312894	532319119	6225	False	9723.000000	9723	94.994000	8	6202	1	chr6A.!!$F1	6194
3	TraesCS6D01G278700	chr6A	532157968	532162954	4986	False	2533.000000	4266	86.796500	897	6145	2	chr6A.!!$F2	5248
4	TraesCS6D01G278700	chr6A	532336362	532337729	1367	False	563.900000	1062	97.285500	6199	6886	2	chr6A.!!$F3	687
5	TraesCS6D01G278700	chr6B	578292987	578302403	9416	False	4799.500000	6623	95.216000	1	6126	2	chr6B.!!$F2	6125
6	TraesCS6D01G278700	chr6B	578395112	578402446	7334	False	3422.666667	6754	93.072333	1	6886	3	chr6B.!!$F3	6885
7	TraesCS6D01G278700	chr6B	578208693	578213720	5027	False	2501.000000	4183	84.605500	621	5927	2	chr6B.!!$F1	5306
8	TraesCS6D01G278700	chr1B	667632399	667633062	663	False	725.000000	725	86.677000	1332	1985	1	chr1B.!!$F1	653
9	TraesCS6D01G278700	chr4A	738536896	738537559	663	True	708.000000	708	86.228000	1332	1985	1	chr4A.!!$R1	653
10	TraesCS6D01G278700	chr5A	458111333	458111893	560	True	593.000000	593	85.891000	1424	1985	1	chr5A.!!$R1	561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
390	826	0.942721	ACTAAACCCCCAAACCCCAA	59.057	50.000	0.00	0.00	4.12	F
616	1075	1.003355	TGTCTGCTTGCTAGTGCCC	60.003	57.895	0.00	38.71	5.36	F
1346	1839	1.543358	CTGCCTTCTGAGGGAAAAAGC	59.457	52.381	10.38	43.46	3.51	F
1864	2388	1.689984	TGCTGTGTTTGGAATGCTGA	58.310	45.000	0.00	0.00	4.26	F
2228	6090	1.268079	GTTTCTCAGGTTCAAGCTGCC	59.732	52.381	11.99	43.02	4.85	F
3882	7751	0.108804	CCGCACACTGAAGTACGGAT	60.109	55.000	11.33	39.21	4.18	F
4463	8346	4.320494	CCAGCACCAACAGAAACATTAGAC	60.320	45.833	0.00	0.00	2.59	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1346	1839	2.223688	CCGCTCCACAGAACAGATAGAG	60.224	54.545	0.00	0.00	2.43	R
1702	2219	2.706339	ACATCTGTCATGGAGAAGCC	57.294	50.000	0.00	37.10	4.35	R
2222	6084	2.733956	TCATAAATTTTCGGGGCAGCT	58.266	42.857	0.00	0.00	4.24	R
3497	7366	5.159273	TGTATGCAAGGACATCAAGTGTA	57.841	39.130	0.00	42.36	2.90	R
4313	8196	2.633967	AGGCCTGCATGAACAAAATTCA	59.366	40.909	3.11	0.00	2.57	R
5590	9580	1.000274	GCAAAGATTTCACCGCCAGTT	60.000	47.619	0.00	0.00	3.16	R
6009	10013	2.479837	CACAAGGTTCGCAGTACTTCA	58.520	47.619	0.00	0.00	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
111	117	1.033574	AAGGAACCCTAGCTCGATCG	58.966	55.000	9.36	9.36	31.13	3.69
368	804	4.096681	GTCTTCCTGAATTTTGGGGGATT	58.903	43.478	0.00	0.00	0.00	3.01
370	806	2.733956	TCCTGAATTTTGGGGGATTCG	58.266	47.619	0.00	0.00	35.53	3.34
390	826	0.942721	ACTAAACCCCCAAACCCCAA	59.057	50.000	0.00	0.00	0.00	4.12
395	831	2.854076	CCCCAAACCCCAAGCTCT	59.146	61.111	0.00	0.00	0.00	4.09
523	963	6.677781	ATGTACGTCCCTGATTGTTTTATG	57.322	37.500	0.00	0.00	0.00	1.90
531	971	7.035612	GTCCCTGATTGTTTTATGGACAAATC	58.964	38.462	0.00	0.00	40.10	2.17
538	978	6.739331	TGTTTTATGGACAAATCTTTGGGT	57.261	33.333	7.51	0.00	42.34	4.51
542	982	1.611491	TGGACAAATCTTTGGGTTCGC	59.389	47.619	7.51	0.00	42.34	4.70
544	984	1.886542	GACAAATCTTTGGGTTCGCCT	59.113	47.619	7.51	0.00	42.34	5.52
545	985	3.078837	GACAAATCTTTGGGTTCGCCTA	58.921	45.455	7.51	0.00	42.34	3.93
574	1033	3.628017	CCGTTGACCTTTTTAGCTGTTG	58.372	45.455	0.00	0.00	0.00	3.33
604	1063	1.362406	GCTTTACCCGAGCTGTCTGC	61.362	60.000	0.00	0.00	43.29	4.26
616	1075	1.003355	TGTCTGCTTGCTAGTGCCC	60.003	57.895	0.00	0.00	38.71	5.36
619	1078	2.047274	TGCTTGCTAGTGCCCGAC	60.047	61.111	0.00	0.00	38.71	4.79
655	1114	4.602995	TGTTCTTTTGTCGGCATGTTTAC	58.397	39.130	0.00	0.00	0.00	2.01
657	1116	2.873472	TCTTTTGTCGGCATGTTTACGT	59.127	40.909	0.00	0.00	0.00	3.57
671	1130	6.032042	GCATGTTTACGTTACTGCATTGTAAC	59.968	38.462	15.53	15.53	45.06	2.50
732	1213	4.485024	CGTTGCATACGGATCTACTACT	57.515	45.455	11.89	0.00	46.42	2.57
733	1214	5.602458	CGTTGCATACGGATCTACTACTA	57.398	43.478	11.89	0.00	46.42	1.82
734	1215	5.380651	CGTTGCATACGGATCTACTACTAC	58.619	45.833	11.89	0.00	46.42	2.73
735	1216	5.178996	CGTTGCATACGGATCTACTACTACT	59.821	44.000	11.89	0.00	46.42	2.57
873	1361	8.629158	AGAACTCAAATGTAAAACTGCAACATA	58.371	29.630	1.53	0.00	33.59	2.29
891	1379	9.905713	TGCAACATAGATTTCTTCCTAAATAGT	57.094	29.630	0.00	0.00	0.00	2.12
996	1486	7.745198	ACTGCTGTAGTTTTGGTATGAACCATA	60.745	37.037	0.00	0.00	46.16	2.74
1119	1609	2.899339	GCGATCAAGCTCAGGCCC	60.899	66.667	0.00	0.00	39.73	5.80
1346	1839	1.543358	CTGCCTTCTGAGGGAAAAAGC	59.457	52.381	10.38	0.00	43.46	3.51
1673	2182	6.560253	ACATTACTGAGTTCACATTGTTCC	57.440	37.500	0.00	0.00	0.00	3.62
1724	2241	4.517285	GGCTTCTCCATGACAGATGTAAA	58.483	43.478	0.00	0.00	34.01	2.01
1802	2319	7.023575	GTCAACTTGTGCCAGAAACAATATAG	58.976	38.462	0.00	0.00	36.95	1.31
1864	2388	1.689984	TGCTGTGTTTGGAATGCTGA	58.310	45.000	0.00	0.00	0.00	4.26
1972	2500	7.760340	GGGAAAATGTTTGTGTGTTGTTAAGTA	59.240	33.333	0.00	0.00	0.00	2.24
2084	2655	5.711976	CAGTTTCCAGTATTTCCTCAATGGT	59.288	40.000	0.00	0.00	37.07	3.55
2085	2656	6.209391	CAGTTTCCAGTATTTCCTCAATGGTT	59.791	38.462	0.00	0.00	37.07	3.67
2086	2657	6.209391	AGTTTCCAGTATTTCCTCAATGGTTG	59.791	38.462	0.00	0.00	37.07	3.77
2087	2658	4.016444	TCCAGTATTTCCTCAATGGTTGC	58.984	43.478	0.00	0.00	37.07	4.17
2088	2659	3.763360	CCAGTATTTCCTCAATGGTTGCA	59.237	43.478	0.00	0.00	37.07	4.08
2089	2660	4.403432	CCAGTATTTCCTCAATGGTTGCAT	59.597	41.667	0.00	0.00	37.07	3.96
2090	2661	5.593909	CCAGTATTTCCTCAATGGTTGCATA	59.406	40.000	0.00	0.00	37.07	3.14
2091	2662	6.460123	CCAGTATTTCCTCAATGGTTGCATAC	60.460	42.308	0.00	0.00	37.07	2.39
2222	6084	4.610605	TGTATCCGTTTCTCAGGTTCAA	57.389	40.909	0.00	0.00	0.00	2.69
2228	6090	1.268079	GTTTCTCAGGTTCAAGCTGCC	59.732	52.381	11.99	0.00	43.02	4.85
2240	6102	3.096092	TCAAGCTGCCCCGAAAATTTAT	58.904	40.909	0.00	0.00	0.00	1.40
3882	7751	0.108804	CCGCACACTGAAGTACGGAT	60.109	55.000	11.33	0.00	39.21	4.18
4313	8196	9.829507	TTGTCCTTTGTTATTGAAATCAATGTT	57.170	25.926	16.85	0.00	45.34	2.71
4463	8346	4.320494	CCAGCACCAACAGAAACATTAGAC	60.320	45.833	0.00	0.00	0.00	2.59
4648	8581	8.574737	TCTGAAGAGTTGACTACTTAAACCTAC	58.425	37.037	0.00	0.00	37.17	3.18
4779	8740	7.707893	CCAATGTTACCCTTCATTCATTTCATC	59.292	37.037	0.00	0.00	32.85	2.92
4836	8803	7.215789	ACAGTATAGGCTCAATTCTTGATGAG	58.784	38.462	0.00	0.00	44.66	2.90
5513	9503	5.864418	TGGAGCACTACGGAATAAATAGT	57.136	39.130	0.00	0.00	0.00	2.12
5590	9580	0.179121	AACGACGCCGATGCTATCAA	60.179	50.000	0.00	0.00	39.50	2.57
5806	9796	4.931601	GTGTGTCTATGACAAGCTGATTCA	59.068	41.667	1.73	0.00	44.49	2.57
5807	9797	5.409520	GTGTGTCTATGACAAGCTGATTCAA	59.590	40.000	1.73	0.00	44.49	2.69
6009	10013	4.842574	TGTGTTGATGTACATGTGGCTAT	58.157	39.130	14.43	0.00	0.00	2.97
6076	10116	6.558771	TGTATTTCTGTGGTTTGATCTGTG	57.441	37.500	0.00	0.00	0.00	3.66
6116	10157	4.273480	CCCTGCTTTTAGGTCATATTCGTG	59.727	45.833	0.00	0.00	36.02	4.35
6147	10190	5.818136	TCTTATTAATCCTGTGCTTGCAC	57.182	39.130	17.73	17.73	0.00	4.57
6235	10278	7.651808	TCTTTTTCCTTGCTCTATCAAAACAG	58.348	34.615	0.00	0.00	0.00	3.16
6255	10298	6.519382	AACAGTACCTCTGGTTTTACAGTAC	58.481	40.000	0.00	0.00	42.00	2.73
6256	10299	5.159209	CAGTACCTCTGGTTTTACAGTACG	58.841	45.833	0.00	0.00	40.23	3.67
6257	10300	4.829492	AGTACCTCTGGTTTTACAGTACGT	59.171	41.667	0.00	0.00	39.48	3.57
6258	10301	6.003950	AGTACCTCTGGTTTTACAGTACGTA	58.996	40.000	0.00	0.00	39.48	3.57
6283	10330	1.556591	TTACACTCGTTGCGCTGCAG	61.557	55.000	10.11	10.11	40.61	4.41
6293	10340	0.954938	TGCGCTGCAGCATTTACAGA	60.955	50.000	36.03	8.95	42.92	3.41
6337	10388	5.422214	AGGATGGTAGAAATGAGAAACGT	57.578	39.130	0.00	0.00	0.00	3.99
6355	10411	2.044551	GAGAAGCAGGGGCCTTGG	60.045	66.667	18.18	1.35	42.56	3.61
6692	10754	1.508746	GGACGACGACGACGAAGAC	60.509	63.158	25.15	12.72	42.66	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	1.669795	GGCAGGAATGGCTTTTTGTCG	60.670	52.381	0.00	0.00	0.00	4.35
132	138	4.712873	CCCGACAACGAAACGCGC	62.713	66.667	5.73	0.00	46.04	6.86
135	141	1.834458	GAACCCCCGACAACGAAACG	61.834	60.000	0.00	0.00	42.66	3.60
368	804	0.401356	GGGTTTGGGGGTTTAGTCGA	59.599	55.000	0.00	0.00	0.00	4.20
370	806	0.483770	TGGGGTTTGGGGGTTTAGTC	59.516	55.000	0.00	0.00	0.00	2.59
411	847	4.141482	GCAACACCCTCCTCTATTATTGGA	60.141	45.833	0.00	0.00	0.00	3.53
498	938	5.622770	AAAACAATCAGGGACGTACATTC	57.377	39.130	0.00	0.00	0.00	2.67
523	963	1.067846	GGCGAACCCAAAGATTTGTCC	60.068	52.381	4.71	0.00	36.45	4.02
574	1033	2.619646	TCGGGTAAAGCAAGAAACCAAC	59.380	45.455	0.00	0.00	33.46	3.77
604	1063	1.078759	CTTCGTCGGGCACTAGCAAG	61.079	60.000	0.00	0.00	44.61	4.01
616	1075	0.243907	ACAGACATCCCACTTCGTCG	59.756	55.000	0.00	0.00	33.56	5.12
619	1078	2.751166	AGAACAGACATCCCACTTCG	57.249	50.000	0.00	0.00	0.00	3.79
657	1116	6.459024	GCATAAATCCCGTTACAATGCAGTAA	60.459	38.462	0.00	0.00	33.25	2.24
730	1211	4.818005	CGGTTTCACCCAAAACTAAGTAGT	59.182	41.667	0.00	0.00	38.81	2.73
731	1212	4.818005	ACGGTTTCACCCAAAACTAAGTAG	59.182	41.667	0.00	0.00	38.81	2.57
732	1213	4.779696	ACGGTTTCACCCAAAACTAAGTA	58.220	39.130	0.00	0.00	38.81	2.24
733	1214	3.623703	ACGGTTTCACCCAAAACTAAGT	58.376	40.909	0.00	0.00	38.81	2.24
734	1215	4.642445	AACGGTTTCACCCAAAACTAAG	57.358	40.909	0.00	0.00	38.81	2.18
735	1216	4.461781	TCAAACGGTTTCACCCAAAACTAA	59.538	37.500	2.51	0.00	38.81	2.24
891	1379	8.961634	GCAGATATATGTCAGGTCTTCTATGTA	58.038	37.037	2.04	0.00	0.00	2.29
892	1380	7.452813	TGCAGATATATGTCAGGTCTTCTATGT	59.547	37.037	2.04	0.00	0.00	2.29
893	1381	7.834803	TGCAGATATATGTCAGGTCTTCTATG	58.165	38.462	2.04	0.00	0.00	2.23
894	1382	7.892771	TCTGCAGATATATGTCAGGTCTTCTAT	59.107	37.037	13.74	0.00	0.00	1.98
952	1442	7.423199	ACAGCAGTGCATAATCATGATTAAAG	58.577	34.615	27.42	22.87	36.90	1.85
996	1486	3.589951	ATAGTCTTGCTGCCCATGATT	57.410	42.857	0.00	0.00	31.26	2.57
1006	1496	3.055530	CCTGACACCTGAATAGTCTTGCT	60.056	47.826	0.00	0.00	33.56	3.91
1119	1609	3.571401	AGTTTGCAGAGATGTTCTTTGGG	59.429	43.478	0.00	0.00	32.41	4.12
1346	1839	2.223688	CCGCTCCACAGAACAGATAGAG	60.224	54.545	0.00	0.00	0.00	2.43
1596	2099	6.713450	AGCAGAAAAGGAAAATGATTTGCAAT	59.287	30.769	0.00	0.00	39.15	3.56
1702	2219	2.706339	ACATCTGTCATGGAGAAGCC	57.294	50.000	0.00	0.00	37.10	4.35
1802	2319	7.832503	AGGCAACAAAATGAAATATAGCAAC	57.167	32.000	0.00	0.00	41.41	4.17
1864	2388	5.594317	ACTCTACAAAATTCAAGTGCACCTT	59.406	36.000	14.63	4.39	0.00	3.50
1937	2461	9.474313	ACACACAAACATTTTCCCAGTATATAT	57.526	29.630	0.00	0.00	0.00	0.86
1940	2464	7.068839	ACAACACACAAACATTTTCCCAGTATA	59.931	33.333	0.00	0.00	0.00	1.47
2222	6084	2.733956	TCATAAATTTTCGGGGCAGCT	58.266	42.857	0.00	0.00	0.00	4.24
2228	6090	8.369588	CGTATGTTTTGTTCATAAATTTTCGGG	58.630	33.333	0.00	0.00	31.00	5.14
2240	6102	2.873472	AGAACGGCGTATGTTTTGTTCA	59.127	40.909	15.20	0.00	38.46	3.18
3497	7366	5.159273	TGTATGCAAGGACATCAAGTGTA	57.841	39.130	0.00	0.00	42.36	2.90
4313	8196	2.633967	AGGCCTGCATGAACAAAATTCA	59.366	40.909	3.11	0.00	0.00	2.57
4648	8581	4.843220	AAAACCATGCAGACTCAGAAAG	57.157	40.909	0.00	0.00	0.00	2.62
4691	8628	7.839680	AAAAAGATCTACATTTTGGACTGGT	57.160	32.000	0.00	0.00	29.99	4.00
4779	8740	2.393271	ATTGGAAGGAACAGAGAGCG	57.607	50.000	0.00	0.00	0.00	5.03
4836	8803	3.391296	TCCAATCTAGCCCCACATTAGTC	59.609	47.826	0.00	0.00	0.00	2.59
5513	9503	5.512060	GCATCCACTTATTATCTCAGCCTCA	60.512	44.000	0.00	0.00	0.00	3.86
5590	9580	1.000274	GCAAAGATTTCACCGCCAGTT	60.000	47.619	0.00	0.00	0.00	3.16
5806	9796	5.067805	ACAAAGTTCTTCTTCCGCTTGATTT	59.932	36.000	0.00	0.00	35.02	2.17
5807	9797	4.580580	ACAAAGTTCTTCTTCCGCTTGATT	59.419	37.500	0.00	0.00	35.02	2.57
6009	10013	2.479837	CACAAGGTTCGCAGTACTTCA	58.520	47.619	0.00	0.00	0.00	3.02
6116	10157	6.204359	CACAGGATTAATAAGAACATGCAGC	58.796	40.000	0.00	0.00	0.00	5.25
6147	10190	9.143631	GGTCTTCCATACATTTCAAATTTTCAG	57.856	33.333	0.00	0.00	0.00	3.02
6235	10278	5.126396	ACGTACTGTAAAACCAGAGGTAC	57.874	43.478	0.00	0.00	33.12	3.34
6255	10298	4.252902	CGCAACGAGTGTAAATTCATACG	58.747	43.478	0.00	0.00	0.00	3.06
6256	10299	4.019867	GCGCAACGAGTGTAAATTCATAC	58.980	43.478	0.30	0.00	0.00	2.39
6257	10300	3.930229	AGCGCAACGAGTGTAAATTCATA	59.070	39.130	11.47	0.00	0.00	2.15
6258	10301	2.742053	AGCGCAACGAGTGTAAATTCAT	59.258	40.909	11.47	0.00	0.00	2.57
6337	10388	2.759114	CAAGGCCCCTGCTTCTCA	59.241	61.111	0.00	0.00	37.74	3.27
6355	10411	6.428771	TGCTAACTGAACCCTGTAATTAACAC	59.571	38.462	0.00	0.00	33.45	3.32
6392	10448	5.472137	ACAGAGTCTGTACAGTTCTCTTCTC	59.528	44.000	30.78	21.96	43.46	2.87
6393	10449	5.381757	ACAGAGTCTGTACAGTTCTCTTCT	58.618	41.667	30.78	22.45	43.46	2.85
6394	10450	5.699097	ACAGAGTCTGTACAGTTCTCTTC	57.301	43.478	30.78	18.58	43.46	2.87
6395	10451	6.773685	AGTAACAGAGTCTGTACAGTTCTCTT	59.226	38.462	30.78	24.15	44.62	2.85
6396	10452	6.205853	CAGTAACAGAGTCTGTACAGTTCTCT	59.794	42.308	29.21	29.21	44.62	3.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.