Multiple sequence alignment - TraesCS6D01G278000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G278000 chr6D 100.000 3902 0 0 1 3902 386437652 386441553 0.000000e+00 7206.0
1 TraesCS6D01G278000 chr6A 92.612 3181 168 25 624 3781 531520121 531523257 0.000000e+00 4510.0
2 TraesCS6D01G278000 chr6A 89.109 303 26 4 345 640 531519806 531520108 1.710000e-98 370.0
3 TraesCS6D01G278000 chr6A 89.362 94 10 0 256 349 531519641 531519734 6.850000e-23 119.0
4 TraesCS6D01G278000 chr6B 91.825 3009 166 32 345 3321 577361658 577364618 0.000000e+00 4120.0
5 TraesCS6D01G278000 chr6B 82.941 510 27 14 3319 3781 577364671 577365167 4.690000e-109 405.0
6 TraesCS6D01G278000 chr6B 97.500 80 2 0 3823 3902 577365179 577365258 1.890000e-28 137.0
7 TraesCS6D01G278000 chr6B 90.278 72 7 0 256 327 577359992 577360063 1.150000e-15 95.3
8 TraesCS6D01G278000 chr4D 99.219 256 2 0 1 256 95046640 95046385 2.750000e-126 462.0
9 TraesCS6D01G278000 chr7D 95.312 256 12 0 1 256 192080105 192080360 1.310000e-109 407.0
10 TraesCS6D01G278000 chr5A 95.000 240 12 0 1 240 524122405 524122644 1.020000e-100 377.0
11 TraesCS6D01G278000 chr2B 90.980 255 22 1 1 255 706186396 706186143 3.730000e-90 342.0
12 TraesCS6D01G278000 chr4A 100.000 29 0 0 729 757 615436455 615436427 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G278000 chr6D 386437652 386441553 3901 False 7206.000000 7206 100.000 1 3902 1 chr6D.!!$F1 3901
1 TraesCS6D01G278000 chr6A 531519641 531523257 3616 False 1666.333333 4510 90.361 256 3781 3 chr6A.!!$F1 3525
2 TraesCS6D01G278000 chr6B 577359992 577365258 5266 False 1189.325000 4120 90.636 256 3902 4 chr6B.!!$F1 3646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.030908 CCACCTCTAGTTCCGATCGC 59.969 60.0 10.32 0.0 0.0 4.58 F
90 91 0.030908 CACCTCTAGTTCCGATCGCC 59.969 60.0 10.32 0.0 0.0 5.54 F
1195 2818 0.037232 CCCAACAACCTCCGAGAGAC 60.037 60.0 0.00 0.0 0.0 3.36 F
1196 2819 0.037232 CCAACAACCTCCGAGAGACC 60.037 60.0 0.00 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 3256 0.107508 ATGTTGGCCTCGTCCATCTG 60.108 55.000 3.32 0.0 35.77 2.90 R
1986 3624 0.315251 TGTCGAGTGCCTCTTCACAG 59.685 55.000 0.00 0.0 39.35 3.66 R
2652 4290 0.960861 GAAGCCCTGCCAAGGTGTAC 60.961 60.000 0.00 0.0 42.74 2.90 R
3070 4713 1.069358 GCCCAACTATCCTTCTCCTCG 59.931 57.143 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.963944 AGAGAGGCAGTGTGGAGT 57.036 55.556 0.00 0.00 0.00 3.85
18 19 2.360138 AGAGAGGCAGTGTGGAGTG 58.640 57.895 0.00 0.00 0.00 3.51
19 20 1.190833 AGAGAGGCAGTGTGGAGTGG 61.191 60.000 0.00 0.00 0.00 4.00
20 21 1.460305 AGAGGCAGTGTGGAGTGGT 60.460 57.895 0.00 0.00 0.00 4.16
21 22 1.302033 GAGGCAGTGTGGAGTGGTG 60.302 63.158 0.00 0.00 0.00 4.17
22 23 2.044806 GAGGCAGTGTGGAGTGGTGT 62.045 60.000 0.00 0.00 0.00 4.16
23 24 1.152963 GGCAGTGTGGAGTGGTGTT 60.153 57.895 0.00 0.00 0.00 3.32
24 25 1.447317 GGCAGTGTGGAGTGGTGTTG 61.447 60.000 0.00 0.00 0.00 3.33
25 26 0.463654 GCAGTGTGGAGTGGTGTTGA 60.464 55.000 0.00 0.00 0.00 3.18
26 27 1.815408 GCAGTGTGGAGTGGTGTTGAT 60.815 52.381 0.00 0.00 0.00 2.57
27 28 1.875514 CAGTGTGGAGTGGTGTTGATG 59.124 52.381 0.00 0.00 0.00 3.07
28 29 1.490490 AGTGTGGAGTGGTGTTGATGT 59.510 47.619 0.00 0.00 0.00 3.06
29 30 1.873591 GTGTGGAGTGGTGTTGATGTC 59.126 52.381 0.00 0.00 0.00 3.06
30 31 1.148310 GTGGAGTGGTGTTGATGTCG 58.852 55.000 0.00 0.00 0.00 4.35
31 32 0.034756 TGGAGTGGTGTTGATGTCGG 59.965 55.000 0.00 0.00 0.00 4.79
32 33 0.034896 GGAGTGGTGTTGATGTCGGT 59.965 55.000 0.00 0.00 0.00 4.69
33 34 1.148310 GAGTGGTGTTGATGTCGGTG 58.852 55.000 0.00 0.00 0.00 4.94
34 35 0.756294 AGTGGTGTTGATGTCGGTGA 59.244 50.000 0.00 0.00 0.00 4.02
35 36 0.865769 GTGGTGTTGATGTCGGTGAC 59.134 55.000 0.00 0.00 0.00 3.67
47 48 2.262915 GGTGACGTGGAGGAGCTG 59.737 66.667 0.00 0.00 0.00 4.24
48 49 2.262915 GTGACGTGGAGGAGCTGG 59.737 66.667 0.00 0.00 0.00 4.85
49 50 2.203640 TGACGTGGAGGAGCTGGT 60.204 61.111 0.00 0.00 0.00 4.00
50 51 2.276116 TGACGTGGAGGAGCTGGTC 61.276 63.158 0.00 0.00 0.00 4.02
51 52 2.203640 ACGTGGAGGAGCTGGTCA 60.204 61.111 9.30 0.00 0.00 4.02
52 53 1.608717 GACGTGGAGGAGCTGGTCAT 61.609 60.000 9.30 0.50 0.00 3.06
53 54 1.142748 CGTGGAGGAGCTGGTCATC 59.857 63.158 12.62 12.62 35.08 2.92
56 57 4.056805 GAGGAGCTGGTCATCCCA 57.943 61.111 10.15 0.00 42.51 4.37
57 58 2.300996 GAGGAGCTGGTCATCCCAA 58.699 57.895 10.15 0.00 44.65 4.12
58 59 0.620556 GAGGAGCTGGTCATCCCAAA 59.379 55.000 10.15 0.00 44.65 3.28
59 60 0.622665 AGGAGCTGGTCATCCCAAAG 59.377 55.000 9.30 0.00 44.65 2.77
60 61 1.034292 GGAGCTGGTCATCCCAAAGC 61.034 60.000 9.30 0.00 44.65 3.51
61 62 0.322816 GAGCTGGTCATCCCAAAGCA 60.323 55.000 1.28 0.00 44.65 3.91
62 63 0.333993 AGCTGGTCATCCCAAAGCAT 59.666 50.000 0.00 0.00 44.65 3.79
63 64 0.458669 GCTGGTCATCCCAAAGCATG 59.541 55.000 0.00 0.00 44.65 4.06
64 65 1.956636 GCTGGTCATCCCAAAGCATGA 60.957 52.381 0.00 0.00 44.65 3.07
65 66 2.022195 CTGGTCATCCCAAAGCATGAG 58.978 52.381 0.00 0.00 44.65 2.90
66 67 1.341285 TGGTCATCCCAAAGCATGAGG 60.341 52.381 0.00 0.00 41.50 3.86
67 68 1.064463 GGTCATCCCAAAGCATGAGGA 60.064 52.381 0.00 0.00 34.28 3.71
68 69 2.423947 GGTCATCCCAAAGCATGAGGAT 60.424 50.000 0.00 0.00 38.74 3.24
69 70 3.181440 GGTCATCCCAAAGCATGAGGATA 60.181 47.826 0.00 0.00 37.14 2.59
70 71 3.817647 GTCATCCCAAAGCATGAGGATAC 59.182 47.826 0.00 7.40 37.14 2.24
71 72 3.152341 CATCCCAAAGCATGAGGATACC 58.848 50.000 0.00 0.00 37.14 2.73
72 73 2.204463 TCCCAAAGCATGAGGATACCA 58.796 47.619 0.00 0.00 37.17 3.25
73 74 2.092429 TCCCAAAGCATGAGGATACCAC 60.092 50.000 0.00 0.00 37.17 4.16
74 75 2.301346 CCAAAGCATGAGGATACCACC 58.699 52.381 0.00 0.00 37.17 4.61
75 76 2.092212 CCAAAGCATGAGGATACCACCT 60.092 50.000 0.00 0.00 43.64 4.00
84 85 2.946785 AGGATACCACCTCTAGTTCCG 58.053 52.381 0.00 0.00 34.98 4.30
85 86 2.512896 AGGATACCACCTCTAGTTCCGA 59.487 50.000 0.00 0.00 34.98 4.55
86 87 3.140519 AGGATACCACCTCTAGTTCCGAT 59.859 47.826 0.00 0.00 34.98 4.18
87 88 3.506844 GGATACCACCTCTAGTTCCGATC 59.493 52.174 0.00 0.00 0.00 3.69
88 89 1.390565 ACCACCTCTAGTTCCGATCG 58.609 55.000 8.51 8.51 0.00 3.69
89 90 0.030908 CCACCTCTAGTTCCGATCGC 59.969 60.000 10.32 0.00 0.00 4.58
90 91 0.030908 CACCTCTAGTTCCGATCGCC 59.969 60.000 10.32 0.00 0.00 5.54
91 92 1.283181 CCTCTAGTTCCGATCGCCG 59.717 63.158 10.32 0.00 38.18 6.46
100 101 3.264897 CGATCGCCGGCCTTTGAG 61.265 66.667 23.46 5.48 33.91 3.02
101 102 3.577313 GATCGCCGGCCTTTGAGC 61.577 66.667 23.46 11.59 0.00 4.26
102 103 4.408821 ATCGCCGGCCTTTGAGCA 62.409 61.111 23.46 0.00 0.00 4.26
103 104 3.918253 ATCGCCGGCCTTTGAGCAA 62.918 57.895 23.46 0.00 0.00 3.91
104 105 3.669344 CGCCGGCCTTTGAGCAAA 61.669 61.111 23.46 0.00 0.00 3.68
105 106 2.733945 GCCGGCCTTTGAGCAAAA 59.266 55.556 18.11 0.00 0.00 2.44
106 107 1.664649 GCCGGCCTTTGAGCAAAAC 60.665 57.895 18.11 0.00 0.00 2.43
107 108 2.041153 CCGGCCTTTGAGCAAAACT 58.959 52.632 0.00 0.00 0.00 2.66
108 109 1.243902 CCGGCCTTTGAGCAAAACTA 58.756 50.000 0.00 0.00 0.00 2.24
109 110 1.068541 CCGGCCTTTGAGCAAAACTAC 60.069 52.381 0.00 0.00 0.00 2.73
110 111 1.880027 CGGCCTTTGAGCAAAACTACT 59.120 47.619 0.00 0.00 0.00 2.57
111 112 2.293399 CGGCCTTTGAGCAAAACTACTT 59.707 45.455 0.00 0.00 0.00 2.24
112 113 3.500680 CGGCCTTTGAGCAAAACTACTTA 59.499 43.478 0.00 0.00 0.00 2.24
113 114 4.378459 CGGCCTTTGAGCAAAACTACTTAG 60.378 45.833 0.00 0.00 0.00 2.18
114 115 4.519350 GGCCTTTGAGCAAAACTACTTAGT 59.481 41.667 0.00 0.00 38.39 2.24
115 116 5.334957 GGCCTTTGAGCAAAACTACTTAGTC 60.335 44.000 0.00 0.00 34.99 2.59
116 117 5.470437 GCCTTTGAGCAAAACTACTTAGTCT 59.530 40.000 0.00 0.00 34.99 3.24
117 118 6.649557 GCCTTTGAGCAAAACTACTTAGTCTA 59.350 38.462 0.00 0.00 34.99 2.59
118 119 7.360185 GCCTTTGAGCAAAACTACTTAGTCTAC 60.360 40.741 0.00 0.00 34.99 2.59
119 120 7.117956 CCTTTGAGCAAAACTACTTAGTCTACC 59.882 40.741 0.00 0.00 34.99 3.18
120 121 6.034161 TGAGCAAAACTACTTAGTCTACCC 57.966 41.667 0.00 0.00 34.99 3.69
121 122 5.046807 TGAGCAAAACTACTTAGTCTACCCC 60.047 44.000 0.00 0.00 34.99 4.95
122 123 4.224594 AGCAAAACTACTTAGTCTACCCCC 59.775 45.833 0.00 0.00 34.99 5.40
123 124 4.224594 GCAAAACTACTTAGTCTACCCCCT 59.775 45.833 0.00 0.00 34.99 4.79
124 125 5.626347 GCAAAACTACTTAGTCTACCCCCTC 60.626 48.000 0.00 0.00 34.99 4.30
125 126 3.969466 ACTACTTAGTCTACCCCCTCC 57.031 52.381 0.00 0.00 0.00 4.30
126 127 2.517553 ACTACTTAGTCTACCCCCTCCC 59.482 54.545 0.00 0.00 0.00 4.30
127 128 1.400941 ACTTAGTCTACCCCCTCCCA 58.599 55.000 0.00 0.00 0.00 4.37
128 129 1.291335 ACTTAGTCTACCCCCTCCCAG 59.709 57.143 0.00 0.00 0.00 4.45
129 130 0.640495 TTAGTCTACCCCCTCCCAGG 59.360 60.000 0.00 0.00 34.30 4.45
130 131 0.254444 TAGTCTACCCCCTCCCAGGA 60.254 60.000 0.00 0.00 37.67 3.86
131 132 1.160289 AGTCTACCCCCTCCCAGGAA 61.160 60.000 0.00 0.00 37.67 3.36
132 133 0.981801 GTCTACCCCCTCCCAGGAAC 60.982 65.000 0.00 0.00 37.67 3.62
133 134 1.693103 CTACCCCCTCCCAGGAACC 60.693 68.421 0.00 0.00 37.67 3.62
134 135 2.188947 TACCCCCTCCCAGGAACCT 61.189 63.158 0.00 0.00 37.67 3.50
135 136 0.861364 TACCCCCTCCCAGGAACCTA 60.861 60.000 0.00 0.00 37.67 3.08
136 137 1.384643 CCCCCTCCCAGGAACCTAG 60.385 68.421 0.00 0.00 37.67 3.02
137 138 2.073101 CCCCTCCCAGGAACCTAGC 61.073 68.421 0.00 0.00 37.67 3.42
138 139 2.435693 CCCTCCCAGGAACCTAGCG 61.436 68.421 0.00 0.00 37.67 4.26
139 140 2.435693 CCTCCCAGGAACCTAGCGG 61.436 68.421 0.00 0.00 37.67 5.52
141 142 1.961180 CTCCCAGGAACCTAGCGGTG 61.961 65.000 0.00 0.00 44.73 4.94
142 143 1.987855 CCCAGGAACCTAGCGGTGA 60.988 63.158 0.00 0.00 44.73 4.02
143 144 1.550130 CCCAGGAACCTAGCGGTGAA 61.550 60.000 0.00 0.00 44.73 3.18
144 145 0.108138 CCAGGAACCTAGCGGTGAAG 60.108 60.000 0.00 0.00 44.73 3.02
145 146 0.108138 CAGGAACCTAGCGGTGAAGG 60.108 60.000 0.00 0.00 44.73 3.46
146 147 1.221021 GGAACCTAGCGGTGAAGGG 59.779 63.158 8.25 2.86 44.73 3.95
147 148 1.262640 GGAACCTAGCGGTGAAGGGA 61.263 60.000 8.25 0.00 44.73 4.20
148 149 0.831307 GAACCTAGCGGTGAAGGGAT 59.169 55.000 8.25 0.00 44.73 3.85
149 150 0.831307 AACCTAGCGGTGAAGGGATC 59.169 55.000 8.25 0.00 44.73 3.36
150 151 0.325296 ACCTAGCGGTGAAGGGATCA 60.325 55.000 8.25 0.00 43.51 2.92
151 152 0.830648 CCTAGCGGTGAAGGGATCAA 59.169 55.000 0.00 0.00 40.50 2.57
152 153 1.417890 CCTAGCGGTGAAGGGATCAAT 59.582 52.381 0.00 0.00 40.50 2.57
153 154 2.632996 CCTAGCGGTGAAGGGATCAATA 59.367 50.000 0.00 0.00 40.50 1.90
154 155 3.261897 CCTAGCGGTGAAGGGATCAATAT 59.738 47.826 0.00 0.00 40.50 1.28
155 156 3.864789 AGCGGTGAAGGGATCAATATT 57.135 42.857 0.00 0.00 40.50 1.28
156 157 3.480470 AGCGGTGAAGGGATCAATATTG 58.520 45.455 9.29 9.29 40.50 1.90
157 158 3.117888 AGCGGTGAAGGGATCAATATTGT 60.118 43.478 14.97 3.05 40.50 2.71
158 159 3.251004 GCGGTGAAGGGATCAATATTGTC 59.749 47.826 14.97 11.30 40.50 3.18
159 160 3.494626 CGGTGAAGGGATCAATATTGTCG 59.505 47.826 14.97 2.55 40.50 4.35
160 161 4.703897 GGTGAAGGGATCAATATTGTCGA 58.296 43.478 14.97 0.00 40.50 4.20
161 162 4.752101 GGTGAAGGGATCAATATTGTCGAG 59.248 45.833 14.97 0.00 40.50 4.04
162 163 4.212214 GTGAAGGGATCAATATTGTCGAGC 59.788 45.833 14.97 0.00 40.50 5.03
163 164 4.101585 TGAAGGGATCAATATTGTCGAGCT 59.898 41.667 14.97 0.00 34.30 4.09
164 165 4.696479 AGGGATCAATATTGTCGAGCTT 57.304 40.909 14.97 0.00 0.00 3.74
165 166 4.636249 AGGGATCAATATTGTCGAGCTTC 58.364 43.478 14.97 3.15 0.00 3.86
166 167 3.430218 GGGATCAATATTGTCGAGCTTCG 59.570 47.826 14.97 0.00 42.10 3.79
167 168 4.051922 GGATCAATATTGTCGAGCTTCGT 58.948 43.478 14.97 0.00 41.35 3.85
168 169 4.508124 GGATCAATATTGTCGAGCTTCGTT 59.492 41.667 14.97 0.00 41.35 3.85
169 170 5.006746 GGATCAATATTGTCGAGCTTCGTTT 59.993 40.000 14.97 0.00 41.35 3.60
170 171 5.450376 TCAATATTGTCGAGCTTCGTTTC 57.550 39.130 14.97 0.00 41.35 2.78
171 172 5.168569 TCAATATTGTCGAGCTTCGTTTCT 58.831 37.500 14.97 0.00 41.35 2.52
172 173 5.637810 TCAATATTGTCGAGCTTCGTTTCTT 59.362 36.000 14.97 0.00 41.35 2.52
173 174 3.795561 ATTGTCGAGCTTCGTTTCTTG 57.204 42.857 0.00 0.00 41.35 3.02
174 175 2.502213 TGTCGAGCTTCGTTTCTTGA 57.498 45.000 0.00 0.00 41.35 3.02
175 176 2.816689 TGTCGAGCTTCGTTTCTTGAA 58.183 42.857 0.00 0.00 41.35 2.69
176 177 3.390135 TGTCGAGCTTCGTTTCTTGAAT 58.610 40.909 0.00 0.00 41.35 2.57
177 178 3.184379 TGTCGAGCTTCGTTTCTTGAATG 59.816 43.478 0.00 0.00 41.35 2.67
178 179 2.157668 TCGAGCTTCGTTTCTTGAATGC 59.842 45.455 0.00 0.00 41.35 3.56
179 180 2.096268 CGAGCTTCGTTTCTTGAATGCA 60.096 45.455 0.00 0.00 34.72 3.96
180 181 3.229552 GAGCTTCGTTTCTTGAATGCAC 58.770 45.455 0.00 0.00 0.00 4.57
181 182 2.618241 AGCTTCGTTTCTTGAATGCACA 59.382 40.909 0.00 0.00 0.00 4.57
182 183 2.721090 GCTTCGTTTCTTGAATGCACAC 59.279 45.455 0.00 0.00 0.00 3.82
183 184 2.661504 TCGTTTCTTGAATGCACACG 57.338 45.000 0.00 0.00 0.00 4.49
184 185 2.205911 TCGTTTCTTGAATGCACACGA 58.794 42.857 0.00 3.95 0.00 4.35
185 186 2.805671 TCGTTTCTTGAATGCACACGAT 59.194 40.909 0.00 0.00 0.00 3.73
186 187 3.120683 TCGTTTCTTGAATGCACACGATC 60.121 43.478 0.00 0.00 0.00 3.69
187 188 3.120546 CGTTTCTTGAATGCACACGATCT 60.121 43.478 0.00 0.00 0.00 2.75
188 189 4.153986 GTTTCTTGAATGCACACGATCTG 58.846 43.478 0.00 0.00 0.00 2.90
189 190 3.317603 TCTTGAATGCACACGATCTGA 57.682 42.857 0.00 0.00 0.00 3.27
190 191 2.995939 TCTTGAATGCACACGATCTGAC 59.004 45.455 0.00 0.00 0.00 3.51
191 192 2.453983 TGAATGCACACGATCTGACA 57.546 45.000 0.00 0.00 0.00 3.58
192 193 2.976589 TGAATGCACACGATCTGACAT 58.023 42.857 0.00 0.00 0.00 3.06
193 194 2.674357 TGAATGCACACGATCTGACATG 59.326 45.455 0.00 0.00 0.00 3.21
194 195 2.678471 ATGCACACGATCTGACATGA 57.322 45.000 0.00 0.00 0.00 3.07
195 196 2.453983 TGCACACGATCTGACATGAA 57.546 45.000 0.00 0.00 0.00 2.57
196 197 2.340337 TGCACACGATCTGACATGAAG 58.660 47.619 0.00 0.00 0.00 3.02
197 198 2.029110 TGCACACGATCTGACATGAAGA 60.029 45.455 0.00 2.14 0.00 2.87
198 199 2.602211 GCACACGATCTGACATGAAGAG 59.398 50.000 0.00 0.00 0.00 2.85
199 200 3.185330 CACACGATCTGACATGAAGAGG 58.815 50.000 0.00 1.60 0.00 3.69
200 201 2.200067 CACGATCTGACATGAAGAGGC 58.800 52.381 0.00 0.00 0.00 4.70
201 202 1.827344 ACGATCTGACATGAAGAGGCA 59.173 47.619 0.00 0.00 0.00 4.75
202 203 2.159128 ACGATCTGACATGAAGAGGCAG 60.159 50.000 0.00 0.00 0.00 4.85
203 204 2.159128 CGATCTGACATGAAGAGGCAGT 60.159 50.000 0.00 0.00 0.00 4.40
204 205 2.756840 TCTGACATGAAGAGGCAGTG 57.243 50.000 0.00 0.00 0.00 3.66
205 206 2.250924 TCTGACATGAAGAGGCAGTGA 58.749 47.619 0.00 0.00 0.00 3.41
206 207 2.836372 TCTGACATGAAGAGGCAGTGAT 59.164 45.455 0.00 0.00 0.00 3.06
207 208 3.118847 TCTGACATGAAGAGGCAGTGATC 60.119 47.826 0.00 0.00 0.00 2.92
208 209 2.200067 GACATGAAGAGGCAGTGATCG 58.800 52.381 0.00 0.00 0.00 3.69
209 210 1.552337 ACATGAAGAGGCAGTGATCGT 59.448 47.619 0.00 0.00 0.00 3.73
210 211 2.027745 ACATGAAGAGGCAGTGATCGTT 60.028 45.455 0.00 0.00 0.00 3.85
211 212 2.839486 TGAAGAGGCAGTGATCGTTT 57.161 45.000 0.00 0.00 0.00 3.60
212 213 2.688507 TGAAGAGGCAGTGATCGTTTC 58.311 47.619 0.00 0.00 0.00 2.78
213 214 2.037121 TGAAGAGGCAGTGATCGTTTCA 59.963 45.455 0.00 0.00 0.00 2.69
214 215 3.265791 GAAGAGGCAGTGATCGTTTCAT 58.734 45.455 0.00 0.00 36.54 2.57
215 216 3.340814 AGAGGCAGTGATCGTTTCATT 57.659 42.857 0.00 0.00 36.54 2.57
216 217 3.005554 AGAGGCAGTGATCGTTTCATTG 58.994 45.455 0.00 8.49 43.12 2.82
217 218 3.002791 GAGGCAGTGATCGTTTCATTGA 58.997 45.455 14.38 0.00 42.95 2.57
218 219 3.122937 GGCAGTGATCGTTTCATTGAC 57.877 47.619 14.38 9.66 42.95 3.18
219 220 2.483877 GGCAGTGATCGTTTCATTGACA 59.516 45.455 14.38 0.00 46.61 3.58
220 221 3.425359 GGCAGTGATCGTTTCATTGACAG 60.425 47.826 14.38 0.00 46.61 3.51
221 222 3.187227 GCAGTGATCGTTTCATTGACAGT 59.813 43.478 14.38 0.00 42.95 3.55
222 223 4.388773 GCAGTGATCGTTTCATTGACAGTA 59.611 41.667 14.38 0.00 42.95 2.74
223 224 5.445142 GCAGTGATCGTTTCATTGACAGTAG 60.445 44.000 14.38 0.00 42.95 2.57
224 225 4.627467 AGTGATCGTTTCATTGACAGTAGC 59.373 41.667 0.00 0.00 36.54 3.58
225 226 4.388773 GTGATCGTTTCATTGACAGTAGCA 59.611 41.667 0.00 0.00 36.54 3.49
226 227 4.388773 TGATCGTTTCATTGACAGTAGCAC 59.611 41.667 0.00 0.00 0.00 4.40
227 228 2.729360 TCGTTTCATTGACAGTAGCACG 59.271 45.455 0.00 0.00 0.00 5.34
228 229 2.475111 CGTTTCATTGACAGTAGCACGT 59.525 45.455 0.00 0.00 0.00 4.49
229 230 3.421826 CGTTTCATTGACAGTAGCACGTC 60.422 47.826 0.00 0.00 0.00 4.34
230 231 1.977188 TCATTGACAGTAGCACGTCG 58.023 50.000 0.00 0.00 34.78 5.12
231 232 0.366871 CATTGACAGTAGCACGTCGC 59.633 55.000 0.00 2.28 42.91 5.19
241 242 4.988598 CACGTCGCTTGGGGCAGT 62.989 66.667 0.00 0.00 41.91 4.40
242 243 4.250305 ACGTCGCTTGGGGCAGTT 62.250 61.111 0.00 0.00 41.91 3.16
243 244 3.726517 CGTCGCTTGGGGCAGTTG 61.727 66.667 0.00 0.00 41.91 3.16
244 245 2.281484 GTCGCTTGGGGCAGTTGA 60.281 61.111 0.00 0.00 41.91 3.18
245 246 2.032528 TCGCTTGGGGCAGTTGAG 59.967 61.111 0.00 0.00 41.91 3.02
246 247 2.032528 CGCTTGGGGCAGTTGAGA 59.967 61.111 0.00 0.00 41.91 3.27
247 248 2.328099 CGCTTGGGGCAGTTGAGAC 61.328 63.158 0.00 0.00 41.91 3.36
248 249 1.973812 GCTTGGGGCAGTTGAGACC 60.974 63.158 0.00 0.00 41.35 3.85
249 250 1.763770 CTTGGGGCAGTTGAGACCT 59.236 57.895 0.00 0.00 0.00 3.85
250 251 0.322008 CTTGGGGCAGTTGAGACCTC 60.322 60.000 0.00 0.00 0.00 3.85
251 252 0.768221 TTGGGGCAGTTGAGACCTCT 60.768 55.000 0.00 0.00 0.00 3.69
252 253 0.768221 TGGGGCAGTTGAGACCTCTT 60.768 55.000 0.00 0.00 0.00 2.85
253 254 1.276622 GGGGCAGTTGAGACCTCTTA 58.723 55.000 0.00 0.00 0.00 2.10
254 255 1.066071 GGGGCAGTTGAGACCTCTTAC 60.066 57.143 0.00 0.00 0.00 2.34
265 266 5.978814 TGAGACCTCTTACAGATTTAAGCC 58.021 41.667 0.00 0.00 0.00 4.35
331 332 4.736126 TGAATTCGTTAGGAGCTGATGA 57.264 40.909 0.00 0.00 0.00 2.92
343 344 0.179000 GCTGATGATCCTTCACGGGT 59.821 55.000 0.00 0.00 33.85 5.28
346 1924 1.207089 TGATGATCCTTCACGGGTGTC 59.793 52.381 0.00 0.00 33.85 3.67
471 2052 3.690460 CCCTATCTTATGGGCATGTTCC 58.310 50.000 0.00 0.00 36.61 3.62
474 2055 4.520492 CCTATCTTATGGGCATGTTCCAAC 59.480 45.833 12.66 0.00 37.87 3.77
519 2101 7.511959 AAAACTAATTGGTCAACTCTCTTCC 57.488 36.000 0.00 0.00 0.00 3.46
526 2108 4.899502 TGGTCAACTCTCTTCCATCTTTC 58.100 43.478 0.00 0.00 0.00 2.62
563 2148 3.291585 CTGAGTCACATGCGTCAAAAAC 58.708 45.455 0.00 0.00 0.00 2.43
568 2156 4.926238 AGTCACATGCGTCAAAAACAAAAA 59.074 33.333 0.00 0.00 0.00 1.94
689 2308 5.886960 TTTGAATCAAAGAGGCTCTAAGC 57.113 39.130 19.07 5.24 41.46 3.09
707 2326 3.375782 AGCTTTCATGTGCCTTGAAAC 57.624 42.857 10.26 8.60 37.97 2.78
710 2329 4.060205 GCTTTCATGTGCCTTGAAACAAT 58.940 39.130 10.26 0.00 37.97 2.71
718 2337 9.368674 TCATGTGCCTTGAAACAATATATTTTG 57.631 29.630 4.55 4.55 0.00 2.44
727 2347 8.770438 TGAAACAATATATTTTGTTGAAGCCC 57.230 30.769 20.47 9.62 46.33 5.19
757 2377 9.897744 ACAATTGTTCTACAGTATTTTCATGTG 57.102 29.630 4.92 0.00 0.00 3.21
770 2390 4.952071 TTTCATGTGCCTTGAAATGGAA 57.048 36.364 10.26 0.00 37.97 3.53
927 2547 0.107831 TAGGTTTTGCAGACGTGGCT 59.892 50.000 9.86 0.00 0.00 4.75
948 2571 2.865603 CTGCTGTCGTCGTCGTCG 60.866 66.667 5.50 5.50 38.33 5.12
949 2572 3.575020 CTGCTGTCGTCGTCGTCGT 62.575 63.158 11.41 0.00 38.33 4.34
1017 2640 1.153208 GATGGACTCCTGCCTGCTG 60.153 63.158 0.00 0.00 0.00 4.41
1092 2715 2.444696 CACCTCAAATGGGCCCCA 59.555 61.111 22.27 4.05 38.19 4.96
1153 2776 1.516603 GTCTCCGCGCTCACCTTAC 60.517 63.158 5.56 0.00 0.00 2.34
1161 2784 1.876416 GCGCTCACCTTACAGGAACAA 60.876 52.381 0.00 0.00 37.67 2.83
1181 2804 4.639171 CGCGCCAACCAACCCAAC 62.639 66.667 0.00 0.00 0.00 3.77
1186 2809 1.334384 GCCAACCAACCCAACAACCT 61.334 55.000 0.00 0.00 0.00 3.50
1187 2810 0.750249 CCAACCAACCCAACAACCTC 59.250 55.000 0.00 0.00 0.00 3.85
1188 2811 0.750249 CAACCAACCCAACAACCTCC 59.250 55.000 0.00 0.00 0.00 4.30
1189 2812 0.753848 AACCAACCCAACAACCTCCG 60.754 55.000 0.00 0.00 0.00 4.63
1190 2813 1.149627 CCAACCCAACAACCTCCGA 59.850 57.895 0.00 0.00 0.00 4.55
1191 2814 0.889186 CCAACCCAACAACCTCCGAG 60.889 60.000 0.00 0.00 0.00 4.63
1192 2815 0.107831 CAACCCAACAACCTCCGAGA 59.892 55.000 0.00 0.00 0.00 4.04
1193 2816 0.396811 AACCCAACAACCTCCGAGAG 59.603 55.000 0.00 0.00 0.00 3.20
1194 2817 0.471211 ACCCAACAACCTCCGAGAGA 60.471 55.000 0.00 0.00 0.00 3.10
1195 2818 0.037232 CCCAACAACCTCCGAGAGAC 60.037 60.000 0.00 0.00 0.00 3.36
1196 2819 0.037232 CCAACAACCTCCGAGAGACC 60.037 60.000 0.00 0.00 0.00 3.85
1197 2820 0.388649 CAACAACCTCCGAGAGACCG 60.389 60.000 0.00 0.00 0.00 4.79
1198 2821 0.538977 AACAACCTCCGAGAGACCGA 60.539 55.000 0.00 0.00 0.00 4.69
1199 2822 0.538977 ACAACCTCCGAGAGACCGAA 60.539 55.000 0.00 0.00 0.00 4.30
1320 2943 4.409218 GCGAGCGTACGTGGTCCA 62.409 66.667 17.90 0.00 32.83 4.02
1323 2946 2.599578 AGCGTACGTGGTCCACCT 60.600 61.111 17.90 7.58 36.82 4.00
1469 3107 1.743252 CCAGCGTCCTCAAAGCCTC 60.743 63.158 0.00 0.00 32.07 4.70
1470 3108 1.294780 CAGCGTCCTCAAAGCCTCT 59.705 57.895 0.00 0.00 32.07 3.69
1548 3186 2.393768 CCTGTGCCAGCATGTCGTC 61.394 63.158 0.00 0.00 0.00 4.20
1578 3216 2.430244 CTGGTCAGCGCGTACGTT 60.430 61.111 17.90 0.00 42.83 3.99
1700 3338 4.489771 GTGGGACGAGGCATGGGG 62.490 72.222 0.00 0.00 0.00 4.96
1746 3384 1.377202 GGTGCTTCCGGCTGATTCA 60.377 57.895 0.00 0.00 42.39 2.57
1761 3399 3.753815 TGATTCAGTTCTTGTGATGGCA 58.246 40.909 0.00 0.00 0.00 4.92
1797 3435 1.299089 GTTGTTGTGCCTGGTTCGC 60.299 57.895 0.00 0.00 0.00 4.70
1838 3476 2.513897 GGTCGCCCTCGGATTTGG 60.514 66.667 0.00 0.00 36.13 3.28
1920 3558 1.410153 AGTTGCAGGGCAGTTTTTGAG 59.590 47.619 0.00 0.00 40.61 3.02
1986 3624 4.451096 TCAAGCTATGTTCGTCTTGGTTTC 59.549 41.667 0.00 0.00 37.21 2.78
1998 3636 2.172505 TCTTGGTTTCTGTGAAGAGGCA 59.827 45.455 0.00 0.00 0.00 4.75
2035 3673 2.029739 CAGATGCAGCAATGTGGTTTCA 60.030 45.455 4.07 0.00 0.00 2.69
2037 3675 0.388659 TGCAGCAATGTGGTTTCACC 59.611 50.000 0.00 0.00 42.98 4.02
2118 3756 1.077086 TGGCAGTGCATTCCATGGT 59.923 52.632 18.61 0.00 0.00 3.55
2212 3850 1.945394 GTTTGATGGAGCATGCTCGAT 59.055 47.619 36.24 36.24 42.71 3.59
2292 3930 0.958822 ACGTTGAAAATGGGCAGGTC 59.041 50.000 0.00 0.00 37.08 3.85
2349 3987 4.458989 TCTGCAAACATAAAGCCTAACCAG 59.541 41.667 0.00 0.00 0.00 4.00
2415 4053 6.651225 GGTATACAGAGTATGGAAGGCAAATC 59.349 42.308 5.01 0.00 0.00 2.17
2454 4092 2.620115 GGCCATACACCAGATGAATGTG 59.380 50.000 0.00 0.00 36.11 3.21
2493 4131 2.143008 TCGACATGTACGCAAAGTGT 57.857 45.000 0.00 0.00 0.00 3.55
2515 4153 4.133796 GCATTGAGGTTGCCCGGC 62.134 66.667 1.04 1.04 33.95 6.13
2526 4164 1.774894 TTGCCCGGCTACTGTTCCTT 61.775 55.000 11.61 0.00 0.00 3.36
2571 4209 0.967887 CCTGGAACGCTCTCCTCTCA 60.968 60.000 0.00 0.00 36.35 3.27
2622 4260 3.062369 CGTCGATAAACATTTACCGCCAA 59.938 43.478 0.00 0.00 29.83 4.52
2652 4290 1.451567 CTGCATCAGGCCTGACCAG 60.452 63.158 37.39 35.06 43.11 4.00
2751 4389 5.893824 TGTCATTAAGATAGGCTCTGAGACA 59.106 40.000 14.01 0.00 33.29 3.41
2811 4449 1.517832 GTGTAGGCAGTGGCGAGAT 59.482 57.895 11.51 0.00 42.47 2.75
2857 4495 6.433847 TCCAAGAGAGGAACTTTTATGTGA 57.566 37.500 0.00 0.00 41.55 3.58
2895 4533 4.484912 AGGTCTATGGAGATGGGTACTTC 58.515 47.826 0.00 0.00 33.14 3.01
2919 4557 7.046652 TCATCTGAAGAGAAGAAACATGATCC 58.953 38.462 0.00 0.00 0.00 3.36
2920 4558 6.617782 TCTGAAGAGAAGAAACATGATCCT 57.382 37.500 0.00 0.00 0.00 3.24
2955 4597 4.816925 AGAAGATAAATGCTTCGGGCTAAC 59.183 41.667 0.00 0.00 44.88 2.34
2956 4598 3.131396 AGATAAATGCTTCGGGCTAACG 58.869 45.455 3.33 0.00 42.39 3.18
3070 4713 3.673323 GCTTCGACCCATGAAAACCAATC 60.673 47.826 0.00 0.00 0.00 2.67
3096 4739 0.394899 AAGGATAGTTGGGCAGCTGC 60.395 55.000 30.88 30.88 41.14 5.25
3198 4841 2.223923 TGTTGTGGTGCCTGTAAAATGC 60.224 45.455 0.00 0.00 0.00 3.56
3206 4849 3.184986 GTGCCTGTAAAATGCAAGCAAAG 59.815 43.478 0.00 0.00 35.42 2.77
3209 4852 2.738314 CTGTAAAATGCAAGCAAAGGGC 59.262 45.455 0.00 0.00 45.30 5.19
3231 4874 4.024302 GCCTGGTAGTTTTGTAGTGTTGTC 60.024 45.833 0.00 0.00 0.00 3.18
3245 4888 5.864418 AGTGTTGTCTACCACTGACTTTA 57.136 39.130 0.00 0.00 35.63 1.85
3274 4917 0.037790 GCTCACACAGGGTCTCTCAC 60.038 60.000 0.00 0.00 0.00 3.51
3283 4926 2.304180 CAGGGTCTCTCACTGGTCATTT 59.696 50.000 0.00 0.00 43.35 2.32
3284 4927 3.515502 CAGGGTCTCTCACTGGTCATTTA 59.484 47.826 0.00 0.00 43.35 1.40
3306 4949 1.098050 GCAGCCTCATTGTACCTTGG 58.902 55.000 0.00 0.00 0.00 3.61
3337 5035 4.227300 TCTTGTAATAGTCAGGGGCAATGT 59.773 41.667 0.00 0.00 0.00 2.71
3346 5044 0.842030 AGGGGCAATGTGGAGTGAGA 60.842 55.000 0.00 0.00 0.00 3.27
3372 5070 3.523547 CTCAGCTCACAATTCTCTGAGG 58.476 50.000 4.59 0.00 44.10 3.86
3480 5205 9.672086 TGCTTATAAATTGTTGTGTTTACTGTC 57.328 29.630 0.00 0.00 0.00 3.51
3481 5206 9.672086 GCTTATAAATTGTTGTGTTTACTGTCA 57.328 29.630 0.00 0.00 0.00 3.58
3498 5223 4.037565 ACTGTCAATCTGTCGTGTGTCTTA 59.962 41.667 0.00 0.00 0.00 2.10
3610 5352 7.587757 CAGCTGTAGAAAATGACTTGTAAACAC 59.412 37.037 5.25 0.00 0.00 3.32
3612 5354 8.076178 GCTGTAGAAAATGACTTGTAAACACAT 58.924 33.333 0.00 0.00 0.00 3.21
3625 5367 5.245531 TGTAAACACATTCATCTCCAGACC 58.754 41.667 0.00 0.00 0.00 3.85
3627 5369 1.208052 ACACATTCATCTCCAGACCCG 59.792 52.381 0.00 0.00 0.00 5.28
3638 5380 3.517901 TCTCCAGACCCGTGTCATAAAAT 59.482 43.478 0.00 0.00 44.33 1.82
3639 5381 3.605634 TCCAGACCCGTGTCATAAAATG 58.394 45.455 0.00 0.00 44.33 2.32
3640 5382 3.008594 TCCAGACCCGTGTCATAAAATGT 59.991 43.478 0.00 0.00 44.33 2.71
3677 5421 3.681897 CAGCTGCTTCTACGATTTCTGTT 59.318 43.478 0.00 0.00 0.00 3.16
3781 5530 6.276832 ACGTTAAGCTATTCTGTGACCTTA 57.723 37.500 0.00 0.00 0.00 2.69
3783 5532 8.004087 ACGTTAAGCTATTCTGTGACCTTATA 57.996 34.615 0.00 0.00 0.00 0.98
3784 5533 7.919621 ACGTTAAGCTATTCTGTGACCTTATAC 59.080 37.037 0.00 0.00 0.00 1.47
3785 5534 7.919091 CGTTAAGCTATTCTGTGACCTTATACA 59.081 37.037 0.00 0.00 0.00 2.29
3786 5535 9.250624 GTTAAGCTATTCTGTGACCTTATACAG 57.749 37.037 0.00 0.00 44.31 2.74
3793 5542 5.786401 CTGTGACCTTATACAGAAAGCAC 57.214 43.478 0.00 0.00 45.46 4.40
3794 5543 5.222079 TGTGACCTTATACAGAAAGCACA 57.778 39.130 0.00 0.00 29.88 4.57
3795 5544 5.616270 TGTGACCTTATACAGAAAGCACAA 58.384 37.500 0.00 0.00 29.63 3.33
3796 5545 5.468746 TGTGACCTTATACAGAAAGCACAAC 59.531 40.000 0.00 0.00 29.63 3.32
3797 5546 5.001232 TGACCTTATACAGAAAGCACAACC 58.999 41.667 0.00 0.00 0.00 3.77
3798 5547 4.980573 ACCTTATACAGAAAGCACAACCA 58.019 39.130 0.00 0.00 0.00 3.67
3799 5548 5.381757 ACCTTATACAGAAAGCACAACCAA 58.618 37.500 0.00 0.00 0.00 3.67
3800 5549 6.010219 ACCTTATACAGAAAGCACAACCAAT 58.990 36.000 0.00 0.00 0.00 3.16
3801 5550 6.151144 ACCTTATACAGAAAGCACAACCAATC 59.849 38.462 0.00 0.00 0.00 2.67
3802 5551 6.404734 CCTTATACAGAAAGCACAACCAATCC 60.405 42.308 0.00 0.00 0.00 3.01
3803 5552 2.949447 ACAGAAAGCACAACCAATCCT 58.051 42.857 0.00 0.00 0.00 3.24
3804 5553 2.887152 ACAGAAAGCACAACCAATCCTC 59.113 45.455 0.00 0.00 0.00 3.71
3805 5554 2.886523 CAGAAAGCACAACCAATCCTCA 59.113 45.455 0.00 0.00 0.00 3.86
3806 5555 2.887152 AGAAAGCACAACCAATCCTCAC 59.113 45.455 0.00 0.00 0.00 3.51
3807 5556 2.363306 AAGCACAACCAATCCTCACA 57.637 45.000 0.00 0.00 0.00 3.58
3808 5557 2.363306 AGCACAACCAATCCTCACAA 57.637 45.000 0.00 0.00 0.00 3.33
3809 5558 2.665165 AGCACAACCAATCCTCACAAA 58.335 42.857 0.00 0.00 0.00 2.83
3810 5559 3.030291 AGCACAACCAATCCTCACAAAA 58.970 40.909 0.00 0.00 0.00 2.44
3811 5560 3.123050 GCACAACCAATCCTCACAAAAC 58.877 45.455 0.00 0.00 0.00 2.43
3812 5561 3.181476 GCACAACCAATCCTCACAAAACT 60.181 43.478 0.00 0.00 0.00 2.66
3813 5562 4.610945 CACAACCAATCCTCACAAAACTC 58.389 43.478 0.00 0.00 0.00 3.01
3814 5563 3.636764 ACAACCAATCCTCACAAAACTCC 59.363 43.478 0.00 0.00 0.00 3.85
3815 5564 2.876581 ACCAATCCTCACAAAACTCCC 58.123 47.619 0.00 0.00 0.00 4.30
3816 5565 2.171003 CCAATCCTCACAAAACTCCCC 58.829 52.381 0.00 0.00 0.00 4.81
3817 5566 2.490718 CCAATCCTCACAAAACTCCCCA 60.491 50.000 0.00 0.00 0.00 4.96
3818 5567 3.434309 CAATCCTCACAAAACTCCCCAT 58.566 45.455 0.00 0.00 0.00 4.00
3819 5568 3.833559 ATCCTCACAAAACTCCCCATT 57.166 42.857 0.00 0.00 0.00 3.16
3820 5569 2.875296 TCCTCACAAAACTCCCCATTG 58.125 47.619 0.00 0.00 0.00 2.82
3821 5570 1.273327 CCTCACAAAACTCCCCATTGC 59.727 52.381 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.190833 CCACTCCACACTGCCTCTCT 61.191 60.000 0.00 0.00 0.00 3.10
1 2 1.294780 CCACTCCACACTGCCTCTC 59.705 63.158 0.00 0.00 0.00 3.20
2 3 1.460305 ACCACTCCACACTGCCTCT 60.460 57.895 0.00 0.00 0.00 3.69
3 4 1.302033 CACCACTCCACACTGCCTC 60.302 63.158 0.00 0.00 0.00 4.70
4 5 1.635817 AACACCACTCCACACTGCCT 61.636 55.000 0.00 0.00 0.00 4.75
5 6 1.152963 AACACCACTCCACACTGCC 60.153 57.895 0.00 0.00 0.00 4.85
6 7 0.463654 TCAACACCACTCCACACTGC 60.464 55.000 0.00 0.00 0.00 4.40
7 8 1.875514 CATCAACACCACTCCACACTG 59.124 52.381 0.00 0.00 0.00 3.66
8 9 1.490490 ACATCAACACCACTCCACACT 59.510 47.619 0.00 0.00 0.00 3.55
9 10 1.873591 GACATCAACACCACTCCACAC 59.126 52.381 0.00 0.00 0.00 3.82
10 11 1.540146 CGACATCAACACCACTCCACA 60.540 52.381 0.00 0.00 0.00 4.17
11 12 1.148310 CGACATCAACACCACTCCAC 58.852 55.000 0.00 0.00 0.00 4.02
12 13 0.034756 CCGACATCAACACCACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
13 14 0.034896 ACCGACATCAACACCACTCC 59.965 55.000 0.00 0.00 0.00 3.85
14 15 1.148310 CACCGACATCAACACCACTC 58.852 55.000 0.00 0.00 0.00 3.51
15 16 0.756294 TCACCGACATCAACACCACT 59.244 50.000 0.00 0.00 0.00 4.00
16 17 0.865769 GTCACCGACATCAACACCAC 59.134 55.000 0.00 0.00 32.09 4.16
17 18 0.598942 CGTCACCGACATCAACACCA 60.599 55.000 0.00 0.00 35.63 4.17
18 19 0.599204 ACGTCACCGACATCAACACC 60.599 55.000 0.00 0.00 37.88 4.16
19 20 0.506932 CACGTCACCGACATCAACAC 59.493 55.000 0.00 0.00 37.88 3.32
20 21 0.598942 CCACGTCACCGACATCAACA 60.599 55.000 0.00 0.00 37.88 3.33
21 22 0.319211 TCCACGTCACCGACATCAAC 60.319 55.000 0.00 0.00 37.88 3.18
22 23 0.038618 CTCCACGTCACCGACATCAA 60.039 55.000 0.00 0.00 37.88 2.57
23 24 1.584495 CTCCACGTCACCGACATCA 59.416 57.895 0.00 0.00 37.88 3.07
24 25 1.153823 CCTCCACGTCACCGACATC 60.154 63.158 0.00 0.00 37.88 3.06
25 26 1.595993 CTCCTCCACGTCACCGACAT 61.596 60.000 0.00 0.00 37.88 3.06
26 27 2.203379 TCCTCCACGTCACCGACA 60.203 61.111 0.00 0.00 37.88 4.35
27 28 2.567049 CTCCTCCACGTCACCGAC 59.433 66.667 0.00 0.00 37.88 4.79
28 29 3.371063 GCTCCTCCACGTCACCGA 61.371 66.667 0.00 0.00 37.88 4.69
29 30 3.374402 AGCTCCTCCACGTCACCG 61.374 66.667 0.00 0.00 40.83 4.94
30 31 2.262915 CAGCTCCTCCACGTCACC 59.737 66.667 0.00 0.00 0.00 4.02
31 32 2.262915 CCAGCTCCTCCACGTCAC 59.737 66.667 0.00 0.00 0.00 3.67
32 33 2.203640 ACCAGCTCCTCCACGTCA 60.204 61.111 0.00 0.00 0.00 4.35
33 34 1.608717 ATGACCAGCTCCTCCACGTC 61.609 60.000 0.00 0.00 0.00 4.34
34 35 1.608717 GATGACCAGCTCCTCCACGT 61.609 60.000 0.00 0.00 0.00 4.49
35 36 1.142748 GATGACCAGCTCCTCCACG 59.857 63.158 0.00 0.00 0.00 4.94
36 37 1.524482 GGATGACCAGCTCCTCCAC 59.476 63.158 0.00 0.00 34.53 4.02
37 38 1.690633 GGGATGACCAGCTCCTCCA 60.691 63.158 0.00 0.00 35.78 3.86
38 39 1.690633 TGGGATGACCAGCTCCTCC 60.691 63.158 0.00 0.00 46.80 4.30
39 40 4.056805 TGGGATGACCAGCTCCTC 57.943 61.111 0.00 0.00 46.80 3.71
47 48 1.064463 TCCTCATGCTTTGGGATGACC 60.064 52.381 0.00 0.00 43.58 4.02
48 49 2.425143 TCCTCATGCTTTGGGATGAC 57.575 50.000 0.00 0.00 43.58 3.06
49 50 3.181440 GGTATCCTCATGCTTTGGGATGA 60.181 47.826 14.53 0.81 45.63 2.92
50 51 3.152341 GGTATCCTCATGCTTTGGGATG 58.848 50.000 14.53 0.00 41.69 3.51
51 52 2.785269 TGGTATCCTCATGCTTTGGGAT 59.215 45.455 0.00 0.00 38.33 3.85
52 53 2.092429 GTGGTATCCTCATGCTTTGGGA 60.092 50.000 0.00 0.00 0.00 4.37
53 54 2.301346 GTGGTATCCTCATGCTTTGGG 58.699 52.381 0.00 0.00 0.00 4.12
54 55 2.092212 AGGTGGTATCCTCATGCTTTGG 60.092 50.000 0.00 0.00 31.32 3.28
55 56 3.287867 AGGTGGTATCCTCATGCTTTG 57.712 47.619 0.00 0.00 31.32 2.77
64 65 2.512896 TCGGAACTAGAGGTGGTATCCT 59.487 50.000 0.00 0.00 40.97 3.24
65 66 2.941480 TCGGAACTAGAGGTGGTATCC 58.059 52.381 0.00 0.00 0.00 2.59
66 67 3.188873 CGATCGGAACTAGAGGTGGTATC 59.811 52.174 7.38 0.00 0.00 2.24
67 68 3.147629 CGATCGGAACTAGAGGTGGTAT 58.852 50.000 7.38 0.00 0.00 2.73
68 69 2.569059 CGATCGGAACTAGAGGTGGTA 58.431 52.381 7.38 0.00 0.00 3.25
69 70 1.390565 CGATCGGAACTAGAGGTGGT 58.609 55.000 7.38 0.00 0.00 4.16
70 71 0.030908 GCGATCGGAACTAGAGGTGG 59.969 60.000 18.30 0.00 0.00 4.61
71 72 0.030908 GGCGATCGGAACTAGAGGTG 59.969 60.000 18.30 0.00 0.00 4.00
72 73 1.445716 CGGCGATCGGAACTAGAGGT 61.446 60.000 18.30 0.00 34.75 3.85
73 74 1.283181 CGGCGATCGGAACTAGAGG 59.717 63.158 18.30 0.00 34.75 3.69
74 75 4.924924 CGGCGATCGGAACTAGAG 57.075 61.111 18.30 0.00 34.75 2.43
83 84 3.264897 CTCAAAGGCCGGCGATCG 61.265 66.667 22.54 11.69 38.88 3.69
84 85 3.577313 GCTCAAAGGCCGGCGATC 61.577 66.667 22.54 6.73 0.00 3.69
85 86 3.918253 TTGCTCAAAGGCCGGCGAT 62.918 57.895 22.54 8.99 0.00 4.58
86 87 4.634703 TTGCTCAAAGGCCGGCGA 62.635 61.111 22.54 11.24 0.00 5.54
87 88 3.206211 TTTTGCTCAAAGGCCGGCG 62.206 57.895 22.54 6.52 0.00 6.46
88 89 1.664649 GTTTTGCTCAAAGGCCGGC 60.665 57.895 21.18 21.18 0.00 6.13
89 90 1.068541 GTAGTTTTGCTCAAAGGCCGG 60.069 52.381 0.00 0.00 0.00 6.13
90 91 1.880027 AGTAGTTTTGCTCAAAGGCCG 59.120 47.619 0.00 0.00 0.00 6.13
91 92 4.519350 ACTAAGTAGTTTTGCTCAAAGGCC 59.481 41.667 0.00 0.00 31.13 5.19
92 93 5.470437 AGACTAAGTAGTTTTGCTCAAAGGC 59.530 40.000 0.00 0.00 36.50 4.35
93 94 7.117956 GGTAGACTAAGTAGTTTTGCTCAAAGG 59.882 40.741 0.00 0.00 36.50 3.11
94 95 7.117956 GGGTAGACTAAGTAGTTTTGCTCAAAG 59.882 40.741 0.00 0.00 36.50 2.77
95 96 6.932960 GGGTAGACTAAGTAGTTTTGCTCAAA 59.067 38.462 0.00 0.00 36.50 2.69
96 97 6.461640 GGGTAGACTAAGTAGTTTTGCTCAA 58.538 40.000 0.00 0.00 36.50 3.02
97 98 5.046807 GGGGTAGACTAAGTAGTTTTGCTCA 60.047 44.000 0.00 0.00 36.50 4.26
98 99 5.417811 GGGGTAGACTAAGTAGTTTTGCTC 58.582 45.833 0.00 0.00 36.50 4.26
99 100 4.224594 GGGGGTAGACTAAGTAGTTTTGCT 59.775 45.833 0.00 0.00 36.50 3.91
100 101 4.224594 AGGGGGTAGACTAAGTAGTTTTGC 59.775 45.833 0.00 0.00 36.50 3.68
101 102 5.105023 GGAGGGGGTAGACTAAGTAGTTTTG 60.105 48.000 0.00 0.00 36.50 2.44
102 103 5.028802 GGAGGGGGTAGACTAAGTAGTTTT 58.971 45.833 0.00 0.00 36.50 2.43
103 104 4.573737 GGGAGGGGGTAGACTAAGTAGTTT 60.574 50.000 0.00 0.00 36.50 2.66
104 105 3.052262 GGGAGGGGGTAGACTAAGTAGTT 60.052 52.174 0.00 0.00 36.50 2.24
105 106 2.517553 GGGAGGGGGTAGACTAAGTAGT 59.482 54.545 0.00 0.00 39.71 2.73
106 107 2.517127 TGGGAGGGGGTAGACTAAGTAG 59.483 54.545 0.00 0.00 0.00 2.57
107 108 2.517127 CTGGGAGGGGGTAGACTAAGTA 59.483 54.545 0.00 0.00 0.00 2.24
108 109 1.291335 CTGGGAGGGGGTAGACTAAGT 59.709 57.143 0.00 0.00 0.00 2.24
109 110 1.413227 CCTGGGAGGGGGTAGACTAAG 60.413 61.905 0.00 0.00 0.00 2.18
110 111 0.640495 CCTGGGAGGGGGTAGACTAA 59.360 60.000 0.00 0.00 0.00 2.24
111 112 0.254444 TCCTGGGAGGGGGTAGACTA 60.254 60.000 0.00 0.00 35.59 2.59
112 113 1.160289 TTCCTGGGAGGGGGTAGACT 61.160 60.000 0.00 0.00 35.59 3.24
113 114 0.981801 GTTCCTGGGAGGGGGTAGAC 60.982 65.000 0.00 0.00 35.59 2.59
114 115 1.394963 GTTCCTGGGAGGGGGTAGA 59.605 63.158 0.00 0.00 35.59 2.59
115 116 1.693103 GGTTCCTGGGAGGGGGTAG 60.693 68.421 0.00 0.00 35.59 3.18
116 117 0.861364 TAGGTTCCTGGGAGGGGGTA 60.861 60.000 1.12 0.00 35.59 3.69
117 118 2.188947 TAGGTTCCTGGGAGGGGGT 61.189 63.158 1.12 0.00 35.59 4.95
118 119 1.384643 CTAGGTTCCTGGGAGGGGG 60.385 68.421 1.12 0.00 35.59 5.40
119 120 2.073101 GCTAGGTTCCTGGGAGGGG 61.073 68.421 1.12 0.00 35.59 4.79
120 121 2.435693 CGCTAGGTTCCTGGGAGGG 61.436 68.421 1.12 0.00 35.59 4.30
121 122 2.435693 CCGCTAGGTTCCTGGGAGG 61.436 68.421 1.12 2.50 36.46 4.30
122 123 3.221222 CCGCTAGGTTCCTGGGAG 58.779 66.667 1.12 0.00 0.00 4.30
132 133 0.830648 TTGATCCCTTCACCGCTAGG 59.169 55.000 0.00 0.00 45.13 3.02
133 134 2.918712 ATTGATCCCTTCACCGCTAG 57.081 50.000 0.00 0.00 32.84 3.42
134 135 4.102524 ACAATATTGATCCCTTCACCGCTA 59.897 41.667 22.16 0.00 32.84 4.26
135 136 3.117888 ACAATATTGATCCCTTCACCGCT 60.118 43.478 22.16 0.00 32.84 5.52
136 137 3.214328 ACAATATTGATCCCTTCACCGC 58.786 45.455 22.16 0.00 32.84 5.68
137 138 3.494626 CGACAATATTGATCCCTTCACCG 59.505 47.826 22.16 5.62 32.84 4.94
138 139 4.703897 TCGACAATATTGATCCCTTCACC 58.296 43.478 22.16 0.00 32.84 4.02
139 140 4.212214 GCTCGACAATATTGATCCCTTCAC 59.788 45.833 22.16 0.00 32.84 3.18
140 141 4.101585 AGCTCGACAATATTGATCCCTTCA 59.898 41.667 22.16 0.00 0.00 3.02
141 142 4.636249 AGCTCGACAATATTGATCCCTTC 58.364 43.478 22.16 6.91 0.00 3.46
142 143 4.696479 AGCTCGACAATATTGATCCCTT 57.304 40.909 22.16 0.00 0.00 3.95
143 144 4.636249 GAAGCTCGACAATATTGATCCCT 58.364 43.478 22.16 8.19 0.00 4.20
144 145 3.430218 CGAAGCTCGACAATATTGATCCC 59.570 47.826 22.16 7.05 43.74 3.85
145 146 4.051922 ACGAAGCTCGACAATATTGATCC 58.948 43.478 22.16 9.30 43.74 3.36
146 147 5.643339 AACGAAGCTCGACAATATTGATC 57.357 39.130 22.16 13.61 43.74 2.92
147 148 5.812642 AGAAACGAAGCTCGACAATATTGAT 59.187 36.000 22.16 6.36 43.74 2.57
148 149 5.168569 AGAAACGAAGCTCGACAATATTGA 58.831 37.500 22.16 0.00 43.74 2.57
149 150 5.456192 AGAAACGAAGCTCGACAATATTG 57.544 39.130 14.01 14.01 43.74 1.90
150 151 5.637810 TCAAGAAACGAAGCTCGACAATATT 59.362 36.000 11.64 0.00 43.74 1.28
151 152 5.168569 TCAAGAAACGAAGCTCGACAATAT 58.831 37.500 11.64 0.00 43.74 1.28
152 153 4.552355 TCAAGAAACGAAGCTCGACAATA 58.448 39.130 11.64 0.00 43.74 1.90
153 154 3.390135 TCAAGAAACGAAGCTCGACAAT 58.610 40.909 11.64 0.00 43.74 2.71
154 155 2.816689 TCAAGAAACGAAGCTCGACAA 58.183 42.857 11.64 0.00 43.74 3.18
155 156 2.502213 TCAAGAAACGAAGCTCGACA 57.498 45.000 11.64 0.00 43.74 4.35
156 157 3.726436 CATTCAAGAAACGAAGCTCGAC 58.274 45.455 11.64 4.24 43.74 4.20
157 158 2.157668 GCATTCAAGAAACGAAGCTCGA 59.842 45.455 11.64 0.00 43.74 4.04
158 159 2.096268 TGCATTCAAGAAACGAAGCTCG 60.096 45.455 0.00 4.36 46.93 5.03
159 160 3.229552 GTGCATTCAAGAAACGAAGCTC 58.770 45.455 0.00 0.00 0.00 4.09
160 161 2.618241 TGTGCATTCAAGAAACGAAGCT 59.382 40.909 0.00 0.00 0.00 3.74
161 162 2.721090 GTGTGCATTCAAGAAACGAAGC 59.279 45.455 0.00 0.00 0.00 3.86
162 163 2.966708 CGTGTGCATTCAAGAAACGAAG 59.033 45.455 0.00 0.00 0.00 3.79
163 164 2.609916 TCGTGTGCATTCAAGAAACGAA 59.390 40.909 4.71 0.00 0.00 3.85
164 165 2.205911 TCGTGTGCATTCAAGAAACGA 58.794 42.857 0.00 3.39 0.00 3.85
165 166 2.661504 TCGTGTGCATTCAAGAAACG 57.338 45.000 0.00 0.00 0.00 3.60
166 167 4.083855 TCAGATCGTGTGCATTCAAGAAAC 60.084 41.667 0.00 0.00 30.79 2.78
167 168 4.064388 TCAGATCGTGTGCATTCAAGAAA 58.936 39.130 0.00 0.00 30.79 2.52
168 169 3.433274 GTCAGATCGTGTGCATTCAAGAA 59.567 43.478 0.00 0.00 30.79 2.52
169 170 2.995939 GTCAGATCGTGTGCATTCAAGA 59.004 45.455 0.00 0.00 0.00 3.02
170 171 2.738314 TGTCAGATCGTGTGCATTCAAG 59.262 45.455 0.00 0.00 0.00 3.02
171 172 2.765122 TGTCAGATCGTGTGCATTCAA 58.235 42.857 0.00 0.00 0.00 2.69
172 173 2.453983 TGTCAGATCGTGTGCATTCA 57.546 45.000 0.00 0.00 0.00 2.57
173 174 2.931969 TCATGTCAGATCGTGTGCATTC 59.068 45.455 0.00 0.00 0.00 2.67
174 175 2.976589 TCATGTCAGATCGTGTGCATT 58.023 42.857 0.00 0.00 0.00 3.56
175 176 2.678471 TCATGTCAGATCGTGTGCAT 57.322 45.000 0.00 0.00 0.00 3.96
176 177 2.029110 TCTTCATGTCAGATCGTGTGCA 60.029 45.455 0.00 0.00 0.00 4.57
177 178 2.602211 CTCTTCATGTCAGATCGTGTGC 59.398 50.000 0.00 0.00 0.00 4.57
178 179 3.185330 CCTCTTCATGTCAGATCGTGTG 58.815 50.000 0.00 0.00 0.00 3.82
179 180 2.417924 GCCTCTTCATGTCAGATCGTGT 60.418 50.000 0.00 0.00 0.00 4.49
180 181 2.200067 GCCTCTTCATGTCAGATCGTG 58.800 52.381 0.00 0.00 0.00 4.35
181 182 1.827344 TGCCTCTTCATGTCAGATCGT 59.173 47.619 0.00 0.00 0.00 3.73
182 183 2.159128 ACTGCCTCTTCATGTCAGATCG 60.159 50.000 0.00 0.00 0.00 3.69
183 184 3.118847 TCACTGCCTCTTCATGTCAGATC 60.119 47.826 0.00 0.00 0.00 2.75
184 185 2.836372 TCACTGCCTCTTCATGTCAGAT 59.164 45.455 0.00 0.00 0.00 2.90
185 186 2.250924 TCACTGCCTCTTCATGTCAGA 58.749 47.619 0.00 0.00 0.00 3.27
186 187 2.756840 TCACTGCCTCTTCATGTCAG 57.243 50.000 0.00 0.00 0.00 3.51
187 188 2.417787 CGATCACTGCCTCTTCATGTCA 60.418 50.000 0.00 0.00 0.00 3.58
188 189 2.200067 CGATCACTGCCTCTTCATGTC 58.800 52.381 0.00 0.00 0.00 3.06
189 190 1.552337 ACGATCACTGCCTCTTCATGT 59.448 47.619 0.00 0.00 0.00 3.21
190 191 2.306341 ACGATCACTGCCTCTTCATG 57.694 50.000 0.00 0.00 0.00 3.07
191 192 3.265791 GAAACGATCACTGCCTCTTCAT 58.734 45.455 0.00 0.00 0.00 2.57
192 193 2.037121 TGAAACGATCACTGCCTCTTCA 59.963 45.455 0.00 0.00 31.50 3.02
193 194 2.688507 TGAAACGATCACTGCCTCTTC 58.311 47.619 0.00 0.00 31.50 2.87
194 195 2.839486 TGAAACGATCACTGCCTCTT 57.161 45.000 0.00 0.00 31.50 2.85
195 196 3.005554 CAATGAAACGATCACTGCCTCT 58.994 45.455 0.00 0.00 41.93 3.69
196 197 3.002791 TCAATGAAACGATCACTGCCTC 58.997 45.455 0.00 0.00 41.93 4.70
197 198 2.744202 GTCAATGAAACGATCACTGCCT 59.256 45.455 0.00 0.00 41.93 4.75
198 199 2.483877 TGTCAATGAAACGATCACTGCC 59.516 45.455 0.00 0.00 41.93 4.85
199 200 3.187227 ACTGTCAATGAAACGATCACTGC 59.813 43.478 0.00 0.00 41.93 4.40
200 201 4.997905 ACTGTCAATGAAACGATCACTG 57.002 40.909 0.00 0.00 41.93 3.66
201 202 4.627467 GCTACTGTCAATGAAACGATCACT 59.373 41.667 0.00 0.00 41.93 3.41
202 203 4.388773 TGCTACTGTCAATGAAACGATCAC 59.611 41.667 0.00 0.00 41.93 3.06
203 204 4.388773 GTGCTACTGTCAATGAAACGATCA 59.611 41.667 0.00 0.00 43.67 2.92
204 205 4.490959 CGTGCTACTGTCAATGAAACGATC 60.491 45.833 0.00 0.00 0.00 3.69
205 206 3.367932 CGTGCTACTGTCAATGAAACGAT 59.632 43.478 0.00 0.00 0.00 3.73
206 207 2.729360 CGTGCTACTGTCAATGAAACGA 59.271 45.455 0.00 0.00 0.00 3.85
207 208 2.475111 ACGTGCTACTGTCAATGAAACG 59.525 45.455 0.00 0.00 34.85 3.60
208 209 3.421826 CGACGTGCTACTGTCAATGAAAC 60.422 47.826 0.00 0.00 34.78 2.78
209 210 2.729360 CGACGTGCTACTGTCAATGAAA 59.271 45.455 0.00 0.00 34.78 2.69
210 211 2.324860 CGACGTGCTACTGTCAATGAA 58.675 47.619 0.00 0.00 34.78 2.57
211 212 1.977188 CGACGTGCTACTGTCAATGA 58.023 50.000 0.00 0.00 34.78 2.57
212 213 0.366871 GCGACGTGCTACTGTCAATG 59.633 55.000 0.00 0.00 41.73 2.82
213 214 2.738147 GCGACGTGCTACTGTCAAT 58.262 52.632 0.00 0.00 41.73 2.57
214 215 4.238385 GCGACGTGCTACTGTCAA 57.762 55.556 0.00 0.00 41.73 3.18
230 231 1.973812 GGTCTCAACTGCCCCAAGC 60.974 63.158 0.00 0.00 44.14 4.01
231 232 0.322008 GAGGTCTCAACTGCCCCAAG 60.322 60.000 0.00 0.00 0.00 3.61
232 233 0.768221 AGAGGTCTCAACTGCCCCAA 60.768 55.000 0.55 0.00 0.00 4.12
233 234 0.768221 AAGAGGTCTCAACTGCCCCA 60.768 55.000 0.55 0.00 0.00 4.96
234 235 1.066071 GTAAGAGGTCTCAACTGCCCC 60.066 57.143 0.55 0.00 0.00 5.80
235 236 1.623811 TGTAAGAGGTCTCAACTGCCC 59.376 52.381 0.55 0.00 0.00 5.36
236 237 2.563179 TCTGTAAGAGGTCTCAACTGCC 59.437 50.000 0.55 0.00 38.67 4.85
237 238 3.944055 TCTGTAAGAGGTCTCAACTGC 57.056 47.619 0.55 0.00 38.67 4.40
250 251 5.526010 ACGAAACGGCTTAAATCTGTAAG 57.474 39.130 0.00 0.00 34.71 2.34
251 252 5.927954 AACGAAACGGCTTAAATCTGTAA 57.072 34.783 0.00 0.00 0.00 2.41
252 253 5.466058 TCAAACGAAACGGCTTAAATCTGTA 59.534 36.000 0.00 0.00 0.00 2.74
253 254 4.273969 TCAAACGAAACGGCTTAAATCTGT 59.726 37.500 0.00 0.00 0.00 3.41
254 255 4.778904 TCAAACGAAACGGCTTAAATCTG 58.221 39.130 0.00 0.00 0.00 2.90
265 266 2.927429 TGCATCCATTCAAACGAAACG 58.073 42.857 0.00 0.00 0.00 3.60
343 344 2.322830 CGACTCCGACCTCACGACA 61.323 63.158 0.00 0.00 38.22 4.35
346 1924 2.979197 AAGCGACTCCGACCTCACG 61.979 63.158 0.00 0.00 38.22 4.35
351 1929 1.226717 CTAGCAAGCGACTCCGACC 60.227 63.158 0.00 0.00 38.22 4.79
413 1992 1.508632 CTACCCACAAGACCAACACG 58.491 55.000 0.00 0.00 0.00 4.49
471 2052 3.668596 AAACTCGGACGAAAACTGTTG 57.331 42.857 0.00 0.00 0.00 3.33
474 2055 3.936902 TGAAAACTCGGACGAAAACTG 57.063 42.857 0.00 0.00 0.00 3.16
502 2084 5.511386 AAGATGGAAGAGAGTTGACCAAT 57.489 39.130 0.00 0.00 34.28 3.16
519 2101 4.453819 GGGCTCCGATTCATTAGAAAGATG 59.546 45.833 0.00 0.00 37.29 2.90
526 2108 2.366916 ACTCAGGGCTCCGATTCATTAG 59.633 50.000 0.00 0.00 0.00 1.73
568 2156 9.906274 ATCCTATAAGACTTTCTCCTAAGGATT 57.094 33.333 0.00 0.00 0.00 3.01
659 2278 8.864087 AGAGCCTCTTTGATTCAAAATACTTTT 58.136 29.630 12.62 0.00 32.75 2.27
663 2282 7.912773 GCTTAGAGCCTCTTTGATTCAAAATAC 59.087 37.037 12.62 3.82 34.48 1.89
707 2326 8.034215 TGTTCTGGGCTTCAACAAAATATATTG 58.966 33.333 0.00 0.00 36.37 1.90
710 2329 7.531857 TTGTTCTGGGCTTCAACAAAATATA 57.468 32.000 6.12 0.00 37.14 0.86
718 2337 3.733443 ACAATTGTTCTGGGCTTCAAC 57.267 42.857 4.92 0.00 0.00 3.18
781 2401 7.981225 ACATGAAAACACAATAGAACAAGCTTT 59.019 29.630 0.00 0.00 0.00 3.51
927 2547 0.947660 ACGACGACGACAGCAGAGTA 60.948 55.000 15.32 0.00 42.66 2.59
948 2571 4.363999 TCTCGCGGAGTACTACTACTAAC 58.636 47.826 6.13 0.00 32.96 2.34
949 2572 4.339530 TCTCTCGCGGAGTACTACTACTAA 59.660 45.833 19.53 0.00 42.40 2.24
1017 2640 1.819632 CGGCTGTGGATAAGGGTGC 60.820 63.158 0.00 0.00 0.00 5.01
1134 2757 1.974875 TAAGGTGAGCGCGGAGACA 60.975 57.895 8.83 0.00 0.00 3.41
1153 2776 2.250939 TTGGCGCGAGTTGTTCCTG 61.251 57.895 12.10 0.00 0.00 3.86
1181 2804 0.171455 CTTCGGTCTCTCGGAGGTTG 59.829 60.000 4.96 0.00 32.42 3.77
1186 2809 0.964358 GGGTTCTTCGGTCTCTCGGA 60.964 60.000 0.00 0.00 0.00 4.55
1187 2810 1.511768 GGGTTCTTCGGTCTCTCGG 59.488 63.158 0.00 0.00 0.00 4.63
1188 2811 1.511768 GGGGTTCTTCGGTCTCTCG 59.488 63.158 0.00 0.00 0.00 4.04
1189 2812 1.898885 GGGGGTTCTTCGGTCTCTC 59.101 63.158 0.00 0.00 0.00 3.20
1190 2813 1.982938 CGGGGGTTCTTCGGTCTCT 60.983 63.158 0.00 0.00 0.00 3.10
1191 2814 0.967380 TACGGGGGTTCTTCGGTCTC 60.967 60.000 0.00 0.00 0.00 3.36
1192 2815 0.969409 CTACGGGGGTTCTTCGGTCT 60.969 60.000 0.00 0.00 0.00 3.85
1193 2816 1.514553 CTACGGGGGTTCTTCGGTC 59.485 63.158 0.00 0.00 0.00 4.79
1194 2817 1.986210 CCTACGGGGGTTCTTCGGT 60.986 63.158 0.00 0.00 0.00 4.69
1195 2818 2.897972 CCTACGGGGGTTCTTCGG 59.102 66.667 0.00 0.00 0.00 4.30
1196 2819 2.186125 GCCTACGGGGGTTCTTCG 59.814 66.667 0.00 0.00 35.12 3.79
1197 2820 2.588439 GGCCTACGGGGGTTCTTC 59.412 66.667 0.00 0.00 35.12 2.87
1198 2821 3.396570 CGGCCTACGGGGGTTCTT 61.397 66.667 0.00 0.00 39.42 2.52
1323 2946 3.452786 CTCTTCTCGCCGCTCCCA 61.453 66.667 0.00 0.00 0.00 4.37
1344 2982 3.606662 GCCAGGATCGCCGAGCTA 61.607 66.667 1.16 0.00 39.96 3.32
1578 3216 1.490069 TCATCCATCAGCCCGAAATCA 59.510 47.619 0.00 0.00 0.00 2.57
1618 3256 0.107508 ATGTTGGCCTCGTCCATCTG 60.108 55.000 3.32 0.00 35.77 2.90
1700 3338 0.455633 CTGCATTGCGGAGAAAGCAC 60.456 55.000 12.26 0.00 45.10 4.40
1739 3377 3.754850 TGCCATCACAAGAACTGAATCAG 59.245 43.478 8.98 8.98 37.52 2.90
1746 3384 3.508793 CCTGAATTGCCATCACAAGAACT 59.491 43.478 0.00 0.00 31.96 3.01
1761 3399 2.956987 GCACTGCACGCCTGAATT 59.043 55.556 0.00 0.00 0.00 2.17
1838 3476 0.602905 CCAGACGGTGGTGTTCCTTC 60.603 60.000 0.00 0.00 42.17 3.46
1920 3558 4.080863 ACTTGATCCCTGTCTACCATTGTC 60.081 45.833 0.00 0.00 0.00 3.18
1986 3624 0.315251 TGTCGAGTGCCTCTTCACAG 59.685 55.000 0.00 0.00 39.35 3.66
1998 3636 1.852633 TCTGGATGACCATGTCGAGT 58.147 50.000 0.00 0.00 45.87 4.18
2169 3807 2.739913 ACATTTCCCGTACATGTCAACG 59.260 45.455 13.10 13.10 38.80 4.10
2212 3850 7.093814 CCTTTCATCCATTCTGTCAAATACCAA 60.094 37.037 0.00 0.00 0.00 3.67
2349 3987 6.569179 TTAAGAAGGTTCACAAAGGTATGC 57.431 37.500 0.00 0.00 0.00 3.14
2454 4092 2.550830 TCAGCTCAGTTTCCAGAACC 57.449 50.000 0.00 0.00 0.00 3.62
2458 4096 2.266554 GTCGATCAGCTCAGTTTCCAG 58.733 52.381 0.00 0.00 0.00 3.86
2493 4131 2.277591 GGCAACCTCAATGCAGCCA 61.278 57.895 4.59 0.00 45.60 4.75
2515 4153 5.357314 TCTCGTTCATCCTAAGGAACAGTAG 59.643 44.000 0.00 0.00 44.43 2.57
2526 4164 3.024547 CAGGTTCCTCTCGTTCATCCTA 58.975 50.000 0.00 0.00 0.00 2.94
2571 4209 3.431411 TGTCCATCCCCTACATAACCT 57.569 47.619 0.00 0.00 0.00 3.50
2622 4260 1.455217 GATGCAGGCCAGCTCCATT 60.455 57.895 21.82 0.89 34.99 3.16
2652 4290 0.960861 GAAGCCCTGCCAAGGTGTAC 60.961 60.000 0.00 0.00 42.74 2.90
2739 4377 1.701847 ACCACATTTGTCTCAGAGCCT 59.298 47.619 0.00 0.00 0.00 4.58
2751 4389 2.985957 AAGTTTGCAGCACCACATTT 57.014 40.000 0.00 0.00 0.00 2.32
2811 4449 1.592064 TCGCACAGACATTTTCAGCA 58.408 45.000 0.00 0.00 0.00 4.41
2857 4495 2.093973 AGACCTTCGAGAACGCATCATT 60.094 45.455 0.00 0.00 39.58 2.57
2895 4533 7.011576 CAGGATCATGTTTCTTCTCTTCAGATG 59.988 40.741 0.00 0.00 0.00 2.90
2920 4558 5.491070 CATTTATCTTCTCCACTGGACACA 58.509 41.667 0.00 0.00 0.00 3.72
2955 4597 1.762957 ACATATCCCAACTCCACTCCG 59.237 52.381 0.00 0.00 0.00 4.63
2956 4598 2.771943 TCACATATCCCAACTCCACTCC 59.228 50.000 0.00 0.00 0.00 3.85
3070 4713 1.069358 GCCCAACTATCCTTCTCCTCG 59.931 57.143 0.00 0.00 0.00 4.63
3096 4739 3.244616 CCATAGGGTCAGCTGGGG 58.755 66.667 15.13 0.83 0.00 4.96
3198 4841 0.251341 ACTACCAGGCCCTTTGCTTG 60.251 55.000 0.00 0.00 46.08 4.01
3206 4849 2.224695 ACACTACAAAACTACCAGGCCC 60.225 50.000 0.00 0.00 0.00 5.80
3209 4852 5.365619 AGACAACACTACAAAACTACCAGG 58.634 41.667 0.00 0.00 0.00 4.45
3245 4888 2.617276 CCCTGTGTGAGCTGACATGATT 60.617 50.000 9.85 0.00 0.00 2.57
3274 4917 2.012673 GAGGCTGCACTAAATGACCAG 58.987 52.381 0.50 0.00 0.00 4.00
3283 4926 2.187958 AGGTACAATGAGGCTGCACTA 58.812 47.619 0.50 0.00 0.00 2.74
3284 4927 0.987294 AGGTACAATGAGGCTGCACT 59.013 50.000 0.50 0.00 0.00 4.40
3306 4949 6.183360 CCCCTGACTATTACAAGACAGTAGTC 60.183 46.154 0.00 0.00 45.31 2.59
3337 5035 0.822811 GCTGAGCATCTCTCACTCCA 59.177 55.000 0.00 0.00 46.34 3.86
3346 5044 3.198200 AGAGAATTGTGAGCTGAGCATCT 59.802 43.478 7.39 0.00 34.92 2.90
3372 5070 8.877808 AAAAAGAGTCAAACAATTCTTCATCC 57.122 30.769 0.00 0.00 0.00 3.51
3413 5111 5.200454 CACAAGATTGCTATCCGAAATTCG 58.800 41.667 8.62 8.62 40.07 3.34
3421 5119 5.297776 ACTTATGCACACAAGATTGCTATCC 59.702 40.000 10.59 0.00 39.62 2.59
3480 5205 4.982295 TGTTCTAAGACACACGACAGATTG 59.018 41.667 0.00 0.00 0.00 2.67
3481 5206 5.196341 TGTTCTAAGACACACGACAGATT 57.804 39.130 0.00 0.00 0.00 2.40
3498 5223 8.352942 GTGAACCAAGATCAAATTACTTGTTCT 58.647 33.333 4.57 0.00 43.13 3.01
3601 5337 5.705441 GGTCTGGAGATGAATGTGTTTACAA 59.295 40.000 0.00 0.00 40.84 2.41
3610 5352 1.208052 ACACGGGTCTGGAGATGAATG 59.792 52.381 0.00 0.00 0.00 2.67
3612 5354 0.895530 GACACGGGTCTGGAGATGAA 59.104 55.000 11.49 0.00 40.99 2.57
3625 5367 5.801350 ATCTGACACATTTTATGACACGG 57.199 39.130 0.00 0.00 0.00 4.94
3627 5369 8.383619 GTGAGTATCTGACACATTTTATGACAC 58.616 37.037 0.00 0.00 34.92 3.67
3638 5380 1.550524 GCTGGGTGAGTATCTGACACA 59.449 52.381 0.00 0.00 36.42 3.72
3639 5381 1.827969 AGCTGGGTGAGTATCTGACAC 59.172 52.381 0.00 0.00 34.92 3.67
3640 5382 1.827344 CAGCTGGGTGAGTATCTGACA 59.173 52.381 5.57 0.00 34.92 3.58
3727 5476 5.782047 TGGACTCACTTTATGCAAAATTGG 58.218 37.500 0.00 0.00 0.00 3.16
3781 5530 4.666512 AGGATTGGTTGTGCTTTCTGTAT 58.333 39.130 0.00 0.00 0.00 2.29
3783 5532 2.887152 GAGGATTGGTTGTGCTTTCTGT 59.113 45.455 0.00 0.00 0.00 3.41
3784 5533 2.886523 TGAGGATTGGTTGTGCTTTCTG 59.113 45.455 0.00 0.00 0.00 3.02
3785 5534 2.887152 GTGAGGATTGGTTGTGCTTTCT 59.113 45.455 0.00 0.00 0.00 2.52
3786 5535 2.622942 TGTGAGGATTGGTTGTGCTTTC 59.377 45.455 0.00 0.00 0.00 2.62
3787 5536 2.665165 TGTGAGGATTGGTTGTGCTTT 58.335 42.857 0.00 0.00 0.00 3.51
3789 5538 2.363306 TTGTGAGGATTGGTTGTGCT 57.637 45.000 0.00 0.00 0.00 4.40
3790 5539 3.123050 GTTTTGTGAGGATTGGTTGTGC 58.877 45.455 0.00 0.00 0.00 4.57
3791 5540 4.499696 GGAGTTTTGTGAGGATTGGTTGTG 60.500 45.833 0.00 0.00 0.00 3.33
3792 5541 3.636764 GGAGTTTTGTGAGGATTGGTTGT 59.363 43.478 0.00 0.00 0.00 3.32
3793 5542 3.005791 GGGAGTTTTGTGAGGATTGGTTG 59.994 47.826 0.00 0.00 0.00 3.77
3794 5543 3.230976 GGGAGTTTTGTGAGGATTGGTT 58.769 45.455 0.00 0.00 0.00 3.67
3795 5544 2.490902 GGGGAGTTTTGTGAGGATTGGT 60.491 50.000 0.00 0.00 0.00 3.67
3796 5545 2.171003 GGGGAGTTTTGTGAGGATTGG 58.829 52.381 0.00 0.00 0.00 3.16
3797 5546 2.875296 TGGGGAGTTTTGTGAGGATTG 58.125 47.619 0.00 0.00 0.00 2.67
3798 5547 3.833559 ATGGGGAGTTTTGTGAGGATT 57.166 42.857 0.00 0.00 0.00 3.01
3799 5548 3.434309 CAATGGGGAGTTTTGTGAGGAT 58.566 45.455 0.00 0.00 0.00 3.24
3800 5549 2.875296 CAATGGGGAGTTTTGTGAGGA 58.125 47.619 0.00 0.00 0.00 3.71
3801 5550 1.273327 GCAATGGGGAGTTTTGTGAGG 59.727 52.381 0.00 0.00 0.00 3.86
3802 5551 1.273327 GGCAATGGGGAGTTTTGTGAG 59.727 52.381 0.00 0.00 0.00 3.51
3803 5552 1.337118 GGCAATGGGGAGTTTTGTGA 58.663 50.000 0.00 0.00 0.00 3.58
3804 5553 1.047002 TGGCAATGGGGAGTTTTGTG 58.953 50.000 0.00 0.00 0.00 3.33
3805 5554 1.047801 GTGGCAATGGGGAGTTTTGT 58.952 50.000 0.00 0.00 0.00 2.83
3806 5555 1.047002 TGTGGCAATGGGGAGTTTTG 58.953 50.000 0.00 0.00 0.00 2.44
3807 5556 1.047801 GTGTGGCAATGGGGAGTTTT 58.952 50.000 0.00 0.00 0.00 2.43
3808 5557 0.188342 AGTGTGGCAATGGGGAGTTT 59.812 50.000 0.00 0.00 0.00 2.66
3809 5558 0.188342 AAGTGTGGCAATGGGGAGTT 59.812 50.000 0.00 0.00 0.00 3.01
3810 5559 0.188342 AAAGTGTGGCAATGGGGAGT 59.812 50.000 0.00 0.00 0.00 3.85
3811 5560 2.214376 TAAAGTGTGGCAATGGGGAG 57.786 50.000 0.00 0.00 0.00 4.30
3812 5561 2.225242 ACATAAAGTGTGGCAATGGGGA 60.225 45.455 0.00 0.00 40.28 4.81
3813 5562 2.178580 ACATAAAGTGTGGCAATGGGG 58.821 47.619 0.00 0.00 40.28 4.96
3814 5563 3.959535 AACATAAAGTGTGGCAATGGG 57.040 42.857 0.00 0.00 41.14 4.00
3815 5564 6.397272 ACATTAACATAAAGTGTGGCAATGG 58.603 36.000 0.00 0.00 41.14 3.16
3816 5565 7.598118 TGAACATTAACATAAAGTGTGGCAATG 59.402 33.333 0.00 0.00 41.14 2.82
3817 5566 7.665690 TGAACATTAACATAAAGTGTGGCAAT 58.334 30.769 0.00 0.00 41.14 3.56
3818 5567 7.043961 TGAACATTAACATAAAGTGTGGCAA 57.956 32.000 0.00 0.00 41.14 4.52
3819 5568 6.641169 TGAACATTAACATAAAGTGTGGCA 57.359 33.333 0.00 0.00 41.14 4.92
3820 5569 7.812191 TGAATGAACATTAACATAAAGTGTGGC 59.188 33.333 0.00 0.00 41.14 5.01
3821 5570 9.859427 ATGAATGAACATTAACATAAAGTGTGG 57.141 29.630 0.00 0.00 41.14 4.17
3852 5601 0.721718 GGATGTGAGCGTGTACAAGC 59.278 55.000 23.97 23.97 36.04 4.01
3861 5610 3.181516 GCTTTCTGTTTAGGATGTGAGCG 60.182 47.826 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.