Multiple sequence alignment - TraesCS6D01G277900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G277900 chr6D 100.000 5405 0 0 1 5405 386429726 386435130 0.000000e+00 9982.0
1 TraesCS6D01G277900 chr6B 93.450 3832 164 28 778 4573 577356217 577359997 0.000000e+00 5605.0
2 TraesCS6D01G277900 chr6A 92.470 3453 149 36 1153 4573 531516273 531519646 0.000000e+00 4833.0
3 TraesCS6D01G277900 chr6A 87.163 779 61 8 1 775 531512979 531513722 0.000000e+00 848.0
4 TraesCS6D01G277900 chr6A 92.795 347 11 7 787 1128 531515635 531515972 1.750000e-134 490.0
5 TraesCS6D01G277900 chr6A 95.187 187 8 1 1262 1448 32010576 32010761 1.470000e-75 294.0
6 TraesCS6D01G277900 chr6A 85.955 178 23 2 1 178 514898556 514898381 7.150000e-44 189.0
7 TraesCS6D01G277900 chr6A 88.571 70 8 0 1223 1292 598816491 598816422 9.650000e-13 86.1
8 TraesCS6D01G277900 chr2D 98.323 835 12 1 4571 5405 562357024 562356192 0.000000e+00 1463.0
9 TraesCS6D01G277900 chr2D 86.189 391 46 2 183 565 423334666 423335056 3.010000e-112 416.0
10 TraesCS6D01G277900 chr2D 87.393 349 40 3 183 528 508164480 508164827 1.090000e-106 398.0
11 TraesCS6D01G277900 chr2D 85.205 365 52 1 183 545 635761667 635762031 1.840000e-99 374.0
12 TraesCS6D01G277900 chr2D 87.349 166 21 0 1 166 114699679 114699844 1.990000e-44 191.0
13 TraesCS6D01G277900 chr4D 97.297 814 19 2 4592 5405 95050000 95049190 0.000000e+00 1378.0
14 TraesCS6D01G277900 chr2B 96.172 836 29 2 4570 5405 67087818 67086986 0.000000e+00 1363.0
15 TraesCS6D01G277900 chr2B 92.663 845 55 5 4563 5405 706189787 706188948 0.000000e+00 1210.0
16 TraesCS6D01G277900 chr7D 96.053 836 27 5 4570 5405 192076724 192077553 0.000000e+00 1356.0
17 TraesCS6D01G277900 chr7D 85.165 364 51 2 183 544 504017658 504017296 2.380000e-98 370.0
18 TraesCS6D01G277900 chr1B 95.694 836 33 2 4571 5405 558513240 558512407 0.000000e+00 1341.0
19 TraesCS6D01G277900 chr1B 91.150 226 9 8 1262 1486 4618745 4618530 4.090000e-76 296.0
20 TraesCS6D01G277900 chr4B 95.335 836 29 3 4571 5405 63940776 63941602 0.000000e+00 1319.0
21 TraesCS6D01G277900 chr4B 94.465 831 41 4 4570 5398 55316322 55317149 0.000000e+00 1275.0
22 TraesCS6D01G277900 chr5A 94.504 837 41 4 4570 5405 479398092 479398924 0.000000e+00 1286.0
23 TraesCS6D01G277900 chr5A 97.758 446 9 1 1266 1711 639313369 639312925 0.000000e+00 767.0
24 TraesCS6D01G277900 chr5A 85.989 364 49 1 183 544 615294977 615294614 6.570000e-104 388.0
25 TraesCS6D01G277900 chr5A 96.721 183 6 0 1266 1448 441127044 441126862 6.800000e-79 305.0
26 TraesCS6D01G277900 chr5D 86.849 365 44 3 184 545 456846973 456847336 6.520000e-109 405.0
27 TraesCS6D01G277900 chr5D 86.813 364 46 1 183 544 457528017 457528380 6.520000e-109 405.0
28 TraesCS6D01G277900 chr5D 87.006 177 23 0 1 177 426184672 426184848 3.300000e-47 200.0
29 TraesCS6D01G277900 chr5D 78.049 123 23 4 644 762 327723902 327724024 2.090000e-09 75.0
30 TraesCS6D01G277900 chr4A 85.472 413 33 17 1091 1486 411856089 411855687 6.520000e-109 405.0
31 TraesCS6D01G277900 chr4A 84.833 389 52 2 183 564 512029522 512029134 8.490000e-103 385.0
32 TraesCS6D01G277900 chr7A 96.175 183 7 0 1266 1448 636331258 636331076 3.160000e-77 300.0
33 TraesCS6D01G277900 chr7A 87.135 171 19 2 1091 1258 636331385 636331215 1.990000e-44 191.0
34 TraesCS6D01G277900 chr2A 94.652 187 9 1 1262 1448 742470565 742470380 6.850000e-74 289.0
35 TraesCS6D01G277900 chr2A 92.617 149 10 1 1091 1238 780183652 780183504 4.240000e-51 213.0
36 TraesCS6D01G277900 chr1A 95.082 183 9 0 1266 1448 10197098 10196916 6.850000e-74 289.0
37 TraesCS6D01G277900 chr1A 91.946 149 11 1 1091 1238 10197225 10197077 1.970000e-49 207.0
38 TraesCS6D01G277900 chr1A 87.805 164 19 1 1 164 559580444 559580606 1.990000e-44 191.0
39 TraesCS6D01G277900 chrUn 89.697 165 17 0 2 166 20701287 20701451 1.530000e-50 211.0
40 TraesCS6D01G277900 chr3D 91.946 149 11 1 1091 1238 216614562 216614414 1.970000e-49 207.0
41 TraesCS6D01G277900 chr3D 88.485 165 19 0 1 165 161719176 161719340 3.300000e-47 200.0
42 TraesCS6D01G277900 chr5B 91.275 149 12 1 1091 1238 443005929 443005781 9.180000e-48 202.0
43 TraesCS6D01G277900 chr5B 95.745 94 4 0 1512 1605 613493803 613493710 9.380000e-33 152.0
44 TraesCS6D01G277900 chr1D 87.079 178 23 0 1 178 467384482 467384659 9.180000e-48 202.0
45 TraesCS6D01G277900 chr3B 86.517 178 24 0 1 178 174197470 174197293 4.270000e-46 196.0
46 TraesCS6D01G277900 chr3A 91.096 146 12 1 1091 1235 749829846 749829701 4.270000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G277900 chr6D 386429726 386435130 5404 False 9982 9982 100.000000 1 5405 1 chr6D.!!$F1 5404
1 TraesCS6D01G277900 chr6B 577356217 577359997 3780 False 5605 5605 93.450000 778 4573 1 chr6B.!!$F1 3795
2 TraesCS6D01G277900 chr6A 531512979 531519646 6667 False 2057 4833 90.809333 1 4573 3 chr6A.!!$F2 4572
3 TraesCS6D01G277900 chr2D 562356192 562357024 832 True 1463 1463 98.323000 4571 5405 1 chr2D.!!$R1 834
4 TraesCS6D01G277900 chr4D 95049190 95050000 810 True 1378 1378 97.297000 4592 5405 1 chr4D.!!$R1 813
5 TraesCS6D01G277900 chr2B 67086986 67087818 832 True 1363 1363 96.172000 4570 5405 1 chr2B.!!$R1 835
6 TraesCS6D01G277900 chr2B 706188948 706189787 839 True 1210 1210 92.663000 4563 5405 1 chr2B.!!$R2 842
7 TraesCS6D01G277900 chr7D 192076724 192077553 829 False 1356 1356 96.053000 4570 5405 1 chr7D.!!$F1 835
8 TraesCS6D01G277900 chr1B 558512407 558513240 833 True 1341 1341 95.694000 4571 5405 1 chr1B.!!$R2 834
9 TraesCS6D01G277900 chr4B 63940776 63941602 826 False 1319 1319 95.335000 4571 5405 1 chr4B.!!$F2 834
10 TraesCS6D01G277900 chr4B 55316322 55317149 827 False 1275 1275 94.465000 4570 5398 1 chr4B.!!$F1 828
11 TraesCS6D01G277900 chr5A 479398092 479398924 832 False 1286 1286 94.504000 4570 5405 1 chr5A.!!$F1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.180642 TGCCGTGGTTGAGGTGTTTA 59.819 50.0 0.00 0.0 0.0 2.01 F
981 2891 0.541863 ATAACCAACTCCGAGCCCAG 59.458 55.0 0.00 0.0 0.0 4.45 F
1959 4180 0.582005 GTGACTCGTCCAACACTTGC 59.418 55.0 0.00 0.0 0.0 4.01 F
2130 4351 0.335019 TCATTGAGAGAGACCCGGGA 59.665 55.0 32.02 0.0 0.0 5.14 F
3148 5377 0.615850 AGCAAAGAGGTAGGGACAGC 59.384 55.0 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 3663 0.034059 CACTGGACTTGGCTCGTTCT 59.966 55.000 0.00 0.00 0.00 3.01 R
2121 4342 0.178975 TTGCAACAATTCCCGGGTCT 60.179 50.000 22.86 5.99 0.00 3.85 R
3808 6039 0.249868 CGTTCAGGAGGCAGAACACA 60.250 55.000 0.00 0.00 43.20 3.72 R
4006 6237 2.508526 GATATGGTGAAGGCCATCCAC 58.491 52.381 5.01 9.64 45.47 4.02 R
5086 7321 0.252696 AGGGTATGGACTGCTGACCA 60.253 55.000 16.22 16.22 41.75 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.992170 ATCGAGTGCTCAACCGTAAC 58.008 50.000 0.00 0.00 0.00 2.50
52 53 2.357760 TCAACCGTAACAGGGCGC 60.358 61.111 0.00 0.00 35.02 6.53
69 70 1.154413 GCGCGACCATTTGACACTG 60.154 57.895 12.10 0.00 0.00 3.66
75 76 3.273434 CGACCATTTGACACTGATGGAT 58.727 45.455 15.18 3.82 42.31 3.41
81 82 5.295292 CCATTTGACACTGATGGATGACTAC 59.705 44.000 5.99 0.00 42.31 2.73
91 92 0.463833 GGATGACTACTTTGCCCCCG 60.464 60.000 0.00 0.00 0.00 5.73
94 95 0.539986 TGACTACTTTGCCCCCGATC 59.460 55.000 0.00 0.00 0.00 3.69
101 102 1.910580 TTTGCCCCCGATCCACTCTC 61.911 60.000 0.00 0.00 0.00 3.20
104 105 3.917760 CCCCGATCCACTCTCCGC 61.918 72.222 0.00 0.00 0.00 5.54
106 107 2.415010 CCGATCCACTCTCCGCTG 59.585 66.667 0.00 0.00 0.00 5.18
117 118 2.039084 ACTCTCCGCTGACCATTTTCTT 59.961 45.455 0.00 0.00 0.00 2.52
119 120 1.394917 CTCCGCTGACCATTTTCTTCG 59.605 52.381 0.00 0.00 0.00 3.79
169 170 3.378112 CGATCATTTGTACCATGGCTTGT 59.622 43.478 13.04 0.00 0.00 3.16
170 171 4.574421 CGATCATTTGTACCATGGCTTGTA 59.426 41.667 13.04 0.00 0.00 2.41
182 183 4.576463 CCATGGCTTGTAGTCCTATTGTTC 59.424 45.833 0.00 0.00 0.00 3.18
201 202 6.540438 TGTTCGATTGGGTTCTCTAGTTAT 57.460 37.500 0.00 0.00 0.00 1.89
257 258 1.515519 GCACGGTCGCTGATTCGTA 60.516 57.895 0.00 0.00 34.31 3.43
279 280 2.559440 GACGAGTACCTACGGATGTCT 58.441 52.381 8.95 0.00 0.00 3.41
282 283 2.941064 CGAGTACCTACGGATGTCTGAA 59.059 50.000 0.00 0.00 0.00 3.02
317 318 2.596346 TGTCATGGTCAGGTTTGCAAT 58.404 42.857 0.00 0.00 0.00 3.56
320 321 2.070783 CATGGTCAGGTTTGCAATTGC 58.929 47.619 23.69 23.69 42.50 3.56
337 338 0.180642 TGCCGTGGTTGAGGTGTTTA 59.819 50.000 0.00 0.00 0.00 2.01
350 351 1.071699 GGTGTTTAGACCTCAGTGCCA 59.928 52.381 0.00 0.00 32.69 4.92
352 353 2.037251 GTGTTTAGACCTCAGTGCCAGA 59.963 50.000 0.00 0.00 0.00 3.86
395 398 3.516981 CGAGAGGCTCTTCAATCTCAA 57.483 47.619 19.80 0.00 38.46 3.02
399 402 5.240013 AGAGGCTCTTCAATCTCAAAAGT 57.760 39.130 12.24 0.00 0.00 2.66
426 429 1.037030 TGGCCCGATTTGCTTGGATC 61.037 55.000 0.00 0.00 0.00 3.36
428 431 1.037030 GCCCGATTTGCTTGGATCCA 61.037 55.000 11.44 11.44 0.00 3.41
431 434 3.221771 CCCGATTTGCTTGGATCCATTA 58.778 45.455 17.06 0.00 0.00 1.90
449 452 5.870433 TCCATTAACTGCATGCATTGAAAAG 59.130 36.000 22.97 10.18 0.00 2.27
461 464 3.742882 GCATTGAAAAGGAAAGAACAGCC 59.257 43.478 0.00 0.00 0.00 4.85
464 467 3.897239 TGAAAAGGAAAGAACAGCCTGA 58.103 40.909 0.00 0.00 31.06 3.86
485 488 7.484140 CCTGAAGGCTTTACAAGGAAAATATC 58.516 38.462 0.00 0.00 0.00 1.63
488 491 7.888021 TGAAGGCTTTACAAGGAAAATATCAGA 59.112 33.333 0.00 0.00 0.00 3.27
511 514 4.702131 AGTCATGTTAAGAAGCCAACCATC 59.298 41.667 0.00 0.00 0.00 3.51
517 520 5.183713 TGTTAAGAAGCCAACCATCATTCTG 59.816 40.000 0.00 0.00 30.90 3.02
521 524 3.173953 AGCCAACCATCATTCTGGAAA 57.826 42.857 0.00 0.00 39.73 3.13
537 540 2.296752 TGGAAACAGTTGCATCACATGG 59.703 45.455 0.00 0.00 35.01 3.66
539 542 3.568538 GAAACAGTTGCATCACATGGTC 58.431 45.455 0.00 0.00 0.00 4.02
540 543 2.574006 ACAGTTGCATCACATGGTCT 57.426 45.000 0.00 0.00 0.00 3.85
541 544 2.867624 ACAGTTGCATCACATGGTCTT 58.132 42.857 0.00 0.00 0.00 3.01
542 545 3.225104 ACAGTTGCATCACATGGTCTTT 58.775 40.909 0.00 0.00 0.00 2.52
543 546 3.005050 ACAGTTGCATCACATGGTCTTTG 59.995 43.478 0.00 0.00 0.00 2.77
544 547 2.559668 AGTTGCATCACATGGTCTTTGG 59.440 45.455 0.00 0.00 0.00 3.28
545 548 0.889994 TGCATCACATGGTCTTTGGC 59.110 50.000 0.00 0.00 0.00 4.52
546 549 0.889994 GCATCACATGGTCTTTGGCA 59.110 50.000 0.00 0.00 0.00 4.92
547 550 1.479323 GCATCACATGGTCTTTGGCAT 59.521 47.619 0.00 0.00 0.00 4.40
548 551 2.737359 GCATCACATGGTCTTTGGCATG 60.737 50.000 0.00 0.00 0.00 4.06
549 552 0.889994 TCACATGGTCTTTGGCATGC 59.110 50.000 9.90 9.90 0.00 4.06
550 553 0.892755 CACATGGTCTTTGGCATGCT 59.107 50.000 18.92 0.00 0.00 3.79
551 554 1.274167 CACATGGTCTTTGGCATGCTT 59.726 47.619 18.92 0.00 0.00 3.91
552 555 1.972795 ACATGGTCTTTGGCATGCTTT 59.027 42.857 18.92 0.00 0.00 3.51
553 556 2.028748 ACATGGTCTTTGGCATGCTTTC 60.029 45.455 18.92 0.95 0.00 2.62
594 597 2.206576 AGAAGGCTTTACAAGGGCAG 57.793 50.000 0.00 0.00 0.00 4.85
600 603 3.089284 GGCTTTACAAGGGCAGTAACAT 58.911 45.455 0.00 0.00 31.67 2.71
620 623 4.737054 CATGGTCATGTTAAGAAGCCAAC 58.263 43.478 2.97 0.00 34.23 3.77
621 624 3.153919 TGGTCATGTTAAGAAGCCAACC 58.846 45.455 0.00 0.00 0.00 3.77
622 625 3.153919 GGTCATGTTAAGAAGCCAACCA 58.846 45.455 0.00 0.00 0.00 3.67
623 626 3.763897 GGTCATGTTAAGAAGCCAACCAT 59.236 43.478 0.00 0.00 0.00 3.55
624 627 4.142381 GGTCATGTTAAGAAGCCAACCATC 60.142 45.833 0.00 0.00 0.00 3.51
625 628 4.458989 GTCATGTTAAGAAGCCAACCATCA 59.541 41.667 0.00 0.00 0.00 3.07
626 629 5.126061 GTCATGTTAAGAAGCCAACCATCAT 59.874 40.000 0.00 0.00 0.00 2.45
627 630 6.318648 GTCATGTTAAGAAGCCAACCATCATA 59.681 38.462 0.00 0.00 0.00 2.15
683 686 1.149174 CATTGTATGGCGGCCTCCT 59.851 57.895 21.46 7.53 0.00 3.69
693 696 2.673523 GGCCTCCTGCATCTGTGT 59.326 61.111 0.00 0.00 43.89 3.72
694 697 1.451028 GGCCTCCTGCATCTGTGTC 60.451 63.158 0.00 0.00 43.89 3.67
697 700 0.743701 CCTCCTGCATCTGTGTCTGC 60.744 60.000 0.00 0.00 38.87 4.26
715 720 2.963371 GAACCGCTCTCTGTCCGT 59.037 61.111 0.00 0.00 0.00 4.69
734 739 2.416836 CGTAGACGGATGCAGGAGAAAA 60.417 50.000 0.00 0.00 35.37 2.29
745 750 1.885887 CAGGAGAAAATTTGCGGGTCA 59.114 47.619 0.00 0.00 0.00 4.02
751 756 1.626686 AAATTTGCGGGTCACCATGA 58.373 45.000 0.00 0.00 36.13 3.07
762 767 2.158842 GGTCACCATGAGAGATTCCCTG 60.159 54.545 0.00 0.00 0.00 4.45
775 780 7.337689 TGAGAGATTCCCTGACATGTTTAATTG 59.662 37.037 0.00 0.00 0.00 2.32
776 781 7.405292 AGAGATTCCCTGACATGTTTAATTGA 58.595 34.615 0.00 0.00 0.00 2.57
928 2835 3.508744 CGGGCAGCATTTTACTTTCAT 57.491 42.857 0.00 0.00 0.00 2.57
970 2880 7.387119 AGGATTTTACTTTCCGATAACCAAC 57.613 36.000 0.00 0.00 37.10 3.77
971 2881 7.173032 AGGATTTTACTTTCCGATAACCAACT 58.827 34.615 0.00 0.00 37.10 3.16
972 2882 7.336176 AGGATTTTACTTTCCGATAACCAACTC 59.664 37.037 0.00 0.00 37.10 3.01
973 2883 6.806388 TTTTACTTTCCGATAACCAACTCC 57.194 37.500 0.00 0.00 0.00 3.85
981 2891 0.541863 ATAACCAACTCCGAGCCCAG 59.458 55.000 0.00 0.00 0.00 4.45
1139 3064 4.609018 CGCCCGCCGATGGATCTT 62.609 66.667 0.00 0.00 40.02 2.40
1429 3630 1.915769 ACACTGGTGAGCCCCTCTC 60.916 63.158 7.78 0.00 42.23 3.20
1446 3647 2.144730 TCTCCTCGCTCGATTAGTAGC 58.855 52.381 0.00 0.00 35.33 3.58
1462 3663 3.737702 AGCTTCCGCTGGGTTTTTA 57.262 47.368 0.00 0.00 46.86 1.52
1509 3710 9.974980 GTTTTTGGAACTATTTGATGTTTAGGA 57.025 29.630 0.00 0.00 0.00 2.94
1524 3725 4.202419 TGTTTAGGACCAGTGTGTTGCTAT 60.202 41.667 0.00 0.00 0.00 2.97
1616 3818 1.756538 CTGTTTGGTGTTCTGGGCTTT 59.243 47.619 0.00 0.00 0.00 3.51
1796 4016 5.520751 ACTTCTAGCATGAACTACCTACCT 58.479 41.667 0.00 0.00 0.00 3.08
1820 4041 1.159285 TTCAAGGTTCTGCTGATGCG 58.841 50.000 0.00 0.00 43.34 4.73
1959 4180 0.582005 GTGACTCGTCCAACACTTGC 59.418 55.000 0.00 0.00 0.00 4.01
2032 4253 0.867753 GGACACTGACGATAGCTGCG 60.868 60.000 8.96 8.96 42.67 5.18
2076 4297 5.130975 TGGGAAGACATCACTACATAATGCT 59.869 40.000 0.00 0.00 30.45 3.79
2082 4303 4.577693 ACATCACTACATAATGCTGCAAGG 59.422 41.667 6.36 0.00 0.00 3.61
2130 4351 0.335019 TCATTGAGAGAGACCCGGGA 59.665 55.000 32.02 0.00 0.00 5.14
2166 4387 2.239907 AGATAGGAAGGGACAAACTGCC 59.760 50.000 0.00 0.00 33.47 4.85
2317 4538 4.411212 GGCCCCAGGTATACTTCTTTTCTA 59.589 45.833 2.25 0.00 0.00 2.10
2368 4589 7.223584 TGTATCTTCTCCTGTTTGTTTGATCA 58.776 34.615 0.00 0.00 0.00 2.92
2474 4695 1.074775 CCACCTTGGGCTACTGCAA 59.925 57.895 0.00 0.00 41.91 4.08
2533 4754 7.973601 TGTAACATATACTCACAGTTGCAATG 58.026 34.615 0.59 4.87 33.13 2.82
2548 4769 8.263640 ACAGTTGCAATGACTAAGATCTTCTAT 58.736 33.333 12.24 0.00 0.00 1.98
2592 4813 5.698545 GCAGTTATATTTAGCCTGAGACTGG 59.301 44.000 0.00 0.00 34.21 4.00
2738 4961 5.801380 TGAGTAACTCCATACTTTCCCAAC 58.199 41.667 0.00 0.00 36.28 3.77
2765 4988 7.568199 AACATATATATATTTCGGGCAAGGC 57.432 36.000 2.28 0.00 0.00 4.35
2831 5054 1.000827 TGTAGCAAAAATGTGTGCCCG 60.001 47.619 0.00 0.00 41.88 6.13
3004 5231 9.319143 ACACATAGCATTACTCTTCTACATTTC 57.681 33.333 0.00 0.00 0.00 2.17
3036 5264 3.607422 TCGTGTGTGAAATGAAAGCTG 57.393 42.857 0.00 0.00 0.00 4.24
3045 5273 1.915614 AATGAAAGCTGCCGAGTGCG 61.916 55.000 0.00 0.00 45.60 5.34
3060 5288 4.472286 CGAGTGCGGTTACAAATTTGATT 58.528 39.130 24.64 5.87 0.00 2.57
3084 5312 8.603242 TTTAGTTTGTCTAAGTGCTTTCTAGG 57.397 34.615 0.00 0.00 39.42 3.02
3148 5377 0.615850 AGCAAAGAGGTAGGGACAGC 59.384 55.000 0.00 0.00 0.00 4.40
3242 5472 5.511234 CCTTCATGGGAGATTCATTGTTC 57.489 43.478 0.00 0.00 0.00 3.18
3255 5485 2.158885 TCATTGTTCCCACGTGAACTGA 60.159 45.455 19.30 11.79 43.96 3.41
3258 5488 3.755112 TGTTCCCACGTGAACTGATAA 57.245 42.857 19.30 0.00 43.96 1.75
3297 5527 7.880160 TTATGTCCTAGCATGCTTTGTTAAT 57.120 32.000 28.02 14.84 0.00 1.40
3385 5616 5.592054 CTCGCCTATGATTCACTTGAAGTA 58.408 41.667 0.00 0.00 37.48 2.24
3391 5622 7.420800 CCTATGATTCACTTGAAGTAAATGCC 58.579 38.462 0.00 0.00 37.48 4.40
3456 5687 5.735766 AGTTCCCTATGCTGAGTCTAAAAC 58.264 41.667 0.00 0.00 0.00 2.43
3526 5757 2.285756 TGTTGGTAAAGTTGACGAAGCG 59.714 45.455 0.00 0.00 0.00 4.68
3565 5796 4.692625 ACTGTGAGTGATATCAAGCACAAC 59.307 41.667 27.87 14.72 44.60 3.32
3718 5949 1.340465 CTCCATCGCGTTCGTTTCG 59.660 57.895 5.77 0.00 36.96 3.46
3755 5986 1.204941 GCCAGTACTACCAGGACACTG 59.795 57.143 0.00 0.56 44.51 3.66
3775 6006 3.917760 CACGGGGGAGAGATCGGC 61.918 72.222 0.00 0.00 0.00 5.54
3808 6039 3.239253 AAGCTCACCGGGTTCCGT 61.239 61.111 6.32 0.00 46.80 4.69
4168 6399 0.900647 CCTTCTCCTGGTCTGTCCGT 60.901 60.000 0.00 0.00 39.52 4.69
4234 6465 6.382570 AGAAGATCTATGCTTTGTAGTCCTGT 59.617 38.462 0.00 0.00 0.00 4.00
4257 6488 0.027979 CGCGGCATGTAACATTGAGG 59.972 55.000 0.00 0.00 0.00 3.86
4330 6562 4.866508 TTAGGTCTGTGTTGAGGTACAG 57.133 45.455 0.00 0.00 44.31 2.74
4354 6586 1.742268 GCAGACCTTTCTCTGGAATGC 59.258 52.381 0.00 0.00 38.54 3.56
4474 6706 0.183492 TGCTGAAACTGTTGGCCTCT 59.817 50.000 3.32 0.00 0.00 3.69
4475 6707 0.595095 GCTGAAACTGTTGGCCTCTG 59.405 55.000 3.32 4.08 0.00 3.35
4696 6930 2.561956 GGCCTACTCTCGCGGCATA 61.562 63.158 6.13 0.00 45.53 3.14
4697 6931 1.587054 GCCTACTCTCGCGGCATAT 59.413 57.895 6.13 0.00 43.25 1.78
4956 7190 1.800586 GTGTTGATGCTTTCGAGCTGA 59.199 47.619 0.00 0.00 35.49 4.26
5086 7321 3.828023 ACCCCCGTTTGGCCAACT 61.828 61.111 20.35 0.00 32.53 3.16
5136 7371 2.395654 GCCAACCACGCGAAAAATTTA 58.604 42.857 15.93 0.00 0.00 1.40
5398 7633 1.493871 CATCATCTTGGAGGGCTTCCT 59.506 52.381 17.30 0.00 46.92 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.078709 ATCAGTGTCAAATGGTCGCG 58.921 50.000 0.00 0.00 0.00 5.87
55 56 4.095483 GTCATCCATCAGTGTCAAATGGTC 59.905 45.833 8.10 0.00 40.69 4.02
56 57 4.012374 GTCATCCATCAGTGTCAAATGGT 58.988 43.478 8.10 0.00 40.69 3.55
69 70 2.576615 GGGGCAAAGTAGTCATCCATC 58.423 52.381 0.00 0.00 0.00 3.51
75 76 0.539986 GATCGGGGGCAAAGTAGTCA 59.460 55.000 0.00 0.00 0.00 3.41
81 82 1.452108 GAGTGGATCGGGGGCAAAG 60.452 63.158 0.00 0.00 0.00 2.77
91 92 1.323271 TGGTCAGCGGAGAGTGGATC 61.323 60.000 0.00 0.00 0.00 3.36
94 95 0.036010 AAATGGTCAGCGGAGAGTGG 60.036 55.000 0.00 0.00 0.00 4.00
101 102 0.447801 CCGAAGAAAATGGTCAGCGG 59.552 55.000 0.00 0.00 32.62 5.52
104 105 1.156736 ACGCCGAAGAAAATGGTCAG 58.843 50.000 0.00 0.00 0.00 3.51
106 107 2.581637 GAAACGCCGAAGAAAATGGTC 58.418 47.619 0.00 0.00 0.00 4.02
169 170 5.424252 AGAACCCAATCGAACAATAGGACTA 59.576 40.000 0.00 0.00 0.00 2.59
170 171 4.225267 AGAACCCAATCGAACAATAGGACT 59.775 41.667 0.00 0.00 0.00 3.85
182 183 6.392625 TCTGATAACTAGAGAACCCAATCG 57.607 41.667 0.00 0.00 0.00 3.34
244 245 2.856089 CGTCCTACGAATCAGCGAC 58.144 57.895 0.00 0.00 46.05 5.19
279 280 1.089112 CATCTCCGCATGTGCTTTCA 58.911 50.000 0.00 0.00 39.32 2.69
282 283 0.036105 TGACATCTCCGCATGTGCTT 60.036 50.000 0.00 0.00 37.11 3.91
293 294 2.421424 GCAAACCTGACCATGACATCTC 59.579 50.000 0.00 0.00 0.00 2.75
317 318 0.681564 AAACACCTCAACCACGGCAA 60.682 50.000 0.00 0.00 0.00 4.52
320 321 2.140717 GTCTAAACACCTCAACCACGG 58.859 52.381 0.00 0.00 0.00 4.94
347 348 1.517242 CACAGTTGGTTCTCTCTGGC 58.483 55.000 0.00 0.00 32.92 4.85
350 351 1.131638 TGCCACAGTTGGTTCTCTCT 58.868 50.000 0.00 0.00 45.98 3.10
352 353 2.435372 TTTGCCACAGTTGGTTCTCT 57.565 45.000 0.00 0.00 45.98 3.10
370 371 3.964031 AGATTGAAGAGCCTCTCGGTATT 59.036 43.478 0.00 0.00 35.36 1.89
375 376 3.516981 TTGAGATTGAAGAGCCTCTCG 57.483 47.619 0.00 0.00 37.53 4.04
395 398 0.838987 TCGGGCCACCCTCTTACTTT 60.839 55.000 4.39 0.00 42.67 2.66
399 402 0.254747 CAAATCGGGCCACCCTCTTA 59.745 55.000 4.39 0.00 42.67 2.10
426 429 5.064198 CCTTTTCAATGCATGCAGTTAATGG 59.936 40.000 26.69 22.77 0.00 3.16
428 431 6.040209 TCCTTTTCAATGCATGCAGTTAAT 57.960 33.333 26.69 5.62 0.00 1.40
431 434 4.339872 TTCCTTTTCAATGCATGCAGTT 57.660 36.364 26.69 16.59 0.00 3.16
461 464 8.055279 TGATATTTTCCTTGTAAAGCCTTCAG 57.945 34.615 0.00 0.00 44.44 3.02
464 467 7.890655 ACTCTGATATTTTCCTTGTAAAGCCTT 59.109 33.333 0.00 0.00 44.44 4.35
478 481 8.897752 GGCTTCTTAACATGACTCTGATATTTT 58.102 33.333 0.00 0.00 0.00 1.82
479 482 8.049117 TGGCTTCTTAACATGACTCTGATATTT 58.951 33.333 0.00 0.00 0.00 1.40
485 488 4.154918 GGTTGGCTTCTTAACATGACTCTG 59.845 45.833 0.00 0.00 0.00 3.35
488 491 4.098914 TGGTTGGCTTCTTAACATGACT 57.901 40.909 0.00 0.00 0.00 3.41
511 514 4.232221 GTGATGCAACTGTTTCCAGAATG 58.768 43.478 0.00 0.00 41.50 2.67
517 520 2.297033 ACCATGTGATGCAACTGTTTCC 59.703 45.455 0.00 0.00 0.00 3.13
521 524 2.574006 AGACCATGTGATGCAACTGT 57.426 45.000 0.00 0.00 0.00 3.55
537 540 3.062042 CCAAAGAAAGCATGCCAAAGAC 58.938 45.455 15.66 0.41 0.00 3.01
539 542 1.802365 GCCAAAGAAAGCATGCCAAAG 59.198 47.619 15.66 0.00 0.00 2.77
540 543 1.417145 AGCCAAAGAAAGCATGCCAAA 59.583 42.857 15.66 0.00 0.00 3.28
541 544 1.050204 AGCCAAAGAAAGCATGCCAA 58.950 45.000 15.66 0.00 0.00 4.52
542 545 1.050204 AAGCCAAAGAAAGCATGCCA 58.950 45.000 15.66 0.00 0.00 4.92
543 546 1.435577 CAAGCCAAAGAAAGCATGCC 58.564 50.000 15.66 0.00 0.00 4.40
544 547 0.794473 GCAAGCCAAAGAAAGCATGC 59.206 50.000 10.51 10.51 45.03 4.06
545 548 1.270412 TGGCAAGCCAAAGAAAGCATG 60.270 47.619 12.11 0.00 44.12 4.06
546 549 1.050204 TGGCAAGCCAAAGAAAGCAT 58.950 45.000 12.11 0.00 44.12 3.79
547 550 2.514129 TGGCAAGCCAAAGAAAGCA 58.486 47.368 12.11 0.00 44.12 3.91
600 603 3.153919 GGTTGGCTTCTTAACATGACCA 58.846 45.455 0.00 0.00 0.00 4.02
608 611 9.693739 TTCTTAATATGATGGTTGGCTTCTTAA 57.306 29.630 0.00 0.00 0.00 1.85
609 612 9.342308 CTTCTTAATATGATGGTTGGCTTCTTA 57.658 33.333 0.00 0.00 0.00 2.10
610 613 7.286316 CCTTCTTAATATGATGGTTGGCTTCTT 59.714 37.037 1.44 0.00 0.00 2.52
611 614 6.774656 CCTTCTTAATATGATGGTTGGCTTCT 59.225 38.462 1.44 0.00 0.00 2.85
612 615 6.515696 GCCTTCTTAATATGATGGTTGGCTTC 60.516 42.308 8.98 0.00 33.07 3.86
613 616 5.302823 GCCTTCTTAATATGATGGTTGGCTT 59.697 40.000 8.98 0.00 33.07 4.35
614 617 4.829492 GCCTTCTTAATATGATGGTTGGCT 59.171 41.667 8.98 0.00 33.07 4.75
615 618 4.829492 AGCCTTCTTAATATGATGGTTGGC 59.171 41.667 8.98 0.00 36.11 4.52
616 619 6.966534 AAGCCTTCTTAATATGATGGTTGG 57.033 37.500 8.98 0.00 33.07 3.77
617 620 8.902806 TGTAAAGCCTTCTTAATATGATGGTTG 58.097 33.333 8.98 0.00 33.07 3.77
618 621 9.474313 TTGTAAAGCCTTCTTAATATGATGGTT 57.526 29.630 8.98 2.19 33.07 3.67
619 622 9.125026 CTTGTAAAGCCTTCTTAATATGATGGT 57.875 33.333 8.98 0.00 36.98 3.55
620 623 8.571336 CCTTGTAAAGCCTTCTTAATATGATGG 58.429 37.037 4.39 4.39 44.44 3.51
621 624 8.078596 GCCTTGTAAAGCCTTCTTAATATGATG 58.921 37.037 0.00 0.00 44.44 3.07
622 625 7.231519 GGCCTTGTAAAGCCTTCTTAATATGAT 59.768 37.037 0.00 0.00 44.44 2.45
623 626 6.546034 GGCCTTGTAAAGCCTTCTTAATATGA 59.454 38.462 0.00 0.00 44.44 2.15
624 627 6.513393 CGGCCTTGTAAAGCCTTCTTAATATG 60.513 42.308 0.00 0.00 44.44 1.78
625 628 5.531287 CGGCCTTGTAAAGCCTTCTTAATAT 59.469 40.000 0.00 0.00 44.44 1.28
626 629 4.879545 CGGCCTTGTAAAGCCTTCTTAATA 59.120 41.667 0.00 0.00 44.44 0.98
627 630 3.694566 CGGCCTTGTAAAGCCTTCTTAAT 59.305 43.478 0.00 0.00 44.44 1.40
666 669 1.149174 CAGGAGGCCGCCATACAAT 59.851 57.895 28.68 1.94 0.00 2.71
683 686 0.950555 GGTTCGCAGACACAGATGCA 60.951 55.000 0.00 0.00 42.68 3.96
697 700 1.642037 TACGGACAGAGAGCGGTTCG 61.642 60.000 0.00 0.00 45.15 3.95
715 720 4.487714 AATTTTCTCCTGCATCCGTCTA 57.512 40.909 0.00 0.00 0.00 2.59
726 731 1.886542 GTGACCCGCAAATTTTCTCCT 59.113 47.619 0.00 0.00 0.00 3.69
728 733 1.611491 TGGTGACCCGCAAATTTTCTC 59.389 47.619 0.00 0.00 0.00 2.87
729 734 1.698506 TGGTGACCCGCAAATTTTCT 58.301 45.000 0.00 0.00 0.00 2.52
734 739 0.327924 TCTCATGGTGACCCGCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
745 750 2.837947 TGTCAGGGAATCTCTCATGGT 58.162 47.619 0.00 0.00 0.00 3.55
751 756 7.405292 TCAATTAAACATGTCAGGGAATCTCT 58.595 34.615 0.00 0.00 0.00 3.10
762 767 7.805071 CCTTCACTGTTCTCAATTAAACATGTC 59.195 37.037 0.00 0.00 35.03 3.06
775 780 3.438434 GCCTGATTTCCTTCACTGTTCTC 59.562 47.826 0.00 0.00 0.00 2.87
776 781 3.181440 TGCCTGATTTCCTTCACTGTTCT 60.181 43.478 0.00 0.00 0.00 3.01
934 2842 4.508662 AGTAAAATCCTTCCGCTCAGAAG 58.491 43.478 0.00 0.00 42.46 2.85
943 2852 6.600427 TGGTTATCGGAAAGTAAAATCCTTCC 59.400 38.462 0.00 0.00 33.36 3.46
1429 3630 2.350964 GGAAGCTACTAATCGAGCGAGG 60.351 54.545 0.00 0.00 43.72 4.63
1446 3647 2.095919 CGTTCTAAAAACCCAGCGGAAG 60.096 50.000 0.00 0.00 0.00 3.46
1462 3663 0.034059 CACTGGACTTGGCTCGTTCT 59.966 55.000 0.00 0.00 0.00 3.01
1507 3708 5.897377 AAAATATAGCAACACACTGGTCC 57.103 39.130 0.00 0.00 0.00 4.46
1509 3710 6.180472 AGCTAAAATATAGCAACACACTGGT 58.820 36.000 9.85 0.00 42.68 4.00
1524 3725 1.133792 GCCCTGGGCTGAGCTAAAATA 60.134 52.381 30.42 0.00 46.69 1.40
1553 3754 1.364171 CCTAATCTGGCCGAGGTCG 59.636 63.158 0.00 0.00 39.44 4.79
1616 3818 1.998285 CGCAATCGATCGAACTGCA 59.002 52.632 35.16 13.66 37.07 4.41
1820 4041 3.282021 TCCTCATTGAACAATAGCTGCC 58.718 45.455 0.00 0.00 0.00 4.85
1860 4081 7.121168 TGGAAAGCAATTTATCAGTCTACTTGG 59.879 37.037 0.00 0.00 0.00 3.61
1959 4180 1.078848 GGCAGCAGAGTACAGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
2076 4297 1.691976 CGATGGTACCCTATCCTTGCA 59.308 52.381 10.07 0.00 0.00 4.08
2082 4303 3.244078 TGACAATGCGATGGTACCCTATC 60.244 47.826 10.07 5.78 0.00 2.08
2121 4342 0.178975 TTGCAACAATTCCCGGGTCT 60.179 50.000 22.86 5.99 0.00 3.85
2130 4351 7.325694 CCTTCCTATCTTTGATTGCAACAATT 58.674 34.615 0.00 0.00 32.79 2.32
2317 4538 6.874664 TGCAATGTGCTCATCATGTAATTTTT 59.125 30.769 1.01 0.00 45.31 1.94
2368 4589 8.893560 TCTAAGTAAGGTAGGGTTAACCAAAAT 58.106 33.333 25.71 10.94 43.89 1.82
2422 4643 9.665264 GTTGAAAAGGGCGATTAAGAATATAAG 57.335 33.333 0.00 0.00 0.00 1.73
2430 4651 4.022329 AGGTTGTTGAAAAGGGCGATTAAG 60.022 41.667 0.00 0.00 0.00 1.85
2434 4655 1.613437 CAGGTTGTTGAAAAGGGCGAT 59.387 47.619 0.00 0.00 0.00 4.58
2437 4658 0.249868 GGCAGGTTGTTGAAAAGGGC 60.250 55.000 0.00 0.00 0.00 5.19
2439 4660 1.118838 TGGGCAGGTTGTTGAAAAGG 58.881 50.000 0.00 0.00 0.00 3.11
2513 4734 6.915544 AGTCATTGCAACTGTGAGTATATG 57.084 37.500 0.00 0.00 0.00 1.78
2548 4769 8.792830 AACTGCAGAAATTTTACAGCTCTATA 57.207 30.769 23.35 0.00 31.46 1.31
2592 4813 9.378551 TCAAAGTGGTATGACATCAACTAATAC 57.621 33.333 0.00 0.00 0.00 1.89
2643 4864 8.782339 TGGCTGTCATTGTCTCATATATAATG 57.218 34.615 0.00 0.00 0.00 1.90
2738 4961 8.761497 CCTTGCCCGAAATATATATATGTTACG 58.239 37.037 6.00 9.17 0.00 3.18
2765 4988 0.613260 TACCAGGCACTAGCAAGGTG 59.387 55.000 11.64 0.00 45.35 4.00
2774 4997 2.848678 TACTCCATCTACCAGGCACT 57.151 50.000 0.00 0.00 43.88 4.40
2807 5030 3.490526 GGCACACATTTTTGCTACACTTG 59.509 43.478 0.00 0.00 38.85 3.16
2831 5054 5.431765 AGTGTTCCATCCTTCATATGTGAC 58.568 41.667 1.90 0.00 33.11 3.67
2949 5176 5.291128 CGATCTTAGCTTCACGGTTATTTGT 59.709 40.000 0.00 0.00 0.00 2.83
2959 5186 3.854809 GTGTGTCTCGATCTTAGCTTCAC 59.145 47.826 0.00 0.00 0.00 3.18
2961 5188 4.098055 TGTGTGTCTCGATCTTAGCTTC 57.902 45.455 0.00 0.00 0.00 3.86
3004 5231 2.094234 TCACACACGATACCACTGGATG 60.094 50.000 0.71 0.00 0.00 3.51
3060 5288 7.656137 CACCTAGAAAGCACTTAGACAAACTAA 59.344 37.037 0.00 0.00 38.56 2.24
3084 5312 6.127980 GGGGCAGTAGAAAACTAGAAAATCAC 60.128 42.308 0.00 0.00 35.76 3.06
3125 5354 2.708861 TGTCCCTACCTCTTTGCTTTGA 59.291 45.455 0.00 0.00 0.00 2.69
3130 5359 0.615850 AGCTGTCCCTACCTCTTTGC 59.384 55.000 0.00 0.00 0.00 3.68
3148 5377 7.763528 ACAAATCTCACAGCTTTAGTAGATCAG 59.236 37.037 0.00 0.00 0.00 2.90
3242 5472 6.254281 AGAAAAATTATCAGTTCACGTGGG 57.746 37.500 17.00 3.43 0.00 4.61
3255 5485 7.339466 AGGACATAAAGCACCGAGAAAAATTAT 59.661 33.333 0.00 0.00 0.00 1.28
3258 5488 5.010282 AGGACATAAAGCACCGAGAAAAAT 58.990 37.500 0.00 0.00 0.00 1.82
3297 5527 9.905713 ATGGCAGAGAAATATAAAGTTGTTAGA 57.094 29.630 0.00 0.00 0.00 2.10
3331 5562 5.994250 TGAACCATCTAGAGATCCCAAAAG 58.006 41.667 0.00 0.00 31.21 2.27
3339 5570 5.424895 AGCAGAAGTTGAACCATCTAGAGAT 59.575 40.000 0.00 0.00 34.56 2.75
3344 5575 3.849911 CGAGCAGAAGTTGAACCATCTA 58.150 45.455 1.56 0.00 0.00 1.98
3385 5616 6.266168 TCGTTTTGACTATTGATGGCATTT 57.734 33.333 0.00 0.00 0.00 2.32
3391 5622 6.373779 AGCTGTTTCGTTTTGACTATTGATG 58.626 36.000 0.00 0.00 0.00 3.07
3456 5687 0.933097 CAGCCACTCGATGATTTCCG 59.067 55.000 0.00 0.00 0.00 4.30
3526 5757 3.508012 TCACAGTTCTCCTTAGCTCTGAC 59.492 47.826 0.00 0.00 31.91 3.51
3565 5796 2.249535 ACTGAGCTGTGCTTGCACG 61.250 57.895 18.99 14.71 39.88 5.34
3718 5949 1.034292 GGCCTGGCAGGTTGAAGATC 61.034 60.000 32.80 14.50 37.80 2.75
3755 5986 1.437986 CGATCTCTCCCCCGTGTTC 59.562 63.158 0.00 0.00 0.00 3.18
3756 5987 2.058595 CCGATCTCTCCCCCGTGTT 61.059 63.158 0.00 0.00 0.00 3.32
3758 5989 3.917760 GCCGATCTCTCCCCCGTG 61.918 72.222 0.00 0.00 0.00 4.94
3775 6006 1.620819 AGCTTGGATATGTAGGCCTCG 59.379 52.381 9.68 0.00 0.00 4.63
3808 6039 0.249868 CGTTCAGGAGGCAGAACACA 60.250 55.000 0.00 0.00 43.20 3.72
4006 6237 2.508526 GATATGGTGAAGGCCATCCAC 58.491 52.381 5.01 9.64 45.47 4.02
4099 6330 4.373116 TGCCTGTCCTCGCCGAAC 62.373 66.667 0.00 0.00 0.00 3.95
4168 6399 1.752198 CAGGTCCGACAACCCTTCA 59.248 57.895 0.00 0.00 40.42 3.02
4257 6488 2.370849 TGTTTCCTCCCAACTACCTGTC 59.629 50.000 0.00 0.00 0.00 3.51
4330 6562 1.294659 CCAGAGAAAGGTCTGCGTGC 61.295 60.000 0.00 0.00 42.40 5.34
4403 6635 2.986979 TCGCTGCACCGGTAGACA 60.987 61.111 6.87 5.23 0.00 3.41
4474 6706 4.666412 TCCCACCAGGATTTTATTCACA 57.334 40.909 0.00 0.00 40.93 3.58
4599 6833 7.912778 TTTCCCCCTCTTAATTAATGAATGG 57.087 36.000 0.00 0.00 0.00 3.16
4696 6930 6.041296 GGTGCAAAGAAATTGGGATCTATCAT 59.959 38.462 0.00 0.00 39.54 2.45
4697 6931 5.360714 GGTGCAAAGAAATTGGGATCTATCA 59.639 40.000 0.00 0.00 39.54 2.15
4735 6969 6.183360 GCTAACATCAAGATTGAGGCTCAAAT 60.183 38.462 31.57 20.84 42.28 2.32
4927 7161 4.498009 CGAAAGCATCAACACTTCCACTTT 60.498 41.667 0.00 0.00 0.00 2.66
4956 7190 6.872585 TGGGAAATGATAAAAGATTGGCTT 57.127 33.333 0.00 0.00 38.88 4.35
5086 7321 0.252696 AGGGTATGGACTGCTGACCA 60.253 55.000 16.22 16.22 41.75 4.02
5218 7453 2.159382 CGGGATTTACAGTGCCAAGTT 58.841 47.619 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.