Multiple sequence alignment - TraesCS6D01G276700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G276700 chr6D 100.000 3334 0 0 1 3334 385634284 385637617 0.000000e+00 6157.0
1 TraesCS6D01G276700 chr6D 76.559 401 58 15 1988 2359 385467215 385466822 1.580000e-43 187.0
2 TraesCS6D01G276700 chr6D 86.555 119 14 2 1877 1994 385467426 385467309 2.700000e-26 130.0
3 TraesCS6D01G276700 chr6A 90.454 2179 120 41 459 2596 530088383 530090514 0.000000e+00 2791.0
4 TraesCS6D01G276700 chr6A 86.693 511 50 15 2639 3146 530090518 530091013 4.860000e-153 551.0
5 TraesCS6D01G276700 chr6A 86.552 290 31 4 1 282 71709306 71709595 2.500000e-81 313.0
6 TraesCS6D01G276700 chr6A 75.806 620 93 30 918 1522 529609391 529608814 9.170000e-66 261.0
7 TraesCS6D01G276700 chr6A 88.268 179 17 4 281 458 71709626 71709801 9.370000e-51 211.0
8 TraesCS6D01G276700 chr6A 76.633 398 64 14 1988 2359 529605948 529605554 3.390000e-45 193.0
9 TraesCS6D01G276700 chr6A 89.623 106 9 2 1887 1991 529606151 529606047 2.090000e-27 134.0
10 TraesCS6D01G276700 chr6B 90.167 1200 49 32 459 1618 575924845 575926015 0.000000e+00 1498.0
11 TraesCS6D01G276700 chr6B 91.692 999 64 12 1643 2637 575926190 575927173 0.000000e+00 1367.0
12 TraesCS6D01G276700 chr6B 87.291 299 23 9 2934 3230 575936141 575936426 8.920000e-86 327.0
13 TraesCS6D01G276700 chr6B 77.215 632 84 34 918 1522 575379896 575379298 6.940000e-82 315.0
14 TraesCS6D01G276700 chr6B 86.598 291 29 6 1 282 715322719 715322430 2.500000e-81 313.0
15 TraesCS6D01G276700 chr6B 82.595 316 38 9 2634 2945 575935533 575935835 2.550000e-66 263.0
16 TraesCS6D01G276700 chr6B 77.591 357 54 11 1988 2323 575378390 575378039 3.390000e-45 193.0
17 TraesCS6D01G276700 chr6B 88.350 103 10 2 1890 1991 575378591 575378490 4.520000e-24 122.0
18 TraesCS6D01G276700 chr3D 95.464 463 13 4 1 462 118415371 118415826 0.000000e+00 732.0
19 TraesCS6D01G276700 chr5B 81.489 497 49 17 1 458 10131556 10132048 5.250000e-98 368.0
20 TraesCS6D01G276700 chr5B 80.730 493 55 19 3 458 160145835 160145346 6.850000e-92 348.0
21 TraesCS6D01G276700 chr5D 82.578 419 51 16 2833 3247 195652549 195652949 1.900000e-92 350.0
22 TraesCS6D01G276700 chr5D 89.205 176 17 1 282 457 37642460 37642633 5.600000e-53 219.0
23 TraesCS6D01G276700 chr1D 82.160 426 51 17 2831 3247 240611441 240611032 3.190000e-90 342.0
24 TraesCS6D01G276700 chr1D 79.419 413 57 19 2832 3239 175763664 175763275 1.970000e-67 267.0
25 TraesCS6D01G276700 chr1D 79.391 427 51 25 65 458 342188684 342189106 1.970000e-67 267.0
26 TraesCS6D01G276700 chr7D 83.113 379 42 15 2837 3207 288465460 288465096 3.210000e-85 326.0
27 TraesCS6D01G276700 chr7D 80.095 422 56 24 2832 3247 266385311 266384912 4.210000e-74 289.0
28 TraesCS6D01G276700 chr5A 81.384 419 57 15 2833 3247 232836199 232836600 4.150000e-84 322.0
29 TraesCS6D01G276700 chr1A 87.857 280 25 4 1 272 63856316 63856594 1.490000e-83 320.0
30 TraesCS6D01G276700 chrUn 85.467 289 31 7 1 282 43088052 43088336 1.170000e-74 291.0
31 TraesCS6D01G276700 chrUn 85.467 289 31 7 1 282 262834908 262835192 1.170000e-74 291.0
32 TraesCS6D01G276700 chrUn 85.467 289 31 7 1 282 306193772 306193488 1.170000e-74 291.0
33 TraesCS6D01G276700 chr2A 85.467 289 30 8 1 282 160041791 160042074 1.170000e-74 291.0
34 TraesCS6D01G276700 chr2A 79.419 413 66 18 2833 3241 307688595 307688992 1.180000e-69 274.0
35 TraesCS6D01G276700 chr2A 87.222 180 14 6 281 452 160042105 160042283 2.620000e-46 196.0
36 TraesCS6D01G276700 chr4B 86.264 182 17 4 281 461 571834418 571834592 1.220000e-44 191.0
37 TraesCS6D01G276700 chr1B 85.629 167 20 2 292 458 145572222 145572060 4.420000e-39 172.0
38 TraesCS6D01G276700 chr4A 97.297 37 1 0 3 39 614364279 614364315 2.780000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G276700 chr6D 385634284 385637617 3333 False 6157.0 6157 100.0000 1 3334 1 chr6D.!!$F1 3333
1 TraesCS6D01G276700 chr6A 530088383 530091013 2630 False 1671.0 2791 88.5735 459 3146 2 chr6A.!!$F2 2687
2 TraesCS6D01G276700 chr6B 575924845 575927173 2328 False 1432.5 1498 90.9295 459 2637 2 chr6B.!!$F1 2178
3 TraesCS6D01G276700 chr6B 575935533 575936426 893 False 295.0 327 84.9430 2634 3230 2 chr6B.!!$F2 596
4 TraesCS6D01G276700 chr6B 575378039 575379896 1857 True 210.0 315 81.0520 918 2323 3 chr6B.!!$R2 1405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.032130 GTCAGCAGTCCTGTGTTCGA 59.968 55.0 0.0 0.0 42.38 3.71 F
430 431 0.038343 GCGAAAGGGCAGCATTTTGA 60.038 50.0 11.9 0.0 0.00 2.69 F
437 438 0.039256 GGCAGCATTTTGACGCAGAA 60.039 50.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2826 0.111253 CCTCCTTCCTGTTGGCAGTT 59.889 55.000 0.00 0.0 41.02 3.16 R
2165 2912 0.317603 CGGAGTTAGCCGTCGGTATG 60.318 60.000 13.94 0.0 46.07 2.39 R
2401 3191 1.728971 GGACAACTCATGCTCAACGAG 59.271 52.381 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.506296 AAAACTGTTCTTGCTTTAGAAAACG 57.494 32.000 0.00 0.00 36.01 3.60
64 65 5.169836 ACTGTTCTTGCTTTAGAAAACGG 57.830 39.130 0.00 0.00 36.01 4.44
65 66 4.638865 ACTGTTCTTGCTTTAGAAAACGGT 59.361 37.500 0.00 0.00 36.01 4.83
66 67 5.124936 ACTGTTCTTGCTTTAGAAAACGGTT 59.875 36.000 0.00 0.00 36.01 4.44
67 68 5.575019 TGTTCTTGCTTTAGAAAACGGTTC 58.425 37.500 0.00 0.00 36.01 3.62
68 69 5.124138 TGTTCTTGCTTTAGAAAACGGTTCA 59.876 36.000 0.00 0.00 36.01 3.18
69 70 5.164606 TCTTGCTTTAGAAAACGGTTCAC 57.835 39.130 0.00 0.00 0.00 3.18
70 71 4.636648 TCTTGCTTTAGAAAACGGTTCACA 59.363 37.500 0.00 0.00 0.00 3.58
71 72 4.966965 TGCTTTAGAAAACGGTTCACAA 57.033 36.364 0.00 0.00 0.00 3.33
72 73 5.312120 TGCTTTAGAAAACGGTTCACAAA 57.688 34.783 0.00 0.00 0.00 2.83
73 74 5.897050 TGCTTTAGAAAACGGTTCACAAAT 58.103 33.333 0.00 0.00 0.00 2.32
74 75 6.334202 TGCTTTAGAAAACGGTTCACAAATT 58.666 32.000 0.00 0.00 0.00 1.82
75 76 6.474102 TGCTTTAGAAAACGGTTCACAAATTC 59.526 34.615 0.00 0.00 0.00 2.17
76 77 6.695713 GCTTTAGAAAACGGTTCACAAATTCT 59.304 34.615 7.98 7.98 0.00 2.40
77 78 7.305993 GCTTTAGAAAACGGTTCACAAATTCTG 60.306 37.037 11.54 0.35 0.00 3.02
78 79 5.828299 AGAAAACGGTTCACAAATTCTGA 57.172 34.783 0.00 0.00 0.00 3.27
79 80 6.202516 AGAAAACGGTTCACAAATTCTGAA 57.797 33.333 0.00 0.00 0.00 3.02
80 81 6.626302 AGAAAACGGTTCACAAATTCTGAAA 58.374 32.000 0.00 0.00 29.44 2.69
81 82 7.093992 AGAAAACGGTTCACAAATTCTGAAAA 58.906 30.769 0.00 0.00 29.44 2.29
82 83 7.763985 AGAAAACGGTTCACAAATTCTGAAAAT 59.236 29.630 0.00 0.00 29.44 1.82
83 84 6.826893 AACGGTTCACAAATTCTGAAAATG 57.173 33.333 0.00 0.00 29.44 2.32
84 85 5.901552 ACGGTTCACAAATTCTGAAAATGT 58.098 33.333 0.00 0.00 29.44 2.71
85 86 6.337356 ACGGTTCACAAATTCTGAAAATGTT 58.663 32.000 8.24 0.00 29.44 2.71
86 87 6.475402 ACGGTTCACAAATTCTGAAAATGTTC 59.525 34.615 8.24 0.00 29.44 3.18
87 88 6.475076 CGGTTCACAAATTCTGAAAATGTTCA 59.525 34.615 0.00 0.00 41.57 3.18
88 89 7.169645 CGGTTCACAAATTCTGAAAATGTTCAT 59.830 33.333 0.00 0.00 42.85 2.57
89 90 9.474920 GGTTCACAAATTCTGAAAATGTTCATA 57.525 29.630 0.00 0.00 42.85 2.15
115 116 7.757097 TTTCGAAAAACATTTCGGAAATTCA 57.243 28.000 19.72 0.68 45.63 2.57
116 117 8.186178 TTTCGAAAAACATTTCGGAAATTCAA 57.814 26.923 19.72 5.96 45.63 2.69
117 118 8.656849 TTTCGAAAAACATTTCGGAAATTCAAA 58.343 25.926 19.72 10.51 45.63 2.69
125 126 9.715123 AACATTTCGGAAATTCAAAATTTGTTC 57.285 25.926 13.09 2.73 0.00 3.18
126 127 9.108284 ACATTTCGGAAATTCAAAATTTGTTCT 57.892 25.926 13.09 0.00 0.00 3.01
127 128 9.934190 CATTTCGGAAATTCAAAATTTGTTCTT 57.066 25.926 13.09 0.00 0.00 2.52
128 129 9.934190 ATTTCGGAAATTCAAAATTTGTTCTTG 57.066 25.926 10.11 1.28 0.00 3.02
129 130 8.709386 TTCGGAAATTCAAAATTTGTTCTTGA 57.291 26.923 5.56 3.27 0.00 3.02
130 131 8.885494 TCGGAAATTCAAAATTTGTTCTTGAT 57.115 26.923 5.56 0.00 0.00 2.57
131 132 9.973450 TCGGAAATTCAAAATTTGTTCTTGATA 57.027 25.926 5.56 0.00 0.00 2.15
160 161 6.826893 AAATTGTTTCCTCATGTGAAAACG 57.173 33.333 12.53 0.00 33.80 3.60
161 162 5.766150 ATTGTTTCCTCATGTGAAAACGA 57.234 34.783 12.53 8.02 33.80 3.85
162 163 5.568685 TTGTTTCCTCATGTGAAAACGAA 57.431 34.783 12.53 3.71 33.80 3.85
163 164 5.568685 TGTTTCCTCATGTGAAAACGAAA 57.431 34.783 12.53 4.20 33.80 3.46
164 165 6.142818 TGTTTCCTCATGTGAAAACGAAAT 57.857 33.333 12.53 0.00 33.80 2.17
165 166 6.205784 TGTTTCCTCATGTGAAAACGAAATC 58.794 36.000 12.53 3.05 33.80 2.17
166 167 4.661993 TCCTCATGTGAAAACGAAATCG 57.338 40.909 0.48 0.48 46.33 3.34
180 181 4.316375 CGAAATCGTACGTTCCAAATGT 57.684 40.909 16.05 0.00 34.11 2.71
181 182 5.438821 CGAAATCGTACGTTCCAAATGTA 57.561 39.130 16.05 0.00 34.11 2.29
182 183 5.478001 CGAAATCGTACGTTCCAAATGTAG 58.522 41.667 16.05 0.00 33.78 2.74
183 184 5.061311 CGAAATCGTACGTTCCAAATGTAGT 59.939 40.000 16.05 0.00 33.78 2.73
184 185 6.400303 CGAAATCGTACGTTCCAAATGTAGTT 60.400 38.462 16.05 0.00 33.78 2.24
185 186 7.201342 CGAAATCGTACGTTCCAAATGTAGTTA 60.201 37.037 16.05 0.00 33.78 2.24
186 187 7.887996 AATCGTACGTTCCAAATGTAGTTAA 57.112 32.000 16.05 0.00 33.78 2.01
187 188 7.887996 ATCGTACGTTCCAAATGTAGTTAAA 57.112 32.000 16.05 0.00 33.78 1.52
188 189 7.706281 TCGTACGTTCCAAATGTAGTTAAAA 57.294 32.000 16.05 0.00 33.78 1.52
189 190 8.309163 TCGTACGTTCCAAATGTAGTTAAAAT 57.691 30.769 16.05 0.00 33.78 1.82
190 191 8.772705 TCGTACGTTCCAAATGTAGTTAAAATT 58.227 29.630 16.05 0.00 33.78 1.82
191 192 9.384682 CGTACGTTCCAAATGTAGTTAAAATTT 57.615 29.630 7.22 0.00 33.78 1.82
216 217 9.672673 TTGGAAAATTGTAAAGGATTTTGTTCA 57.327 25.926 0.00 0.00 40.09 3.18
217 218 9.672673 TGGAAAATTGTAAAGGATTTTGTTCAA 57.327 25.926 0.00 0.00 40.09 2.69
222 223 9.665719 AATTGTAAAGGATTTTGTTCAAACAGT 57.334 25.926 0.00 0.00 40.09 3.55
223 224 8.472683 TTGTAAAGGATTTTGTTCAAACAGTG 57.527 30.769 0.00 0.00 40.09 3.66
224 225 7.607250 TGTAAAGGATTTTGTTCAAACAGTGT 58.393 30.769 0.00 0.00 40.09 3.55
225 226 8.091449 TGTAAAGGATTTTGTTCAAACAGTGTT 58.909 29.630 1.64 1.64 40.09 3.32
226 227 9.575783 GTAAAGGATTTTGTTCAAACAGTGTTA 57.424 29.630 9.37 0.00 40.09 2.41
228 229 8.702163 AAGGATTTTGTTCAAACAGTGTTAAG 57.298 30.769 9.37 5.50 40.50 1.85
229 230 7.836842 AGGATTTTGTTCAAACAGTGTTAAGT 58.163 30.769 9.37 0.00 40.50 2.24
230 231 7.973944 AGGATTTTGTTCAAACAGTGTTAAGTC 59.026 33.333 9.37 5.09 40.50 3.01
231 232 7.973944 GGATTTTGTTCAAACAGTGTTAAGTCT 59.026 33.333 9.37 0.00 40.50 3.24
232 233 9.353999 GATTTTGTTCAAACAGTGTTAAGTCTT 57.646 29.630 9.37 0.00 40.50 3.01
237 238 9.826574 TGTTCAAACAGTGTTAAGTCTTATACT 57.173 29.630 9.37 0.00 35.59 2.12
265 266 9.444600 TCTTTAGTTCTTATAATTTTCCGCTGT 57.555 29.630 0.00 0.00 0.00 4.40
277 278 7.391148 AATTTTCCGCTGTATAATGTCAACT 57.609 32.000 0.00 0.00 0.00 3.16
278 279 5.794687 TTTCCGCTGTATAATGTCAACTG 57.205 39.130 0.00 0.00 0.00 3.16
279 280 4.729227 TCCGCTGTATAATGTCAACTGA 57.271 40.909 0.00 0.00 0.00 3.41
280 281 4.682787 TCCGCTGTATAATGTCAACTGAG 58.317 43.478 0.00 0.00 0.00 3.35
281 282 3.246226 CCGCTGTATAATGTCAACTGAGC 59.754 47.826 0.00 0.00 0.00 4.26
282 283 3.865164 CGCTGTATAATGTCAACTGAGCA 59.135 43.478 0.00 0.00 0.00 4.26
283 284 4.259970 CGCTGTATAATGTCAACTGAGCAC 60.260 45.833 0.00 0.00 0.00 4.40
284 285 4.631377 GCTGTATAATGTCAACTGAGCACA 59.369 41.667 0.00 0.00 0.00 4.57
285 286 5.122239 GCTGTATAATGTCAACTGAGCACAA 59.878 40.000 0.00 0.00 0.00 3.33
286 287 6.674037 GCTGTATAATGTCAACTGAGCACAAG 60.674 42.308 0.00 0.00 0.00 3.16
287 288 6.230472 TGTATAATGTCAACTGAGCACAAGT 58.770 36.000 0.00 0.00 0.00 3.16
288 289 5.869753 ATAATGTCAACTGAGCACAAGTC 57.130 39.130 0.00 0.00 0.00 3.01
289 290 2.689553 TGTCAACTGAGCACAAGTCA 57.310 45.000 0.00 0.00 0.00 3.41
290 291 2.554142 TGTCAACTGAGCACAAGTCAG 58.446 47.619 0.00 0.00 45.94 3.51
291 292 1.262683 GTCAACTGAGCACAAGTCAGC 59.737 52.381 0.10 0.00 44.60 4.26
292 293 1.134431 TCAACTGAGCACAAGTCAGCA 60.134 47.619 0.10 0.00 44.60 4.41
293 294 1.263484 CAACTGAGCACAAGTCAGCAG 59.737 52.381 0.10 0.00 44.60 4.24
294 295 0.467384 ACTGAGCACAAGTCAGCAGT 59.533 50.000 0.10 0.00 44.60 4.40
295 296 1.146637 CTGAGCACAAGTCAGCAGTC 58.853 55.000 0.00 0.00 35.33 3.51
296 297 0.250038 TGAGCACAAGTCAGCAGTCC 60.250 55.000 0.00 0.00 0.00 3.85
297 298 0.034616 GAGCACAAGTCAGCAGTCCT 59.965 55.000 0.00 0.00 0.00 3.85
298 299 0.250209 AGCACAAGTCAGCAGTCCTG 60.250 55.000 0.00 0.00 43.17 3.86
299 300 0.533755 GCACAAGTCAGCAGTCCTGT 60.534 55.000 0.00 0.00 42.38 4.00
300 301 1.224075 CACAAGTCAGCAGTCCTGTG 58.776 55.000 0.00 0.00 42.38 3.66
301 302 0.833287 ACAAGTCAGCAGTCCTGTGT 59.167 50.000 0.00 0.00 42.38 3.72
302 303 1.210478 ACAAGTCAGCAGTCCTGTGTT 59.790 47.619 0.00 0.00 42.38 3.32
303 304 1.869767 CAAGTCAGCAGTCCTGTGTTC 59.130 52.381 0.00 0.00 42.38 3.18
304 305 0.032678 AGTCAGCAGTCCTGTGTTCG 59.967 55.000 0.00 0.00 42.38 3.95
305 306 0.032130 GTCAGCAGTCCTGTGTTCGA 59.968 55.000 0.00 0.00 42.38 3.71
306 307 0.969149 TCAGCAGTCCTGTGTTCGAT 59.031 50.000 0.00 0.00 42.38 3.59
307 308 1.344438 TCAGCAGTCCTGTGTTCGATT 59.656 47.619 0.00 0.00 42.38 3.34
308 309 1.728971 CAGCAGTCCTGTGTTCGATTC 59.271 52.381 0.00 0.00 36.79 2.52
309 310 1.079503 GCAGTCCTGTGTTCGATTCC 58.920 55.000 0.00 0.00 0.00 3.01
310 311 1.726853 CAGTCCTGTGTTCGATTCCC 58.273 55.000 0.00 0.00 0.00 3.97
311 312 1.001974 CAGTCCTGTGTTCGATTCCCA 59.998 52.381 0.00 0.00 0.00 4.37
312 313 1.909302 AGTCCTGTGTTCGATTCCCAT 59.091 47.619 0.00 0.00 0.00 4.00
313 314 2.093447 AGTCCTGTGTTCGATTCCCATC 60.093 50.000 0.00 0.00 0.00 3.51
314 315 1.209504 TCCTGTGTTCGATTCCCATCC 59.790 52.381 0.00 0.00 0.00 3.51
315 316 1.065491 CCTGTGTTCGATTCCCATCCA 60.065 52.381 0.00 0.00 0.00 3.41
316 317 2.009774 CTGTGTTCGATTCCCATCCAC 58.990 52.381 0.00 0.00 0.00 4.02
317 318 1.339631 TGTGTTCGATTCCCATCCACC 60.340 52.381 0.00 0.00 0.00 4.61
318 319 0.988063 TGTTCGATTCCCATCCACCA 59.012 50.000 0.00 0.00 0.00 4.17
319 320 1.339631 TGTTCGATTCCCATCCACCAC 60.340 52.381 0.00 0.00 0.00 4.16
320 321 0.988063 TTCGATTCCCATCCACCACA 59.012 50.000 0.00 0.00 0.00 4.17
321 322 0.251916 TCGATTCCCATCCACCACAC 59.748 55.000 0.00 0.00 0.00 3.82
322 323 0.748005 CGATTCCCATCCACCACACC 60.748 60.000 0.00 0.00 0.00 4.16
323 324 0.395724 GATTCCCATCCACCACACCC 60.396 60.000 0.00 0.00 0.00 4.61
324 325 0.850883 ATTCCCATCCACCACACCCT 60.851 55.000 0.00 0.00 0.00 4.34
325 326 1.071314 TTCCCATCCACCACACCCTT 61.071 55.000 0.00 0.00 0.00 3.95
326 327 1.071314 TCCCATCCACCACACCCTTT 61.071 55.000 0.00 0.00 0.00 3.11
327 328 0.701731 CCCATCCACCACACCCTTTA 59.298 55.000 0.00 0.00 0.00 1.85
328 329 1.287739 CCCATCCACCACACCCTTTAT 59.712 52.381 0.00 0.00 0.00 1.40
329 330 2.292192 CCCATCCACCACACCCTTTATT 60.292 50.000 0.00 0.00 0.00 1.40
330 331 3.440127 CCATCCACCACACCCTTTATTT 58.560 45.455 0.00 0.00 0.00 1.40
331 332 3.837731 CCATCCACCACACCCTTTATTTT 59.162 43.478 0.00 0.00 0.00 1.82
332 333 4.285775 CCATCCACCACACCCTTTATTTTT 59.714 41.667 0.00 0.00 0.00 1.94
357 358 8.845413 TTTTTGCAATATTTCACCTGCTATTT 57.155 26.923 0.00 0.00 35.78 1.40
358 359 8.845413 TTTTGCAATATTTCACCTGCTATTTT 57.155 26.923 0.00 0.00 35.78 1.82
359 360 8.477984 TTTGCAATATTTCACCTGCTATTTTC 57.522 30.769 0.00 0.00 35.78 2.29
360 361 6.264832 TGCAATATTTCACCTGCTATTTTCG 58.735 36.000 0.00 0.00 35.78 3.46
361 362 5.687285 GCAATATTTCACCTGCTATTTTCGG 59.313 40.000 0.00 0.00 0.00 4.30
362 363 3.782889 ATTTCACCTGCTATTTTCGGC 57.217 42.857 0.00 0.00 0.00 5.54
363 364 1.083489 TTCACCTGCTATTTTCGGCG 58.917 50.000 0.00 0.00 0.00 6.46
364 365 1.062525 CACCTGCTATTTTCGGCGC 59.937 57.895 0.00 0.00 0.00 6.53
365 366 1.376683 ACCTGCTATTTTCGGCGCA 60.377 52.632 10.83 0.00 0.00 6.09
366 367 1.062525 CCTGCTATTTTCGGCGCAC 59.937 57.895 10.83 0.00 0.00 5.34
367 368 1.369091 CCTGCTATTTTCGGCGCACT 61.369 55.000 10.83 0.00 0.00 4.40
368 369 0.247814 CTGCTATTTTCGGCGCACTG 60.248 55.000 10.83 0.00 0.00 3.66
369 370 1.583709 GCTATTTTCGGCGCACTGC 60.584 57.895 10.83 0.00 45.38 4.40
411 412 3.842126 CGCGATGACGTGCCTGTG 61.842 66.667 0.00 0.00 42.78 3.66
412 413 4.152625 GCGATGACGTGCCTGTGC 62.153 66.667 0.00 0.00 41.98 4.57
413 414 3.842126 CGATGACGTGCCTGTGCG 61.842 66.667 0.00 0.00 41.78 5.34
414 415 2.432456 GATGACGTGCCTGTGCGA 60.432 61.111 0.00 0.00 41.78 5.10
415 416 2.027073 GATGACGTGCCTGTGCGAA 61.027 57.895 0.00 0.00 41.78 4.70
416 417 1.565156 GATGACGTGCCTGTGCGAAA 61.565 55.000 0.00 0.00 41.78 3.46
417 418 1.568612 ATGACGTGCCTGTGCGAAAG 61.569 55.000 0.00 0.00 41.78 2.62
418 419 2.954753 GACGTGCCTGTGCGAAAGG 61.955 63.158 0.00 0.00 41.78 3.11
419 420 3.726517 CGTGCCTGTGCGAAAGGG 61.727 66.667 0.00 0.00 41.78 3.95
420 421 4.043200 GTGCCTGTGCGAAAGGGC 62.043 66.667 1.21 1.21 44.31 5.19
422 423 3.741476 GCCTGTGCGAAAGGGCAG 61.741 66.667 3.25 0.00 44.93 4.85
423 424 3.741476 CCTGTGCGAAAGGGCAGC 61.741 66.667 0.00 0.00 44.93 5.25
424 425 2.979676 CTGTGCGAAAGGGCAGCA 60.980 61.111 0.00 0.00 44.93 4.41
425 426 2.282391 TGTGCGAAAGGGCAGCAT 60.282 55.556 0.00 0.00 44.93 3.79
426 427 1.870055 CTGTGCGAAAGGGCAGCATT 61.870 55.000 0.00 0.00 44.93 3.56
427 428 1.290009 GTGCGAAAGGGCAGCATTT 59.710 52.632 0.00 0.00 44.93 2.32
428 429 0.319813 GTGCGAAAGGGCAGCATTTT 60.320 50.000 0.00 0.00 44.93 1.82
429 430 0.319727 TGCGAAAGGGCAGCATTTTG 60.320 50.000 0.00 0.00 38.17 2.44
430 431 0.038343 GCGAAAGGGCAGCATTTTGA 60.038 50.000 11.90 0.00 0.00 2.69
431 432 1.701704 CGAAAGGGCAGCATTTTGAC 58.298 50.000 0.00 0.00 0.00 3.18
432 433 1.701704 GAAAGGGCAGCATTTTGACG 58.298 50.000 0.00 0.00 0.00 4.35
433 434 0.319813 AAAGGGCAGCATTTTGACGC 60.320 50.000 0.00 0.00 0.00 5.19
434 435 1.462731 AAGGGCAGCATTTTGACGCA 61.463 50.000 0.00 0.00 0.00 5.24
435 436 1.444895 GGGCAGCATTTTGACGCAG 60.445 57.895 0.00 0.00 0.00 5.18
436 437 1.580942 GGCAGCATTTTGACGCAGA 59.419 52.632 0.00 0.00 0.00 4.26
437 438 0.039256 GGCAGCATTTTGACGCAGAA 60.039 50.000 0.00 0.00 0.00 3.02
438 439 1.055338 GCAGCATTTTGACGCAGAAC 58.945 50.000 0.00 0.00 0.00 3.01
451 452 2.417339 GCAGAACGCGTCATATAGGA 57.583 50.000 14.44 0.00 0.00 2.94
452 453 2.739292 GCAGAACGCGTCATATAGGAA 58.261 47.619 14.44 0.00 0.00 3.36
453 454 3.318017 GCAGAACGCGTCATATAGGAAT 58.682 45.455 14.44 0.00 0.00 3.01
454 455 3.741344 GCAGAACGCGTCATATAGGAATT 59.259 43.478 14.44 0.00 0.00 2.17
455 456 4.143305 GCAGAACGCGTCATATAGGAATTC 60.143 45.833 14.44 0.82 0.00 2.17
456 457 4.386049 CAGAACGCGTCATATAGGAATTCC 59.614 45.833 14.44 17.31 0.00 3.01
457 458 3.314541 ACGCGTCATATAGGAATTCCC 57.685 47.619 21.22 2.75 36.42 3.97
507 513 6.751888 GCATGGAAAATAGCTAACGTTCAATT 59.248 34.615 2.82 0.00 0.00 2.32
707 717 0.657840 GCAGCGTATCTGGCGATTTT 59.342 50.000 0.00 0.00 43.06 1.82
978 1018 2.021457 GAGAGAGAAAGGGTCGAGAGG 58.979 57.143 0.00 0.00 0.00 3.69
1109 1154 4.104183 GATGGTTTCCGGCCGGGA 62.104 66.667 42.36 35.17 45.40 5.14
1110 1155 3.415650 GATGGTTTCCGGCCGGGAT 62.416 63.158 42.36 25.31 46.62 3.85
1166 1211 8.564574 TCTGTTTGAATTGTTAACTTATTCGCT 58.435 29.630 19.71 0.00 32.30 4.93
1330 1394 1.550065 CGTCGATCACGCATCTTCTT 58.450 50.000 5.07 0.00 42.87 2.52
1347 1411 2.286127 CTTCTCCGCTCCCCTCGTTC 62.286 65.000 0.00 0.00 0.00 3.95
1558 1633 2.031314 TGCCCAACACGCGTACAT 59.969 55.556 13.44 0.00 0.00 2.29
1618 1693 5.910355 TCCATGTCAAATATCATCAGGGA 57.090 39.130 0.00 0.00 36.79 4.20
1619 1694 6.458630 TCCATGTCAAATATCATCAGGGAT 57.541 37.500 0.00 0.00 34.76 3.85
1620 1695 6.855667 TCCATGTCAAATATCATCAGGGATT 58.144 36.000 0.00 0.00 34.76 3.01
1621 1696 6.944290 TCCATGTCAAATATCATCAGGGATTC 59.056 38.462 0.00 0.00 34.76 2.52
1622 1697 6.717997 CCATGTCAAATATCATCAGGGATTCA 59.282 38.462 0.00 0.00 32.70 2.57
1623 1698 7.094334 CCATGTCAAATATCATCAGGGATTCAG 60.094 40.741 0.00 0.00 32.70 3.02
1624 1699 6.301486 TGTCAAATATCATCAGGGATTCAGG 58.699 40.000 0.00 0.00 0.00 3.86
1625 1700 5.709164 GTCAAATATCATCAGGGATTCAGGG 59.291 44.000 0.00 0.00 0.00 4.45
1706 1940 1.960689 GCTCCTCCAGTCTCCTCATAC 59.039 57.143 0.00 0.00 0.00 2.39
1708 1942 3.486383 CTCCTCCAGTCTCCTCATACTC 58.514 54.545 0.00 0.00 0.00 2.59
1709 1943 2.853077 TCCTCCAGTCTCCTCATACTCA 59.147 50.000 0.00 0.00 0.00 3.41
1711 1945 4.665483 TCCTCCAGTCTCCTCATACTCATA 59.335 45.833 0.00 0.00 0.00 2.15
1730 1964 4.994852 TCATAGTCAGTTAGTTTGGTGCAC 59.005 41.667 8.80 8.80 0.00 4.57
1876 2520 2.753452 CGTGGACACAGTACCTGATACT 59.247 50.000 3.12 0.00 45.61 2.12
1877 2521 3.943381 CGTGGACACAGTACCTGATACTA 59.057 47.826 3.12 0.00 42.62 1.82
1878 2522 4.201891 CGTGGACACAGTACCTGATACTAC 60.202 50.000 3.12 0.00 42.62 2.73
1885 2529 7.097192 ACACAGTACCTGATACTACAAACATG 58.903 38.462 0.00 0.00 42.62 3.21
2124 2871 8.406297 GGTGACTTCAAAGGATGGTAATAATTC 58.594 37.037 0.00 0.00 0.00 2.17
2342 3130 1.467342 GCTGGAAATTAACCGAGCGTT 59.533 47.619 0.00 0.00 38.57 4.84
2392 3182 9.416284 AGATGAAAATTGTACCCCGTATTATTT 57.584 29.630 0.00 0.00 0.00 1.40
2401 3191 2.621526 CCCCGTATTATTTGGGTCTTGC 59.378 50.000 0.00 0.00 41.63 4.01
2438 3228 9.575868 TGAGTTGTCCCTGTACAATTAAAATTA 57.424 29.630 0.00 0.00 41.18 1.40
2502 3295 0.674581 CCGTTGCTGCTTCTGATCCA 60.675 55.000 0.00 0.00 0.00 3.41
2503 3296 1.159285 CGTTGCTGCTTCTGATCCAA 58.841 50.000 0.00 0.00 0.00 3.53
2518 3311 4.575885 TGATCCAACGTTTTCTCCTAAGG 58.424 43.478 0.00 0.00 0.00 2.69
2527 3320 1.848652 TTCTCCTAAGGTCCTCGTGG 58.151 55.000 0.00 0.00 0.00 4.94
2623 3416 2.097466 CCTAGTTGCCCAGTTTATTGCG 59.903 50.000 0.00 0.00 0.00 4.85
2630 3423 1.602191 CCAGTTTATTGCGTTGCGTC 58.398 50.000 0.00 0.00 0.00 5.19
2664 3457 5.163405 GGATCAGCTGACTTGGTATTACAGA 60.163 44.000 20.97 0.00 0.00 3.41
2665 3458 5.939764 TCAGCTGACTTGGTATTACAGAT 57.060 39.130 13.74 0.00 0.00 2.90
2666 3459 6.299805 TCAGCTGACTTGGTATTACAGATT 57.700 37.500 13.74 0.00 0.00 2.40
2667 3460 6.711277 TCAGCTGACTTGGTATTACAGATTT 58.289 36.000 13.74 0.00 0.00 2.17
2668 3461 7.847096 TCAGCTGACTTGGTATTACAGATTTA 58.153 34.615 13.74 0.00 0.00 1.40
2669 3462 7.981789 TCAGCTGACTTGGTATTACAGATTTAG 59.018 37.037 13.74 0.00 0.00 1.85
2670 3463 7.981789 CAGCTGACTTGGTATTACAGATTTAGA 59.018 37.037 8.42 0.00 0.00 2.10
2671 3464 8.540388 AGCTGACTTGGTATTACAGATTTAGAA 58.460 33.333 0.00 0.00 0.00 2.10
2749 3546 7.143340 TCAATATTAGAATGCTGAGCAAATGC 58.857 34.615 12.69 0.00 43.62 3.56
2802 3600 2.340337 GCAGCAAATTGTTAGGGCAAG 58.660 47.619 0.00 0.00 0.00 4.01
2808 3606 7.524367 GCAGCAAATTGTTAGGGCAAGATATAT 60.524 37.037 0.00 0.00 0.00 0.86
2824 3622 7.337689 GCAAGATATATGTTTCAGGATGGCATA 59.662 37.037 0.00 0.00 36.16 3.14
2826 3624 8.975663 AGATATATGTTTCAGGATGGCATATG 57.024 34.615 0.00 2.59 37.14 1.78
2867 3666 3.174987 CCCAGGTCCACACACCCA 61.175 66.667 0.00 0.00 37.09 4.51
2869 3668 1.460255 CCAGGTCCACACACCCATT 59.540 57.895 0.00 0.00 37.09 3.16
2872 3671 2.489985 CCAGGTCCACACACCCATTTAA 60.490 50.000 0.00 0.00 37.09 1.52
2955 4072 1.748879 CCTGGGTGCCCATTGTACG 60.749 63.158 10.80 0.00 46.15 3.67
2964 4082 0.738389 CCCATTGTACGCCCATGTTC 59.262 55.000 0.00 0.00 0.00 3.18
3015 4133 1.334869 CTGTGGCGAAGGAAATATGGC 59.665 52.381 0.00 0.00 0.00 4.40
3044 4163 9.612620 GACATACGATCCATCCAAATATTTTTC 57.387 33.333 0.00 0.00 0.00 2.29
3054 4173 9.965824 CCATCCAAATATTTTTCCTATACACAC 57.034 33.333 0.00 0.00 0.00 3.82
3055 4174 9.663904 CATCCAAATATTTTTCCTATACACACG 57.336 33.333 0.00 0.00 0.00 4.49
3113 4232 0.970427 GCACCCATTCCCCACGAAAT 60.970 55.000 0.00 0.00 33.08 2.17
3133 4252 8.726068 ACGAAATTGAATACATGTGTACAATGA 58.274 29.630 19.13 8.01 31.67 2.57
3151 4270 3.281727 TGAGCACCCAGGTTTGATATC 57.718 47.619 0.00 0.00 0.00 1.63
3159 4278 4.265261 ACCCAGGTTTGATATCCCCAAAAT 60.265 41.667 0.00 0.00 35.57 1.82
3161 4280 5.191522 CCCAGGTTTGATATCCCCAAAATTT 59.808 40.000 0.00 0.00 35.57 1.82
3162 4281 6.348498 CCAGGTTTGATATCCCCAAAATTTC 58.652 40.000 0.00 0.00 35.57 2.17
3166 4285 6.070251 GGTTTGATATCCCCAAAATTTCCAGT 60.070 38.462 0.00 0.00 35.57 4.00
3167 4286 7.394016 GTTTGATATCCCCAAAATTTCCAGTT 58.606 34.615 0.00 0.00 35.57 3.16
3168 4287 7.566658 TTGATATCCCCAAAATTTCCAGTTT 57.433 32.000 0.00 0.00 0.00 2.66
3169 4288 7.566658 TGATATCCCCAAAATTTCCAGTTTT 57.433 32.000 0.00 0.00 0.00 2.43
3170 4289 7.983363 TGATATCCCCAAAATTTCCAGTTTTT 58.017 30.769 0.00 0.00 0.00 1.94
3230 4349 2.371841 TCATATAGGGATGTGTGGCACC 59.628 50.000 16.26 7.17 32.73 5.01
3231 4350 0.756294 TATAGGGATGTGTGGCACCG 59.244 55.000 16.26 0.00 32.73 4.94
3232 4351 0.980754 ATAGGGATGTGTGGCACCGA 60.981 55.000 16.26 1.09 32.73 4.69
3233 4352 1.613317 TAGGGATGTGTGGCACCGAG 61.613 60.000 16.26 0.00 32.73 4.63
3234 4353 2.662596 GGATGTGTGGCACCGAGA 59.337 61.111 16.26 0.00 32.73 4.04
3235 4354 1.448540 GGATGTGTGGCACCGAGAG 60.449 63.158 16.26 0.00 32.73 3.20
3236 4355 2.046892 ATGTGTGGCACCGAGAGC 60.047 61.111 16.26 0.00 32.73 4.09
3243 4362 3.987404 GCACCGAGAGCCACAAAT 58.013 55.556 0.00 0.00 0.00 2.32
3244 4363 1.796796 GCACCGAGAGCCACAAATC 59.203 57.895 0.00 0.00 0.00 2.17
3245 4364 1.648467 GCACCGAGAGCCACAAATCC 61.648 60.000 0.00 0.00 0.00 3.01
3246 4365 0.036010 CACCGAGAGCCACAAATCCT 60.036 55.000 0.00 0.00 0.00 3.24
3247 4366 1.207089 CACCGAGAGCCACAAATCCTA 59.793 52.381 0.00 0.00 0.00 2.94
3248 4367 1.906574 ACCGAGAGCCACAAATCCTAA 59.093 47.619 0.00 0.00 0.00 2.69
3249 4368 2.280628 CCGAGAGCCACAAATCCTAAC 58.719 52.381 0.00 0.00 0.00 2.34
3250 4369 2.280628 CGAGAGCCACAAATCCTAACC 58.719 52.381 0.00 0.00 0.00 2.85
3251 4370 2.644676 GAGAGCCACAAATCCTAACCC 58.355 52.381 0.00 0.00 0.00 4.11
3252 4371 1.992557 AGAGCCACAAATCCTAACCCA 59.007 47.619 0.00 0.00 0.00 4.51
3253 4372 2.582636 AGAGCCACAAATCCTAACCCAT 59.417 45.455 0.00 0.00 0.00 4.00
3254 4373 2.952310 GAGCCACAAATCCTAACCCATC 59.048 50.000 0.00 0.00 0.00 3.51
3255 4374 2.582636 AGCCACAAATCCTAACCCATCT 59.417 45.455 0.00 0.00 0.00 2.90
3256 4375 2.952310 GCCACAAATCCTAACCCATCTC 59.048 50.000 0.00 0.00 0.00 2.75
3257 4376 3.555966 CCACAAATCCTAACCCATCTCC 58.444 50.000 0.00 0.00 0.00 3.71
3258 4377 3.053693 CCACAAATCCTAACCCATCTCCA 60.054 47.826 0.00 0.00 0.00 3.86
3259 4378 4.386761 CCACAAATCCTAACCCATCTCCAT 60.387 45.833 0.00 0.00 0.00 3.41
3260 4379 4.581824 CACAAATCCTAACCCATCTCCATG 59.418 45.833 0.00 0.00 0.00 3.66
3274 4393 5.928839 CCATCTCCATGGTCTCTAATAAACG 59.071 44.000 12.58 0.00 44.46 3.60
3275 4394 6.239317 CCATCTCCATGGTCTCTAATAAACGA 60.239 42.308 12.58 0.00 44.46 3.85
3276 4395 6.785337 TCTCCATGGTCTCTAATAAACGAA 57.215 37.500 12.58 0.00 0.00 3.85
3277 4396 6.806751 TCTCCATGGTCTCTAATAAACGAAG 58.193 40.000 12.58 0.00 0.00 3.79
3279 4398 6.338146 TCCATGGTCTCTAATAAACGAAGTG 58.662 40.000 12.58 0.00 45.00 3.16
3280 4399 6.153851 TCCATGGTCTCTAATAAACGAAGTGA 59.846 38.462 12.58 0.00 45.00 3.41
3281 4400 6.255887 CCATGGTCTCTAATAAACGAAGTGAC 59.744 42.308 2.57 0.00 45.00 3.67
3282 4401 6.585695 TGGTCTCTAATAAACGAAGTGACT 57.414 37.500 0.00 0.00 45.00 3.41
3283 4402 6.618811 TGGTCTCTAATAAACGAAGTGACTC 58.381 40.000 0.00 0.00 45.00 3.36
3284 4403 6.208007 TGGTCTCTAATAAACGAAGTGACTCA 59.792 38.462 0.00 0.00 45.00 3.41
3285 4404 6.748198 GGTCTCTAATAAACGAAGTGACTCAG 59.252 42.308 0.00 0.00 45.00 3.35
3286 4405 6.251801 GTCTCTAATAAACGAAGTGACTCAGC 59.748 42.308 0.00 0.00 45.00 4.26
3287 4406 6.151312 TCTCTAATAAACGAAGTGACTCAGCT 59.849 38.462 0.00 0.00 45.00 4.24
3288 4407 7.336176 TCTCTAATAAACGAAGTGACTCAGCTA 59.664 37.037 0.00 0.00 45.00 3.32
3289 4408 7.997482 TCTAATAAACGAAGTGACTCAGCTAT 58.003 34.615 0.00 0.00 45.00 2.97
3290 4409 6.893958 AATAAACGAAGTGACTCAGCTATG 57.106 37.500 0.00 0.00 45.00 2.23
3291 4410 3.944055 AACGAAGTGACTCAGCTATGT 57.056 42.857 0.00 0.00 45.00 2.29
3292 4411 3.223423 ACGAAGTGACTCAGCTATGTG 57.777 47.619 0.00 0.00 42.51 3.21
3293 4412 2.094494 ACGAAGTGACTCAGCTATGTGG 60.094 50.000 0.00 0.00 42.51 4.17
3294 4413 2.094494 CGAAGTGACTCAGCTATGTGGT 60.094 50.000 0.00 0.00 0.00 4.16
3295 4414 3.516615 GAAGTGACTCAGCTATGTGGTC 58.483 50.000 0.00 0.00 33.87 4.02
3296 4415 2.813907 AGTGACTCAGCTATGTGGTCT 58.186 47.619 0.00 0.00 34.16 3.85
3297 4416 2.495270 AGTGACTCAGCTATGTGGTCTG 59.505 50.000 0.00 0.00 34.16 3.51
3298 4417 2.493675 GTGACTCAGCTATGTGGTCTGA 59.506 50.000 0.00 0.00 35.74 3.27
3299 4418 3.131933 GTGACTCAGCTATGTGGTCTGAT 59.868 47.826 0.00 0.00 36.41 2.90
3300 4419 3.771479 TGACTCAGCTATGTGGTCTGATT 59.229 43.478 0.00 0.00 36.41 2.57
3301 4420 4.223700 TGACTCAGCTATGTGGTCTGATTT 59.776 41.667 0.00 0.00 36.41 2.17
3302 4421 5.422012 TGACTCAGCTATGTGGTCTGATTTA 59.578 40.000 0.00 0.00 36.41 1.40
3303 4422 5.665459 ACTCAGCTATGTGGTCTGATTTAC 58.335 41.667 0.00 0.00 36.41 2.01
3304 4423 5.423610 ACTCAGCTATGTGGTCTGATTTACT 59.576 40.000 0.00 0.00 36.41 2.24
3305 4424 5.907207 TCAGCTATGTGGTCTGATTTACTC 58.093 41.667 0.00 0.00 32.48 2.59
3306 4425 4.742167 CAGCTATGTGGTCTGATTTACTCG 59.258 45.833 0.00 0.00 0.00 4.18
3307 4426 4.051922 GCTATGTGGTCTGATTTACTCGG 58.948 47.826 0.00 0.00 0.00 4.63
3308 4427 3.543680 ATGTGGTCTGATTTACTCGGG 57.456 47.619 0.00 0.00 0.00 5.14
3309 4428 1.553248 TGTGGTCTGATTTACTCGGGG 59.447 52.381 0.00 0.00 0.00 5.73
3310 4429 1.553704 GTGGTCTGATTTACTCGGGGT 59.446 52.381 0.00 0.00 0.00 4.95
3311 4430 2.027469 GTGGTCTGATTTACTCGGGGTT 60.027 50.000 0.00 0.00 0.00 4.11
3312 4431 2.027561 TGGTCTGATTTACTCGGGGTTG 60.028 50.000 0.00 0.00 0.00 3.77
3313 4432 2.235402 GGTCTGATTTACTCGGGGTTGA 59.765 50.000 0.00 0.00 0.00 3.18
3314 4433 3.522553 GTCTGATTTACTCGGGGTTGAG 58.477 50.000 0.00 0.00 41.86 3.02
3315 4434 3.194968 GTCTGATTTACTCGGGGTTGAGA 59.805 47.826 0.00 0.00 39.35 3.27
3316 4435 3.835978 TCTGATTTACTCGGGGTTGAGAA 59.164 43.478 0.00 0.00 39.35 2.87
3317 4436 4.285003 TCTGATTTACTCGGGGTTGAGAAA 59.715 41.667 0.00 0.00 39.35 2.52
3318 4437 5.045869 TCTGATTTACTCGGGGTTGAGAAAT 60.046 40.000 0.00 0.00 39.35 2.17
3319 4438 5.566469 TGATTTACTCGGGGTTGAGAAATT 58.434 37.500 0.00 0.00 39.35 1.82
3320 4439 6.007703 TGATTTACTCGGGGTTGAGAAATTT 58.992 36.000 0.00 0.00 39.35 1.82
3321 4440 6.492087 TGATTTACTCGGGGTTGAGAAATTTT 59.508 34.615 0.00 0.00 39.35 1.82
3322 4441 7.666388 TGATTTACTCGGGGTTGAGAAATTTTA 59.334 33.333 0.00 0.00 39.35 1.52
3323 4442 8.589701 ATTTACTCGGGGTTGAGAAATTTTAT 57.410 30.769 0.00 0.00 39.35 1.40
3324 4443 5.897377 ACTCGGGGTTGAGAAATTTTATG 57.103 39.130 0.00 0.00 39.35 1.90
3325 4444 5.321927 ACTCGGGGTTGAGAAATTTTATGT 58.678 37.500 0.00 0.00 39.35 2.29
3326 4445 5.183140 ACTCGGGGTTGAGAAATTTTATGTG 59.817 40.000 0.00 0.00 39.35 3.21
3327 4446 4.082463 TCGGGGTTGAGAAATTTTATGTGC 60.082 41.667 0.00 0.00 0.00 4.57
3328 4447 4.321601 CGGGGTTGAGAAATTTTATGTGCA 60.322 41.667 0.00 0.00 0.00 4.57
3329 4448 5.546526 GGGGTTGAGAAATTTTATGTGCAA 58.453 37.500 0.00 0.00 0.00 4.08
3330 4449 5.639082 GGGGTTGAGAAATTTTATGTGCAAG 59.361 40.000 0.00 0.00 0.00 4.01
3331 4450 5.639082 GGGTTGAGAAATTTTATGTGCAAGG 59.361 40.000 0.00 0.00 0.00 3.61
3332 4451 5.120674 GGTTGAGAAATTTTATGTGCAAGGC 59.879 40.000 0.00 0.00 0.00 4.35
3333 4452 5.465532 TGAGAAATTTTATGTGCAAGGCA 57.534 34.783 0.00 0.00 35.60 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.062956 CCGTTTTCTAAAGCAAGAACAGTTTTT 59.937 33.333 0.00 0.00 35.25 1.94
39 40 6.530181 CCGTTTTCTAAAGCAAGAACAGTTTT 59.470 34.615 0.00 0.00 35.25 2.43
40 41 6.033966 CCGTTTTCTAAAGCAAGAACAGTTT 58.966 36.000 0.00 0.00 35.25 2.66
41 42 5.124936 ACCGTTTTCTAAAGCAAGAACAGTT 59.875 36.000 0.00 0.00 35.25 3.16
42 43 4.638865 ACCGTTTTCTAAAGCAAGAACAGT 59.361 37.500 0.00 0.00 35.25 3.55
43 44 5.169836 ACCGTTTTCTAAAGCAAGAACAG 57.830 39.130 0.00 0.00 35.25 3.16
44 45 5.124138 TGAACCGTTTTCTAAAGCAAGAACA 59.876 36.000 0.00 0.00 35.25 3.18
45 46 5.454554 GTGAACCGTTTTCTAAAGCAAGAAC 59.545 40.000 0.00 0.00 35.25 3.01
46 47 5.124138 TGTGAACCGTTTTCTAAAGCAAGAA 59.876 36.000 0.00 0.00 33.69 2.52
47 48 4.636648 TGTGAACCGTTTTCTAAAGCAAGA 59.363 37.500 0.00 0.00 0.00 3.02
48 49 4.915704 TGTGAACCGTTTTCTAAAGCAAG 58.084 39.130 0.00 0.00 0.00 4.01
49 50 4.966965 TGTGAACCGTTTTCTAAAGCAA 57.033 36.364 0.00 0.00 0.00 3.91
50 51 4.966965 TTGTGAACCGTTTTCTAAAGCA 57.033 36.364 0.00 0.00 0.00 3.91
51 52 6.695713 AGAATTTGTGAACCGTTTTCTAAAGC 59.304 34.615 0.00 0.00 0.00 3.51
52 53 7.913297 TCAGAATTTGTGAACCGTTTTCTAAAG 59.087 33.333 0.00 0.00 0.00 1.85
53 54 7.763356 TCAGAATTTGTGAACCGTTTTCTAAA 58.237 30.769 0.00 0.00 0.00 1.85
54 55 7.323049 TCAGAATTTGTGAACCGTTTTCTAA 57.677 32.000 0.00 0.00 0.00 2.10
55 56 6.928979 TCAGAATTTGTGAACCGTTTTCTA 57.071 33.333 0.00 0.00 0.00 2.10
56 57 5.828299 TCAGAATTTGTGAACCGTTTTCT 57.172 34.783 0.00 0.00 0.00 2.52
57 58 6.879188 TTTCAGAATTTGTGAACCGTTTTC 57.121 33.333 8.37 0.00 33.63 2.29
58 59 7.333174 ACATTTTCAGAATTTGTGAACCGTTTT 59.667 29.630 8.37 0.00 33.63 2.43
59 60 6.816140 ACATTTTCAGAATTTGTGAACCGTTT 59.184 30.769 8.37 0.00 33.63 3.60
60 61 6.337356 ACATTTTCAGAATTTGTGAACCGTT 58.663 32.000 8.37 0.00 33.63 4.44
61 62 5.901552 ACATTTTCAGAATTTGTGAACCGT 58.098 33.333 8.37 4.14 33.63 4.83
62 63 6.475076 TGAACATTTTCAGAATTTGTGAACCG 59.525 34.615 8.37 3.60 36.79 4.44
63 64 7.769272 TGAACATTTTCAGAATTTGTGAACC 57.231 32.000 8.37 0.00 36.79 3.62
99 100 9.715123 GAACAAATTTTGAATTTCCGAAATGTT 57.285 25.926 15.81 5.47 32.16 2.71
100 101 9.108284 AGAACAAATTTTGAATTTCCGAAATGT 57.892 25.926 15.81 0.00 32.16 2.71
101 102 9.934190 AAGAACAAATTTTGAATTTCCGAAATG 57.066 25.926 15.81 0.00 32.16 2.32
102 103 9.934190 CAAGAACAAATTTTGAATTTCCGAAAT 57.066 25.926 15.81 0.17 32.91 2.17
103 104 9.155975 TCAAGAACAAATTTTGAATTTCCGAAA 57.844 25.926 15.81 0.00 0.00 3.46
104 105 8.709386 TCAAGAACAAATTTTGAATTTCCGAA 57.291 26.923 15.81 0.00 0.00 4.30
105 106 8.885494 ATCAAGAACAAATTTTGAATTTCCGA 57.115 26.923 15.81 8.85 34.80 4.55
134 135 8.977505 CGTTTTCACATGAGGAAACAATTTTAT 58.022 29.630 22.06 0.00 34.23 1.40
135 136 8.191446 TCGTTTTCACATGAGGAAACAATTTTA 58.809 29.630 22.06 4.20 34.23 1.52
136 137 7.038659 TCGTTTTCACATGAGGAAACAATTTT 58.961 30.769 22.06 0.00 34.23 1.82
137 138 6.568869 TCGTTTTCACATGAGGAAACAATTT 58.431 32.000 22.06 0.00 34.23 1.82
138 139 6.142818 TCGTTTTCACATGAGGAAACAATT 57.857 33.333 22.06 0.00 34.23 2.32
139 140 5.766150 TCGTTTTCACATGAGGAAACAAT 57.234 34.783 22.06 0.00 34.23 2.71
140 141 5.568685 TTCGTTTTCACATGAGGAAACAA 57.431 34.783 22.06 14.22 34.23 2.83
141 142 5.568685 TTTCGTTTTCACATGAGGAAACA 57.431 34.783 22.06 10.13 34.23 2.83
142 143 5.339611 CGATTTCGTTTTCACATGAGGAAAC 59.660 40.000 15.00 15.00 34.23 2.78
143 144 5.448438 CGATTTCGTTTTCACATGAGGAAA 58.552 37.500 0.00 6.46 32.74 3.13
144 145 5.029650 CGATTTCGTTTTCACATGAGGAA 57.970 39.130 0.00 0.00 34.11 3.36
145 146 4.661993 CGATTTCGTTTTCACATGAGGA 57.338 40.909 0.00 0.00 34.11 3.71
159 160 4.316375 ACATTTGGAACGTACGATTTCG 57.684 40.909 24.41 5.70 46.33 3.46
160 161 6.399204 ACTACATTTGGAACGTACGATTTC 57.601 37.500 24.41 15.77 0.00 2.17
161 162 6.790285 AACTACATTTGGAACGTACGATTT 57.210 33.333 24.41 6.54 0.00 2.17
162 163 7.887996 TTAACTACATTTGGAACGTACGATT 57.112 32.000 24.41 12.43 0.00 3.34
163 164 7.887996 TTTAACTACATTTGGAACGTACGAT 57.112 32.000 24.41 10.83 0.00 3.73
164 165 7.706281 TTTTAACTACATTTGGAACGTACGA 57.294 32.000 24.41 0.00 0.00 3.43
165 166 8.938047 AATTTTAACTACATTTGGAACGTACG 57.062 30.769 15.01 15.01 0.00 3.67
190 191 9.672673 TGAACAAAATCCTTTACAATTTTCCAA 57.327 25.926 0.00 0.00 33.86 3.53
191 192 9.672673 TTGAACAAAATCCTTTACAATTTTCCA 57.327 25.926 0.00 0.00 33.86 3.53
196 197 9.665719 ACTGTTTGAACAAAATCCTTTACAATT 57.334 25.926 1.47 0.00 38.66 2.32
197 198 9.097257 CACTGTTTGAACAAAATCCTTTACAAT 57.903 29.630 1.47 0.00 38.66 2.71
198 199 8.091449 ACACTGTTTGAACAAAATCCTTTACAA 58.909 29.630 1.47 0.00 38.66 2.41
199 200 7.607250 ACACTGTTTGAACAAAATCCTTTACA 58.393 30.769 1.47 0.00 38.66 2.41
200 201 8.474006 AACACTGTTTGAACAAAATCCTTTAC 57.526 30.769 1.47 0.00 38.66 2.01
202 203 9.150348 CTTAACACTGTTTGAACAAAATCCTTT 57.850 29.630 0.00 0.00 38.66 3.11
203 204 8.311109 ACTTAACACTGTTTGAACAAAATCCTT 58.689 29.630 0.00 0.00 38.66 3.36
204 205 7.836842 ACTTAACACTGTTTGAACAAAATCCT 58.163 30.769 0.00 0.00 38.66 3.24
205 206 7.973944 AGACTTAACACTGTTTGAACAAAATCC 59.026 33.333 0.00 0.00 38.66 3.01
206 207 8.911247 AGACTTAACACTGTTTGAACAAAATC 57.089 30.769 0.00 0.00 38.66 2.17
211 212 9.826574 AGTATAAGACTTAACACTGTTTGAACA 57.173 29.630 10.51 0.00 33.13 3.18
239 240 9.444600 ACAGCGGAAAATTATAAGAACTAAAGA 57.555 29.630 0.00 0.00 0.00 2.52
251 252 9.120538 AGTTGACATTATACAGCGGAAAATTAT 57.879 29.630 0.00 0.00 0.00 1.28
252 253 8.394877 CAGTTGACATTATACAGCGGAAAATTA 58.605 33.333 0.00 0.00 0.00 1.40
253 254 7.120579 TCAGTTGACATTATACAGCGGAAAATT 59.879 33.333 0.00 0.00 0.00 1.82
254 255 6.597672 TCAGTTGACATTATACAGCGGAAAAT 59.402 34.615 0.00 0.00 0.00 1.82
255 256 5.935206 TCAGTTGACATTATACAGCGGAAAA 59.065 36.000 0.00 0.00 0.00 2.29
256 257 5.483811 TCAGTTGACATTATACAGCGGAAA 58.516 37.500 0.00 0.00 0.00 3.13
257 258 5.079689 TCAGTTGACATTATACAGCGGAA 57.920 39.130 0.00 0.00 0.00 4.30
258 259 4.682787 CTCAGTTGACATTATACAGCGGA 58.317 43.478 0.00 0.00 0.00 5.54
259 260 3.246226 GCTCAGTTGACATTATACAGCGG 59.754 47.826 0.00 0.00 0.00 5.52
260 261 3.865164 TGCTCAGTTGACATTATACAGCG 59.135 43.478 0.00 0.00 0.00 5.18
261 262 4.631377 TGTGCTCAGTTGACATTATACAGC 59.369 41.667 0.00 0.00 0.00 4.40
262 263 6.369890 ACTTGTGCTCAGTTGACATTATACAG 59.630 38.462 0.00 0.00 0.00 2.74
263 264 6.230472 ACTTGTGCTCAGTTGACATTATACA 58.770 36.000 0.00 0.00 0.00 2.29
264 265 6.368791 TGACTTGTGCTCAGTTGACATTATAC 59.631 38.462 0.00 0.00 0.00 1.47
265 266 6.463360 TGACTTGTGCTCAGTTGACATTATA 58.537 36.000 0.00 0.00 0.00 0.98
266 267 5.308014 TGACTTGTGCTCAGTTGACATTAT 58.692 37.500 0.00 0.00 0.00 1.28
267 268 4.702831 TGACTTGTGCTCAGTTGACATTA 58.297 39.130 0.00 0.00 0.00 1.90
268 269 3.544684 TGACTTGTGCTCAGTTGACATT 58.455 40.909 0.00 0.00 0.00 2.71
269 270 3.136763 CTGACTTGTGCTCAGTTGACAT 58.863 45.455 0.00 0.00 31.99 3.06
270 271 2.554142 CTGACTTGTGCTCAGTTGACA 58.446 47.619 0.00 0.00 31.99 3.58
271 272 1.262683 GCTGACTTGTGCTCAGTTGAC 59.737 52.381 2.31 0.00 37.96 3.18
272 273 1.134431 TGCTGACTTGTGCTCAGTTGA 60.134 47.619 2.31 0.00 37.96 3.18
273 274 1.263484 CTGCTGACTTGTGCTCAGTTG 59.737 52.381 2.31 0.00 37.96 3.16
274 275 1.134280 ACTGCTGACTTGTGCTCAGTT 60.134 47.619 0.00 0.00 37.96 3.16
275 276 0.467384 ACTGCTGACTTGTGCTCAGT 59.533 50.000 0.00 0.00 37.96 3.41
276 277 1.146637 GACTGCTGACTTGTGCTCAG 58.853 55.000 0.00 0.00 38.59 3.35
277 278 0.250038 GGACTGCTGACTTGTGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
278 279 0.034616 AGGACTGCTGACTTGTGCTC 59.965 55.000 0.00 0.00 0.00 4.26
279 280 0.250209 CAGGACTGCTGACTTGTGCT 60.250 55.000 0.00 0.00 32.75 4.40
280 281 0.533755 ACAGGACTGCTGACTTGTGC 60.534 55.000 9.55 0.00 28.84 4.57
281 282 1.224075 CACAGGACTGCTGACTTGTG 58.776 55.000 19.10 19.10 38.79 3.33
282 283 0.833287 ACACAGGACTGCTGACTTGT 59.167 50.000 4.30 5.19 0.00 3.16
283 284 1.869767 GAACACAGGACTGCTGACTTG 59.130 52.381 4.30 0.21 0.00 3.16
284 285 1.539065 CGAACACAGGACTGCTGACTT 60.539 52.381 4.30 0.00 0.00 3.01
285 286 0.032678 CGAACACAGGACTGCTGACT 59.967 55.000 4.30 0.00 0.00 3.41
286 287 0.032130 TCGAACACAGGACTGCTGAC 59.968 55.000 4.30 0.00 0.00 3.51
287 288 0.969149 ATCGAACACAGGACTGCTGA 59.031 50.000 4.30 0.00 0.00 4.26
288 289 1.728971 GAATCGAACACAGGACTGCTG 59.271 52.381 0.00 0.00 0.00 4.41
289 290 1.338200 GGAATCGAACACAGGACTGCT 60.338 52.381 0.00 0.00 0.00 4.24
290 291 1.079503 GGAATCGAACACAGGACTGC 58.920 55.000 0.00 0.00 0.00 4.40
291 292 1.001974 TGGGAATCGAACACAGGACTG 59.998 52.381 0.00 0.00 0.00 3.51
292 293 1.348064 TGGGAATCGAACACAGGACT 58.652 50.000 0.00 0.00 0.00 3.85
293 294 2.280628 GATGGGAATCGAACACAGGAC 58.719 52.381 4.42 0.00 0.00 3.85
294 295 1.209504 GGATGGGAATCGAACACAGGA 59.790 52.381 4.42 0.00 0.00 3.86
295 296 1.065491 TGGATGGGAATCGAACACAGG 60.065 52.381 4.42 0.00 0.00 4.00
296 297 2.009774 GTGGATGGGAATCGAACACAG 58.990 52.381 4.42 0.00 0.00 3.66
297 298 1.339631 GGTGGATGGGAATCGAACACA 60.340 52.381 0.00 0.00 0.00 3.72
298 299 1.339631 TGGTGGATGGGAATCGAACAC 60.340 52.381 0.00 0.00 0.00 3.32
299 300 0.988063 TGGTGGATGGGAATCGAACA 59.012 50.000 0.00 0.00 0.00 3.18
300 301 1.339631 TGTGGTGGATGGGAATCGAAC 60.340 52.381 0.00 0.00 0.00 3.95
301 302 0.988063 TGTGGTGGATGGGAATCGAA 59.012 50.000 0.00 0.00 0.00 3.71
302 303 0.251916 GTGTGGTGGATGGGAATCGA 59.748 55.000 0.00 0.00 0.00 3.59
303 304 0.748005 GGTGTGGTGGATGGGAATCG 60.748 60.000 0.00 0.00 0.00 3.34
304 305 0.395724 GGGTGTGGTGGATGGGAATC 60.396 60.000 0.00 0.00 0.00 2.52
305 306 0.850883 AGGGTGTGGTGGATGGGAAT 60.851 55.000 0.00 0.00 0.00 3.01
306 307 1.071314 AAGGGTGTGGTGGATGGGAA 61.071 55.000 0.00 0.00 0.00 3.97
307 308 1.071314 AAAGGGTGTGGTGGATGGGA 61.071 55.000 0.00 0.00 0.00 4.37
308 309 0.701731 TAAAGGGTGTGGTGGATGGG 59.298 55.000 0.00 0.00 0.00 4.00
309 310 2.826674 ATAAAGGGTGTGGTGGATGG 57.173 50.000 0.00 0.00 0.00 3.51
310 311 5.482163 AAAAATAAAGGGTGTGGTGGATG 57.518 39.130 0.00 0.00 0.00 3.51
332 333 8.845413 AAATAGCAGGTGAAATATTGCAAAAA 57.155 26.923 1.71 0.00 38.97 1.94
333 334 8.845413 AAAATAGCAGGTGAAATATTGCAAAA 57.155 26.923 1.71 0.00 38.97 2.44
334 335 7.275341 CGAAAATAGCAGGTGAAATATTGCAAA 59.725 33.333 1.71 0.00 38.97 3.68
335 336 6.751425 CGAAAATAGCAGGTGAAATATTGCAA 59.249 34.615 0.00 0.00 38.97 4.08
336 337 6.264832 CGAAAATAGCAGGTGAAATATTGCA 58.735 36.000 0.00 0.00 38.97 4.08
337 338 5.687285 CCGAAAATAGCAGGTGAAATATTGC 59.313 40.000 0.00 0.00 36.83 3.56
338 339 5.687285 GCCGAAAATAGCAGGTGAAATATTG 59.313 40.000 0.00 0.00 0.00 1.90
339 340 5.505654 CGCCGAAAATAGCAGGTGAAATATT 60.506 40.000 0.00 0.00 36.43 1.28
340 341 4.024048 CGCCGAAAATAGCAGGTGAAATAT 60.024 41.667 0.00 0.00 36.43 1.28
341 342 3.311322 CGCCGAAAATAGCAGGTGAAATA 59.689 43.478 0.00 0.00 36.43 1.40
342 343 2.097466 CGCCGAAAATAGCAGGTGAAAT 59.903 45.455 0.00 0.00 36.43 2.17
343 344 1.466950 CGCCGAAAATAGCAGGTGAAA 59.533 47.619 0.00 0.00 36.43 2.69
344 345 1.083489 CGCCGAAAATAGCAGGTGAA 58.917 50.000 0.00 0.00 36.43 3.18
345 346 1.366111 GCGCCGAAAATAGCAGGTGA 61.366 55.000 0.00 0.00 36.43 4.02
346 347 1.062525 GCGCCGAAAATAGCAGGTG 59.937 57.895 0.00 0.00 37.33 4.00
347 348 1.376683 TGCGCCGAAAATAGCAGGT 60.377 52.632 4.18 0.00 34.39 4.00
348 349 1.062525 GTGCGCCGAAAATAGCAGG 59.937 57.895 4.18 0.00 40.53 4.85
349 350 0.247814 CAGTGCGCCGAAAATAGCAG 60.248 55.000 4.18 0.00 40.53 4.24
350 351 1.793581 CAGTGCGCCGAAAATAGCA 59.206 52.632 4.18 0.00 37.26 3.49
351 352 1.583709 GCAGTGCGCCGAAAATAGC 60.584 57.895 4.18 0.00 32.94 2.97
352 353 0.167908 TTGCAGTGCGCCGAAAATAG 59.832 50.000 11.20 0.00 41.33 1.73
353 354 0.808125 ATTGCAGTGCGCCGAAAATA 59.192 45.000 11.20 0.00 41.33 1.40
354 355 0.733566 CATTGCAGTGCGCCGAAAAT 60.734 50.000 11.20 0.14 41.33 1.82
355 356 1.371512 CATTGCAGTGCGCCGAAAA 60.372 52.632 11.20 0.00 41.33 2.29
356 357 2.254951 CATTGCAGTGCGCCGAAA 59.745 55.556 11.20 0.00 41.33 3.46
357 358 3.736100 CCATTGCAGTGCGCCGAA 61.736 61.111 11.20 0.00 41.33 4.30
394 395 3.842126 CACAGGCACGTCATCGCG 61.842 66.667 0.00 0.00 41.18 5.87
395 396 4.152625 GCACAGGCACGTCATCGC 62.153 66.667 0.00 0.00 41.18 4.58
396 397 3.842126 CGCACAGGCACGTCATCG 61.842 66.667 0.00 0.00 41.24 3.84
397 398 1.565156 TTTCGCACAGGCACGTCATC 61.565 55.000 0.00 0.00 41.24 2.92
398 399 1.568612 CTTTCGCACAGGCACGTCAT 61.569 55.000 0.00 0.00 41.24 3.06
399 400 2.202946 TTTCGCACAGGCACGTCA 60.203 55.556 0.00 0.00 41.24 4.35
400 401 2.551270 CTTTCGCACAGGCACGTC 59.449 61.111 0.00 0.00 41.24 4.34
401 402 2.972505 CCTTTCGCACAGGCACGT 60.973 61.111 0.00 0.00 41.24 4.49
402 403 3.726517 CCCTTTCGCACAGGCACG 61.727 66.667 0.00 0.00 41.24 5.34
403 404 4.043200 GCCCTTTCGCACAGGCAC 62.043 66.667 0.00 0.00 45.07 5.01
405 406 3.741476 CTGCCCTTTCGCACAGGC 61.741 66.667 0.00 0.00 45.96 4.85
406 407 3.741476 GCTGCCCTTTCGCACAGG 61.741 66.667 0.00 0.00 34.35 4.00
407 408 1.870055 AATGCTGCCCTTTCGCACAG 61.870 55.000 0.00 0.00 36.37 3.66
408 409 1.462731 AAATGCTGCCCTTTCGCACA 61.463 50.000 0.00 0.00 36.37 4.57
409 410 0.319813 AAAATGCTGCCCTTTCGCAC 60.320 50.000 0.00 0.00 36.37 5.34
410 411 0.319727 CAAAATGCTGCCCTTTCGCA 60.320 50.000 0.00 0.00 38.14 5.10
411 412 0.038343 TCAAAATGCTGCCCTTTCGC 60.038 50.000 0.00 0.00 0.00 4.70
412 413 1.701704 GTCAAAATGCTGCCCTTTCG 58.298 50.000 0.00 0.00 0.00 3.46
413 414 1.701704 CGTCAAAATGCTGCCCTTTC 58.298 50.000 0.00 0.00 0.00 2.62
414 415 0.319813 GCGTCAAAATGCTGCCCTTT 60.320 50.000 0.00 0.00 34.40 3.11
415 416 1.290009 GCGTCAAAATGCTGCCCTT 59.710 52.632 0.00 0.00 34.40 3.95
416 417 1.870055 CTGCGTCAAAATGCTGCCCT 61.870 55.000 0.00 0.00 38.30 5.19
417 418 1.444895 CTGCGTCAAAATGCTGCCC 60.445 57.895 0.00 0.00 38.30 5.36
418 419 0.039256 TTCTGCGTCAAAATGCTGCC 60.039 50.000 0.00 0.00 38.30 4.85
419 420 1.055338 GTTCTGCGTCAAAATGCTGC 58.945 50.000 0.00 0.00 38.30 5.25
420 421 1.321016 CGTTCTGCGTCAAAATGCTG 58.679 50.000 0.00 0.00 38.30 4.41
421 422 0.385974 GCGTTCTGCGTCAAAATGCT 60.386 50.000 3.76 0.00 43.66 3.79
422 423 2.054008 GCGTTCTGCGTCAAAATGC 58.946 52.632 0.00 0.00 43.66 3.56
432 433 2.417339 TCCTATATGACGCGTTCTGC 57.583 50.000 15.53 0.00 41.47 4.26
433 434 4.386049 GGAATTCCTATATGACGCGTTCTG 59.614 45.833 15.53 0.78 0.00 3.02
434 435 4.557205 GGAATTCCTATATGACGCGTTCT 58.443 43.478 15.53 6.46 0.00 3.01
435 436 3.678548 GGGAATTCCTATATGACGCGTTC 59.321 47.826 23.63 7.53 35.95 3.95
436 437 3.660865 GGGAATTCCTATATGACGCGTT 58.339 45.455 23.63 0.00 35.95 4.84
437 438 2.352421 CGGGAATTCCTATATGACGCGT 60.352 50.000 23.63 13.85 35.95 6.01
438 439 2.259618 CGGGAATTCCTATATGACGCG 58.740 52.381 23.63 3.53 35.95 6.01
439 440 3.314541 ACGGGAATTCCTATATGACGC 57.685 47.619 23.63 3.15 35.95 5.19
440 441 6.263516 TCTAACGGGAATTCCTATATGACG 57.736 41.667 23.63 17.92 35.95 4.35
441 442 7.599245 CACTTCTAACGGGAATTCCTATATGAC 59.401 40.741 23.63 4.60 35.95 3.06
442 443 7.289317 ACACTTCTAACGGGAATTCCTATATGA 59.711 37.037 23.63 13.61 35.95 2.15
443 444 7.442656 ACACTTCTAACGGGAATTCCTATATG 58.557 38.462 23.63 11.68 35.95 1.78
444 445 7.509659 AGACACTTCTAACGGGAATTCCTATAT 59.490 37.037 23.63 10.47 35.95 0.86
445 446 6.837568 AGACACTTCTAACGGGAATTCCTATA 59.162 38.462 23.63 12.90 35.95 1.31
446 447 5.661759 AGACACTTCTAACGGGAATTCCTAT 59.338 40.000 23.63 12.47 35.95 2.57
447 448 5.021458 AGACACTTCTAACGGGAATTCCTA 58.979 41.667 23.63 8.00 35.95 2.94
448 449 3.838903 AGACACTTCTAACGGGAATTCCT 59.161 43.478 23.63 7.20 35.95 3.36
449 450 3.933332 CAGACACTTCTAACGGGAATTCC 59.067 47.826 16.74 16.74 0.00 3.01
450 451 4.566987 ACAGACACTTCTAACGGGAATTC 58.433 43.478 0.00 0.00 0.00 2.17
451 452 4.618920 ACAGACACTTCTAACGGGAATT 57.381 40.909 0.00 0.00 0.00 2.17
452 453 4.566987 GAACAGACACTTCTAACGGGAAT 58.433 43.478 0.00 0.00 0.00 3.01
453 454 3.551454 CGAACAGACACTTCTAACGGGAA 60.551 47.826 0.00 0.00 0.00 3.97
454 455 2.030540 CGAACAGACACTTCTAACGGGA 60.031 50.000 0.00 0.00 0.00 5.14
455 456 2.325761 CGAACAGACACTTCTAACGGG 58.674 52.381 0.00 0.00 0.00 5.28
456 457 2.325761 CCGAACAGACACTTCTAACGG 58.674 52.381 0.00 0.00 35.89 4.44
457 458 1.719780 GCCGAACAGACACTTCTAACG 59.280 52.381 0.00 0.00 0.00 3.18
494 500 4.091365 GGGAAATGCAAATTGAACGTTAGC 59.909 41.667 0.00 0.00 0.00 3.09
561 571 3.243636 GGCTGTGAATGCTGATTAATGGG 60.244 47.826 0.00 0.00 0.00 4.00
718 728 2.094675 CTTTGGGAATCCAGCACGATT 58.905 47.619 0.09 0.00 45.04 3.34
777 802 2.444351 GCGAATTCATTACAGCACAGC 58.556 47.619 6.22 0.00 0.00 4.40
856 882 1.682451 TTTATAGGACGGCCTGCGCT 61.682 55.000 23.83 4.19 46.45 5.92
966 998 1.308326 CTCCTCCCTCTCGACCCTT 59.692 63.158 0.00 0.00 0.00 3.95
978 1018 1.330655 TGTCAGGCGATTCCTCCTCC 61.331 60.000 0.00 0.00 45.52 4.30
1126 1171 7.902920 ATTCAAACAGAAATGGGCTATATGT 57.097 32.000 0.00 0.00 40.22 2.29
1127 1172 8.199449 ACAATTCAAACAGAAATGGGCTATATG 58.801 33.333 0.00 0.00 40.67 1.78
1166 1211 1.066143 GGCTCCCTGTCAGAATCGAAA 60.066 52.381 0.00 0.00 0.00 3.46
1330 1394 2.754658 GAACGAGGGGAGCGGAGA 60.755 66.667 0.00 0.00 0.00 3.71
1386 1456 3.185797 GCCAAAATTAGAAGTGACGACGT 59.814 43.478 0.00 0.00 0.00 4.34
1387 1457 3.424433 GGCCAAAATTAGAAGTGACGACG 60.424 47.826 0.00 0.00 0.00 5.12
1388 1458 3.751698 AGGCCAAAATTAGAAGTGACGAC 59.248 43.478 5.01 0.00 0.00 4.34
1390 1460 4.766404 AAGGCCAAAATTAGAAGTGACG 57.234 40.909 5.01 0.00 0.00 4.35
1391 1461 6.200854 CACAAAAGGCCAAAATTAGAAGTGAC 59.799 38.462 5.01 0.00 0.00 3.67
1392 1462 6.127196 ACACAAAAGGCCAAAATTAGAAGTGA 60.127 34.615 5.01 0.00 0.00 3.41
1393 1463 6.018832 CACACAAAAGGCCAAAATTAGAAGTG 60.019 38.462 5.01 2.15 0.00 3.16
1558 1633 3.884895 ACATGGAAACGGCATGAGATTA 58.115 40.909 0.00 0.00 0.00 1.75
1618 1693 5.699458 CGAACTACAAGTAACAACCCTGAAT 59.301 40.000 0.00 0.00 0.00 2.57
1619 1694 5.051816 CGAACTACAAGTAACAACCCTGAA 58.948 41.667 0.00 0.00 0.00 3.02
1620 1695 4.099881 ACGAACTACAAGTAACAACCCTGA 59.900 41.667 0.00 0.00 0.00 3.86
1621 1696 4.374399 ACGAACTACAAGTAACAACCCTG 58.626 43.478 0.00 0.00 0.00 4.45
1622 1697 4.677673 ACGAACTACAAGTAACAACCCT 57.322 40.909 0.00 0.00 0.00 4.34
1623 1698 5.107337 GCTTACGAACTACAAGTAACAACCC 60.107 44.000 0.00 0.00 0.00 4.11
1624 1699 5.387752 CGCTTACGAACTACAAGTAACAACC 60.388 44.000 0.00 0.00 43.93 3.77
1625 1700 5.593211 CGCTTACGAACTACAAGTAACAAC 58.407 41.667 0.00 0.00 43.93 3.32
1706 1940 5.120830 GTGCACCAAACTAACTGACTATGAG 59.879 44.000 5.22 0.00 0.00 2.90
1708 1942 4.754618 TGTGCACCAAACTAACTGACTATG 59.245 41.667 15.69 0.00 0.00 2.23
1709 1943 4.968259 TGTGCACCAAACTAACTGACTAT 58.032 39.130 15.69 0.00 0.00 2.12
1711 1945 3.275617 TGTGCACCAAACTAACTGACT 57.724 42.857 15.69 0.00 0.00 3.41
1730 1964 1.735360 CCGCCAACCTTGCCATATG 59.265 57.895 0.00 0.00 0.00 1.78
1852 2252 2.047560 GGTACTGTGTCCACGGGC 60.048 66.667 10.78 3.48 41.89 6.13
1876 2520 5.781210 TTTTCCTGCATGTCATGTTTGTA 57.219 34.783 14.26 0.00 0.00 2.41
1877 2521 4.669206 TTTTCCTGCATGTCATGTTTGT 57.331 36.364 14.26 0.00 0.00 2.83
1878 2522 4.142988 GCATTTTCCTGCATGTCATGTTTG 60.143 41.667 14.26 5.08 41.87 2.93
1885 2529 2.677836 TCGTAGCATTTTCCTGCATGTC 59.322 45.455 0.00 0.00 44.77 3.06
2079 2826 0.111253 CCTCCTTCCTGTTGGCAGTT 59.889 55.000 0.00 0.00 41.02 3.16
2150 2897 6.444633 CGTCGGTATGAATGGTAGTATTTCT 58.555 40.000 0.00 0.00 0.00 2.52
2151 2898 5.632347 CCGTCGGTATGAATGGTAGTATTTC 59.368 44.000 2.08 0.00 0.00 2.17
2153 2900 4.560108 GCCGTCGGTATGAATGGTAGTATT 60.560 45.833 13.94 0.00 0.00 1.89
2154 2901 3.057033 GCCGTCGGTATGAATGGTAGTAT 60.057 47.826 13.94 0.00 0.00 2.12
2156 2903 1.068127 GCCGTCGGTATGAATGGTAGT 59.932 52.381 13.94 0.00 0.00 2.73
2157 2904 1.340248 AGCCGTCGGTATGAATGGTAG 59.660 52.381 13.94 0.00 0.00 3.18
2165 2912 0.317603 CGGAGTTAGCCGTCGGTATG 60.318 60.000 13.94 0.00 46.07 2.39
2167 2914 3.501396 CGGAGTTAGCCGTCGGTA 58.499 61.111 13.94 1.27 46.07 4.02
2342 3130 9.844790 TCTCGAAAAGAAGTACGAATACAAATA 57.155 29.630 0.00 0.00 34.50 1.40
2401 3191 1.728971 GGACAACTCATGCTCAACGAG 59.271 52.381 0.00 0.00 0.00 4.18
2502 3295 3.305881 CGAGGACCTTAGGAGAAAACGTT 60.306 47.826 4.77 0.00 0.00 3.99
2503 3296 2.230750 CGAGGACCTTAGGAGAAAACGT 59.769 50.000 4.77 0.00 0.00 3.99
2518 3311 1.792006 AACGTTCATTCCACGAGGAC 58.208 50.000 0.00 0.00 45.73 3.85
2572 3365 5.334957 CGCTCTAGACCAATCGAGCTTATAA 60.335 44.000 8.27 0.00 44.95 0.98
2623 3416 2.476051 CATGTGAGGCGACGCAAC 59.524 61.111 23.09 16.32 43.57 4.17
2630 3423 1.145598 AGCTGATCCATGTGAGGCG 59.854 57.895 0.00 0.00 0.00 5.52
2664 3457 2.301870 TGGGCACGAGTCACTTCTAAAT 59.698 45.455 0.00 0.00 0.00 1.40
2665 3458 1.689813 TGGGCACGAGTCACTTCTAAA 59.310 47.619 0.00 0.00 0.00 1.85
2666 3459 1.334160 TGGGCACGAGTCACTTCTAA 58.666 50.000 0.00 0.00 0.00 2.10
2667 3460 1.334160 TTGGGCACGAGTCACTTCTA 58.666 50.000 0.00 0.00 0.00 2.10
2668 3461 0.468226 TTTGGGCACGAGTCACTTCT 59.532 50.000 0.00 0.00 0.00 2.85
2669 3462 0.586802 GTTTGGGCACGAGTCACTTC 59.413 55.000 0.00 0.00 0.00 3.01
2670 3463 0.107410 TGTTTGGGCACGAGTCACTT 60.107 50.000 0.00 0.00 0.00 3.16
2671 3464 0.108585 ATGTTTGGGCACGAGTCACT 59.891 50.000 0.00 0.00 0.00 3.41
2749 3546 2.851798 GCTCTCAAGCTTCCACCAG 58.148 57.895 0.00 0.00 45.55 4.00
2802 3600 7.283807 TGCATATGCCATCCTGAAACATATATC 59.716 37.037 24.54 0.00 41.18 1.63
2808 3606 3.015675 TGCATATGCCATCCTGAAACA 57.984 42.857 24.54 0.00 41.18 2.83
2826 3624 0.179040 CCAATGCATTTCCCCCATGC 60.179 55.000 9.83 0.00 46.25 4.06
2918 3718 6.274436 ACCCAGGTTTGATATCCCAAAATTTT 59.726 34.615 0.00 0.00 37.72 1.82
2955 4072 0.240945 CCACGAAACTGAACATGGGC 59.759 55.000 0.00 0.00 0.00 5.36
2964 4082 0.251165 ACCCATTCCCCACGAAACTG 60.251 55.000 0.00 0.00 33.08 3.16
3015 4133 0.966179 TGGATGGATCGTATGTCGGG 59.034 55.000 0.00 0.00 40.32 5.14
3113 4232 6.128035 GGTGCTCATTGTACACATGTATTCAA 60.128 38.462 0.00 0.00 36.00 2.69
3133 4252 1.215423 GGGATATCAAACCTGGGTGCT 59.785 52.381 4.83 0.00 0.00 4.40
3198 4317 9.842775 ACACATCCCTATATGAATATAGCATTG 57.157 33.333 10.62 9.41 40.42 2.82
3230 4349 2.280628 GGTTAGGATTTGTGGCTCTCG 58.719 52.381 0.00 0.00 0.00 4.04
3231 4350 2.026262 TGGGTTAGGATTTGTGGCTCTC 60.026 50.000 0.00 0.00 0.00 3.20
3232 4351 1.992557 TGGGTTAGGATTTGTGGCTCT 59.007 47.619 0.00 0.00 0.00 4.09
3233 4352 2.507407 TGGGTTAGGATTTGTGGCTC 57.493 50.000 0.00 0.00 0.00 4.70
3234 4353 2.582636 AGATGGGTTAGGATTTGTGGCT 59.417 45.455 0.00 0.00 0.00 4.75
3235 4354 2.952310 GAGATGGGTTAGGATTTGTGGC 59.048 50.000 0.00 0.00 0.00 5.01
3236 4355 3.053693 TGGAGATGGGTTAGGATTTGTGG 60.054 47.826 0.00 0.00 0.00 4.17
3237 4356 4.235079 TGGAGATGGGTTAGGATTTGTG 57.765 45.455 0.00 0.00 0.00 3.33
3238 4357 4.386761 CCATGGAGATGGGTTAGGATTTGT 60.387 45.833 5.56 0.00 45.11 2.83
3239 4358 4.147321 CCATGGAGATGGGTTAGGATTTG 58.853 47.826 5.56 0.00 45.11 2.32
3240 4359 4.459852 CCATGGAGATGGGTTAGGATTT 57.540 45.455 5.56 0.00 45.11 2.17
3251 4370 6.749139 TCGTTTATTAGAGACCATGGAGATG 58.251 40.000 21.47 0.00 0.00 2.90
3252 4371 6.978674 TCGTTTATTAGAGACCATGGAGAT 57.021 37.500 21.47 2.86 0.00 2.75
3253 4372 6.380274 ACTTCGTTTATTAGAGACCATGGAGA 59.620 38.462 21.47 0.00 0.00 3.71
3254 4373 6.477033 CACTTCGTTTATTAGAGACCATGGAG 59.523 42.308 21.47 1.20 0.00 3.86
3255 4374 6.153851 TCACTTCGTTTATTAGAGACCATGGA 59.846 38.462 21.47 0.00 0.00 3.41
3256 4375 6.255887 GTCACTTCGTTTATTAGAGACCATGG 59.744 42.308 11.19 11.19 0.00 3.66
3257 4376 7.036220 AGTCACTTCGTTTATTAGAGACCATG 58.964 38.462 0.00 0.00 32.23 3.66
3258 4377 7.093902 TGAGTCACTTCGTTTATTAGAGACCAT 60.094 37.037 0.00 0.00 32.23 3.55
3259 4378 6.208007 TGAGTCACTTCGTTTATTAGAGACCA 59.792 38.462 0.00 0.00 32.23 4.02
3260 4379 6.618811 TGAGTCACTTCGTTTATTAGAGACC 58.381 40.000 0.00 0.00 32.23 3.85
3261 4380 6.251801 GCTGAGTCACTTCGTTTATTAGAGAC 59.748 42.308 0.00 0.00 32.08 3.36
3262 4381 6.151312 AGCTGAGTCACTTCGTTTATTAGAGA 59.849 38.462 0.00 0.00 0.00 3.10
3263 4382 6.326375 AGCTGAGTCACTTCGTTTATTAGAG 58.674 40.000 0.00 0.00 0.00 2.43
3264 4383 6.268825 AGCTGAGTCACTTCGTTTATTAGA 57.731 37.500 0.00 0.00 0.00 2.10
3265 4384 7.702772 ACATAGCTGAGTCACTTCGTTTATTAG 59.297 37.037 0.00 0.00 0.00 1.73
3266 4385 7.488150 CACATAGCTGAGTCACTTCGTTTATTA 59.512 37.037 0.00 0.00 0.00 0.98
3267 4386 6.311445 CACATAGCTGAGTCACTTCGTTTATT 59.689 38.462 0.00 0.00 0.00 1.40
3268 4387 5.807520 CACATAGCTGAGTCACTTCGTTTAT 59.192 40.000 0.00 0.00 0.00 1.40
3269 4388 5.161358 CACATAGCTGAGTCACTTCGTTTA 58.839 41.667 0.00 0.00 0.00 2.01
3270 4389 3.990469 CACATAGCTGAGTCACTTCGTTT 59.010 43.478 0.00 0.00 0.00 3.60
3271 4390 3.579709 CACATAGCTGAGTCACTTCGTT 58.420 45.455 0.00 0.00 0.00 3.85
3272 4391 2.094494 CCACATAGCTGAGTCACTTCGT 60.094 50.000 0.00 0.00 0.00 3.85
3273 4392 2.094494 ACCACATAGCTGAGTCACTTCG 60.094 50.000 0.00 0.00 0.00 3.79
3274 4393 3.194542 AGACCACATAGCTGAGTCACTTC 59.805 47.826 0.00 0.00 34.05 3.01
3275 4394 3.056250 CAGACCACATAGCTGAGTCACTT 60.056 47.826 0.00 0.00 34.05 3.16
3276 4395 2.495270 CAGACCACATAGCTGAGTCACT 59.505 50.000 0.00 0.00 34.05 3.41
3277 4396 2.493675 TCAGACCACATAGCTGAGTCAC 59.506 50.000 0.00 0.00 34.02 3.67
3278 4397 2.807676 TCAGACCACATAGCTGAGTCA 58.192 47.619 0.00 0.00 34.02 3.41
3279 4398 4.399004 AATCAGACCACATAGCTGAGTC 57.601 45.455 0.00 0.00 41.45 3.36
3280 4399 4.833478 AAATCAGACCACATAGCTGAGT 57.167 40.909 0.00 0.00 41.45 3.41
3281 4400 5.911752 AGTAAATCAGACCACATAGCTGAG 58.088 41.667 0.00 0.00 41.45 3.35
3282 4401 5.450550 CGAGTAAATCAGACCACATAGCTGA 60.451 44.000 0.00 0.00 42.25 4.26
3283 4402 4.742167 CGAGTAAATCAGACCACATAGCTG 59.258 45.833 0.00 0.00 0.00 4.24
3284 4403 4.202161 CCGAGTAAATCAGACCACATAGCT 60.202 45.833 0.00 0.00 0.00 3.32
3285 4404 4.051922 CCGAGTAAATCAGACCACATAGC 58.948 47.826 0.00 0.00 0.00 2.97
3286 4405 4.501571 CCCCGAGTAAATCAGACCACATAG 60.502 50.000 0.00 0.00 0.00 2.23
3287 4406 3.386726 CCCCGAGTAAATCAGACCACATA 59.613 47.826 0.00 0.00 0.00 2.29
3288 4407 2.170607 CCCCGAGTAAATCAGACCACAT 59.829 50.000 0.00 0.00 0.00 3.21
3289 4408 1.553248 CCCCGAGTAAATCAGACCACA 59.447 52.381 0.00 0.00 0.00 4.17
3290 4409 1.553704 ACCCCGAGTAAATCAGACCAC 59.446 52.381 0.00 0.00 0.00 4.16
3291 4410 1.946984 ACCCCGAGTAAATCAGACCA 58.053 50.000 0.00 0.00 0.00 4.02
3292 4411 2.235402 TCAACCCCGAGTAAATCAGACC 59.765 50.000 0.00 0.00 0.00 3.85
3293 4412 3.194968 TCTCAACCCCGAGTAAATCAGAC 59.805 47.826 0.00 0.00 34.46 3.51
3294 4413 3.437213 TCTCAACCCCGAGTAAATCAGA 58.563 45.455 0.00 0.00 34.46 3.27
3295 4414 3.887621 TCTCAACCCCGAGTAAATCAG 57.112 47.619 0.00 0.00 34.46 2.90
3296 4415 4.627284 TTTCTCAACCCCGAGTAAATCA 57.373 40.909 0.00 0.00 34.46 2.57
3297 4416 6.510879 AAATTTCTCAACCCCGAGTAAATC 57.489 37.500 0.00 0.00 34.46 2.17
3298 4417 6.911250 AAAATTTCTCAACCCCGAGTAAAT 57.089 33.333 0.00 0.00 34.46 1.40
3299 4418 7.449086 ACATAAAATTTCTCAACCCCGAGTAAA 59.551 33.333 0.00 0.00 34.46 2.01
3300 4419 6.943718 ACATAAAATTTCTCAACCCCGAGTAA 59.056 34.615 0.00 0.00 34.46 2.24
3301 4420 6.373216 CACATAAAATTTCTCAACCCCGAGTA 59.627 38.462 0.00 0.00 34.46 2.59
3302 4421 5.183140 CACATAAAATTTCTCAACCCCGAGT 59.817 40.000 0.00 0.00 34.46 4.18
3303 4422 5.640732 CACATAAAATTTCTCAACCCCGAG 58.359 41.667 0.00 0.00 0.00 4.63
3304 4423 4.082463 GCACATAAAATTTCTCAACCCCGA 60.082 41.667 0.00 0.00 0.00 5.14
3305 4424 4.173256 GCACATAAAATTTCTCAACCCCG 58.827 43.478 0.00 0.00 0.00 5.73
3306 4425 5.146010 TGCACATAAAATTTCTCAACCCC 57.854 39.130 0.00 0.00 0.00 4.95
3307 4426 5.639082 CCTTGCACATAAAATTTCTCAACCC 59.361 40.000 0.00 0.00 0.00 4.11
3308 4427 5.120674 GCCTTGCACATAAAATTTCTCAACC 59.879 40.000 0.00 0.00 0.00 3.77
3309 4428 5.695816 TGCCTTGCACATAAAATTTCTCAAC 59.304 36.000 0.00 0.00 31.71 3.18
3310 4429 5.851720 TGCCTTGCACATAAAATTTCTCAA 58.148 33.333 0.00 0.00 31.71 3.02
3311 4430 5.465532 TGCCTTGCACATAAAATTTCTCA 57.534 34.783 0.00 0.00 31.71 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.