Multiple sequence alignment - TraesCS6D01G276600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G276600 chr6D 100.000 3822 0 0 1 3822 385469654 385465833 0.000000e+00 7059.0
1 TraesCS6D01G276600 chr6D 91.161 577 43 7 126 697 353212537 353213110 0.000000e+00 776.0
2 TraesCS6D01G276600 chr6D 92.505 507 24 3 204 696 18424985 18424479 0.000000e+00 713.0
3 TraesCS6D01G276600 chr6D 76.500 400 60 15 2440 2833 385636271 385636642 1.810000e-43 187.0
4 TraesCS6D01G276600 chr6D 87.069 116 13 2 2229 2343 385636160 385636274 3.100000e-26 130.0
5 TraesCS6D01G276600 chr6D 96.970 33 1 0 2992 3024 412427960 412427928 5.330000e-04 56.5
6 TraesCS6D01G276600 chr6B 87.066 2335 145 52 753 2984 575380133 575377853 0.000000e+00 2494.0
7 TraesCS6D01G276600 chr6B 79.545 396 52 13 2440 2833 575926527 575926895 4.900000e-64 255.0
8 TraesCS6D01G276600 chr6B 80.000 315 53 7 1256 1560 575925597 575925911 1.380000e-54 224.0
9 TraesCS6D01G276600 chr6A 90.031 1605 117 29 1988 3562 529606406 529604815 0.000000e+00 2037.0
10 TraesCS6D01G276600 chr6A 86.811 1107 60 29 729 1775 529609663 529608583 0.000000e+00 1157.0
11 TraesCS6D01G276600 chr6A 87.833 263 32 0 3560 3822 546036850 546037112 3.710000e-80 309.0
12 TraesCS6D01G276600 chr6A 76.727 550 80 32 1037 1560 530088920 530089447 2.930000e-66 263.0
13 TraesCS6D01G276600 chr6A 79.515 371 51 11 2440 2810 530089898 530090243 1.370000e-59 241.0
14 TraesCS6D01G276600 chr6A 87.879 132 12 4 2213 2343 530089773 530089901 6.610000e-33 152.0
15 TraesCS6D01G276600 chr6A 90.361 83 8 0 44 126 442400466 442400384 4.040000e-20 110.0
16 TraesCS6D01G276600 chr6A 94.737 38 2 0 60 97 169891177 169891214 4.120000e-05 60.2
17 TraesCS6D01G276600 chr5D 93.345 586 25 4 126 697 318012222 318011637 0.000000e+00 854.0
18 TraesCS6D01G276600 chr5D 85.714 84 12 0 43 126 530428329 530428412 5.260000e-14 89.8
19 TraesCS6D01G276600 chr2D 93.333 585 24 6 126 696 508095473 508094890 0.000000e+00 850.0
20 TraesCS6D01G276600 chr2D 92.821 585 27 5 126 696 23747308 23747891 0.000000e+00 833.0
21 TraesCS6D01G276600 chr2D 92.504 587 30 2 126 698 642039323 642039909 0.000000e+00 828.0
22 TraesCS6D01G276600 chr2D 91.638 586 33 5 126 697 601172794 601173377 0.000000e+00 797.0
23 TraesCS6D01G276600 chr2D 79.670 182 30 6 3036 3215 418047252 418047076 1.440000e-24 124.0
24 TraesCS6D01G276600 chr2D 75.556 180 41 3 3033 3211 380415432 380415609 6.800000e-13 86.1
25 TraesCS6D01G276600 chr1D 93.162 585 22 8 126 696 260315287 260314707 0.000000e+00 843.0
26 TraesCS6D01G276600 chr1D 92.360 589 31 5 126 700 6633653 6634241 0.000000e+00 826.0
27 TraesCS6D01G276600 chr1D 90.444 586 42 3 126 697 6521346 6521931 0.000000e+00 760.0
28 TraesCS6D01G276600 chr2A 91.409 582 36 3 126 693 24435122 24434541 0.000000e+00 785.0
29 TraesCS6D01G276600 chr2A 75.556 180 42 2 3033 3211 515950198 515950376 1.890000e-13 87.9
30 TraesCS6D01G276600 chr3A 91.126 586 38 4 126 697 534333026 534332441 0.000000e+00 782.0
31 TraesCS6D01G276600 chr3A 79.891 184 31 5 3033 3215 427770247 427770425 3.100000e-26 130.0
32 TraesCS6D01G276600 chr5A 90.801 587 39 5 126 698 538773438 538772853 0.000000e+00 771.0
33 TraesCS6D01G276600 chr5A 95.082 427 20 1 272 698 135059004 135058579 0.000000e+00 671.0
34 TraesCS6D01G276600 chr5A 78.417 139 27 3 3083 3220 1801817 1801681 1.890000e-13 87.9
35 TraesCS6D01G276600 chr7D 90.541 592 28 11 126 701 29044585 29044006 0.000000e+00 758.0
36 TraesCS6D01G276600 chr7D 91.635 263 21 1 3561 3822 508340479 508340741 2.810000e-96 363.0
37 TraesCS6D01G276600 chr4D 92.966 526 23 3 185 696 503814768 503814243 0.000000e+00 754.0
38 TraesCS6D01G276600 chr4D 97.203 143 4 0 126 268 483478260 483478402 3.810000e-60 243.0
39 TraesCS6D01G276600 chr4D 89.873 79 8 0 43 121 398567991 398568069 6.750000e-18 102.0
40 TraesCS6D01G276600 chr7B 95.669 254 10 1 3563 3816 425166920 425167172 1.280000e-109 407.0
41 TraesCS6D01G276600 chr7B 90.234 256 24 1 3567 3822 728952980 728952726 2.200000e-87 333.0
42 TraesCS6D01G276600 chr7B 89.313 262 28 0 3561 3822 165114728 165114467 2.850000e-86 329.0
43 TraesCS6D01G276600 chr4A 93.487 261 17 0 3562 3822 676155422 676155682 4.630000e-104 388.0
44 TraesCS6D01G276600 chr7A 91.985 262 20 1 3562 3822 552767928 552767667 2.170000e-97 366.0
45 TraesCS6D01G276600 chr5B 89.655 261 27 0 3562 3822 74446746 74446486 2.200000e-87 333.0
46 TraesCS6D01G276600 chr5B 83.333 84 14 0 43 126 608645829 608645746 1.140000e-10 78.7
47 TraesCS6D01G276600 chr1B 87.594 266 31 2 3557 3822 629158314 629158051 1.330000e-79 307.0
48 TraesCS6D01G276600 chr3B 89.157 83 8 1 45 126 65336329 65336247 6.750000e-18 102.0
49 TraesCS6D01G276600 chr3B 88.060 67 8 0 60 126 707125146 707125212 3.170000e-11 80.5
50 TraesCS6D01G276600 chr3B 93.023 43 3 0 60 102 89373488 89373446 3.190000e-06 63.9
51 TraesCS6D01G276600 chr4B 92.647 68 5 0 3143 3210 539506394 539506461 8.740000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G276600 chr6D 385465833 385469654 3821 True 7059.000000 7059 100.000000 1 3822 1 chr6D.!!$R2 3821
1 TraesCS6D01G276600 chr6D 353212537 353213110 573 False 776.000000 776 91.161000 126 697 1 chr6D.!!$F1 571
2 TraesCS6D01G276600 chr6D 18424479 18424985 506 True 713.000000 713 92.505000 204 696 1 chr6D.!!$R1 492
3 TraesCS6D01G276600 chr6B 575377853 575380133 2280 True 2494.000000 2494 87.066000 753 2984 1 chr6B.!!$R1 2231
4 TraesCS6D01G276600 chr6B 575925597 575926895 1298 False 239.500000 255 79.772500 1256 2833 2 chr6B.!!$F1 1577
5 TraesCS6D01G276600 chr6A 529604815 529609663 4848 True 1597.000000 2037 88.421000 729 3562 2 chr6A.!!$R2 2833
6 TraesCS6D01G276600 chr6A 530088920 530090243 1323 False 218.666667 263 81.373667 1037 2810 3 chr6A.!!$F3 1773
7 TraesCS6D01G276600 chr5D 318011637 318012222 585 True 854.000000 854 93.345000 126 697 1 chr5D.!!$R1 571
8 TraesCS6D01G276600 chr2D 508094890 508095473 583 True 850.000000 850 93.333000 126 696 1 chr2D.!!$R2 570
9 TraesCS6D01G276600 chr2D 23747308 23747891 583 False 833.000000 833 92.821000 126 696 1 chr2D.!!$F1 570
10 TraesCS6D01G276600 chr2D 642039323 642039909 586 False 828.000000 828 92.504000 126 698 1 chr2D.!!$F4 572
11 TraesCS6D01G276600 chr2D 601172794 601173377 583 False 797.000000 797 91.638000 126 697 1 chr2D.!!$F3 571
12 TraesCS6D01G276600 chr1D 260314707 260315287 580 True 843.000000 843 93.162000 126 696 1 chr1D.!!$R1 570
13 TraesCS6D01G276600 chr1D 6633653 6634241 588 False 826.000000 826 92.360000 126 700 1 chr1D.!!$F2 574
14 TraesCS6D01G276600 chr1D 6521346 6521931 585 False 760.000000 760 90.444000 126 697 1 chr1D.!!$F1 571
15 TraesCS6D01G276600 chr2A 24434541 24435122 581 True 785.000000 785 91.409000 126 693 1 chr2A.!!$R1 567
16 TraesCS6D01G276600 chr3A 534332441 534333026 585 True 782.000000 782 91.126000 126 697 1 chr3A.!!$R1 571
17 TraesCS6D01G276600 chr5A 538772853 538773438 585 True 771.000000 771 90.801000 126 698 1 chr5A.!!$R3 572
18 TraesCS6D01G276600 chr7D 29044006 29044585 579 True 758.000000 758 90.541000 126 701 1 chr7D.!!$R1 575
19 TraesCS6D01G276600 chr4D 503814243 503814768 525 True 754.000000 754 92.966000 185 696 1 chr4D.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.036765 TTTTCTCCCGTCCATGTCCG 60.037 55.0 0.00 0.00 0.00 4.79 F
724 740 0.106116 GGGACGGAGGGAGTACTCAT 60.106 60.0 23.91 12.09 39.27 2.90 F
1715 2048 0.107081 AACCACGACCGGTCAAATCA 59.893 50.0 32.80 0.00 38.76 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2585 0.234884 CTTCTTGACGCCGACAAACC 59.765 55.0 3.34 0.00 0.00 3.27 R
1977 2790 0.322322 TTCGTAAGGGTTGGCGACAT 59.678 50.0 7.28 0.00 38.12 3.06 R
3650 6024 0.108615 GAGGTCCTGGTCGACATGTG 60.109 60.0 18.91 2.55 34.24 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.997485 GTGAGCACCACATTTTCTCC 57.003 50.000 4.63 0.00 45.03 3.71
25 26 1.541588 GTGAGCACCACATTTTCTCCC 59.458 52.381 4.63 0.00 45.03 4.30
26 27 0.804989 GAGCACCACATTTTCTCCCG 59.195 55.000 0.00 0.00 0.00 5.14
27 28 0.110486 AGCACCACATTTTCTCCCGT 59.890 50.000 0.00 0.00 0.00 5.28
28 29 0.521735 GCACCACATTTTCTCCCGTC 59.478 55.000 0.00 0.00 0.00 4.79
29 30 1.165270 CACCACATTTTCTCCCGTCC 58.835 55.000 0.00 0.00 0.00 4.79
30 31 0.768622 ACCACATTTTCTCCCGTCCA 59.231 50.000 0.00 0.00 0.00 4.02
31 32 1.354368 ACCACATTTTCTCCCGTCCAT 59.646 47.619 0.00 0.00 0.00 3.41
32 33 1.745087 CCACATTTTCTCCCGTCCATG 59.255 52.381 0.00 0.00 0.00 3.66
33 34 2.436417 CACATTTTCTCCCGTCCATGT 58.564 47.619 0.00 0.00 0.00 3.21
34 35 2.420022 CACATTTTCTCCCGTCCATGTC 59.580 50.000 0.00 0.00 0.00 3.06
35 36 2.017049 CATTTTCTCCCGTCCATGTCC 58.983 52.381 0.00 0.00 0.00 4.02
36 37 0.036765 TTTTCTCCCGTCCATGTCCG 60.037 55.000 0.00 0.00 0.00 4.79
37 38 1.189524 TTTCTCCCGTCCATGTCCGT 61.190 55.000 0.00 0.00 0.00 4.69
38 39 1.601419 TTCTCCCGTCCATGTCCGTC 61.601 60.000 0.00 0.00 0.00 4.79
39 40 3.411418 CTCCCGTCCATGTCCGTCG 62.411 68.421 0.00 0.00 0.00 5.12
40 41 3.755628 CCCGTCCATGTCCGTCGT 61.756 66.667 0.00 0.00 0.00 4.34
41 42 2.202570 CCGTCCATGTCCGTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
42 43 2.564458 CGTCCATGTCCGTCGTCA 59.436 61.111 0.00 0.00 0.00 4.35
43 44 1.081041 CGTCCATGTCCGTCGTCAA 60.081 57.895 0.00 0.00 0.00 3.18
44 45 0.457853 CGTCCATGTCCGTCGTCAAT 60.458 55.000 0.00 0.00 0.00 2.57
45 46 1.202211 CGTCCATGTCCGTCGTCAATA 60.202 52.381 0.00 0.00 0.00 1.90
46 47 2.190981 GTCCATGTCCGTCGTCAATAC 58.809 52.381 0.00 0.00 0.00 1.89
47 48 2.097036 TCCATGTCCGTCGTCAATACT 58.903 47.619 0.00 0.00 0.00 2.12
48 49 2.494471 TCCATGTCCGTCGTCAATACTT 59.506 45.455 0.00 0.00 0.00 2.24
49 50 2.858344 CCATGTCCGTCGTCAATACTTC 59.142 50.000 0.00 0.00 0.00 3.01
50 51 2.642139 TGTCCGTCGTCAATACTTCC 57.358 50.000 0.00 0.00 0.00 3.46
51 52 2.165167 TGTCCGTCGTCAATACTTCCT 58.835 47.619 0.00 0.00 0.00 3.36
52 53 2.163010 TGTCCGTCGTCAATACTTCCTC 59.837 50.000 0.00 0.00 0.00 3.71
53 54 1.747355 TCCGTCGTCAATACTTCCTCC 59.253 52.381 0.00 0.00 0.00 4.30
54 55 1.533338 CCGTCGTCAATACTTCCTCCG 60.533 57.143 0.00 0.00 0.00 4.63
55 56 1.131883 CGTCGTCAATACTTCCTCCGT 59.868 52.381 0.00 0.00 0.00 4.69
56 57 2.352651 CGTCGTCAATACTTCCTCCGTA 59.647 50.000 0.00 0.00 0.00 4.02
57 58 3.003068 CGTCGTCAATACTTCCTCCGTAT 59.997 47.826 0.00 0.00 0.00 3.06
58 59 4.497006 CGTCGTCAATACTTCCTCCGTATT 60.497 45.833 0.00 0.00 37.89 1.89
59 60 5.277490 CGTCGTCAATACTTCCTCCGTATTA 60.277 44.000 0.00 0.00 35.88 0.98
60 61 6.498304 GTCGTCAATACTTCCTCCGTATTAA 58.502 40.000 0.00 0.00 35.88 1.40
61 62 6.974622 GTCGTCAATACTTCCTCCGTATTAAA 59.025 38.462 0.00 0.00 35.88 1.52
62 63 7.489113 GTCGTCAATACTTCCTCCGTATTAAAA 59.511 37.037 0.00 0.00 35.88 1.52
63 64 8.199449 TCGTCAATACTTCCTCCGTATTAAAAT 58.801 33.333 0.00 0.00 35.88 1.82
64 65 9.467258 CGTCAATACTTCCTCCGTATTAAAATA 57.533 33.333 0.00 0.00 35.88 1.40
71 72 9.901172 ACTTCCTCCGTATTAAAATAAATGTCT 57.099 29.630 0.00 0.00 0.00 3.41
73 74 9.893634 TTCCTCCGTATTAAAATAAATGTCTCA 57.106 29.630 0.00 0.00 0.00 3.27
74 75 9.893634 TCCTCCGTATTAAAATAAATGTCTCAA 57.106 29.630 0.00 0.00 0.00 3.02
75 76 9.931210 CCTCCGTATTAAAATAAATGTCTCAAC 57.069 33.333 0.00 0.00 0.00 3.18
76 77 9.931210 CTCCGTATTAAAATAAATGTCTCAACC 57.069 33.333 0.00 0.00 0.00 3.77
77 78 9.675464 TCCGTATTAAAATAAATGTCTCAACCT 57.325 29.630 0.00 0.00 0.00 3.50
117 118 7.934457 ACTAAAGTTAGTGTAAAGTCGAGACA 58.066 34.615 5.99 0.00 42.13 3.41
118 119 7.859875 ACTAAAGTTAGTGTAAAGTCGAGACAC 59.140 37.037 5.99 10.37 42.13 3.67
147 148 4.111375 TCTTAGTAGCGCTTTTCCTCAG 57.889 45.455 18.68 7.99 0.00 3.35
148 149 3.762288 TCTTAGTAGCGCTTTTCCTCAGA 59.238 43.478 18.68 10.22 0.00 3.27
221 222 3.558505 GTGCTTCATCACACACATTGAC 58.441 45.455 0.00 0.00 36.77 3.18
268 269 2.025155 TCTGGAGATTAGGCGTCTGAC 58.975 52.381 0.00 0.00 0.00 3.51
269 270 1.751351 CTGGAGATTAGGCGTCTGACA 59.249 52.381 0.00 0.00 0.00 3.58
515 530 3.512329 TGCGAGGTCTGTTTGGTATTAGA 59.488 43.478 0.00 0.00 0.00 2.10
546 561 4.239428 TCAGCATCCCTTCATCAATTGA 57.761 40.909 11.26 11.26 0.00 2.57
594 609 3.870633 AGACGGTGGCTTTAGTCTTAG 57.129 47.619 0.00 0.00 40.64 2.18
598 613 3.828451 ACGGTGGCTTTAGTCTTAGTGTA 59.172 43.478 0.00 0.00 0.00 2.90
651 666 3.899052 AATAAAGTGGCTGCATGCATT 57.101 38.095 22.97 13.89 45.15 3.56
714 730 2.271944 AAACTTCTTTGGGACGGAGG 57.728 50.000 0.00 0.00 0.00 4.30
715 731 0.400594 AACTTCTTTGGGACGGAGGG 59.599 55.000 0.00 0.00 0.00 4.30
716 732 0.473117 ACTTCTTTGGGACGGAGGGA 60.473 55.000 0.00 0.00 0.00 4.20
717 733 0.250513 CTTCTTTGGGACGGAGGGAG 59.749 60.000 0.00 0.00 0.00 4.30
718 734 0.473117 TTCTTTGGGACGGAGGGAGT 60.473 55.000 0.00 0.00 0.00 3.85
719 735 0.410663 TCTTTGGGACGGAGGGAGTA 59.589 55.000 0.00 0.00 0.00 2.59
720 736 0.535797 CTTTGGGACGGAGGGAGTAC 59.464 60.000 0.00 0.00 0.00 2.73
721 737 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
722 738 0.324091 TTGGGACGGAGGGAGTACTC 60.324 60.000 14.87 14.87 36.76 2.59
723 739 1.305623 GGGACGGAGGGAGTACTCA 59.694 63.158 23.91 0.00 39.27 3.41
724 740 0.106116 GGGACGGAGGGAGTACTCAT 60.106 60.000 23.91 12.09 39.27 2.90
725 741 1.688627 GGGACGGAGGGAGTACTCATT 60.689 57.143 23.91 11.33 39.27 2.57
726 742 2.423947 GGGACGGAGGGAGTACTCATTA 60.424 54.545 23.91 0.00 39.27 1.90
727 743 2.885894 GGACGGAGGGAGTACTCATTAG 59.114 54.545 23.91 12.82 39.27 1.73
884 907 7.463913 CGTTTTTGTGCTCTCTAATCTCTGATC 60.464 40.741 0.00 0.00 0.00 2.92
891 914 7.169645 GTGCTCTCTAATCTCTGATCAAATCAC 59.830 40.741 0.00 0.00 35.06 3.06
897 920 1.857217 CTCTGATCAAATCACGCGAGG 59.143 52.381 15.93 4.29 35.06 4.63
928 951 4.778415 CCTGTGACGACGAGGCCG 62.778 72.222 0.00 0.00 42.50 6.13
944 967 2.513666 CGCCACACGCATACCCAT 60.514 61.111 0.00 0.00 37.30 4.00
988 1011 1.737838 ACATGACACATACCAAGGCG 58.262 50.000 0.00 0.00 0.00 5.52
1028 1051 0.183014 AGCATTGATCAGGAGCCAGG 59.817 55.000 11.11 0.00 0.00 4.45
1239 1296 1.068250 GATTCCGAGAAGGGAGCCG 59.932 63.158 0.00 0.00 41.52 5.52
1317 1374 2.426183 CGTTCTTCGACGCCGACAG 61.426 63.158 0.00 0.00 45.50 3.51
1350 1407 1.027255 TCCTTCTCCGAGACAGAGCG 61.027 60.000 0.00 0.00 0.00 5.03
1359 1416 2.179517 GACAGAGCGAGGTGACGG 59.820 66.667 0.00 0.00 0.00 4.79
1369 1426 1.802880 CGAGGTGACGGAATGACCATC 60.803 57.143 0.00 0.00 38.90 3.51
1478 1559 3.524606 ATGCATGCAGGGCTTCGC 61.525 61.111 26.69 0.00 0.00 4.70
1560 1641 1.975680 GACCCAAGACCAGACCTGTAA 59.024 52.381 0.00 0.00 0.00 2.41
1562 1643 2.257207 CCCAAGACCAGACCTGTAAGA 58.743 52.381 0.00 0.00 34.07 2.10
1563 1644 2.637872 CCCAAGACCAGACCTGTAAGAA 59.362 50.000 0.00 0.00 34.07 2.52
1564 1645 3.072476 CCCAAGACCAGACCTGTAAGAAA 59.928 47.826 0.00 0.00 34.07 2.52
1565 1646 4.065789 CCAAGACCAGACCTGTAAGAAAC 58.934 47.826 0.00 0.00 34.07 2.78
1567 1648 5.368989 CAAGACCAGACCTGTAAGAAACTT 58.631 41.667 0.00 0.00 34.07 2.66
1568 1649 5.632034 AGACCAGACCTGTAAGAAACTTT 57.368 39.130 0.00 0.00 34.07 2.66
1569 1650 5.612351 AGACCAGACCTGTAAGAAACTTTC 58.388 41.667 0.00 0.00 34.07 2.62
1570 1651 4.377897 ACCAGACCTGTAAGAAACTTTCG 58.622 43.478 0.00 0.00 34.07 3.46
1624 1954 1.293498 GTCCTTTCAGAGGCGCTCA 59.707 57.895 7.64 0.00 45.87 4.26
1636 1966 1.154836 GCGCTCAGTTTCACGAACG 60.155 57.895 0.00 0.00 43.20 3.95
1637 1967 1.154836 CGCTCAGTTTCACGAACGC 60.155 57.895 0.00 0.00 43.20 4.84
1715 2048 0.107081 AACCACGACCGGTCAAATCA 59.893 50.000 32.80 0.00 38.76 2.57
1728 2072 3.756434 GGTCAAATCAATCGAGGAAACCA 59.244 43.478 0.00 0.00 0.00 3.67
1745 2089 0.933097 CCAGTCAAATGCGATCGAGG 59.067 55.000 21.57 2.37 0.00 4.63
1767 2572 2.908015 GCCTTCTACATGGGCCGA 59.092 61.111 0.00 0.00 39.96 5.54
1769 2574 1.972660 GCCTTCTACATGGGCCGACT 61.973 60.000 0.00 0.00 39.96 4.18
1780 2585 1.207089 TGGGCCGACTTAGTTGATCAG 59.793 52.381 0.31 0.00 0.00 2.90
1784 2589 3.335579 GCCGACTTAGTTGATCAGGTTT 58.664 45.455 0.31 0.00 0.00 3.27
1809 2614 1.291877 CGTCAAGAAGCTCAACCGGG 61.292 60.000 6.32 0.00 0.00 5.73
1832 2637 2.127708 CTAAGGCACCCAATAGGAGGT 58.872 52.381 0.00 0.00 39.89 3.85
1849 2654 3.113043 GAGGTCCCAGTGTTTAGGGTAT 58.887 50.000 0.00 0.00 45.64 2.73
1850 2655 3.113043 AGGTCCCAGTGTTTAGGGTATC 58.887 50.000 0.00 0.00 45.64 2.24
1851 2656 2.159000 GGTCCCAGTGTTTAGGGTATCG 60.159 54.545 0.00 0.00 45.64 2.92
1875 2680 1.225376 TTTCTGGTGGTTAGCGTGCG 61.225 55.000 0.00 0.00 0.00 5.34
1983 2796 1.305930 GGAAACCCTGACCATGTCGC 61.306 60.000 0.00 0.00 34.95 5.19
2012 4332 0.691078 CGAAATCCTCCTCCCCTCCA 60.691 60.000 0.00 0.00 0.00 3.86
2034 4359 5.765182 CCACACAAGAGTTTATTCACTCCTT 59.235 40.000 0.00 0.00 43.89 3.36
2040 4365 5.094387 AGAGTTTATTCACTCCTTCCCTGA 58.906 41.667 0.00 0.00 43.89 3.86
2055 4380 1.523758 CCTGAGTTTTTGACCCTCGG 58.476 55.000 0.00 0.00 0.00 4.63
2067 4392 2.907917 CCTCGGGGCTCTAGGACG 60.908 72.222 0.00 0.00 31.64 4.79
2134 4459 8.664211 AATTTTCAAAAAGGCGTAATTTACCA 57.336 26.923 1.04 0.00 0.00 3.25
2345 4677 1.135083 ACGATGCTCAAGGAAGGTACG 60.135 52.381 0.00 0.00 0.00 3.67
2372 4707 0.940126 CACATACGCCCTGATCTTGC 59.060 55.000 0.00 0.00 0.00 4.01
2379 4714 1.743431 CGCCCTGATCTTGCACATGTA 60.743 52.381 0.00 0.00 0.00 2.29
2383 4718 2.356022 CCTGATCTTGCACATGTACCCA 60.356 50.000 0.00 0.00 0.00 4.51
2390 4726 5.073428 TCTTGCACATGTACCCAAAATGTA 58.927 37.500 0.00 0.00 33.31 2.29
2400 4736 8.744652 CATGTACCCAAAATGTAAAAGACCATA 58.255 33.333 0.00 0.00 0.00 2.74
2401 4737 8.343168 TGTACCCAAAATGTAAAAGACCATAG 57.657 34.615 0.00 0.00 0.00 2.23
2434 4770 3.511540 TCTGCTATATCGATCCACTTGGG 59.488 47.826 0.00 0.00 35.41 4.12
2450 4786 1.384191 GGGATGCAGGTTTGTCCCT 59.616 57.895 12.73 0.00 45.57 4.20
2639 4979 0.319297 GTGTCGCCGTGTTAACTCCT 60.319 55.000 7.22 0.00 0.00 3.69
2694 5034 2.743928 CGGAGTGGGACTTGCTGC 60.744 66.667 0.00 0.00 0.00 5.25
2780 5120 1.004560 CCTCTTCGTTCAGCTGGCA 60.005 57.895 15.13 0.00 0.00 4.92
2783 5123 1.603802 CTCTTCGTTCAGCTGGCAAAA 59.396 47.619 15.13 0.00 0.00 2.44
2836 5191 7.243487 AGCATGATTTGTATTTGTACTTGTCG 58.757 34.615 0.00 0.00 0.00 4.35
2838 5193 7.216317 GCATGATTTGTATTTGTACTTGTCGTC 59.784 37.037 0.00 0.00 0.00 4.20
2848 5203 5.361135 TGTACTTGTCGTCTCGTTGATTA 57.639 39.130 0.00 0.00 0.00 1.75
2850 5205 5.798434 TGTACTTGTCGTCTCGTTGATTATG 59.202 40.000 0.00 0.00 0.00 1.90
2892 5254 5.766150 TGTCAATGTAAAAAGGGACTGTG 57.234 39.130 0.00 0.00 40.86 3.66
2918 5280 6.371809 TTTGACAGTCCACTGAAATACAAC 57.628 37.500 13.75 0.00 46.59 3.32
3008 5371 8.612619 ACTCACTTTATTACAATGAATAAGGCG 58.387 33.333 0.00 0.00 33.73 5.52
3013 5376 1.024271 ACAATGAATAAGGCGCGCAT 58.976 45.000 34.42 26.01 0.00 4.73
3020 5383 0.318107 ATAAGGCGCGCATGCATTTC 60.318 50.000 34.42 12.85 42.97 2.17
3024 5387 1.342473 GCGCGCATGCATTTCAAAG 59.658 52.632 29.10 0.00 42.97 2.77
3025 5388 1.072116 GCGCGCATGCATTTCAAAGA 61.072 50.000 29.10 0.00 42.97 2.52
3026 5389 0.636733 CGCGCATGCATTTCAAAGAC 59.363 50.000 19.57 0.00 42.97 3.01
3027 5390 0.994263 GCGCATGCATTTCAAAGACC 59.006 50.000 19.57 0.00 42.15 3.85
3029 5392 2.883574 CGCATGCATTTCAAAGACCAT 58.116 42.857 19.57 0.00 0.00 3.55
3030 5393 3.734597 GCGCATGCATTTCAAAGACCATA 60.735 43.478 19.57 0.00 42.15 2.74
3031 5394 4.422840 CGCATGCATTTCAAAGACCATAA 58.577 39.130 19.57 0.00 0.00 1.90
3034 5403 6.036300 CGCATGCATTTCAAAGACCATAAATT 59.964 34.615 19.57 0.00 0.00 1.82
3059 5428 6.909550 ATTAGACCAACCAAATGCAGTTTA 57.090 33.333 0.00 0.00 0.00 2.01
3067 5436 8.589338 ACCAACCAAATGCAGTTTATATGTAAA 58.411 29.630 0.00 0.00 0.00 2.01
3145 5514 9.739276 TCTGAGGTCACAAAAACTCATATTATT 57.261 29.630 0.00 0.00 39.06 1.40
3175 5544 5.585500 TTTACGGTCAGAGTTGAATTTCG 57.415 39.130 0.00 0.00 34.49 3.46
3185 5554 6.417635 TCAGAGTTGAATTTCGAAAAACATGC 59.582 34.615 15.66 12.57 0.00 4.06
3187 5556 4.085107 AGTTGAATTTCGAAAAACATGCGC 60.085 37.500 15.66 0.00 0.00 6.09
3190 5559 1.272114 TTTCGAAAAACATGCGCGCC 61.272 50.000 30.77 11.42 0.00 6.53
3211 5580 4.154942 CCTTATTCATTGGAATGGAGGGG 58.845 47.826 11.04 0.00 43.47 4.79
3225 5594 3.675613 TGGAGGGGGTATGTATGTGAAT 58.324 45.455 0.00 0.00 0.00 2.57
3226 5595 3.394274 TGGAGGGGGTATGTATGTGAATG 59.606 47.826 0.00 0.00 0.00 2.67
3227 5596 3.650942 GGAGGGGGTATGTATGTGAATGA 59.349 47.826 0.00 0.00 0.00 2.57
3228 5597 4.104102 GGAGGGGGTATGTATGTGAATGAA 59.896 45.833 0.00 0.00 0.00 2.57
3229 5598 5.048846 AGGGGGTATGTATGTGAATGAAC 57.951 43.478 0.00 0.00 0.00 3.18
3277 5651 8.420222 CCATGGGCTTCTCTATAGTATCATAAG 58.580 40.741 2.85 0.00 0.00 1.73
3314 5688 6.340962 AGTGCCCTTTTAGGTTTATTTGTC 57.659 37.500 0.00 0.00 31.93 3.18
3320 5694 8.361889 GCCCTTTTAGGTTTATTTGTCTTTGTA 58.638 33.333 0.00 0.00 31.93 2.41
3373 5747 1.850377 TTGCGCATTGACAAAACAGG 58.150 45.000 12.75 0.00 0.00 4.00
3379 5753 4.550639 GCGCATTGACAAAACAGGAAAAAG 60.551 41.667 0.30 0.00 0.00 2.27
3470 5844 3.881937 AACTACGTGGTAATCCCTCAC 57.118 47.619 4.50 0.00 0.00 3.51
3481 5855 4.094442 GGTAATCCCTCACATTGACGAAAC 59.906 45.833 0.00 0.00 0.00 2.78
3483 5857 3.417069 TCCCTCACATTGACGAAACAT 57.583 42.857 0.00 0.00 0.00 2.71
3485 5859 4.900684 TCCCTCACATTGACGAAACATAA 58.099 39.130 0.00 0.00 0.00 1.90
3486 5860 5.309638 TCCCTCACATTGACGAAACATAAA 58.690 37.500 0.00 0.00 0.00 1.40
3487 5861 5.765677 TCCCTCACATTGACGAAACATAAAA 59.234 36.000 0.00 0.00 0.00 1.52
3488 5862 6.072728 TCCCTCACATTGACGAAACATAAAAG 60.073 38.462 0.00 0.00 0.00 2.27
3489 5863 6.072728 CCCTCACATTGACGAAACATAAAAGA 60.073 38.462 0.00 0.00 0.00 2.52
3490 5864 7.359595 CCTCACATTGACGAAACATAAAAGAA 58.640 34.615 0.00 0.00 0.00 2.52
3536 5910 2.137523 CATTGCCCAACAAAGACAAGC 58.862 47.619 0.00 0.00 42.86 4.01
3537 5911 0.463620 TTGCCCAACAAAGACAAGCC 59.536 50.000 0.00 0.00 34.56 4.35
3540 5914 0.758685 CCCAACAAAGACAAGCCCCA 60.759 55.000 0.00 0.00 0.00 4.96
3547 5921 3.454082 ACAAAGACAAGCCCCAAAAATGA 59.546 39.130 0.00 0.00 0.00 2.57
3553 5927 6.836242 AGACAAGCCCCAAAAATGAATAAAA 58.164 32.000 0.00 0.00 0.00 1.52
3562 5936 7.669304 CCCCAAAAATGAATAAAAGGGATGTTT 59.331 33.333 0.00 0.00 37.22 2.83
3563 5937 9.076781 CCCAAAAATGAATAAAAGGGATGTTTT 57.923 29.630 0.00 0.00 37.22 2.43
3583 5957 3.546002 TTTTTCGAAGGTACGCCAATG 57.454 42.857 0.00 0.00 37.19 2.82
3584 5958 1.444836 TTTCGAAGGTACGCCAATGG 58.555 50.000 0.00 0.00 37.19 3.16
3585 5959 1.022451 TTCGAAGGTACGCCAATGGC 61.022 55.000 15.52 15.52 46.75 4.40
3604 5978 5.794726 TGGCGTACCATAGCTTTATAGAA 57.205 39.130 0.00 0.00 42.67 2.10
3605 5979 5.779922 TGGCGTACCATAGCTTTATAGAAG 58.220 41.667 0.00 0.00 42.67 2.85
3606 5980 5.169295 GGCGTACCATAGCTTTATAGAAGG 58.831 45.833 0.00 0.00 35.26 3.46
3607 5981 5.047519 GGCGTACCATAGCTTTATAGAAGGA 60.048 44.000 0.00 0.00 35.26 3.36
3608 5982 6.094061 GCGTACCATAGCTTTATAGAAGGAG 58.906 44.000 0.00 0.00 0.00 3.69
3609 5983 6.072064 GCGTACCATAGCTTTATAGAAGGAGA 60.072 42.308 0.00 0.00 0.00 3.71
3610 5984 7.531716 CGTACCATAGCTTTATAGAAGGAGAG 58.468 42.308 0.00 0.00 0.00 3.20
3611 5985 7.390996 CGTACCATAGCTTTATAGAAGGAGAGA 59.609 40.741 0.00 0.00 0.00 3.10
3612 5986 9.080097 GTACCATAGCTTTATAGAAGGAGAGAA 57.920 37.037 0.00 0.00 0.00 2.87
3613 5987 8.554490 ACCATAGCTTTATAGAAGGAGAGAAA 57.446 34.615 0.00 0.00 0.00 2.52
3614 5988 8.993424 ACCATAGCTTTATAGAAGGAGAGAAAA 58.007 33.333 0.00 0.00 0.00 2.29
3627 6001 9.261035 AGAAGGAGAGAAAATATGTACAAGAGA 57.739 33.333 0.00 0.00 0.00 3.10
3628 6002 9.528018 GAAGGAGAGAAAATATGTACAAGAGAG 57.472 37.037 0.00 0.00 0.00 3.20
3629 6003 8.830915 AGGAGAGAAAATATGTACAAGAGAGA 57.169 34.615 0.00 0.00 0.00 3.10
3630 6004 9.432982 AGGAGAGAAAATATGTACAAGAGAGAT 57.567 33.333 0.00 0.00 0.00 2.75
3642 6016 8.610248 TGTACAAGAGAGATATGTAGCTAGTC 57.390 38.462 0.00 0.00 30.70 2.59
3643 6017 8.211629 TGTACAAGAGAGATATGTAGCTAGTCA 58.788 37.037 0.00 0.00 30.70 3.41
3644 6018 7.504924 ACAAGAGAGATATGTAGCTAGTCAC 57.495 40.000 0.00 0.00 0.00 3.67
3645 6019 6.203915 ACAAGAGAGATATGTAGCTAGTCACG 59.796 42.308 0.00 0.00 0.00 4.35
3646 6020 5.860611 AGAGAGATATGTAGCTAGTCACGT 58.139 41.667 0.00 0.00 0.00 4.49
3647 6021 5.699001 AGAGAGATATGTAGCTAGTCACGTG 59.301 44.000 9.94 9.94 0.00 4.49
3648 6022 4.757657 AGAGATATGTAGCTAGTCACGTGG 59.242 45.833 17.00 0.00 0.00 4.94
3649 6023 3.253677 AGATATGTAGCTAGTCACGTGGC 59.746 47.826 13.44 13.44 0.00 5.01
3650 6024 0.460311 ATGTAGCTAGTCACGTGGCC 59.540 55.000 18.18 7.31 0.00 5.36
3651 6025 0.896479 TGTAGCTAGTCACGTGGCCA 60.896 55.000 18.18 0.00 0.00 5.36
3652 6026 0.458025 GTAGCTAGTCACGTGGCCAC 60.458 60.000 26.78 26.78 0.00 5.01
3653 6027 0.896479 TAGCTAGTCACGTGGCCACA 60.896 55.000 34.16 13.79 0.00 4.17
3654 6028 1.079127 GCTAGTCACGTGGCCACAT 60.079 57.895 34.16 19.35 0.00 3.21
3655 6029 1.361668 GCTAGTCACGTGGCCACATG 61.362 60.000 34.16 30.16 39.55 3.21
3657 6031 0.037697 TAGTCACGTGGCCACATGTC 60.038 55.000 34.16 26.64 44.78 3.06
3658 6032 2.356913 TCACGTGGCCACATGTCG 60.357 61.111 34.16 22.59 44.78 4.35
3659 6033 2.356913 CACGTGGCCACATGTCGA 60.357 61.111 34.16 0.00 44.78 4.20
3660 6034 2.357034 ACGTGGCCACATGTCGAC 60.357 61.111 34.16 9.11 43.13 4.20
3661 6035 3.118454 CGTGGCCACATGTCGACC 61.118 66.667 34.16 5.35 0.00 4.79
3662 6036 2.031919 GTGGCCACATGTCGACCA 59.968 61.111 31.23 0.47 0.00 4.02
3663 6037 2.034879 GTGGCCACATGTCGACCAG 61.035 63.158 31.23 7.98 0.00 4.00
3664 6038 2.436646 GGCCACATGTCGACCAGG 60.437 66.667 14.12 10.43 0.00 4.45
3665 6039 2.662596 GCCACATGTCGACCAGGA 59.337 61.111 14.12 0.00 0.00 3.86
3666 6040 1.741770 GCCACATGTCGACCAGGAC 60.742 63.158 14.12 2.87 37.45 3.85
3667 6041 1.079127 CCACATGTCGACCAGGACC 60.079 63.158 14.12 0.00 36.07 4.46
3668 6042 1.544825 CCACATGTCGACCAGGACCT 61.545 60.000 14.12 0.00 36.07 3.85
3669 6043 0.108615 CACATGTCGACCAGGACCTC 60.109 60.000 14.12 0.00 36.07 3.85
3670 6044 1.139734 CATGTCGACCAGGACCTCG 59.860 63.158 14.12 0.00 36.07 4.63
3671 6045 2.711922 ATGTCGACCAGGACCTCGC 61.712 63.158 14.12 0.00 36.07 5.03
3672 6046 4.131088 GTCGACCAGGACCTCGCC 62.131 72.222 3.51 0.00 0.00 5.54
3673 6047 4.361971 TCGACCAGGACCTCGCCT 62.362 66.667 0.00 0.00 39.37 5.52
3674 6048 3.827898 CGACCAGGACCTCGCCTC 61.828 72.222 0.00 0.00 35.66 4.70
3675 6049 3.462678 GACCAGGACCTCGCCTCC 61.463 72.222 0.00 0.00 35.66 4.30
3676 6050 4.316823 ACCAGGACCTCGCCTCCA 62.317 66.667 0.00 0.00 35.66 3.86
3677 6051 3.775654 CCAGGACCTCGCCTCCAC 61.776 72.222 0.00 0.00 35.66 4.02
3678 6052 2.681778 CAGGACCTCGCCTCCACT 60.682 66.667 0.00 0.00 35.66 4.00
3679 6053 2.363147 AGGACCTCGCCTCCACTC 60.363 66.667 0.00 0.00 30.76 3.51
3680 6054 3.462678 GGACCTCGCCTCCACTCC 61.463 72.222 0.00 0.00 0.00 3.85
3681 6055 2.680352 GACCTCGCCTCCACTCCA 60.680 66.667 0.00 0.00 0.00 3.86
3682 6056 2.997897 ACCTCGCCTCCACTCCAC 60.998 66.667 0.00 0.00 0.00 4.02
3683 6057 2.997315 CCTCGCCTCCACTCCACA 60.997 66.667 0.00 0.00 0.00 4.17
3684 6058 2.262915 CTCGCCTCCACTCCACAC 59.737 66.667 0.00 0.00 0.00 3.82
3685 6059 2.523168 TCGCCTCCACTCCACACA 60.523 61.111 0.00 0.00 0.00 3.72
3686 6060 2.357517 CGCCTCCACTCCACACAC 60.358 66.667 0.00 0.00 0.00 3.82
3687 6061 2.828868 GCCTCCACTCCACACACA 59.171 61.111 0.00 0.00 0.00 3.72
3688 6062 1.148273 GCCTCCACTCCACACACAA 59.852 57.895 0.00 0.00 0.00 3.33
3689 6063 1.166531 GCCTCCACTCCACACACAAC 61.167 60.000 0.00 0.00 0.00 3.32
3690 6064 0.180171 CCTCCACTCCACACACAACA 59.820 55.000 0.00 0.00 0.00 3.33
3691 6065 1.299541 CTCCACTCCACACACAACAC 58.700 55.000 0.00 0.00 0.00 3.32
3692 6066 0.908910 TCCACTCCACACACAACACT 59.091 50.000 0.00 0.00 0.00 3.55
3693 6067 1.134521 TCCACTCCACACACAACACTC 60.135 52.381 0.00 0.00 0.00 3.51
3694 6068 1.134401 CCACTCCACACACAACACTCT 60.134 52.381 0.00 0.00 0.00 3.24
3695 6069 2.102420 CCACTCCACACACAACACTCTA 59.898 50.000 0.00 0.00 0.00 2.43
3696 6070 3.244215 CCACTCCACACACAACACTCTAT 60.244 47.826 0.00 0.00 0.00 1.98
3697 6071 4.021456 CCACTCCACACACAACACTCTATA 60.021 45.833 0.00 0.00 0.00 1.31
3698 6072 5.337571 CCACTCCACACACAACACTCTATAT 60.338 44.000 0.00 0.00 0.00 0.86
3699 6073 5.578336 CACTCCACACACAACACTCTATATG 59.422 44.000 0.00 0.00 0.00 1.78
3700 6074 4.503910 TCCACACACAACACTCTATATGC 58.496 43.478 0.00 0.00 0.00 3.14
3701 6075 4.222810 TCCACACACAACACTCTATATGCT 59.777 41.667 0.00 0.00 0.00 3.79
3702 6076 5.420739 TCCACACACAACACTCTATATGCTA 59.579 40.000 0.00 0.00 0.00 3.49
3703 6077 5.520288 CCACACACAACACTCTATATGCTAC 59.480 44.000 0.00 0.00 0.00 3.58
3704 6078 6.333416 CACACACAACACTCTATATGCTACT 58.667 40.000 0.00 0.00 0.00 2.57
3705 6079 6.473778 CACACACAACACTCTATATGCTACTC 59.526 42.308 0.00 0.00 0.00 2.59
3706 6080 6.152831 ACACACAACACTCTATATGCTACTCA 59.847 38.462 0.00 0.00 0.00 3.41
3707 6081 7.035612 CACACAACACTCTATATGCTACTCAA 58.964 38.462 0.00 0.00 0.00 3.02
3708 6082 7.009631 CACACAACACTCTATATGCTACTCAAC 59.990 40.741 0.00 0.00 0.00 3.18
3709 6083 7.093727 ACACAACACTCTATATGCTACTCAACT 60.094 37.037 0.00 0.00 0.00 3.16
3710 6084 8.406297 CACAACACTCTATATGCTACTCAACTA 58.594 37.037 0.00 0.00 0.00 2.24
3711 6085 8.407064 ACAACACTCTATATGCTACTCAACTAC 58.593 37.037 0.00 0.00 0.00 2.73
3712 6086 8.406297 CAACACTCTATATGCTACTCAACTACA 58.594 37.037 0.00 0.00 0.00 2.74
3713 6087 8.698973 ACACTCTATATGCTACTCAACTACAT 57.301 34.615 0.00 0.00 0.00 2.29
3714 6088 8.572185 ACACTCTATATGCTACTCAACTACATG 58.428 37.037 0.00 0.00 0.00 3.21
3715 6089 7.540400 CACTCTATATGCTACTCAACTACATGC 59.460 40.741 0.00 0.00 0.00 4.06
3716 6090 7.450014 ACTCTATATGCTACTCAACTACATGCT 59.550 37.037 0.00 0.00 0.00 3.79
3717 6091 7.821652 TCTATATGCTACTCAACTACATGCTC 58.178 38.462 0.00 0.00 0.00 4.26
3718 6092 3.526931 TGCTACTCAACTACATGCTCC 57.473 47.619 0.00 0.00 0.00 4.70
3719 6093 2.831526 TGCTACTCAACTACATGCTCCA 59.168 45.455 0.00 0.00 0.00 3.86
3720 6094 3.190874 GCTACTCAACTACATGCTCCAC 58.809 50.000 0.00 0.00 0.00 4.02
3721 6095 3.118956 GCTACTCAACTACATGCTCCACT 60.119 47.826 0.00 0.00 0.00 4.00
3722 6096 3.601443 ACTCAACTACATGCTCCACTC 57.399 47.619 0.00 0.00 0.00 3.51
3723 6097 2.234908 ACTCAACTACATGCTCCACTCC 59.765 50.000 0.00 0.00 0.00 3.85
3724 6098 2.234661 CTCAACTACATGCTCCACTCCA 59.765 50.000 0.00 0.00 0.00 3.86
3725 6099 2.234661 TCAACTACATGCTCCACTCCAG 59.765 50.000 0.00 0.00 0.00 3.86
3726 6100 1.944177 ACTACATGCTCCACTCCAGT 58.056 50.000 0.00 0.00 0.00 4.00
3727 6101 1.827969 ACTACATGCTCCACTCCAGTC 59.172 52.381 0.00 0.00 0.00 3.51
3728 6102 0.817654 TACATGCTCCACTCCAGTCG 59.182 55.000 0.00 0.00 0.00 4.18
3729 6103 1.812922 CATGCTCCACTCCAGTCGC 60.813 63.158 0.00 0.00 0.00 5.19
3730 6104 1.986757 ATGCTCCACTCCAGTCGCT 60.987 57.895 0.00 0.00 0.00 4.93
3731 6105 1.954362 ATGCTCCACTCCAGTCGCTC 61.954 60.000 0.00 0.00 0.00 5.03
3732 6106 2.888863 CTCCACTCCAGTCGCTCC 59.111 66.667 0.00 0.00 0.00 4.70
3733 6107 3.057547 CTCCACTCCAGTCGCTCCG 62.058 68.421 0.00 0.00 0.00 4.63
3734 6108 4.135153 CCACTCCAGTCGCTCCGG 62.135 72.222 0.00 0.00 0.00 5.14
3735 6109 4.803426 CACTCCAGTCGCTCCGGC 62.803 72.222 0.00 0.00 0.00 6.13
3740 6114 4.379243 CAGTCGCTCCGGCCTGTT 62.379 66.667 0.00 0.00 34.44 3.16
3741 6115 3.626924 AGTCGCTCCGGCCTGTTT 61.627 61.111 0.00 0.00 34.44 2.83
3742 6116 3.119096 GTCGCTCCGGCCTGTTTC 61.119 66.667 0.00 0.00 34.44 2.78
3743 6117 4.388499 TCGCTCCGGCCTGTTTCC 62.388 66.667 0.00 0.00 34.44 3.13
3744 6118 4.697756 CGCTCCGGCCTGTTTCCA 62.698 66.667 0.00 0.00 34.44 3.53
3745 6119 2.747855 GCTCCGGCCTGTTTCCAG 60.748 66.667 0.00 0.00 38.50 3.86
3757 6131 3.146847 CTGTTTCCAGGTAACCAGTTCC 58.853 50.000 6.50 0.00 34.90 3.62
3758 6132 2.781174 TGTTTCCAGGTAACCAGTTCCT 59.219 45.455 6.50 0.00 37.17 3.36
3759 6133 3.146847 GTTTCCAGGTAACCAGTTCCTG 58.853 50.000 16.05 16.05 45.67 3.86
3766 6140 4.911390 AGGTAACCAGTTCCTGAAAGATG 58.089 43.478 0.00 0.00 32.44 2.90
3767 6141 4.010349 GGTAACCAGTTCCTGAAAGATGG 58.990 47.826 5.82 5.82 34.07 3.51
3768 6142 2.206576 ACCAGTTCCTGAAAGATGGC 57.793 50.000 6.85 0.00 34.07 4.40
3769 6143 1.272147 ACCAGTTCCTGAAAGATGGCC 60.272 52.381 0.00 0.00 34.07 5.36
3770 6144 1.005215 CCAGTTCCTGAAAGATGGCCT 59.995 52.381 3.32 0.00 34.07 5.19
3771 6145 2.363683 CAGTTCCTGAAAGATGGCCTC 58.636 52.381 3.32 0.00 34.07 4.70
3772 6146 1.283321 AGTTCCTGAAAGATGGCCTCC 59.717 52.381 3.32 0.00 34.07 4.30
3773 6147 0.253044 TTCCTGAAAGATGGCCTCCG 59.747 55.000 3.32 0.00 34.07 4.63
3774 6148 0.909610 TCCTGAAAGATGGCCTCCGT 60.910 55.000 3.32 0.00 34.07 4.69
3775 6149 0.462759 CCTGAAAGATGGCCTCCGTC 60.463 60.000 3.32 0.00 39.68 4.79
3776 6150 0.250234 CTGAAAGATGGCCTCCGTCA 59.750 55.000 3.32 5.00 41.68 4.35
3777 6151 0.036388 TGAAAGATGGCCTCCGTCAC 60.036 55.000 3.32 0.00 41.68 3.67
3778 6152 1.079127 AAAGATGGCCTCCGTCACG 60.079 57.895 3.32 0.00 41.68 4.35
3779 6153 3.665675 AAGATGGCCTCCGTCACGC 62.666 63.158 3.32 0.00 41.68 5.34
3785 6159 4.351938 CCTCCGTCACGCCGAACA 62.352 66.667 0.00 0.00 0.00 3.18
3786 6160 3.103911 CTCCGTCACGCCGAACAC 61.104 66.667 0.00 0.00 0.00 3.32
3787 6161 4.986587 TCCGTCACGCCGAACACG 62.987 66.667 0.00 0.00 0.00 4.49
3789 6163 3.749373 CGTCACGCCGAACACGTC 61.749 66.667 0.00 0.00 42.96 4.34
3790 6164 2.354305 GTCACGCCGAACACGTCT 60.354 61.111 0.00 0.00 42.96 4.18
3791 6165 1.081906 GTCACGCCGAACACGTCTA 60.082 57.895 0.00 0.00 42.96 2.59
3792 6166 0.661187 GTCACGCCGAACACGTCTAA 60.661 55.000 0.00 0.00 42.96 2.10
3793 6167 0.661187 TCACGCCGAACACGTCTAAC 60.661 55.000 0.00 0.00 42.96 2.34
3803 6177 2.879462 CGTCTAACGTGCCGCTCC 60.879 66.667 0.00 0.00 36.74 4.70
3804 6178 2.572284 GTCTAACGTGCCGCTCCT 59.428 61.111 0.00 0.00 0.00 3.69
3805 6179 1.805254 GTCTAACGTGCCGCTCCTA 59.195 57.895 0.00 0.00 0.00 2.94
3806 6180 0.525029 GTCTAACGTGCCGCTCCTAC 60.525 60.000 0.00 0.00 0.00 3.18
3807 6181 1.226888 CTAACGTGCCGCTCCTACC 60.227 63.158 0.00 0.00 0.00 3.18
3808 6182 1.940883 CTAACGTGCCGCTCCTACCA 61.941 60.000 0.00 0.00 0.00 3.25
3809 6183 1.534336 TAACGTGCCGCTCCTACCAA 61.534 55.000 0.00 0.00 0.00 3.67
3810 6184 2.047655 CGTGCCGCTCCTACCAAA 60.048 61.111 0.00 0.00 0.00 3.28
3811 6185 2.100631 CGTGCCGCTCCTACCAAAG 61.101 63.158 0.00 0.00 0.00 2.77
3812 6186 1.295423 GTGCCGCTCCTACCAAAGA 59.705 57.895 0.00 0.00 0.00 2.52
3813 6187 1.019805 GTGCCGCTCCTACCAAAGAC 61.020 60.000 0.00 0.00 0.00 3.01
3814 6188 1.192146 TGCCGCTCCTACCAAAGACT 61.192 55.000 0.00 0.00 0.00 3.24
3815 6189 0.460459 GCCGCTCCTACCAAAGACTC 60.460 60.000 0.00 0.00 0.00 3.36
3816 6190 1.187087 CCGCTCCTACCAAAGACTCT 58.813 55.000 0.00 0.00 0.00 3.24
3817 6191 1.135333 CCGCTCCTACCAAAGACTCTC 59.865 57.143 0.00 0.00 0.00 3.20
3818 6192 1.202200 CGCTCCTACCAAAGACTCTCG 60.202 57.143 0.00 0.00 0.00 4.04
3819 6193 1.470112 GCTCCTACCAAAGACTCTCGC 60.470 57.143 0.00 0.00 0.00 5.03
3820 6194 1.819288 CTCCTACCAAAGACTCTCGCA 59.181 52.381 0.00 0.00 0.00 5.10
3821 6195 2.428890 CTCCTACCAAAGACTCTCGCAT 59.571 50.000 0.00 0.00 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.467844 AAATGTGGTGCTCACTGCCA 60.468 50.000 11.00 0.00 46.20 4.92
1 2 0.675633 AAAATGTGGTGCTCACTGCC 59.324 50.000 11.00 0.00 46.20 4.85
2 3 1.610522 AGAAAATGTGGTGCTCACTGC 59.389 47.619 11.00 0.00 46.20 4.40
3 4 2.227388 GGAGAAAATGTGGTGCTCACTG 59.773 50.000 11.00 0.00 46.20 3.66
4 5 2.508526 GGAGAAAATGTGGTGCTCACT 58.491 47.619 11.00 0.00 46.20 3.41
5 6 1.541588 GGGAGAAAATGTGGTGCTCAC 59.458 52.381 4.23 4.23 46.23 3.51
6 7 1.881925 CGGGAGAAAATGTGGTGCTCA 60.882 52.381 0.00 0.00 0.00 4.26
7 8 0.804989 CGGGAGAAAATGTGGTGCTC 59.195 55.000 0.00 0.00 0.00 4.26
8 9 0.110486 ACGGGAGAAAATGTGGTGCT 59.890 50.000 0.00 0.00 0.00 4.40
9 10 0.521735 GACGGGAGAAAATGTGGTGC 59.478 55.000 0.00 0.00 0.00 5.01
10 11 1.165270 GGACGGGAGAAAATGTGGTG 58.835 55.000 0.00 0.00 0.00 4.17
11 12 0.768622 TGGACGGGAGAAAATGTGGT 59.231 50.000 0.00 0.00 0.00 4.16
12 13 1.745087 CATGGACGGGAGAAAATGTGG 59.255 52.381 0.00 0.00 0.00 4.17
13 14 2.420022 GACATGGACGGGAGAAAATGTG 59.580 50.000 0.00 0.00 32.63 3.21
14 15 2.618045 GGACATGGACGGGAGAAAATGT 60.618 50.000 0.00 0.00 34.17 2.71
15 16 2.017049 GGACATGGACGGGAGAAAATG 58.983 52.381 0.00 0.00 0.00 2.32
16 17 1.406887 CGGACATGGACGGGAGAAAAT 60.407 52.381 0.00 0.00 0.00 1.82
17 18 0.036765 CGGACATGGACGGGAGAAAA 60.037 55.000 0.00 0.00 0.00 2.29
18 19 1.189524 ACGGACATGGACGGGAGAAA 61.190 55.000 14.40 0.00 0.00 2.52
19 20 1.601419 GACGGACATGGACGGGAGAA 61.601 60.000 14.40 0.00 0.00 2.87
20 21 2.036731 ACGGACATGGACGGGAGA 59.963 61.111 14.40 0.00 0.00 3.71
21 22 2.494918 GACGGACATGGACGGGAG 59.505 66.667 14.40 0.00 0.00 4.30
22 23 3.445687 CGACGGACATGGACGGGA 61.446 66.667 14.40 0.00 0.00 5.14
23 24 3.695022 GACGACGGACATGGACGGG 62.695 68.421 14.40 8.91 0.00 5.28
24 25 2.202570 GACGACGGACATGGACGG 60.203 66.667 14.40 7.09 0.00 4.79
25 26 0.457853 ATTGACGACGGACATGGACG 60.458 55.000 9.36 9.36 0.00 4.79
26 27 2.159282 AGTATTGACGACGGACATGGAC 60.159 50.000 0.00 0.00 0.00 4.02
27 28 2.097036 AGTATTGACGACGGACATGGA 58.903 47.619 0.00 0.00 0.00 3.41
28 29 2.579207 AGTATTGACGACGGACATGG 57.421 50.000 0.00 0.00 0.00 3.66
29 30 2.858344 GGAAGTATTGACGACGGACATG 59.142 50.000 0.00 0.00 0.00 3.21
30 31 2.758979 AGGAAGTATTGACGACGGACAT 59.241 45.455 0.00 0.00 0.00 3.06
31 32 2.163010 GAGGAAGTATTGACGACGGACA 59.837 50.000 0.00 0.00 0.00 4.02
32 33 2.479219 GGAGGAAGTATTGACGACGGAC 60.479 54.545 0.00 0.00 0.00 4.79
33 34 1.747355 GGAGGAAGTATTGACGACGGA 59.253 52.381 0.00 0.00 0.00 4.69
34 35 1.533338 CGGAGGAAGTATTGACGACGG 60.533 57.143 0.00 0.00 0.00 4.79
35 36 1.131883 ACGGAGGAAGTATTGACGACG 59.868 52.381 0.00 0.00 0.00 5.12
36 37 2.935481 ACGGAGGAAGTATTGACGAC 57.065 50.000 0.00 0.00 0.00 4.34
37 38 6.698008 TTAATACGGAGGAAGTATTGACGA 57.302 37.500 10.71 0.00 42.63 4.20
38 39 7.760131 TTTTAATACGGAGGAAGTATTGACG 57.240 36.000 10.71 0.00 42.63 4.35
45 46 9.901172 AGACATTTATTTTAATACGGAGGAAGT 57.099 29.630 0.00 0.00 0.00 3.01
47 48 9.893634 TGAGACATTTATTTTAATACGGAGGAA 57.106 29.630 0.00 0.00 0.00 3.36
48 49 9.893634 TTGAGACATTTATTTTAATACGGAGGA 57.106 29.630 0.00 0.00 0.00 3.71
49 50 9.931210 GTTGAGACATTTATTTTAATACGGAGG 57.069 33.333 0.00 0.00 0.00 4.30
50 51 9.931210 GGTTGAGACATTTATTTTAATACGGAG 57.069 33.333 0.00 0.00 0.00 4.63
51 52 9.675464 AGGTTGAGACATTTATTTTAATACGGA 57.325 29.630 0.00 0.00 0.00 4.69
91 92 9.056005 TGTCTCGACTTTACACTAACTTTAGTA 57.944 33.333 1.30 0.00 41.82 1.82
92 93 7.859875 GTGTCTCGACTTTACACTAACTTTAGT 59.140 37.037 7.84 0.00 44.42 2.24
93 94 8.213546 GTGTCTCGACTTTACACTAACTTTAG 57.786 38.462 7.84 0.00 40.25 1.85
122 123 5.761234 TGAGGAAAAGCGCTACTAAGAAAAA 59.239 36.000 12.05 0.00 0.00 1.94
123 124 5.302360 TGAGGAAAAGCGCTACTAAGAAAA 58.698 37.500 12.05 0.00 0.00 2.29
124 125 4.890088 TGAGGAAAAGCGCTACTAAGAAA 58.110 39.130 12.05 0.00 0.00 2.52
147 148 1.657751 GCTCCAAAACGATGCCCCTC 61.658 60.000 0.00 0.00 0.00 4.30
148 149 1.678970 GCTCCAAAACGATGCCCCT 60.679 57.895 0.00 0.00 0.00 4.79
268 269 2.887568 GTCGACCTCCTGCGCATG 60.888 66.667 12.24 8.91 0.00 4.06
269 270 4.498520 CGTCGACCTCCTGCGCAT 62.499 66.667 12.24 0.00 0.00 4.73
482 497 1.003718 ACCTCGCAGCCAAACCTAC 60.004 57.895 0.00 0.00 0.00 3.18
515 530 1.061812 AGGGATGCTGATAGTCTGGGT 60.062 52.381 0.00 0.00 0.00 4.51
546 561 5.148651 ACAAAAGTGTCGCTACTCCTATT 57.851 39.130 0.00 0.00 29.49 1.73
594 609 7.871463 ACAAGACCTTACAAAGTCATACTACAC 59.129 37.037 0.00 0.00 0.00 2.90
598 613 6.706270 CACACAAGACCTTACAAAGTCATACT 59.294 38.462 0.00 0.00 0.00 2.12
651 666 0.745486 CCGGCATCTGCATCTGAACA 60.745 55.000 4.33 0.00 44.36 3.18
701 717 0.535797 GTACTCCCTCCGTCCCAAAG 59.464 60.000 0.00 0.00 0.00 2.77
702 718 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
703 719 0.324091 GAGTACTCCCTCCGTCCCAA 60.324 60.000 12.13 0.00 0.00 4.12
704 720 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
705 721 0.106116 ATGAGTACTCCCTCCGTCCC 60.106 60.000 20.11 0.00 0.00 4.46
706 722 1.777941 AATGAGTACTCCCTCCGTCC 58.222 55.000 20.11 0.00 0.00 4.79
707 723 3.553904 ACTAATGAGTACTCCCTCCGTC 58.446 50.000 20.11 0.00 32.65 4.79
708 724 3.666345 ACTAATGAGTACTCCCTCCGT 57.334 47.619 20.11 8.04 32.65 4.69
709 725 6.651975 AATAACTAATGAGTACTCCCTCCG 57.348 41.667 20.11 7.45 33.58 4.63
710 726 9.536510 AGATAATAACTAATGAGTACTCCCTCC 57.463 37.037 20.11 0.00 33.58 4.30
724 740 9.967346 CGTGAATCTGGAGAAGATAATAACTAA 57.033 33.333 0.00 0.00 45.37 2.24
725 741 8.082852 GCGTGAATCTGGAGAAGATAATAACTA 58.917 37.037 0.00 0.00 45.37 2.24
726 742 6.926272 GCGTGAATCTGGAGAAGATAATAACT 59.074 38.462 0.00 0.00 45.37 2.24
727 743 6.926272 AGCGTGAATCTGGAGAAGATAATAAC 59.074 38.462 0.00 0.00 45.37 1.89
884 907 0.721718 GGAAGACCTCGCGTGATTTG 59.278 55.000 10.21 0.00 0.00 2.32
897 920 0.107945 CACAGGCTGGCTAGGAAGAC 60.108 60.000 20.34 0.00 0.00 3.01
928 951 0.179056 ACTATGGGTATGCGTGTGGC 60.179 55.000 0.00 0.00 43.96 5.01
944 967 5.864418 ATAGGATCGTAAACCTTGCACTA 57.136 39.130 0.00 0.00 37.68 2.74
988 1011 0.319900 TTCTTCTCACCTGCGTCTGC 60.320 55.000 0.00 0.00 43.20 4.26
1028 1051 0.238817 CGATTCCTCCTCGATCGACC 59.761 60.000 15.15 0.00 43.86 4.79
1143 1197 0.744281 GTGCCCCGGAAACCATTATG 59.256 55.000 0.73 0.00 0.00 1.90
1345 1402 0.965866 TCATTCCGTCACCTCGCTCT 60.966 55.000 0.00 0.00 0.00 4.09
1359 1416 2.711711 AGCATGCGGATGGTCATTC 58.288 52.632 16.35 0.00 35.27 2.67
1478 1559 4.933064 GCTCCGAGACCGATGGCG 62.933 72.222 0.00 0.00 38.22 5.69
1565 1646 2.101125 CAACACGTGCAAGAACGAAAG 58.899 47.619 17.22 0.00 46.49 2.62
1567 1648 1.061421 GTCAACACGTGCAAGAACGAA 59.939 47.619 17.22 0.00 46.49 3.85
1568 1649 0.648441 GTCAACACGTGCAAGAACGA 59.352 50.000 17.22 0.00 46.49 3.85
1570 1651 2.348591 GCTAGTCAACACGTGCAAGAAC 60.349 50.000 17.22 7.23 0.00 3.01
1695 2028 1.343789 TGATTTGACCGGTCGTGGTTA 59.656 47.619 28.70 8.10 44.01 2.85
1715 2048 3.191371 GCATTTGACTGGTTTCCTCGATT 59.809 43.478 0.00 0.00 0.00 3.34
1728 2072 0.811616 GCCCTCGATCGCATTTGACT 60.812 55.000 11.09 0.00 0.00 3.41
1745 2089 1.227674 CCCATGTAGAAGGCGAGCC 60.228 63.158 5.89 5.89 0.00 4.70
1767 2572 4.315803 CCGACAAACCTGATCAACTAAGT 58.684 43.478 0.00 0.00 0.00 2.24
1769 2574 3.071479 GCCGACAAACCTGATCAACTAA 58.929 45.455 0.00 0.00 0.00 2.24
1780 2585 0.234884 CTTCTTGACGCCGACAAACC 59.765 55.000 3.34 0.00 0.00 3.27
1784 2589 1.372997 GAGCTTCTTGACGCCGACA 60.373 57.895 0.00 0.00 0.00 4.35
1832 2637 2.762327 GACGATACCCTAAACACTGGGA 59.238 50.000 4.93 0.00 46.15 4.37
1849 2654 1.000060 CTAACCACCAGAAACGGACGA 60.000 52.381 0.00 0.00 0.00 4.20
1850 2655 1.425412 CTAACCACCAGAAACGGACG 58.575 55.000 0.00 0.00 0.00 4.79
1851 2656 1.154197 GCTAACCACCAGAAACGGAC 58.846 55.000 0.00 0.00 0.00 4.79
1875 2680 1.157585 GCGAGGTTTCCCTTCAAGTC 58.842 55.000 0.00 0.00 42.86 3.01
1925 2730 2.669229 TCGCGGTGACACGGTAGA 60.669 61.111 6.13 10.94 36.32 2.59
1977 2790 0.322322 TTCGTAAGGGTTGGCGACAT 59.678 50.000 7.28 0.00 38.12 3.06
1983 2796 2.238898 AGGAGGATTTCGTAAGGGTTGG 59.761 50.000 0.00 0.00 38.47 3.77
2012 4332 5.998363 GGAAGGAGTGAATAAACTCTTGTGT 59.002 40.000 4.50 0.00 44.98 3.72
2034 4359 1.071699 CGAGGGTCAAAAACTCAGGGA 59.928 52.381 0.00 0.00 0.00 4.20
2040 4365 1.228459 GCCCCGAGGGTCAAAAACT 60.228 57.895 7.48 0.00 46.51 2.66
2055 4380 1.049289 ATCCAACCGTCCTAGAGCCC 61.049 60.000 0.00 0.00 0.00 5.19
2061 4386 2.168458 TCCATGATCCAACCGTCCTA 57.832 50.000 0.00 0.00 0.00 2.94
2067 4392 3.541632 ACGTTGTATCCATGATCCAACC 58.458 45.455 0.00 0.00 36.14 3.77
2134 4459 2.855180 CAATTTTTCGCACTCGCATCT 58.145 42.857 0.00 0.00 38.40 2.90
2171 4496 6.149474 ACATACAAAGTATGGTTCTTCAGCAC 59.851 38.462 18.27 0.00 35.09 4.40
2182 4507 9.436957 ACTCTGTTCTAAACATACAAAGTATGG 57.563 33.333 18.27 4.19 41.26 2.74
2345 4677 2.106683 GGGCGTATGTGTGGTCTGC 61.107 63.158 0.00 0.00 0.00 4.26
2372 4707 6.866248 GGTCTTTTACATTTTGGGTACATGTG 59.134 38.462 9.11 0.00 33.19 3.21
2379 4714 6.295067 GCACTATGGTCTTTTACATTTTGGGT 60.295 38.462 0.00 0.00 0.00 4.51
2383 4718 6.909550 TGGCACTATGGTCTTTTACATTTT 57.090 33.333 0.00 0.00 0.00 1.82
2390 4726 4.666512 AGATGTTGGCACTATGGTCTTTT 58.333 39.130 0.00 0.00 0.00 2.27
2400 4736 4.560311 CGATATAGCAGAGATGTTGGCACT 60.560 45.833 0.00 0.00 0.00 4.40
2401 4737 3.677121 CGATATAGCAGAGATGTTGGCAC 59.323 47.826 0.00 0.00 0.00 5.01
2450 4786 4.391830 GTGAATATCTCGTTGAACTTGGCA 59.608 41.667 0.00 0.00 0.00 4.92
2533 4869 3.744719 CGTCCTCCCTGTTCGCGA 61.745 66.667 3.71 3.71 0.00 5.87
2544 4880 1.009900 CTATGTCGTCGCCGTCCTC 60.010 63.158 0.00 0.00 35.01 3.71
2639 4979 1.261089 CGTTTTTAAGCAACCGTCGGA 59.739 47.619 20.51 0.00 0.00 4.55
2694 5034 2.743928 GTCCTTGGCGAGGCTGTG 60.744 66.667 16.55 0.00 45.87 3.66
2791 5131 5.790593 TGCTTGGTTAATTTCGAGACTACT 58.209 37.500 0.00 0.00 0.00 2.57
2792 5132 6.312918 TCATGCTTGGTTAATTTCGAGACTAC 59.687 38.462 0.00 0.00 0.00 2.73
2794 5134 5.245531 TCATGCTTGGTTAATTTCGAGACT 58.754 37.500 0.00 0.00 0.00 3.24
2836 5191 6.670927 GCAGTGACTTTCATAATCAACGAGAC 60.671 42.308 0.00 0.00 0.00 3.36
2838 5193 5.120674 TGCAGTGACTTTCATAATCAACGAG 59.879 40.000 0.00 0.00 0.00 4.18
2848 5203 6.985117 ACAATAATTGTGCAGTGACTTTCAT 58.015 32.000 0.00 0.00 43.48 2.57
2850 5205 6.437928 TGACAATAATTGTGCAGTGACTTTC 58.562 36.000 0.00 0.00 45.52 2.62
2892 5254 7.667043 TGTATTTCAGTGGACTGTCAAATAC 57.333 36.000 22.52 22.52 44.12 1.89
2905 5267 5.929697 TGAAGCTCAGTTGTATTTCAGTG 57.070 39.130 0.00 0.00 0.00 3.66
2918 5280 9.467258 TTGTTCTAAAATTTGAATGAAGCTCAG 57.533 29.630 0.00 0.00 0.00 3.35
2994 5357 1.024271 ATGCGCGCCTTATTCATTGT 58.976 45.000 30.77 0.00 0.00 2.71
2995 5358 1.401530 CATGCGCGCCTTATTCATTG 58.598 50.000 30.77 8.05 0.00 2.82
3008 5371 0.994263 GGTCTTTGAAATGCATGCGC 59.006 50.000 14.09 0.00 39.24 6.09
3029 5392 9.868277 CTGCATTTGGTTGGTCTAATTAATTTA 57.132 29.630 5.91 0.00 0.00 1.40
3030 5393 8.374743 ACTGCATTTGGTTGGTCTAATTAATTT 58.625 29.630 5.91 0.00 0.00 1.82
3031 5394 7.906327 ACTGCATTTGGTTGGTCTAATTAATT 58.094 30.769 5.89 5.89 0.00 1.40
3034 5403 6.909550 AACTGCATTTGGTTGGTCTAATTA 57.090 33.333 0.00 0.00 0.00 1.40
3112 5481 9.739276 TGAGTTTTTGTGACCTCAGAATTATAT 57.261 29.630 0.00 0.00 0.00 0.86
3115 5484 9.739276 ATATGAGTTTTTGTGACCTCAGAATTA 57.261 29.630 0.00 0.00 0.00 1.40
3120 5489 9.778993 CAATAATATGAGTTTTTGTGACCTCAG 57.221 33.333 0.00 0.00 0.00 3.35
3145 5514 6.693466 TCAACTCTGACCGTAAATTACATCA 58.307 36.000 3.91 5.61 0.00 3.07
3175 5544 1.908065 ATAAGGCGCGCATGTTTTTC 58.092 45.000 34.42 12.85 0.00 2.29
3185 5554 2.605338 CCATTCCAATGAATAAGGCGCG 60.605 50.000 0.00 0.00 39.20 6.86
3187 5556 3.254166 CCTCCATTCCAATGAATAAGGCG 59.746 47.826 0.56 0.00 39.20 5.52
3190 5559 4.154942 CCCCCTCCATTCCAATGAATAAG 58.845 47.826 0.56 0.00 39.20 1.73
3211 5580 8.677300 ACAGAAATGTTCATTCACATACATACC 58.323 33.333 0.00 0.00 36.30 2.73
3225 5594 9.317936 GAGATACATACATGACAGAAATGTTCA 57.682 33.333 0.00 0.00 39.05 3.18
3226 5595 8.768955 GGAGATACATACATGACAGAAATGTTC 58.231 37.037 0.00 1.61 39.05 3.18
3227 5596 8.267183 TGGAGATACATACATGACAGAAATGTT 58.733 33.333 0.00 0.00 39.05 2.71
3228 5597 7.795047 TGGAGATACATACATGACAGAAATGT 58.205 34.615 0.00 2.21 41.14 2.71
3229 5598 8.718734 CATGGAGATACATACATGACAGAAATG 58.281 37.037 0.00 0.00 42.39 2.32
3277 5651 4.584327 AGGGCACTTTCATTTGTGTTAC 57.416 40.909 0.00 0.00 36.63 2.50
3294 5668 7.214381 ACAAAGACAAATAAACCTAAAAGGGC 58.786 34.615 0.00 0.00 40.58 5.19
3373 5747 9.927668 TCCATTTAGTTTCATTGGATCTTTTTC 57.072 29.630 0.00 0.00 31.67 2.29
3379 5753 9.219603 TCGATATCCATTTAGTTTCATTGGATC 57.780 33.333 6.05 0.00 44.13 3.36
3403 5777 8.346476 TGTGTTTGTTTGGAAAAAGATAATCG 57.654 30.769 0.00 0.00 0.00 3.34
3425 5799 3.326836 ACCTTTTGTGTTGGGTTTGTG 57.673 42.857 0.00 0.00 0.00 3.33
3536 5910 6.720309 ACATCCCTTTTATTCATTTTTGGGG 58.280 36.000 0.00 0.00 34.47 4.96
3537 5911 8.634335 AAACATCCCTTTTATTCATTTTTGGG 57.366 30.769 0.00 0.00 34.98 4.12
3563 5937 2.226912 CCATTGGCGTACCTTCGAAAAA 59.773 45.455 0.00 0.00 36.63 1.94
3564 5938 1.807742 CCATTGGCGTACCTTCGAAAA 59.192 47.619 0.00 0.00 36.63 2.29
3565 5939 1.444836 CCATTGGCGTACCTTCGAAA 58.555 50.000 0.00 0.00 36.63 3.46
3566 5940 1.022451 GCCATTGGCGTACCTTCGAA 61.022 55.000 12.82 0.00 39.62 3.71
3567 5941 1.448893 GCCATTGGCGTACCTTCGA 60.449 57.895 12.82 0.00 39.62 3.71
3568 5942 3.098555 GCCATTGGCGTACCTTCG 58.901 61.111 12.82 0.00 39.62 3.79
3583 5957 5.047519 TCCTTCTATAAAGCTATGGTACGCC 60.048 44.000 0.00 0.00 0.00 5.68
3584 5958 6.022163 TCCTTCTATAAAGCTATGGTACGC 57.978 41.667 0.00 0.00 0.00 4.42
3585 5959 7.390996 TCTCTCCTTCTATAAAGCTATGGTACG 59.609 40.741 0.00 0.00 0.00 3.67
3586 5960 8.638629 TCTCTCCTTCTATAAAGCTATGGTAC 57.361 38.462 0.00 0.00 0.00 3.34
3587 5961 9.656323 TTTCTCTCCTTCTATAAAGCTATGGTA 57.344 33.333 0.00 0.00 0.00 3.25
3588 5962 8.554490 TTTCTCTCCTTCTATAAAGCTATGGT 57.446 34.615 0.00 0.00 0.00 3.55
3601 5975 9.261035 TCTCTTGTACATATTTTCTCTCCTTCT 57.739 33.333 0.00 0.00 0.00 2.85
3602 5976 9.528018 CTCTCTTGTACATATTTTCTCTCCTTC 57.472 37.037 0.00 0.00 0.00 3.46
3603 5977 9.261035 TCTCTCTTGTACATATTTTCTCTCCTT 57.739 33.333 0.00 0.00 0.00 3.36
3604 5978 8.830915 TCTCTCTTGTACATATTTTCTCTCCT 57.169 34.615 0.00 0.00 0.00 3.69
3616 5990 9.226606 GACTAGCTACATATCTCTCTTGTACAT 57.773 37.037 0.00 0.00 0.00 2.29
3617 5991 8.211629 TGACTAGCTACATATCTCTCTTGTACA 58.788 37.037 0.00 0.00 0.00 2.90
3618 5992 8.500773 GTGACTAGCTACATATCTCTCTTGTAC 58.499 40.741 0.00 0.00 0.00 2.90
3619 5993 7.385478 CGTGACTAGCTACATATCTCTCTTGTA 59.615 40.741 0.00 0.00 0.00 2.41
3620 5994 6.203915 CGTGACTAGCTACATATCTCTCTTGT 59.796 42.308 0.00 0.00 0.00 3.16
3621 5995 6.203915 ACGTGACTAGCTACATATCTCTCTTG 59.796 42.308 0.00 0.00 0.00 3.02
3622 5996 6.203915 CACGTGACTAGCTACATATCTCTCTT 59.796 42.308 10.90 0.00 0.00 2.85
3623 5997 5.699001 CACGTGACTAGCTACATATCTCTCT 59.301 44.000 10.90 0.00 0.00 3.10
3624 5998 5.106869 CCACGTGACTAGCTACATATCTCTC 60.107 48.000 19.30 0.00 0.00 3.20
3625 5999 4.757657 CCACGTGACTAGCTACATATCTCT 59.242 45.833 19.30 0.00 0.00 3.10
3626 6000 4.614078 GCCACGTGACTAGCTACATATCTC 60.614 50.000 19.30 0.00 0.00 2.75
3627 6001 3.253677 GCCACGTGACTAGCTACATATCT 59.746 47.826 19.30 0.00 0.00 1.98
3628 6002 3.566523 GCCACGTGACTAGCTACATATC 58.433 50.000 19.30 0.00 0.00 1.63
3629 6003 2.296471 GGCCACGTGACTAGCTACATAT 59.704 50.000 19.30 0.00 0.00 1.78
3630 6004 1.679680 GGCCACGTGACTAGCTACATA 59.320 52.381 19.30 0.00 0.00 2.29
3631 6005 0.460311 GGCCACGTGACTAGCTACAT 59.540 55.000 19.30 0.00 0.00 2.29
3632 6006 0.896479 TGGCCACGTGACTAGCTACA 60.896 55.000 19.30 3.33 0.00 2.74
3633 6007 0.458025 GTGGCCACGTGACTAGCTAC 60.458 60.000 22.49 15.71 0.00 3.58
3634 6008 0.896479 TGTGGCCACGTGACTAGCTA 60.896 55.000 30.07 6.82 0.00 3.32
3635 6009 1.544825 ATGTGGCCACGTGACTAGCT 61.545 55.000 29.84 3.08 0.00 3.32
3636 6010 1.079127 ATGTGGCCACGTGACTAGC 60.079 57.895 29.84 11.77 0.00 3.42
3643 6017 2.357034 GTCGACATGTGGCCACGT 60.357 61.111 30.07 27.83 0.00 4.49
3644 6018 3.118454 GGTCGACATGTGGCCACG 61.118 66.667 30.07 19.43 0.00 4.94
3645 6019 2.031919 TGGTCGACATGTGGCCAC 59.968 61.111 29.67 29.67 0.00 5.01
3646 6020 2.347114 CTGGTCGACATGTGGCCA 59.653 61.111 18.91 17.11 0.00 5.36
3647 6021 2.436646 CCTGGTCGACATGTGGCC 60.437 66.667 18.91 7.56 0.00 5.36
3648 6022 1.741770 GTCCTGGTCGACATGTGGC 60.742 63.158 18.91 0.00 32.74 5.01
3649 6023 1.079127 GGTCCTGGTCGACATGTGG 60.079 63.158 18.91 12.74 34.24 4.17
3650 6024 0.108615 GAGGTCCTGGTCGACATGTG 60.109 60.000 18.91 2.55 34.24 3.21
3651 6025 1.595993 CGAGGTCCTGGTCGACATGT 61.596 60.000 18.91 0.00 38.50 3.21
3652 6026 1.139734 CGAGGTCCTGGTCGACATG 59.860 63.158 18.91 8.93 38.50 3.21
3653 6027 2.711922 GCGAGGTCCTGGTCGACAT 61.712 63.158 18.91 0.00 38.50 3.06
3654 6028 3.371063 GCGAGGTCCTGGTCGACA 61.371 66.667 18.91 2.63 38.50 4.35
3655 6029 4.131088 GGCGAGGTCCTGGTCGAC 62.131 72.222 7.13 7.13 38.50 4.20
3656 6030 4.361971 AGGCGAGGTCCTGGTCGA 62.362 66.667 9.12 0.00 38.50 4.20
3657 6031 3.827898 GAGGCGAGGTCCTGGTCG 61.828 72.222 0.00 0.00 36.38 4.79
3658 6032 3.462678 GGAGGCGAGGTCCTGGTC 61.463 72.222 0.00 0.00 36.38 4.02
3659 6033 4.316823 TGGAGGCGAGGTCCTGGT 62.317 66.667 0.00 0.00 36.38 4.00
3660 6034 3.775654 GTGGAGGCGAGGTCCTGG 61.776 72.222 0.00 0.00 36.38 4.45
3661 6035 2.681778 AGTGGAGGCGAGGTCCTG 60.682 66.667 0.00 0.00 36.38 3.86
3662 6036 2.363147 GAGTGGAGGCGAGGTCCT 60.363 66.667 0.00 0.00 39.67 3.85
3663 6037 3.462678 GGAGTGGAGGCGAGGTCC 61.463 72.222 0.00 0.00 34.31 4.46
3664 6038 2.680352 TGGAGTGGAGGCGAGGTC 60.680 66.667 0.00 0.00 0.00 3.85
3665 6039 2.997897 GTGGAGTGGAGGCGAGGT 60.998 66.667 0.00 0.00 0.00 3.85
3666 6040 2.997315 TGTGGAGTGGAGGCGAGG 60.997 66.667 0.00 0.00 0.00 4.63
3667 6041 2.262915 GTGTGGAGTGGAGGCGAG 59.737 66.667 0.00 0.00 0.00 5.03
3668 6042 2.523168 TGTGTGGAGTGGAGGCGA 60.523 61.111 0.00 0.00 0.00 5.54
3669 6043 2.357517 GTGTGTGGAGTGGAGGCG 60.358 66.667 0.00 0.00 0.00 5.52
3670 6044 1.148273 TTGTGTGTGGAGTGGAGGC 59.852 57.895 0.00 0.00 0.00 4.70
3671 6045 0.180171 TGTTGTGTGTGGAGTGGAGG 59.820 55.000 0.00 0.00 0.00 4.30
3672 6046 1.134401 AGTGTTGTGTGTGGAGTGGAG 60.134 52.381 0.00 0.00 0.00 3.86
3673 6047 0.908910 AGTGTTGTGTGTGGAGTGGA 59.091 50.000 0.00 0.00 0.00 4.02
3674 6048 1.134401 AGAGTGTTGTGTGTGGAGTGG 60.134 52.381 0.00 0.00 0.00 4.00
3675 6049 2.315925 AGAGTGTTGTGTGTGGAGTG 57.684 50.000 0.00 0.00 0.00 3.51
3676 6050 5.724328 CATATAGAGTGTTGTGTGTGGAGT 58.276 41.667 0.00 0.00 0.00 3.85
3677 6051 4.568359 GCATATAGAGTGTTGTGTGTGGAG 59.432 45.833 0.00 0.00 0.00 3.86
3678 6052 4.222810 AGCATATAGAGTGTTGTGTGTGGA 59.777 41.667 0.00 0.00 0.00 4.02
3679 6053 4.507710 AGCATATAGAGTGTTGTGTGTGG 58.492 43.478 0.00 0.00 0.00 4.17
3680 6054 6.333416 AGTAGCATATAGAGTGTTGTGTGTG 58.667 40.000 0.00 0.00 0.00 3.82
3681 6055 6.152831 TGAGTAGCATATAGAGTGTTGTGTGT 59.847 38.462 0.00 0.00 0.00 3.72
3682 6056 6.564328 TGAGTAGCATATAGAGTGTTGTGTG 58.436 40.000 0.00 0.00 0.00 3.82
3683 6057 6.775594 TGAGTAGCATATAGAGTGTTGTGT 57.224 37.500 0.00 0.00 0.00 3.72
3684 6058 7.261325 AGTTGAGTAGCATATAGAGTGTTGTG 58.739 38.462 0.00 0.00 0.00 3.33
3685 6059 7.411486 AGTTGAGTAGCATATAGAGTGTTGT 57.589 36.000 0.00 0.00 0.00 3.32
3686 6060 8.406297 TGTAGTTGAGTAGCATATAGAGTGTTG 58.594 37.037 0.00 0.00 0.00 3.33
3687 6061 8.521170 TGTAGTTGAGTAGCATATAGAGTGTT 57.479 34.615 0.00 0.00 0.00 3.32
3688 6062 8.572185 CATGTAGTTGAGTAGCATATAGAGTGT 58.428 37.037 0.00 0.00 0.00 3.55
3689 6063 7.540400 GCATGTAGTTGAGTAGCATATAGAGTG 59.460 40.741 0.00 0.00 0.00 3.51
3690 6064 7.450014 AGCATGTAGTTGAGTAGCATATAGAGT 59.550 37.037 0.00 0.00 0.00 3.24
3691 6065 7.825681 AGCATGTAGTTGAGTAGCATATAGAG 58.174 38.462 0.00 0.00 0.00 2.43
3692 6066 7.094162 GGAGCATGTAGTTGAGTAGCATATAGA 60.094 40.741 0.00 0.00 0.00 1.98
3693 6067 7.032580 GGAGCATGTAGTTGAGTAGCATATAG 58.967 42.308 0.00 0.00 0.00 1.31
3694 6068 6.493458 TGGAGCATGTAGTTGAGTAGCATATA 59.507 38.462 0.00 0.00 0.00 0.86
3695 6069 5.305386 TGGAGCATGTAGTTGAGTAGCATAT 59.695 40.000 0.00 0.00 0.00 1.78
3696 6070 4.649218 TGGAGCATGTAGTTGAGTAGCATA 59.351 41.667 0.00 0.00 0.00 3.14
3697 6071 3.452264 TGGAGCATGTAGTTGAGTAGCAT 59.548 43.478 0.00 0.00 0.00 3.79
3698 6072 2.831526 TGGAGCATGTAGTTGAGTAGCA 59.168 45.455 0.00 0.00 0.00 3.49
3699 6073 3.118956 AGTGGAGCATGTAGTTGAGTAGC 60.119 47.826 0.00 0.00 0.00 3.58
3700 6074 4.440802 GGAGTGGAGCATGTAGTTGAGTAG 60.441 50.000 0.00 0.00 0.00 2.57
3701 6075 3.447586 GGAGTGGAGCATGTAGTTGAGTA 59.552 47.826 0.00 0.00 0.00 2.59
3702 6076 2.234908 GGAGTGGAGCATGTAGTTGAGT 59.765 50.000 0.00 0.00 0.00 3.41
3703 6077 2.234661 TGGAGTGGAGCATGTAGTTGAG 59.765 50.000 0.00 0.00 0.00 3.02
3704 6078 2.234661 CTGGAGTGGAGCATGTAGTTGA 59.765 50.000 0.00 0.00 0.00 3.18
3705 6079 2.027745 ACTGGAGTGGAGCATGTAGTTG 60.028 50.000 0.00 0.00 0.00 3.16
3706 6080 2.234908 GACTGGAGTGGAGCATGTAGTT 59.765 50.000 0.00 0.00 0.00 2.24
3707 6081 1.827969 GACTGGAGTGGAGCATGTAGT 59.172 52.381 0.00 0.00 0.00 2.73
3708 6082 1.202348 CGACTGGAGTGGAGCATGTAG 60.202 57.143 0.00 0.00 0.00 2.74
3709 6083 0.817654 CGACTGGAGTGGAGCATGTA 59.182 55.000 0.00 0.00 0.00 2.29
3710 6084 1.593787 CGACTGGAGTGGAGCATGT 59.406 57.895 0.00 0.00 0.00 3.21
3711 6085 1.812922 GCGACTGGAGTGGAGCATG 60.813 63.158 0.00 0.00 0.00 4.06
3712 6086 1.954362 GAGCGACTGGAGTGGAGCAT 61.954 60.000 0.00 0.00 0.00 3.79
3713 6087 2.601666 AGCGACTGGAGTGGAGCA 60.602 61.111 0.00 0.00 0.00 4.26
3714 6088 2.183046 GAGCGACTGGAGTGGAGC 59.817 66.667 0.00 0.00 0.00 4.70
3715 6089 2.888863 GGAGCGACTGGAGTGGAG 59.111 66.667 0.00 0.00 0.00 3.86
3716 6090 3.062466 CGGAGCGACTGGAGTGGA 61.062 66.667 0.00 0.00 0.00 4.02
3723 6097 3.883744 AAACAGGCCGGAGCGACTG 62.884 63.158 10.86 7.33 41.24 3.51
3724 6098 3.591254 GAAACAGGCCGGAGCGACT 62.591 63.158 10.86 0.00 41.24 4.18
3725 6099 3.119096 GAAACAGGCCGGAGCGAC 61.119 66.667 10.86 0.00 41.24 5.19
3726 6100 4.388499 GGAAACAGGCCGGAGCGA 62.388 66.667 10.86 0.00 41.24 4.93
3727 6101 4.697756 TGGAAACAGGCCGGAGCG 62.698 66.667 10.86 0.00 35.61 5.03
3737 6111 2.781174 AGGAACTGGTTACCTGGAAACA 59.219 45.455 12.76 0.00 37.18 2.83
3738 6112 3.503800 AGGAACTGGTTACCTGGAAAC 57.496 47.619 12.76 0.00 37.18 2.78
3752 6126 1.283321 GGAGGCCATCTTTCAGGAACT 59.717 52.381 5.01 0.00 43.88 3.01
3753 6127 1.756430 GGAGGCCATCTTTCAGGAAC 58.244 55.000 5.01 0.00 0.00 3.62
3754 6128 0.253044 CGGAGGCCATCTTTCAGGAA 59.747 55.000 5.01 0.00 0.00 3.36
3755 6129 0.909610 ACGGAGGCCATCTTTCAGGA 60.910 55.000 5.01 0.00 0.00 3.86
3756 6130 0.462759 GACGGAGGCCATCTTTCAGG 60.463 60.000 5.01 0.00 0.00 3.86
3757 6131 0.250234 TGACGGAGGCCATCTTTCAG 59.750 55.000 5.01 0.00 0.00 3.02
3758 6132 0.036388 GTGACGGAGGCCATCTTTCA 60.036 55.000 5.01 4.15 0.00 2.69
3759 6133 1.084370 CGTGACGGAGGCCATCTTTC 61.084 60.000 5.01 0.00 0.00 2.62
3760 6134 1.079127 CGTGACGGAGGCCATCTTT 60.079 57.895 5.01 0.00 0.00 2.52
3761 6135 2.579201 CGTGACGGAGGCCATCTT 59.421 61.111 5.01 0.00 0.00 2.40
3762 6136 4.148825 GCGTGACGGAGGCCATCT 62.149 66.667 5.01 0.00 0.00 2.90
3768 6142 4.351938 TGTTCGGCGTGACGGAGG 62.352 66.667 7.25 0.00 0.00 4.30
3769 6143 3.103911 GTGTTCGGCGTGACGGAG 61.104 66.667 7.25 0.00 0.00 4.63
3770 6144 4.986587 CGTGTTCGGCGTGACGGA 62.987 66.667 7.25 0.00 0.00 4.69
3772 6146 3.749373 GACGTGTTCGGCGTGACG 61.749 66.667 20.34 20.34 43.04 4.35
3794 6168 1.019805 GTCTTTGGTAGGAGCGGCAC 61.020 60.000 1.45 0.00 0.00 5.01
3795 6169 1.192146 AGTCTTTGGTAGGAGCGGCA 61.192 55.000 1.45 0.00 0.00 5.69
3796 6170 0.460459 GAGTCTTTGGTAGGAGCGGC 60.460 60.000 0.00 0.00 0.00 6.53
3797 6171 1.135333 GAGAGTCTTTGGTAGGAGCGG 59.865 57.143 0.00 0.00 0.00 5.52
3798 6172 1.202200 CGAGAGTCTTTGGTAGGAGCG 60.202 57.143 0.00 0.00 0.00 5.03
3799 6173 1.470112 GCGAGAGTCTTTGGTAGGAGC 60.470 57.143 0.00 0.00 0.00 4.70
3800 6174 1.819288 TGCGAGAGTCTTTGGTAGGAG 59.181 52.381 0.00 0.00 0.00 3.69
3801 6175 1.919240 TGCGAGAGTCTTTGGTAGGA 58.081 50.000 0.00 0.00 0.00 2.94
3802 6176 2.969628 ATGCGAGAGTCTTTGGTAGG 57.030 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.