Multiple sequence alignment - TraesCS6D01G276400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G276400 chr6D 100.000 6227 0 0 1 6227 385227506 385233732 0.000000e+00 11500.0
1 TraesCS6D01G276400 chr6D 82.811 861 120 18 2 843 407461951 407461100 0.000000e+00 745.0
2 TraesCS6D01G276400 chr6A 95.309 1940 52 11 995 2898 529564757 529566693 0.000000e+00 3042.0
3 TraesCS6D01G276400 chr6A 96.201 895 33 1 4397 5291 529567208 529568101 0.000000e+00 1463.0
4 TraesCS6D01G276400 chr6A 94.709 567 15 2 3831 4397 529566690 529567241 0.000000e+00 867.0
5 TraesCS6D01G276400 chr6A 86.453 561 39 19 5681 6227 529600679 529601216 1.160000e-161 580.0
6 TraesCS6D01G276400 chr6A 87.347 490 38 3 1 466 529385945 529386434 1.970000e-149 540.0
7 TraesCS6D01G276400 chr6A 90.212 378 27 10 1 377 529523169 529523537 9.390000e-133 484.0
8 TraesCS6D01G276400 chr6A 83.019 212 13 13 5301 5509 529600311 529600502 2.980000e-38 171.0
9 TraesCS6D01G276400 chr6A 100.000 33 0 0 923 955 529564723 529564755 1.870000e-05 62.1
10 TraesCS6D01G276400 chr6B 94.516 1167 45 9 902 2049 575326600 575327766 0.000000e+00 1783.0
11 TraesCS6D01G276400 chr6B 92.895 1140 71 7 4397 5532 575329209 575330342 0.000000e+00 1648.0
12 TraesCS6D01G276400 chr6B 96.167 861 18 2 2052 2898 575327852 575328711 0.000000e+00 1393.0
13 TraesCS6D01G276400 chr6B 92.063 567 13 8 3831 4397 575328708 575329242 0.000000e+00 769.0
14 TraesCS6D01G276400 chr6B 87.741 571 34 19 5681 6223 575330541 575331103 8.810000e-178 634.0
15 TraesCS6D01G276400 chr2D 98.178 933 13 4 2898 3829 639663494 639662565 0.000000e+00 1626.0
16 TraesCS6D01G276400 chr2D 97.204 930 26 0 2900 3829 627349343 627348414 0.000000e+00 1574.0
17 TraesCS6D01G276400 chr2D 96.785 933 25 4 2900 3829 430504185 430505115 0.000000e+00 1552.0
18 TraesCS6D01G276400 chr2D 82.812 896 112 27 2 888 14567024 14567886 0.000000e+00 763.0
19 TraesCS6D01G276400 chr2D 82.346 912 118 23 2 898 633705971 633706854 0.000000e+00 752.0
20 TraesCS6D01G276400 chr2D 86.057 667 75 9 233 888 560993713 560994372 0.000000e+00 701.0
21 TraesCS6D01G276400 chr1A 97.012 937 21 3 2900 3829 576361803 576360867 0.000000e+00 1568.0
22 TraesCS6D01G276400 chr1A 81.892 867 130 18 2 858 420378816 420379665 0.000000e+00 706.0
23 TraesCS6D01G276400 chr1A 89.691 97 8 2 3873 3969 365069957 365069863 8.480000e-24 122.0
24 TraesCS6D01G276400 chr1A 89.362 94 5 3 3873 3966 107470829 107470917 5.100000e-21 113.0
25 TraesCS6D01G276400 chr7A 96.992 931 26 2 2900 3829 705550239 705551168 0.000000e+00 1563.0
26 TraesCS6D01G276400 chr7A 89.219 269 24 4 2 266 439343369 439343636 1.290000e-86 331.0
27 TraesCS6D01G276400 chr5B 96.684 935 26 4 2899 3829 518330082 518331015 0.000000e+00 1550.0
28 TraesCS6D01G276400 chr5B 85.466 633 76 9 268 888 494299454 494298826 0.000000e+00 645.0
29 TraesCS6D01G276400 chr5B 85.586 444 56 6 2 439 697234784 697234343 5.690000e-125 459.0
30 TraesCS6D01G276400 chr5B 90.217 92 5 4 3877 3966 545802886 545802975 3.940000e-22 117.0
31 TraesCS6D01G276400 chr7B 96.588 938 21 5 2900 3829 117987721 117988655 0.000000e+00 1544.0
32 TraesCS6D01G276400 chr7B 87.719 114 12 2 3858 3970 450642323 450642211 1.410000e-26 132.0
33 TraesCS6D01G276400 chr7B 90.526 95 9 0 3873 3967 709252646 709252552 6.550000e-25 126.0
34 TraesCS6D01G276400 chr4A 96.585 937 23 6 2900 3829 601291082 601290148 0.000000e+00 1544.0
35 TraesCS6D01G276400 chr4A 88.421 95 9 2 3872 3966 24215460 24215368 5.100000e-21 113.0
36 TraesCS6D01G276400 chr4A 86.869 99 13 0 3873 3971 298241950 298241852 1.830000e-20 111.0
37 TraesCS6D01G276400 chr4A 100.000 28 0 0 5618 5645 739641794 739641821 1.100000e-02 52.8
38 TraesCS6D01G276400 chr4A 100.000 28 0 0 5618 5645 742046917 742046944 1.100000e-02 52.8
39 TraesCS6D01G276400 chr3A 96.588 938 21 5 2900 3829 735368653 735367719 0.000000e+00 1544.0
40 TraesCS6D01G276400 chr3A 85.714 329 24 11 2 326 412904206 412903897 6.020000e-85 326.0
41 TraesCS6D01G276400 chr3D 83.835 897 114 18 2 888 199250712 199249837 0.000000e+00 824.0
42 TraesCS6D01G276400 chr4D 84.070 860 125 11 2 858 503552706 503551856 0.000000e+00 819.0
43 TraesCS6D01G276400 chr1D 83.496 921 106 24 2 888 446733916 446734824 0.000000e+00 817.0
44 TraesCS6D01G276400 chr2A 81.773 406 64 10 2 405 242496307 242495910 1.290000e-86 331.0
45 TraesCS6D01G276400 chr5A 85.366 328 28 12 2 326 68810898 68810588 7.790000e-84 322.0
46 TraesCS6D01G276400 chr5A 84.498 329 26 10 2 326 540390467 540390160 1.010000e-77 302.0
47 TraesCS6D01G276400 chr7D 82.031 128 19 4 1225 1352 39952403 39952526 8.540000e-19 106.0
48 TraesCS6D01G276400 chr5D 92.308 39 3 0 4234 4272 90314449 90314487 8.720000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G276400 chr6D 385227506 385233732 6226 False 11500.000 11500 100.00000 1 6227 1 chr6D.!!$F1 6226
1 TraesCS6D01G276400 chr6D 407461100 407461951 851 True 745.000 745 82.81100 2 843 1 chr6D.!!$R1 841
2 TraesCS6D01G276400 chr6A 529564723 529568101 3378 False 1358.525 3042 96.55475 923 5291 4 chr6A.!!$F3 4368
3 TraesCS6D01G276400 chr6A 529600311 529601216 905 False 375.500 580 84.73600 5301 6227 2 chr6A.!!$F4 926
4 TraesCS6D01G276400 chr6B 575326600 575331103 4503 False 1245.400 1783 92.67640 902 6223 5 chr6B.!!$F1 5321
5 TraesCS6D01G276400 chr2D 639662565 639663494 929 True 1626.000 1626 98.17800 2898 3829 1 chr2D.!!$R2 931
6 TraesCS6D01G276400 chr2D 627348414 627349343 929 True 1574.000 1574 97.20400 2900 3829 1 chr2D.!!$R1 929
7 TraesCS6D01G276400 chr2D 430504185 430505115 930 False 1552.000 1552 96.78500 2900 3829 1 chr2D.!!$F2 929
8 TraesCS6D01G276400 chr2D 14567024 14567886 862 False 763.000 763 82.81200 2 888 1 chr2D.!!$F1 886
9 TraesCS6D01G276400 chr2D 633705971 633706854 883 False 752.000 752 82.34600 2 898 1 chr2D.!!$F4 896
10 TraesCS6D01G276400 chr2D 560993713 560994372 659 False 701.000 701 86.05700 233 888 1 chr2D.!!$F3 655
11 TraesCS6D01G276400 chr1A 576360867 576361803 936 True 1568.000 1568 97.01200 2900 3829 1 chr1A.!!$R2 929
12 TraesCS6D01G276400 chr1A 420378816 420379665 849 False 706.000 706 81.89200 2 858 1 chr1A.!!$F2 856
13 TraesCS6D01G276400 chr7A 705550239 705551168 929 False 1563.000 1563 96.99200 2900 3829 1 chr7A.!!$F2 929
14 TraesCS6D01G276400 chr5B 518330082 518331015 933 False 1550.000 1550 96.68400 2899 3829 1 chr5B.!!$F1 930
15 TraesCS6D01G276400 chr5B 494298826 494299454 628 True 645.000 645 85.46600 268 888 1 chr5B.!!$R1 620
16 TraesCS6D01G276400 chr7B 117987721 117988655 934 False 1544.000 1544 96.58800 2900 3829 1 chr7B.!!$F1 929
17 TraesCS6D01G276400 chr4A 601290148 601291082 934 True 1544.000 1544 96.58500 2900 3829 1 chr4A.!!$R3 929
18 TraesCS6D01G276400 chr3A 735367719 735368653 934 True 1544.000 1544 96.58800 2900 3829 1 chr3A.!!$R2 929
19 TraesCS6D01G276400 chr3D 199249837 199250712 875 True 824.000 824 83.83500 2 888 1 chr3D.!!$R1 886
20 TraesCS6D01G276400 chr4D 503551856 503552706 850 True 819.000 819 84.07000 2 858 1 chr4D.!!$R1 856
21 TraesCS6D01G276400 chr1D 446733916 446734824 908 False 817.000 817 83.49600 2 888 1 chr1D.!!$F1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 277 0.323816 TCTCTCTCTCGTGCCCACAT 60.324 55.000 0.00 0.0 0.00 3.21 F
321 350 0.457853 GGAGCGTTACAGCATCGTCA 60.458 55.000 2.64 0.0 40.15 4.35 F
587 641 0.659427 CAGCGGATGATCGTGCAAAT 59.341 50.000 7.25 0.0 0.00 2.32 F
1472 1526 1.063469 GTGGTTGTAATCGGGAATGCG 59.937 52.381 0.00 0.0 0.00 4.73 F
2669 2828 0.383949 GAGATGTCGAGAGCCCTGAC 59.616 60.000 0.00 0.0 0.00 3.51 F
4019 4206 2.030274 GCGGTTGTTAAGCATGTCCTTT 60.030 45.455 0.00 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1335 0.250081 GATCAATGAGGACGGCTCCC 60.250 60.0 0.00 0.0 37.25 4.30 R
1993 2069 1.570813 TTCCATCGTGCAGCTATTCG 58.429 50.0 0.00 0.0 0.00 3.34 R
2146 2305 2.234661 TCCTCTGTCACATGCTTACCAG 59.765 50.0 0.00 0.0 0.00 4.00 R
2896 3069 0.034863 TAAAGCGCCCCTTTTCGGAT 60.035 50.0 2.29 0.0 40.85 4.18 R
4340 4529 0.388778 CACAAGCAAATGCATCGCCA 60.389 50.0 15.41 0.0 45.16 5.69 R
5605 5958 0.320697 AACCAGAACGGAGGCAGTAC 59.679 55.0 0.00 0.0 38.63 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.214216 TGGTTCACCCGAGGTCCTG 61.214 63.158 0.00 0.00 31.02 3.86
84 85 1.073199 CCCGAGGTCCTGTTTTGCT 59.927 57.895 0.00 0.00 0.00 3.91
98 99 1.428448 TTTGCTCGATCGTTCACTGG 58.572 50.000 15.94 0.00 0.00 4.00
134 135 1.302431 TTGACCCATGCCACGTCAG 60.302 57.895 0.00 0.00 37.78 3.51
216 235 2.131776 TTTCCCGGTCTCTCTCTCTC 57.868 55.000 0.00 0.00 0.00 3.20
248 277 0.323816 TCTCTCTCTCGTGCCCACAT 60.324 55.000 0.00 0.00 0.00 3.21
261 290 1.444250 CCACATCATTGCCATGGCC 59.556 57.895 33.44 16.23 41.09 5.36
262 291 1.331399 CCACATCATTGCCATGGCCA 61.331 55.000 33.44 24.27 41.09 5.36
291 320 2.927856 TCCTTGGCAGGGAAGCGA 60.928 61.111 16.95 0.00 41.25 4.93
321 350 0.457853 GGAGCGTTACAGCATCGTCA 60.458 55.000 2.64 0.00 40.15 4.35
405 456 8.578308 TGAGAAACTTAATGAAACAATGCAAG 57.422 30.769 0.00 0.00 0.00 4.01
429 480 6.375455 AGTCAAACTAAATCAATGCCTACAGG 59.625 38.462 0.00 0.00 38.53 4.00
452 503 6.069556 AGGTAGTGATTGTGGTAGAGTAGAGA 60.070 42.308 0.00 0.00 0.00 3.10
465 516 7.149307 GGTAGAGTAGAGAAAATCACATAGCC 58.851 42.308 0.00 0.00 0.00 3.93
551 605 1.745115 CGATGTGGCGTGGGTCAAT 60.745 57.895 0.00 0.00 0.00 2.57
573 627 1.210931 CAACCAAGCATGTCAGCGG 59.789 57.895 0.00 0.00 40.15 5.52
587 641 0.659427 CAGCGGATGATCGTGCAAAT 59.341 50.000 7.25 0.00 0.00 2.32
596 650 4.746535 TGATCGTGCAAATAAGGACCTA 57.253 40.909 0.00 0.00 0.00 3.08
597 651 5.290493 TGATCGTGCAAATAAGGACCTAT 57.710 39.130 0.00 0.00 0.00 2.57
651 705 6.806120 AAACGTGCATTTTGAAAGAAGTAC 57.194 33.333 0.00 0.00 0.00 2.73
661 715 9.931210 CATTTTGAAAGAAGTACGACTAAAGTT 57.069 29.630 0.00 0.00 0.00 2.66
752 806 1.896183 CATGGGTCAACGTGCCACA 60.896 57.895 0.00 0.00 0.00 4.17
766 820 2.046988 CACACGGGCAGATCAGCA 60.047 61.111 12.54 0.00 35.83 4.41
859 913 9.996554 TGAAAGAATTATGACTAAAGTGACAGA 57.003 29.630 0.00 0.00 0.00 3.41
872 926 9.793259 ACTAAAGTGACAGATGAAATTTTAGGA 57.207 29.630 0.00 0.00 33.44 2.94
874 928 7.454260 AAGTGACAGATGAAATTTTAGGACC 57.546 36.000 0.00 0.00 0.00 4.46
875 929 5.643777 AGTGACAGATGAAATTTTAGGACCG 59.356 40.000 0.00 0.00 0.00 4.79
876 930 5.411669 GTGACAGATGAAATTTTAGGACCGT 59.588 40.000 0.00 0.00 0.00 4.83
877 931 5.411361 TGACAGATGAAATTTTAGGACCGTG 59.589 40.000 0.00 0.00 0.00 4.94
878 932 4.156008 ACAGATGAAATTTTAGGACCGTGC 59.844 41.667 0.00 0.00 0.00 5.34
879 933 4.155826 CAGATGAAATTTTAGGACCGTGCA 59.844 41.667 0.00 0.00 0.00 4.57
880 934 4.949856 AGATGAAATTTTAGGACCGTGCAT 59.050 37.500 0.00 0.00 0.00 3.96
881 935 5.418840 AGATGAAATTTTAGGACCGTGCATT 59.581 36.000 0.00 0.00 0.00 3.56
882 936 5.461032 TGAAATTTTAGGACCGTGCATTT 57.539 34.783 0.00 0.00 0.00 2.32
883 937 6.576662 TGAAATTTTAGGACCGTGCATTTA 57.423 33.333 0.00 0.00 0.00 1.40
884 938 6.982852 TGAAATTTTAGGACCGTGCATTTAA 58.017 32.000 0.00 0.00 0.00 1.52
885 939 6.864165 TGAAATTTTAGGACCGTGCATTTAAC 59.136 34.615 0.00 0.00 0.00 2.01
886 940 6.584185 AATTTTAGGACCGTGCATTTAACT 57.416 33.333 0.00 0.00 0.00 2.24
887 941 5.616488 TTTTAGGACCGTGCATTTAACTC 57.384 39.130 0.00 0.00 0.00 3.01
888 942 2.109425 AGGACCGTGCATTTAACTCC 57.891 50.000 0.00 0.00 0.00 3.85
889 943 1.628846 AGGACCGTGCATTTAACTCCT 59.371 47.619 0.00 0.00 0.00 3.69
890 944 1.737793 GGACCGTGCATTTAACTCCTG 59.262 52.381 0.00 0.00 0.00 3.86
891 945 2.614481 GGACCGTGCATTTAACTCCTGA 60.614 50.000 0.00 0.00 0.00 3.86
892 946 3.071479 GACCGTGCATTTAACTCCTGAA 58.929 45.455 0.00 0.00 0.00 3.02
893 947 3.482436 ACCGTGCATTTAACTCCTGAAA 58.518 40.909 0.00 0.00 0.00 2.69
894 948 3.886505 ACCGTGCATTTAACTCCTGAAAA 59.113 39.130 0.00 0.00 0.00 2.29
895 949 4.339814 ACCGTGCATTTAACTCCTGAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
1206 1260 2.112297 GGAGGTTTCGTGCACCCA 59.888 61.111 12.15 0.00 34.44 4.51
1308 1362 2.402564 GTCCTCATTGATCTCCCTGGA 58.597 52.381 0.00 0.00 0.00 3.86
1472 1526 1.063469 GTGGTTGTAATCGGGAATGCG 59.937 52.381 0.00 0.00 0.00 4.73
1477 1531 1.129326 GTAATCGGGAATGCGTCGAG 58.871 55.000 0.00 0.00 36.34 4.04
1499 1553 5.575957 AGCTTAAGATGCATTTCGACAATG 58.424 37.500 6.67 12.92 0.00 2.82
1662 1720 4.710375 TGTCTCCTGTAGGTTGTAGATTCC 59.290 45.833 0.00 0.00 36.34 3.01
1718 1776 2.492019 GTTGGAAACTGCCAGTTGTC 57.508 50.000 11.51 10.41 45.32 3.18
1723 1781 4.211125 TGGAAACTGCCAGTTGTCAAATA 58.789 39.130 11.51 0.00 38.66 1.40
1752 1827 9.553064 AATATGAAACTTATTACTCTCCAGCTG 57.447 33.333 6.78 6.78 0.00 4.24
1764 1839 2.558795 TCTCCAGCTGACAACTGTAGTC 59.441 50.000 17.39 0.00 36.55 2.59
1765 1840 2.297315 CTCCAGCTGACAACTGTAGTCA 59.703 50.000 17.39 0.00 43.23 3.41
1895 1970 3.556004 GCCAGAGCTCTGAATACCATACC 60.556 52.174 39.34 13.49 46.59 2.73
1896 1971 3.305676 CCAGAGCTCTGAATACCATACCG 60.306 52.174 39.34 17.62 46.59 4.02
1993 2069 1.609208 ACTGATGTTGCCTTGTGGTC 58.391 50.000 0.00 0.00 35.27 4.02
2255 2414 1.359848 CATATATCGCGAACCTGCCC 58.640 55.000 15.24 0.00 0.00 5.36
2435 2594 2.206576 AAAGATGCCGCTTCCTTCTT 57.793 45.000 2.74 0.00 0.00 2.52
2669 2828 0.383949 GAGATGTCGAGAGCCCTGAC 59.616 60.000 0.00 0.00 0.00 3.51
2786 2945 9.030301 GTTACTGTGTTCTTTATTTGTGCATTT 57.970 29.630 0.00 0.00 0.00 2.32
3152 3334 2.044758 ACACCTCCGTAAACAGGTCTT 58.955 47.619 0.00 0.00 41.41 3.01
3829 4016 4.385199 CCTTGGCAATAGTATCACCCTTGA 60.385 45.833 0.00 0.00 35.73 3.02
3841 4028 6.940867 AGTATCACCCTTGATCATGAATCATG 59.059 38.462 16.63 16.63 43.87 3.07
3894 4081 6.424883 AGTACTCCCTCCGTCCTATAATATG 58.575 44.000 0.00 0.00 0.00 1.78
4019 4206 2.030274 GCGGTTGTTAAGCATGTCCTTT 60.030 45.455 0.00 0.00 0.00 3.11
4020 4207 3.821841 CGGTTGTTAAGCATGTCCTTTC 58.178 45.455 0.00 0.00 0.00 2.62
4021 4208 3.502211 CGGTTGTTAAGCATGTCCTTTCT 59.498 43.478 0.00 0.00 0.00 2.52
4022 4209 4.378459 CGGTTGTTAAGCATGTCCTTTCTC 60.378 45.833 0.00 0.00 0.00 2.87
4023 4210 4.762251 GGTTGTTAAGCATGTCCTTTCTCT 59.238 41.667 0.00 0.00 0.00 3.10
4024 4211 5.241728 GGTTGTTAAGCATGTCCTTTCTCTT 59.758 40.000 0.00 0.00 0.00 2.85
4025 4212 6.239036 GGTTGTTAAGCATGTCCTTTCTCTTT 60.239 38.462 0.00 0.00 0.00 2.52
4026 4213 7.040686 GGTTGTTAAGCATGTCCTTTCTCTTTA 60.041 37.037 0.00 0.00 0.00 1.85
4027 4214 8.349983 GTTGTTAAGCATGTCCTTTCTCTTTAA 58.650 33.333 0.00 0.00 0.00 1.52
4028 4215 8.099364 TGTTAAGCATGTCCTTTCTCTTTAAG 57.901 34.615 0.00 0.00 0.00 1.85
4029 4216 5.635417 AAGCATGTCCTTTCTCTTTAAGC 57.365 39.130 0.00 0.00 0.00 3.09
4030 4217 4.916183 AGCATGTCCTTTCTCTTTAAGCT 58.084 39.130 0.00 0.00 0.00 3.74
4031 4218 6.054860 AGCATGTCCTTTCTCTTTAAGCTA 57.945 37.500 0.00 0.00 0.00 3.32
4178 4365 3.326747 ACTTCAACGATAGGACTGTTGC 58.673 45.455 0.00 0.00 42.00 4.17
4226 4413 4.961440 TCCCTTGGTTAGTACTACCTCT 57.039 45.455 17.17 0.00 36.60 3.69
4227 4414 4.607239 TCCCTTGGTTAGTACTACCTCTG 58.393 47.826 17.17 10.11 36.60 3.35
4401 4590 8.969260 TTTTGTCTAATGATCTGTATGATGCT 57.031 30.769 0.00 0.00 35.14 3.79
4402 4591 7.958053 TTGTCTAATGATCTGTATGATGCTG 57.042 36.000 0.00 0.00 35.14 4.41
4403 4592 7.059202 TGTCTAATGATCTGTATGATGCTGT 57.941 36.000 0.00 0.00 35.14 4.40
4404 4593 6.927381 TGTCTAATGATCTGTATGATGCTGTG 59.073 38.462 0.00 0.00 35.14 3.66
4405 4594 6.927936 GTCTAATGATCTGTATGATGCTGTGT 59.072 38.462 0.00 0.00 35.14 3.72
4406 4595 6.927381 TCTAATGATCTGTATGATGCTGTGTG 59.073 38.462 0.00 0.00 35.14 3.82
4407 4596 4.476628 TGATCTGTATGATGCTGTGTGT 57.523 40.909 0.00 0.00 35.14 3.72
4408 4597 4.835678 TGATCTGTATGATGCTGTGTGTT 58.164 39.130 0.00 0.00 35.14 3.32
4409 4598 5.247862 TGATCTGTATGATGCTGTGTGTTT 58.752 37.500 0.00 0.00 35.14 2.83
4410 4599 5.706833 TGATCTGTATGATGCTGTGTGTTTT 59.293 36.000 0.00 0.00 35.14 2.43
4411 4600 6.207221 TGATCTGTATGATGCTGTGTGTTTTT 59.793 34.615 0.00 0.00 35.14 1.94
4572 4761 4.991056 CGAATCCATACGATCAAGTGGAAT 59.009 41.667 12.34 5.95 43.41 3.01
4701 4890 0.965866 TCTACACGGAGAGGGTGCTG 60.966 60.000 0.00 0.00 36.91 4.41
4731 4920 1.337118 TTTGCCCACATTCTTCCACC 58.663 50.000 0.00 0.00 0.00 4.61
4850 5039 6.156256 TGCTATGATCCTAACTTGGTTACTGT 59.844 38.462 0.00 0.00 0.00 3.55
4851 5040 7.048512 GCTATGATCCTAACTTGGTTACTGTT 58.951 38.462 0.00 0.00 0.00 3.16
4879 5068 1.753463 AGCTTAGGAGGTCCGGACG 60.753 63.158 27.68 13.35 42.08 4.79
4935 5124 1.841302 TTCTTGCAGCTGACCCGGAT 61.841 55.000 20.43 0.00 0.00 4.18
4957 5146 0.806102 CGTGGGTAAGCACGATCTGG 60.806 60.000 0.00 0.00 46.46 3.86
5119 5308 2.027100 GGAGAACCCCCTCTTACAACTG 60.027 54.545 0.00 0.00 33.79 3.16
5175 5364 2.003196 TGCTCGTCGACATAATGCAA 57.997 45.000 17.16 1.00 0.00 4.08
5197 5386 6.092807 GCAAAATCTTAGTCGGAGAATCAAGT 59.907 38.462 0.00 0.00 39.69 3.16
5202 5391 2.366533 AGTCGGAGAATCAAGTCGCTA 58.633 47.619 0.00 0.00 39.69 4.26
5208 5397 4.576216 GAGAATCAAGTCGCTATCTCCA 57.424 45.455 0.00 0.00 33.17 3.86
5232 5421 6.491745 CAGAGAAATCTACTGCCTAGGATGTA 59.508 42.308 14.75 12.97 0.00 2.29
5262 5451 7.595819 TTTGTGATAACTCCCTTTTGAACAT 57.404 32.000 0.00 0.00 0.00 2.71
5270 5459 6.635030 ACTCCCTTTTGAACATTCAACTAC 57.365 37.500 6.55 0.00 45.99 2.73
5271 5460 6.365520 ACTCCCTTTTGAACATTCAACTACT 58.634 36.000 6.55 0.00 45.99 2.57
5272 5461 7.514721 ACTCCCTTTTGAACATTCAACTACTA 58.485 34.615 6.55 0.00 45.99 1.82
5350 5541 7.505585 TCTTTCACCATTTCCTCTATTTTGTGT 59.494 33.333 0.00 0.00 0.00 3.72
5371 5562 1.610522 GCAGCAACCAGAACTGAATGT 59.389 47.619 3.19 0.00 33.10 2.71
5387 5578 6.644347 ACTGAATGTGTATATATAGCCTGCC 58.356 40.000 0.00 0.00 0.00 4.85
5393 5584 5.363868 TGTGTATATATAGCCTGCCTGATCC 59.636 44.000 0.00 0.00 0.00 3.36
5395 5586 0.539051 ATATAGCCTGCCTGATCCGC 59.461 55.000 0.00 0.00 0.00 5.54
5396 5587 1.877576 TATAGCCTGCCTGATCCGCG 61.878 60.000 0.00 0.00 0.00 6.46
5457 5648 6.884832 TGTGTTAGTATTAGATCAAGGGGTG 58.115 40.000 0.00 0.00 0.00 4.61
5528 5754 8.795786 TGAATGTACAAAGAAATGTAAGTTGC 57.204 30.769 0.00 0.00 37.52 4.17
5541 5767 4.242475 TGTAAGTTGCACTAATCCTGTCG 58.758 43.478 0.00 0.00 0.00 4.35
5542 5768 1.726853 AGTTGCACTAATCCTGTCGC 58.273 50.000 0.00 0.00 0.00 5.19
5546 5772 1.202817 TGCACTAATCCTGTCGCGTTA 59.797 47.619 5.77 0.00 0.00 3.18
5549 5775 2.719556 CACTAATCCTGTCGCGTTATCG 59.280 50.000 5.77 0.00 40.37 2.92
5553 5779 2.917701 TCCTGTCGCGTTATCGTTAA 57.082 45.000 5.77 0.00 39.49 2.01
5555 5781 1.585214 CCTGTCGCGTTATCGTTAACC 59.415 52.381 5.77 3.71 39.49 2.85
5571 5921 5.593909 TCGTTAACCGATTCTCCAGGTAATA 59.406 40.000 0.00 0.00 41.60 0.98
5572 5922 5.919141 CGTTAACCGATTCTCCAGGTAATAG 59.081 44.000 0.00 0.00 37.26 1.73
5580 5930 5.975988 TTCTCCAGGTAATAGGCAATCTT 57.024 39.130 0.00 0.00 0.00 2.40
5581 5931 5.975988 TCTCCAGGTAATAGGCAATCTTT 57.024 39.130 0.00 0.00 0.00 2.52
5591 5944 8.188799 GGTAATAGGCAATCTTTTAACTGAACC 58.811 37.037 0.00 0.00 0.00 3.62
5603 5956 2.254546 ACTGAACCGCATTGTTGAGA 57.745 45.000 4.65 0.00 33.76 3.27
5604 5957 2.146342 ACTGAACCGCATTGTTGAGAG 58.854 47.619 4.65 0.00 33.76 3.20
5605 5958 1.466167 CTGAACCGCATTGTTGAGAGG 59.534 52.381 0.00 0.00 32.02 3.69
5606 5959 1.202758 TGAACCGCATTGTTGAGAGGT 60.203 47.619 0.00 0.00 0.00 3.85
5607 5960 2.037902 TGAACCGCATTGTTGAGAGGTA 59.962 45.455 0.00 0.00 0.00 3.08
5608 5961 2.094762 ACCGCATTGTTGAGAGGTAC 57.905 50.000 0.00 0.00 0.00 3.34
5610 5963 2.002586 CCGCATTGTTGAGAGGTACTG 58.997 52.381 0.00 0.00 41.55 2.74
5611 5964 1.394917 CGCATTGTTGAGAGGTACTGC 59.605 52.381 0.00 0.00 41.55 4.40
5612 5965 1.740025 GCATTGTTGAGAGGTACTGCC 59.260 52.381 0.00 0.00 41.55 4.85
5620 5973 4.867847 AGGTACTGCCTCCGTTCT 57.132 55.556 0.00 0.00 46.96 3.01
5621 5974 2.277858 AGGTACTGCCTCCGTTCTG 58.722 57.895 0.00 0.00 46.96 3.02
5622 5975 1.218316 GGTACTGCCTCCGTTCTGG 59.782 63.158 0.00 0.00 40.09 3.86
5623 5976 1.542187 GGTACTGCCTCCGTTCTGGT 61.542 60.000 0.00 0.00 39.52 4.00
5624 5977 0.320697 GTACTGCCTCCGTTCTGGTT 59.679 55.000 0.00 0.00 39.52 3.67
5625 5978 1.053424 TACTGCCTCCGTTCTGGTTT 58.947 50.000 0.00 0.00 39.52 3.27
5626 5979 1.053424 ACTGCCTCCGTTCTGGTTTA 58.947 50.000 0.00 0.00 39.52 2.01
5627 5980 1.628846 ACTGCCTCCGTTCTGGTTTAT 59.371 47.619 0.00 0.00 39.52 1.40
5628 5981 2.039879 ACTGCCTCCGTTCTGGTTTATT 59.960 45.455 0.00 0.00 39.52 1.40
5629 5982 2.420022 CTGCCTCCGTTCTGGTTTATTG 59.580 50.000 0.00 0.00 39.52 1.90
5630 5983 1.743394 GCCTCCGTTCTGGTTTATTGG 59.257 52.381 0.00 0.00 39.52 3.16
5631 5984 2.878526 GCCTCCGTTCTGGTTTATTGGT 60.879 50.000 0.00 0.00 39.52 3.67
5632 5985 3.007635 CCTCCGTTCTGGTTTATTGGTC 58.992 50.000 0.00 0.00 39.52 4.02
5633 5986 3.307480 CCTCCGTTCTGGTTTATTGGTCT 60.307 47.826 0.00 0.00 39.52 3.85
5634 5987 3.933332 CTCCGTTCTGGTTTATTGGTCTC 59.067 47.826 0.00 0.00 39.52 3.36
5635 5988 3.007635 CCGTTCTGGTTTATTGGTCTCC 58.992 50.000 0.00 0.00 0.00 3.71
5636 5989 3.307480 CCGTTCTGGTTTATTGGTCTCCT 60.307 47.826 0.00 0.00 0.00 3.69
5637 5990 4.324267 CGTTCTGGTTTATTGGTCTCCTT 58.676 43.478 0.00 0.00 0.00 3.36
5638 5991 4.392138 CGTTCTGGTTTATTGGTCTCCTTC 59.608 45.833 0.00 0.00 0.00 3.46
5639 5992 4.202245 TCTGGTTTATTGGTCTCCTTCG 57.798 45.455 0.00 0.00 0.00 3.79
5640 5993 3.581332 TCTGGTTTATTGGTCTCCTTCGT 59.419 43.478 0.00 0.00 0.00 3.85
5641 5994 4.773674 TCTGGTTTATTGGTCTCCTTCGTA 59.226 41.667 0.00 0.00 0.00 3.43
5642 5995 5.424252 TCTGGTTTATTGGTCTCCTTCGTAT 59.576 40.000 0.00 0.00 0.00 3.06
5643 5996 6.057321 TGGTTTATTGGTCTCCTTCGTATT 57.943 37.500 0.00 0.00 0.00 1.89
5644 5997 6.478129 TGGTTTATTGGTCTCCTTCGTATTT 58.522 36.000 0.00 0.00 0.00 1.40
5645 5998 6.373216 TGGTTTATTGGTCTCCTTCGTATTTG 59.627 38.462 0.00 0.00 0.00 2.32
5646 5999 6.183360 GGTTTATTGGTCTCCTTCGTATTTGG 60.183 42.308 0.00 0.00 0.00 3.28
5647 6000 2.396590 TGGTCTCCTTCGTATTTGGC 57.603 50.000 0.00 0.00 0.00 4.52
5648 6001 1.287425 GGTCTCCTTCGTATTTGGCG 58.713 55.000 0.00 0.00 0.00 5.69
5649 6002 1.287425 GTCTCCTTCGTATTTGGCGG 58.713 55.000 0.00 0.00 0.00 6.13
5650 6003 1.134907 GTCTCCTTCGTATTTGGCGGA 60.135 52.381 0.00 0.00 0.00 5.54
5651 6004 1.134907 TCTCCTTCGTATTTGGCGGAC 60.135 52.381 0.00 0.00 0.00 4.79
5652 6005 0.609151 TCCTTCGTATTTGGCGGACA 59.391 50.000 0.00 0.00 0.00 4.02
5653 6006 1.006832 CCTTCGTATTTGGCGGACAG 58.993 55.000 0.00 0.00 0.00 3.51
5654 6007 1.674817 CCTTCGTATTTGGCGGACAGT 60.675 52.381 0.00 0.00 0.00 3.55
5655 6008 2.073816 CTTCGTATTTGGCGGACAGTT 58.926 47.619 0.00 0.00 0.00 3.16
5656 6009 1.717194 TCGTATTTGGCGGACAGTTC 58.283 50.000 0.00 0.00 0.00 3.01
5657 6010 1.274167 TCGTATTTGGCGGACAGTTCT 59.726 47.619 0.00 0.00 0.00 3.01
5658 6011 1.393539 CGTATTTGGCGGACAGTTCTG 59.606 52.381 0.00 0.00 0.00 3.02
5659 6012 2.695359 GTATTTGGCGGACAGTTCTGA 58.305 47.619 6.83 0.00 0.00 3.27
5660 6013 2.496899 ATTTGGCGGACAGTTCTGAT 57.503 45.000 6.83 0.00 0.00 2.90
5661 6014 2.270352 TTTGGCGGACAGTTCTGATT 57.730 45.000 6.83 0.00 0.00 2.57
5662 6015 2.270352 TTGGCGGACAGTTCTGATTT 57.730 45.000 6.83 0.00 0.00 2.17
5663 6016 3.410631 TTGGCGGACAGTTCTGATTTA 57.589 42.857 6.83 0.00 0.00 1.40
5664 6017 3.627395 TGGCGGACAGTTCTGATTTAT 57.373 42.857 6.83 0.00 0.00 1.40
5665 6018 3.950397 TGGCGGACAGTTCTGATTTATT 58.050 40.909 6.83 0.00 0.00 1.40
5666 6019 3.689161 TGGCGGACAGTTCTGATTTATTG 59.311 43.478 6.83 0.00 0.00 1.90
5667 6020 3.065371 GGCGGACAGTTCTGATTTATTGG 59.935 47.826 6.83 0.00 0.00 3.16
5668 6021 3.689649 GCGGACAGTTCTGATTTATTGGT 59.310 43.478 6.83 0.00 0.00 3.67
5669 6022 4.873827 GCGGACAGTTCTGATTTATTGGTA 59.126 41.667 6.83 0.00 0.00 3.25
5670 6023 5.527582 GCGGACAGTTCTGATTTATTGGTAT 59.472 40.000 6.83 0.00 0.00 2.73
5671 6024 6.038271 GCGGACAGTTCTGATTTATTGGTATT 59.962 38.462 6.83 0.00 0.00 1.89
5672 6025 7.409697 CGGACAGTTCTGATTTATTGGTATTG 58.590 38.462 6.83 0.00 0.00 1.90
5673 6026 7.467267 CGGACAGTTCTGATTTATTGGTATTGG 60.467 40.741 6.83 0.00 0.00 3.16
5674 6027 7.100458 ACAGTTCTGATTTATTGGTATTGGC 57.900 36.000 6.83 0.00 0.00 4.52
5675 6028 6.183360 ACAGTTCTGATTTATTGGTATTGGCG 60.183 38.462 6.83 0.00 0.00 5.69
5676 6029 5.299279 AGTTCTGATTTATTGGTATTGGCGG 59.701 40.000 0.00 0.00 0.00 6.13
5677 6030 5.042463 TCTGATTTATTGGTATTGGCGGA 57.958 39.130 0.00 0.00 0.00 5.54
5678 6031 4.819630 TCTGATTTATTGGTATTGGCGGAC 59.180 41.667 0.00 0.00 0.00 4.79
5679 6032 3.562141 TGATTTATTGGTATTGGCGGACG 59.438 43.478 0.00 0.00 0.00 4.79
5703 6056 9.136952 ACGTAGTTCAAATAAGAGTTGACATAC 57.863 33.333 0.00 0.00 37.78 2.39
5704 6057 9.135843 CGTAGTTCAAATAAGAGTTGACATACA 57.864 33.333 9.34 0.00 34.78 2.29
5733 6099 5.121454 CAGGCAAGATAAGAAGAGTTGACAC 59.879 44.000 0.00 0.00 0.00 3.67
5737 6103 6.348050 GCAAGATAAGAAGAGTTGACACCTTG 60.348 42.308 0.00 0.00 0.00 3.61
5754 6143 2.158986 CCTTGAGACCCATAGCACAGAG 60.159 54.545 0.00 0.00 0.00 3.35
5777 6171 4.685628 GCTCTGATCTAAAGCTCTATGCAC 59.314 45.833 0.00 0.00 45.94 4.57
5799 6193 4.516698 ACAATCTCTTTTCACAATCGCAGT 59.483 37.500 0.00 0.00 0.00 4.40
5804 6198 5.931724 TCTCTTTTCACAATCGCAGTCATAA 59.068 36.000 0.00 0.00 0.00 1.90
5805 6199 6.595326 TCTCTTTTCACAATCGCAGTCATAAT 59.405 34.615 0.00 0.00 0.00 1.28
5806 6200 7.763985 TCTCTTTTCACAATCGCAGTCATAATA 59.236 33.333 0.00 0.00 0.00 0.98
5847 6241 0.968405 AACGCAGCACCATCCAAAAT 59.032 45.000 0.00 0.00 0.00 1.82
5849 6243 1.067635 ACGCAGCACCATCCAAAATTC 60.068 47.619 0.00 0.00 0.00 2.17
5850 6244 1.632422 GCAGCACCATCCAAAATTCG 58.368 50.000 0.00 0.00 0.00 3.34
5851 6245 1.067635 GCAGCACCATCCAAAATTCGT 60.068 47.619 0.00 0.00 0.00 3.85
5853 6247 3.652274 CAGCACCATCCAAAATTCGTTT 58.348 40.909 0.00 0.00 0.00 3.60
5900 6294 4.433615 GAAGAGACTGACAACTCACACAA 58.566 43.478 10.55 0.00 35.83 3.33
5902 6296 5.028549 AGAGACTGACAACTCACACAAAT 57.971 39.130 10.55 0.00 35.83 2.32
5955 6353 0.808847 GATGGGAACGACGCCCTAAC 60.809 60.000 11.28 0.00 46.19 2.34
5986 6384 1.132462 AGATGATCCTCTGCCCCATCT 60.132 52.381 0.00 0.00 39.10 2.90
6014 6412 4.144297 TGGACAGGATCACCAAAGAAAAG 58.856 43.478 0.00 0.00 38.94 2.27
6038 6450 8.051901 AGGAAAAAGAAAATCCTAATACACGG 57.948 34.615 0.00 0.00 41.74 4.94
6044 6456 4.602340 AAATCCTAATACACGGCGAGAT 57.398 40.909 16.62 0.00 0.00 2.75
6045 6457 4.602340 AATCCTAATACACGGCGAGATT 57.398 40.909 16.62 12.09 0.00 2.40
6048 6460 2.469826 CTAATACACGGCGAGATTGCA 58.530 47.619 16.62 0.00 36.28 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.411547 CCAGTGAACGATCGAGCAAAAC 60.412 50.000 24.34 10.56 0.00 2.43
84 85 1.215382 CAGGCCAGTGAACGATCGA 59.785 57.895 24.34 0.00 0.00 3.59
98 99 4.374702 CACGTCACGCAAGCAGGC 62.375 66.667 0.00 0.00 45.62 4.85
164 167 1.611977 GGTTACAAGGGGCTTTGTGTC 59.388 52.381 15.02 9.24 41.18 3.67
168 172 0.902984 GGGGGTTACAAGGGGCTTTG 60.903 60.000 1.65 1.65 0.00 2.77
216 235 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
248 277 2.042741 CCCTGGCCATGGCAATGA 60.043 61.111 36.56 16.77 44.11 2.57
261 290 2.035312 AAGGAGCTTGCTGCCCTG 59.965 61.111 10.41 0.00 44.23 4.45
262 291 2.035312 CAAGGAGCTTGCTGCCCT 59.965 61.111 10.41 3.94 44.23 5.19
291 320 1.199558 GTAACGCTCCTCTTCGTCACT 59.800 52.381 0.00 0.00 38.03 3.41
330 359 0.413832 TAGGAGCTTGTGGAGGAGGT 59.586 55.000 0.00 0.00 0.00 3.85
405 456 6.151144 ACCTGTAGGCATTGATTTAGTTTGAC 59.849 38.462 0.00 0.00 39.32 3.18
429 480 7.627298 TTCTCTACTCTACCACAATCACTAC 57.373 40.000 0.00 0.00 0.00 2.73
452 503 3.884895 TCGTCCATGGCTATGTGATTTT 58.115 40.909 6.96 0.00 32.21 1.82
465 516 1.013596 TTTTGCCGCTATCGTCCATG 58.986 50.000 0.00 0.00 0.00 3.66
551 605 2.132517 CTGACATGCTTGGTTGCGCA 62.133 55.000 5.66 5.66 40.87 6.09
565 619 1.519234 GCACGATCATCCGCTGACA 60.519 57.895 0.00 0.00 36.48 3.58
573 627 4.130118 AGGTCCTTATTTGCACGATCATC 58.870 43.478 0.00 0.00 0.00 2.92
587 641 5.789574 AATTGGTTCACCATAGGTCCTTA 57.210 39.130 0.00 0.00 46.97 2.69
651 705 5.258456 TCTGGGCAGTATAACTTTAGTCG 57.742 43.478 0.00 0.00 0.00 4.18
661 715 6.412214 GTCCTAAAAGTTTCTGGGCAGTATA 58.588 40.000 6.58 0.00 0.00 1.47
663 717 4.506095 GGTCCTAAAAGTTTCTGGGCAGTA 60.506 45.833 11.79 0.00 0.00 2.74
713 767 2.046892 CGTTGACAGAGGGCCCAG 60.047 66.667 27.56 16.27 0.00 4.45
727 781 2.258013 CGTTGACCCATGCCACGTT 61.258 57.895 0.00 0.00 0.00 3.99
752 806 2.437359 GCTTGCTGATCTGCCCGT 60.437 61.111 20.39 0.00 0.00 5.28
784 838 8.370182 TCTTTAGTAAGTGGTTTATTCGAGGTT 58.630 33.333 0.00 0.00 32.98 3.50
833 887 9.996554 TCTGTCACTTTAGTCATAATTCTTTCA 57.003 29.630 0.00 0.00 0.00 2.69
846 900 9.793259 TCCTAAAATTTCATCTGTCACTTTAGT 57.207 29.630 0.00 0.00 0.00 2.24
848 902 9.010029 GGTCCTAAAATTTCATCTGTCACTTTA 57.990 33.333 0.00 0.00 0.00 1.85
849 903 7.308589 CGGTCCTAAAATTTCATCTGTCACTTT 60.309 37.037 0.00 0.00 0.00 2.66
850 904 6.149474 CGGTCCTAAAATTTCATCTGTCACTT 59.851 38.462 0.00 0.00 0.00 3.16
851 905 5.643777 CGGTCCTAAAATTTCATCTGTCACT 59.356 40.000 0.00 0.00 0.00 3.41
852 906 5.411669 ACGGTCCTAAAATTTCATCTGTCAC 59.588 40.000 0.00 0.00 0.00 3.67
853 907 5.411361 CACGGTCCTAAAATTTCATCTGTCA 59.589 40.000 0.00 0.00 0.00 3.58
854 908 5.673818 GCACGGTCCTAAAATTTCATCTGTC 60.674 44.000 0.00 0.00 0.00 3.51
855 909 4.156008 GCACGGTCCTAAAATTTCATCTGT 59.844 41.667 0.00 0.00 0.00 3.41
856 910 4.155826 TGCACGGTCCTAAAATTTCATCTG 59.844 41.667 0.00 0.00 0.00 2.90
857 911 4.331968 TGCACGGTCCTAAAATTTCATCT 58.668 39.130 0.00 0.00 0.00 2.90
858 912 4.695217 TGCACGGTCCTAAAATTTCATC 57.305 40.909 0.00 0.00 0.00 2.92
859 913 5.659440 AATGCACGGTCCTAAAATTTCAT 57.341 34.783 0.00 0.00 0.00 2.57
860 914 5.461032 AAATGCACGGTCCTAAAATTTCA 57.539 34.783 0.00 0.00 0.00 2.69
861 915 7.088272 AGTTAAATGCACGGTCCTAAAATTTC 58.912 34.615 0.00 0.00 0.00 2.17
862 916 6.988522 AGTTAAATGCACGGTCCTAAAATTT 58.011 32.000 0.00 0.00 0.00 1.82
863 917 6.349860 GGAGTTAAATGCACGGTCCTAAAATT 60.350 38.462 0.00 0.00 0.00 1.82
864 918 5.124936 GGAGTTAAATGCACGGTCCTAAAAT 59.875 40.000 0.00 0.00 0.00 1.82
865 919 4.456566 GGAGTTAAATGCACGGTCCTAAAA 59.543 41.667 0.00 0.00 0.00 1.52
866 920 4.004982 GGAGTTAAATGCACGGTCCTAAA 58.995 43.478 0.00 0.00 0.00 1.85
867 921 3.262405 AGGAGTTAAATGCACGGTCCTAA 59.738 43.478 0.00 0.00 30.99 2.69
868 922 2.835764 AGGAGTTAAATGCACGGTCCTA 59.164 45.455 0.00 0.00 30.99 2.94
869 923 1.628846 AGGAGTTAAATGCACGGTCCT 59.371 47.619 0.00 0.00 0.00 3.85
870 924 1.737793 CAGGAGTTAAATGCACGGTCC 59.262 52.381 0.00 0.00 0.00 4.46
871 925 2.695359 TCAGGAGTTAAATGCACGGTC 58.305 47.619 0.00 0.00 0.00 4.79
872 926 2.851263 TCAGGAGTTAAATGCACGGT 57.149 45.000 0.00 0.00 0.00 4.83
873 927 4.497473 TTTTCAGGAGTTAAATGCACGG 57.503 40.909 0.00 0.00 0.00 4.94
892 946 3.433306 TCTCCCACGGACATCATTTTT 57.567 42.857 0.00 0.00 0.00 1.94
893 947 3.282021 CATCTCCCACGGACATCATTTT 58.718 45.455 0.00 0.00 0.00 1.82
894 948 2.923121 CATCTCCCACGGACATCATTT 58.077 47.619 0.00 0.00 0.00 2.32
895 949 1.475751 GCATCTCCCACGGACATCATT 60.476 52.381 0.00 0.00 0.00 2.57
896 950 0.107456 GCATCTCCCACGGACATCAT 59.893 55.000 0.00 0.00 0.00 2.45
897 951 1.522092 GCATCTCCCACGGACATCA 59.478 57.895 0.00 0.00 0.00 3.07
898 952 1.227674 GGCATCTCCCACGGACATC 60.228 63.158 0.00 0.00 0.00 3.06
899 953 2.911143 GGCATCTCCCACGGACAT 59.089 61.111 0.00 0.00 0.00 3.06
921 975 1.416401 TGAGGAAGACGGCTGAAAAGT 59.584 47.619 0.00 0.00 0.00 2.66
1281 1335 0.250081 GATCAATGAGGACGGCTCCC 60.250 60.000 0.00 0.00 37.25 4.30
1472 1526 3.551890 TCGAAATGCATCTTAAGCTCGAC 59.448 43.478 0.00 0.00 33.30 4.20
1477 1531 5.861491 CATTGTCGAAATGCATCTTAAGC 57.139 39.130 0.00 0.00 0.00 3.09
1499 1553 1.767759 ACCAGTTATGCTCCCAATGC 58.232 50.000 0.00 0.00 0.00 3.56
1504 1558 3.066760 GCATTGTTACCAGTTATGCTCCC 59.933 47.826 0.00 0.00 38.75 4.30
1662 1720 5.008415 CAGTTCAGAGCATAATTTAGCCCAG 59.992 44.000 0.00 0.00 0.00 4.45
1742 1817 2.560542 ACTACAGTTGTCAGCTGGAGAG 59.439 50.000 29.74 19.78 45.40 3.20
1764 1839 5.777802 TCTTCTCAGTCTCAGCTTAAACTG 58.222 41.667 11.25 11.25 40.34 3.16
1765 1840 5.538433 ACTCTTCTCAGTCTCAGCTTAAACT 59.462 40.000 0.00 0.00 0.00 2.66
1768 1843 5.536538 TGAACTCTTCTCAGTCTCAGCTTAA 59.463 40.000 0.00 0.00 0.00 1.85
1895 1970 7.116233 AGCTTAAACAATTTAACATGGAAAGCG 59.884 33.333 0.00 0.00 32.15 4.68
1896 1971 8.310406 AGCTTAAACAATTTAACATGGAAAGC 57.690 30.769 0.00 0.00 32.15 3.51
1972 2048 2.362077 GACCACAAGGCAACATCAGTTT 59.638 45.455 0.00 0.00 39.06 2.66
1993 2069 1.570813 TTCCATCGTGCAGCTATTCG 58.429 50.000 0.00 0.00 0.00 3.34
2050 2209 9.937175 GAAAATACTGAATAAAAATCTCCCTCG 57.063 33.333 0.00 0.00 0.00 4.63
2146 2305 2.234661 TCCTCTGTCACATGCTTACCAG 59.765 50.000 0.00 0.00 0.00 4.00
2255 2414 4.741342 AGATTGGTACGGTAAAAGTCTCG 58.259 43.478 0.00 0.00 0.00 4.04
2435 2594 7.335627 TCTGTTTTACCTCTTTCTCAAACTCA 58.664 34.615 0.00 0.00 0.00 3.41
2669 2828 6.560253 AAAGTACTTGCCTTAACTGACATG 57.440 37.500 9.34 0.00 0.00 3.21
2765 2924 6.047870 AGCAAATGCACAAATAAAGAACACA 58.952 32.000 8.28 0.00 45.16 3.72
2892 3065 1.591504 GCGCCCCTTTTCGGATGAAA 61.592 55.000 0.00 0.00 42.21 2.69
2894 3067 2.437716 GCGCCCCTTTTCGGATGA 60.438 61.111 0.00 0.00 33.16 2.92
2895 3068 1.595093 AAAGCGCCCCTTTTCGGATG 61.595 55.000 2.29 0.00 40.85 3.51
2896 3069 0.034863 TAAAGCGCCCCTTTTCGGAT 60.035 50.000 2.29 0.00 40.85 4.18
2897 3070 0.034863 ATAAAGCGCCCCTTTTCGGA 60.035 50.000 2.29 0.00 40.85 4.55
3038 3220 0.529119 CCGACGGTTTAGGCGCTATT 60.529 55.000 7.64 0.00 42.21 1.73
3841 4028 9.703892 AGAAGATATTATTAGCACATGACTGTC 57.296 33.333 0.00 0.00 31.62 3.51
3956 4143 4.755266 TGTAAAGAATGCTACTCCCTCC 57.245 45.455 0.00 0.00 0.00 4.30
3957 4144 6.702282 GTGTATGTAAAGAATGCTACTCCCTC 59.298 42.308 0.00 0.00 0.00 4.30
4178 4365 5.559148 ATTATCTCTAGGAACAGGGCAAG 57.441 43.478 0.00 0.00 0.00 4.01
4335 4524 1.204228 GCAAATGCATCGCCACATCG 61.204 55.000 0.00 0.00 41.59 3.84
4340 4529 0.388778 CACAAGCAAATGCATCGCCA 60.389 50.000 15.41 0.00 45.16 5.69
4388 4577 6.579666 AAAAACACACAGCATCATACAGAT 57.420 33.333 0.00 0.00 37.48 2.90
4409 4598 8.236586 GCACAACATACAGATCATTAGACAAAA 58.763 33.333 0.00 0.00 0.00 2.44
4410 4599 7.607607 AGCACAACATACAGATCATTAGACAAA 59.392 33.333 0.00 0.00 0.00 2.83
4411 4600 7.105588 AGCACAACATACAGATCATTAGACAA 58.894 34.615 0.00 0.00 0.00 3.18
4412 4601 6.643388 AGCACAACATACAGATCATTAGACA 58.357 36.000 0.00 0.00 0.00 3.41
4413 4602 8.824159 ATAGCACAACATACAGATCATTAGAC 57.176 34.615 0.00 0.00 0.00 2.59
4416 4605 9.191995 CGTTATAGCACAACATACAGATCATTA 57.808 33.333 0.00 0.00 0.00 1.90
4417 4606 7.307396 GCGTTATAGCACAACATACAGATCATT 60.307 37.037 0.00 0.00 37.05 2.57
4418 4607 6.146184 GCGTTATAGCACAACATACAGATCAT 59.854 38.462 0.00 0.00 37.05 2.45
4419 4608 5.462068 GCGTTATAGCACAACATACAGATCA 59.538 40.000 0.00 0.00 37.05 2.92
4420 4609 5.462068 TGCGTTATAGCACAACATACAGATC 59.538 40.000 0.00 0.00 42.92 2.75
4421 4610 5.356426 TGCGTTATAGCACAACATACAGAT 58.644 37.500 0.00 0.00 42.92 2.90
4572 4761 6.265422 TCGAGAAGATTACCATCATAGCTCAA 59.735 38.462 0.00 0.00 0.00 3.02
4664 4853 6.972901 CGTGTAGATTTAGCTGTGACAAGATA 59.027 38.462 0.00 0.00 0.00 1.98
4701 4890 1.754226 TGTGGGCAAAACCTTCAGAAC 59.246 47.619 0.00 0.00 39.10 3.01
4837 5026 5.712917 TGACCTGAAAAACAGTAACCAAGTT 59.287 36.000 0.00 0.00 44.40 2.66
4850 5039 3.394606 ACCTCCTAAGCTGACCTGAAAAA 59.605 43.478 0.00 0.00 0.00 1.94
4851 5040 2.979678 ACCTCCTAAGCTGACCTGAAAA 59.020 45.455 0.00 0.00 0.00 2.29
4879 5068 4.174762 GCTAATAAGCGCCCATCTACTAC 58.825 47.826 2.29 0.00 39.39 2.73
4908 5097 1.341209 TCAGCTGCAAGAAGAACTCGA 59.659 47.619 9.47 0.00 34.07 4.04
4957 5146 2.287547 TGCCAAGCGACATCAAAGTTTC 60.288 45.455 0.00 0.00 0.00 2.78
5055 5244 3.129287 CCATTATCTTGGTGTGGAAGTGC 59.871 47.826 0.00 0.00 31.59 4.40
5115 5304 3.236391 TGGACGGCCAGTTCAGTT 58.764 55.556 5.41 0.00 39.92 3.16
5175 5364 6.037098 CGACTTGATTCTCCGACTAAGATTT 58.963 40.000 0.00 0.00 0.00 2.17
5197 5386 5.471797 CAGTAGATTTCTCTGGAGATAGCGA 59.528 44.000 0.88 0.00 37.29 4.93
5202 5391 4.555689 AGGCAGTAGATTTCTCTGGAGAT 58.444 43.478 0.88 0.00 37.29 2.75
5208 5397 5.463154 ACATCCTAGGCAGTAGATTTCTCT 58.537 41.667 2.96 0.00 35.39 3.10
5232 5421 8.482128 TCAAAAGGGAGTTATCACAAAATGTTT 58.518 29.630 0.00 0.00 0.00 2.83
5303 5492 9.154847 GAAAGATCAAAACTGGGGATTTATTTG 57.845 33.333 0.00 0.00 0.00 2.32
5350 5541 1.610038 CATTCAGTTCTGGTTGCTGCA 59.390 47.619 0.00 0.00 0.00 4.41
5371 5562 4.584743 CGGATCAGGCAGGCTATATATACA 59.415 45.833 0.00 0.00 0.00 2.29
5387 5578 0.387878 GCCTCTCATACGCGGATCAG 60.388 60.000 12.47 2.23 0.00 2.90
5395 5586 3.247442 TGTGTAAAACGCCTCTCATACG 58.753 45.455 0.00 0.00 0.00 3.06
5396 5587 4.630069 ACATGTGTAAAACGCCTCTCATAC 59.370 41.667 0.00 0.00 0.00 2.39
5498 5692 6.932901 ACATTTCTTTGTACATTCATTGCG 57.067 33.333 0.00 0.00 0.00 4.85
5528 5754 2.719556 CGATAACGCGACAGGATTAGTG 59.280 50.000 15.93 0.00 0.00 2.74
5549 5775 6.221659 CCTATTACCTGGAGAATCGGTTAAC 58.778 44.000 0.00 0.00 34.37 2.01
5553 5779 2.633481 GCCTATTACCTGGAGAATCGGT 59.367 50.000 0.00 0.00 34.37 4.69
5555 5781 4.336889 TTGCCTATTACCTGGAGAATCG 57.663 45.455 0.00 0.00 34.37 3.34
5562 5909 7.556275 TCAGTTAAAAGATTGCCTATTACCTGG 59.444 37.037 0.00 0.00 0.00 4.45
5564 5914 8.957466 GTTCAGTTAAAAGATTGCCTATTACCT 58.043 33.333 0.00 0.00 0.00 3.08
5571 5921 3.057526 GCGGTTCAGTTAAAAGATTGCCT 60.058 43.478 0.00 0.00 0.00 4.75
5572 5922 3.242518 GCGGTTCAGTTAAAAGATTGCC 58.757 45.455 0.00 0.00 0.00 4.52
5580 5930 4.576873 TCTCAACAATGCGGTTCAGTTAAA 59.423 37.500 0.00 0.00 0.00 1.52
5581 5931 4.130857 TCTCAACAATGCGGTTCAGTTAA 58.869 39.130 0.00 0.00 0.00 2.01
5591 5944 1.394917 GCAGTACCTCTCAACAATGCG 59.605 52.381 0.00 0.00 0.00 4.73
5604 5957 1.218316 CCAGAACGGAGGCAGTACC 59.782 63.158 0.00 0.00 36.56 3.34
5605 5958 0.320697 AACCAGAACGGAGGCAGTAC 59.679 55.000 0.00 0.00 38.63 2.73
5606 5959 1.053424 AAACCAGAACGGAGGCAGTA 58.947 50.000 0.00 0.00 38.63 2.74
5607 5960 1.053424 TAAACCAGAACGGAGGCAGT 58.947 50.000 0.00 0.00 38.63 4.40
5608 5961 2.403252 ATAAACCAGAACGGAGGCAG 57.597 50.000 0.00 0.00 38.63 4.85
5609 5962 2.432444 CAATAAACCAGAACGGAGGCA 58.568 47.619 0.00 0.00 38.63 4.75
5610 5963 1.743394 CCAATAAACCAGAACGGAGGC 59.257 52.381 0.00 0.00 38.63 4.70
5611 5964 3.007635 GACCAATAAACCAGAACGGAGG 58.992 50.000 0.00 0.00 38.63 4.30
5612 5965 3.933332 GAGACCAATAAACCAGAACGGAG 59.067 47.826 0.00 0.00 38.63 4.63
5613 5966 3.307199 GGAGACCAATAAACCAGAACGGA 60.307 47.826 0.00 0.00 38.63 4.69
5614 5967 3.007635 GGAGACCAATAAACCAGAACGG 58.992 50.000 0.00 0.00 42.50 4.44
5615 5968 3.939066 AGGAGACCAATAAACCAGAACG 58.061 45.455 0.00 0.00 0.00 3.95
5616 5969 4.392138 CGAAGGAGACCAATAAACCAGAAC 59.608 45.833 0.00 0.00 0.00 3.01
5617 5970 4.041198 ACGAAGGAGACCAATAAACCAGAA 59.959 41.667 0.00 0.00 0.00 3.02
5618 5971 3.581332 ACGAAGGAGACCAATAAACCAGA 59.419 43.478 0.00 0.00 0.00 3.86
5619 5972 3.939066 ACGAAGGAGACCAATAAACCAG 58.061 45.455 0.00 0.00 0.00 4.00
5620 5973 5.687166 ATACGAAGGAGACCAATAAACCA 57.313 39.130 0.00 0.00 0.00 3.67
5621 5974 6.183360 CCAAATACGAAGGAGACCAATAAACC 60.183 42.308 0.00 0.00 0.00 3.27
5622 5975 6.677187 GCCAAATACGAAGGAGACCAATAAAC 60.677 42.308 0.00 0.00 0.00 2.01
5623 5976 5.355910 GCCAAATACGAAGGAGACCAATAAA 59.644 40.000 0.00 0.00 0.00 1.40
5624 5977 4.879545 GCCAAATACGAAGGAGACCAATAA 59.120 41.667 0.00 0.00 0.00 1.40
5625 5978 4.448210 GCCAAATACGAAGGAGACCAATA 58.552 43.478 0.00 0.00 0.00 1.90
5626 5979 3.279434 GCCAAATACGAAGGAGACCAAT 58.721 45.455 0.00 0.00 0.00 3.16
5627 5980 2.706890 GCCAAATACGAAGGAGACCAA 58.293 47.619 0.00 0.00 0.00 3.67
5628 5981 1.404986 CGCCAAATACGAAGGAGACCA 60.405 52.381 0.00 0.00 0.00 4.02
5629 5982 1.287425 CGCCAAATACGAAGGAGACC 58.713 55.000 0.00 0.00 0.00 3.85
5630 5983 1.134907 TCCGCCAAATACGAAGGAGAC 60.135 52.381 0.00 0.00 0.00 3.36
5631 5984 1.134907 GTCCGCCAAATACGAAGGAGA 60.135 52.381 0.00 0.00 0.00 3.71
5632 5985 1.287425 GTCCGCCAAATACGAAGGAG 58.713 55.000 0.00 0.00 0.00 3.69
5633 5986 0.609151 TGTCCGCCAAATACGAAGGA 59.391 50.000 0.00 0.00 0.00 3.36
5634 5987 1.006832 CTGTCCGCCAAATACGAAGG 58.993 55.000 0.00 0.00 0.00 3.46
5635 5988 1.722011 ACTGTCCGCCAAATACGAAG 58.278 50.000 0.00 0.00 0.00 3.79
5636 5989 2.070783 GAACTGTCCGCCAAATACGAA 58.929 47.619 0.00 0.00 0.00 3.85
5637 5990 1.274167 AGAACTGTCCGCCAAATACGA 59.726 47.619 0.00 0.00 0.00 3.43
5638 5991 1.393539 CAGAACTGTCCGCCAAATACG 59.606 52.381 0.00 0.00 0.00 3.06
5639 5992 2.695359 TCAGAACTGTCCGCCAAATAC 58.305 47.619 1.73 0.00 0.00 1.89
5640 5993 3.627395 ATCAGAACTGTCCGCCAAATA 57.373 42.857 1.73 0.00 0.00 1.40
5641 5994 2.496899 ATCAGAACTGTCCGCCAAAT 57.503 45.000 1.73 0.00 0.00 2.32
5642 5995 2.270352 AATCAGAACTGTCCGCCAAA 57.730 45.000 1.73 0.00 0.00 3.28
5643 5996 2.270352 AAATCAGAACTGTCCGCCAA 57.730 45.000 1.73 0.00 0.00 4.52
5644 5997 3.627395 ATAAATCAGAACTGTCCGCCA 57.373 42.857 1.73 0.00 0.00 5.69
5645 5998 3.065371 CCAATAAATCAGAACTGTCCGCC 59.935 47.826 1.73 0.00 0.00 6.13
5646 5999 3.689649 ACCAATAAATCAGAACTGTCCGC 59.310 43.478 1.73 0.00 0.00 5.54
5647 6000 7.409697 CAATACCAATAAATCAGAACTGTCCG 58.590 38.462 1.73 0.00 0.00 4.79
5648 6001 7.682021 GCCAATACCAATAAATCAGAACTGTCC 60.682 40.741 1.73 0.00 0.00 4.02
5649 6002 7.196331 GCCAATACCAATAAATCAGAACTGTC 58.804 38.462 1.73 0.00 0.00 3.51
5650 6003 6.183360 CGCCAATACCAATAAATCAGAACTGT 60.183 38.462 1.73 0.00 0.00 3.55
5651 6004 6.201517 CGCCAATACCAATAAATCAGAACTG 58.798 40.000 0.00 0.00 0.00 3.16
5652 6005 5.299279 CCGCCAATACCAATAAATCAGAACT 59.701 40.000 0.00 0.00 0.00 3.01
5653 6006 5.298276 TCCGCCAATACCAATAAATCAGAAC 59.702 40.000 0.00 0.00 0.00 3.01
5654 6007 5.298276 GTCCGCCAATACCAATAAATCAGAA 59.702 40.000 0.00 0.00 0.00 3.02
5655 6008 4.819630 GTCCGCCAATACCAATAAATCAGA 59.180 41.667 0.00 0.00 0.00 3.27
5656 6009 4.319477 CGTCCGCCAATACCAATAAATCAG 60.319 45.833 0.00 0.00 0.00 2.90
5657 6010 3.562141 CGTCCGCCAATACCAATAAATCA 59.438 43.478 0.00 0.00 0.00 2.57
5658 6011 3.562557 ACGTCCGCCAATACCAATAAATC 59.437 43.478 0.00 0.00 0.00 2.17
5659 6012 3.547746 ACGTCCGCCAATACCAATAAAT 58.452 40.909 0.00 0.00 0.00 1.40
5660 6013 2.988570 ACGTCCGCCAATACCAATAAA 58.011 42.857 0.00 0.00 0.00 1.40
5661 6014 2.695127 ACGTCCGCCAATACCAATAA 57.305 45.000 0.00 0.00 0.00 1.40
5662 6015 2.694628 ACTACGTCCGCCAATACCAATA 59.305 45.455 0.00 0.00 0.00 1.90
5663 6016 1.483415 ACTACGTCCGCCAATACCAAT 59.517 47.619 0.00 0.00 0.00 3.16
5664 6017 0.896923 ACTACGTCCGCCAATACCAA 59.103 50.000 0.00 0.00 0.00 3.67
5665 6018 0.896923 AACTACGTCCGCCAATACCA 59.103 50.000 0.00 0.00 0.00 3.25
5666 6019 1.135024 TGAACTACGTCCGCCAATACC 60.135 52.381 0.00 0.00 0.00 2.73
5667 6020 2.282701 TGAACTACGTCCGCCAATAC 57.717 50.000 0.00 0.00 0.00 1.89
5668 6021 3.316071 TTTGAACTACGTCCGCCAATA 57.684 42.857 0.00 0.00 0.00 1.90
5669 6022 2.172851 TTTGAACTACGTCCGCCAAT 57.827 45.000 0.00 0.00 0.00 3.16
5670 6023 2.172851 ATTTGAACTACGTCCGCCAA 57.827 45.000 0.00 0.00 0.00 4.52
5671 6024 3.056678 TCTTATTTGAACTACGTCCGCCA 60.057 43.478 0.00 0.00 0.00 5.69
5672 6025 3.514645 TCTTATTTGAACTACGTCCGCC 58.485 45.455 0.00 0.00 0.00 6.13
5673 6026 4.171754 ACTCTTATTTGAACTACGTCCGC 58.828 43.478 0.00 0.00 0.00 5.54
5674 6027 5.860182 TCAACTCTTATTTGAACTACGTCCG 59.140 40.000 0.00 0.00 29.89 4.79
5675 6028 6.643770 TGTCAACTCTTATTTGAACTACGTCC 59.356 38.462 0.00 0.00 34.78 4.79
5676 6029 7.633361 TGTCAACTCTTATTTGAACTACGTC 57.367 36.000 0.00 0.00 34.78 4.34
5677 6030 9.136952 GTATGTCAACTCTTATTTGAACTACGT 57.863 33.333 0.00 0.00 34.78 3.57
5678 6031 9.135843 TGTATGTCAACTCTTATTTGAACTACG 57.864 33.333 0.00 0.00 34.78 3.51
5687 6040 7.497249 GCCTGAAGATGTATGTCAACTCTTATT 59.503 37.037 0.00 0.00 0.00 1.40
5705 6058 6.014242 TCAACTCTTCTTATCTTGCCTGAAGA 60.014 38.462 0.00 0.00 45.03 2.87
5733 6099 1.833630 TCTGTGCTATGGGTCTCAAGG 59.166 52.381 0.00 0.00 0.00 3.61
5737 6103 3.677002 GCTCTGTGCTATGGGTCTC 57.323 57.895 0.00 0.00 38.95 3.36
5754 6143 4.685628 GTGCATAGAGCTTTAGATCAGAGC 59.314 45.833 0.00 0.96 45.94 4.09
5777 6171 5.039480 ACTGCGATTGTGAAAAGAGATTG 57.961 39.130 0.00 0.00 0.00 2.67
5816 6210 7.148490 GGATGGTGCTGCGTTTTTATTTTATTT 60.148 33.333 0.00 0.00 0.00 1.40
5876 6270 3.068873 GTGTGAGTTGTCAGTCTCTTCCT 59.931 47.826 8.06 0.00 31.53 3.36
5900 6294 9.733556 TGGTTGTGTAAATACTTCATACTCATT 57.266 29.630 0.00 0.00 0.00 2.57
5902 6296 9.378551 GATGGTTGTGTAAATACTTCATACTCA 57.621 33.333 0.00 0.00 0.00 3.41
5955 6353 1.489649 AGGATCATCTTCTGCTGGTGG 59.510 52.381 0.00 0.00 0.00 4.61
5986 6384 1.342574 TGGTGATCCTGTCCATCCGTA 60.343 52.381 0.00 0.00 34.23 4.02
6014 6412 6.750501 GCCGTGTATTAGGATTTTCTTTTTCC 59.249 38.462 0.00 0.00 0.00 3.13
6038 6450 2.892425 CCCCTCGTGCAATCTCGC 60.892 66.667 0.00 0.00 0.00 5.03
6044 6456 4.351938 CGTCGTCCCCTCGTGCAA 62.352 66.667 0.00 0.00 0.00 4.08
6048 6460 4.687215 TCGTCGTCGTCCCCTCGT 62.687 66.667 1.33 0.00 38.33 4.18
6091 6506 3.751049 CTAGTCCTAGGGCCGGCCA 62.751 68.421 44.46 26.34 37.98 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.