Multiple sequence alignment - TraesCS6D01G275700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G275700 chr6D 100.000 4669 0 0 1 4669 384424711 384429379 0.000000e+00 8623.0
1 TraesCS6D01G275700 chr6A 94.098 3219 137 24 1460 4664 528995267 528998446 0.000000e+00 4843.0
2 TraesCS6D01G275700 chr6A 93.846 585 26 3 875 1449 528994502 528995086 0.000000e+00 872.0
3 TraesCS6D01G275700 chr6A 85.166 391 47 7 480 866 106666601 106666984 1.580000e-104 390.0
4 TraesCS6D01G275700 chr6B 92.753 3146 128 38 900 3983 574660589 574663696 0.000000e+00 4455.0
5 TraesCS6D01G275700 chr6B 80.719 306 31 6 176 480 574660294 574660572 3.660000e-51 213.0
6 TraesCS6D01G275700 chr2D 88.251 383 37 8 481 861 128412104 128411728 7.120000e-123 451.0
7 TraesCS6D01G275700 chr5D 85.861 389 45 9 481 865 426400428 426400810 5.630000e-109 405.0
8 TraesCS6D01G275700 chr7B 85.128 390 48 9 481 866 339613229 339612846 1.580000e-104 390.0
9 TraesCS6D01G275700 chr7D 84.576 389 49 9 481 866 403785425 403785805 4.410000e-100 375.0
10 TraesCS6D01G275700 chr2B 83.929 392 49 12 481 866 641652981 641652598 3.430000e-96 363.0
11 TraesCS6D01G275700 chr3B 83.846 390 46 11 481 866 705568756 705569132 5.750000e-94 355.0
12 TraesCS6D01G275700 chr4B 83.333 396 52 11 481 869 575776239 575776627 2.070000e-93 353.0
13 TraesCS6D01G275700 chr3D 83.505 388 54 9 481 866 39619219 39619598 2.070000e-93 353.0
14 TraesCS6D01G275700 chr1D 87.755 49 5 1 229 277 43193413 43193460 6.530000e-04 56.5
15 TraesCS6D01G275700 chr1A 87.755 49 5 1 229 277 42555958 42556005 6.530000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G275700 chr6D 384424711 384429379 4668 False 8623.0 8623 100.000 1 4669 1 chr6D.!!$F1 4668
1 TraesCS6D01G275700 chr6A 528994502 528998446 3944 False 2857.5 4843 93.972 875 4664 2 chr6A.!!$F2 3789
2 TraesCS6D01G275700 chr6B 574660294 574663696 3402 False 2334.0 4455 86.736 176 3983 2 chr6B.!!$F1 3807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 484 0.107456 CAAGATCCCATCTCACCGGG 59.893 60.000 6.32 0.0 44.60 5.73 F
888 890 0.249447 CGATATGGCTCCTTGCGACA 60.249 55.000 0.00 0.0 44.05 4.35 F
1529 1750 0.107508 ATGCCGGTCCAGTTCATGAG 60.108 55.000 1.90 0.0 0.00 2.90 F
1605 1828 2.284190 GATGAGACTAGTTGGCTTGGC 58.716 52.381 0.00 0.0 31.30 4.52 F
1648 1871 5.069516 ACCTTGATTGAAGCACTCACATTTT 59.930 36.000 0.00 0.0 32.21 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1372 0.037590 TTTCCTAACAGCACCGGCAT 59.962 50.000 0.00 0.0 44.61 4.40 R
2212 2444 1.272490 CACGTGTATGTGAGGTCAGGT 59.728 52.381 7.58 0.0 42.55 4.00 R
2850 3084 3.119101 ACAGATCCAACGTGTATCTCACC 60.119 47.826 4.96 0.0 43.51 4.02 R
3179 3413 3.129462 GCTCCTTAAATTTGTCAGGCTCC 59.871 47.826 0.00 0.0 0.00 4.70 R
3671 3905 4.396790 ACACAACGTAAACACCACATTTCT 59.603 37.500 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 8.797350 TTTGGTAACTTAATAAGAAGTAGGGC 57.203 34.615 7.06 0.00 38.75 5.19
82 83 7.499200 TGGTAACTTAATAAGAAGTAGGGCA 57.501 36.000 7.06 0.00 38.75 5.36
83 84 7.562135 TGGTAACTTAATAAGAAGTAGGGCAG 58.438 38.462 7.06 0.00 38.75 4.85
84 85 6.482641 GGTAACTTAATAAGAAGTAGGGCAGC 59.517 42.308 7.06 0.00 38.75 5.25
85 86 5.037383 ACTTAATAAGAAGTAGGGCAGCC 57.963 43.478 1.26 1.26 37.90 4.85
86 87 2.622064 AATAAGAAGTAGGGCAGCCG 57.378 50.000 5.00 0.00 0.00 5.52
87 88 1.789523 ATAAGAAGTAGGGCAGCCGA 58.210 50.000 5.00 0.00 0.00 5.54
88 89 1.112113 TAAGAAGTAGGGCAGCCGAG 58.888 55.000 5.00 0.00 0.00 4.63
89 90 0.905337 AAGAAGTAGGGCAGCCGAGT 60.905 55.000 5.00 0.00 0.00 4.18
90 91 1.142097 GAAGTAGGGCAGCCGAGTC 59.858 63.158 5.00 0.00 0.00 3.36
91 92 1.605058 GAAGTAGGGCAGCCGAGTCA 61.605 60.000 5.00 0.00 0.00 3.41
92 93 0.978146 AAGTAGGGCAGCCGAGTCAT 60.978 55.000 5.00 0.00 0.00 3.06
93 94 0.978146 AGTAGGGCAGCCGAGTCATT 60.978 55.000 5.00 0.00 0.00 2.57
94 95 0.107654 GTAGGGCAGCCGAGTCATTT 60.108 55.000 5.00 0.00 0.00 2.32
95 96 0.618458 TAGGGCAGCCGAGTCATTTT 59.382 50.000 5.00 0.00 0.00 1.82
96 97 0.251341 AGGGCAGCCGAGTCATTTTT 60.251 50.000 5.00 0.00 0.00 1.94
97 98 0.171231 GGGCAGCCGAGTCATTTTTC 59.829 55.000 5.00 0.00 0.00 2.29
98 99 0.881118 GGCAGCCGAGTCATTTTTCA 59.119 50.000 0.00 0.00 0.00 2.69
99 100 1.269448 GGCAGCCGAGTCATTTTTCAA 59.731 47.619 0.00 0.00 0.00 2.69
100 101 2.589014 GCAGCCGAGTCATTTTTCAAG 58.411 47.619 0.00 0.00 0.00 3.02
101 102 2.226437 GCAGCCGAGTCATTTTTCAAGA 59.774 45.455 0.00 0.00 0.00 3.02
102 103 3.304659 GCAGCCGAGTCATTTTTCAAGAA 60.305 43.478 0.00 0.00 0.00 2.52
103 104 4.792704 GCAGCCGAGTCATTTTTCAAGAAA 60.793 41.667 0.00 0.00 0.00 2.52
104 105 5.280945 CAGCCGAGTCATTTTTCAAGAAAA 58.719 37.500 3.98 3.98 38.40 2.29
105 106 5.173854 CAGCCGAGTCATTTTTCAAGAAAAC 59.826 40.000 7.44 0.00 39.70 2.43
106 107 4.444388 GCCGAGTCATTTTTCAAGAAAACC 59.556 41.667 7.44 0.00 39.70 3.27
107 108 4.675114 CCGAGTCATTTTTCAAGAAAACCG 59.325 41.667 7.44 2.89 39.70 4.44
108 109 4.675114 CGAGTCATTTTTCAAGAAAACCGG 59.325 41.667 0.00 0.00 39.70 5.28
109 110 5.588240 GAGTCATTTTTCAAGAAAACCGGT 58.412 37.500 0.00 0.00 39.70 5.28
110 111 5.348164 AGTCATTTTTCAAGAAAACCGGTG 58.652 37.500 8.52 0.00 39.70 4.94
111 112 5.105513 AGTCATTTTTCAAGAAAACCGGTGT 60.106 36.000 8.52 0.00 39.70 4.16
112 113 6.095720 AGTCATTTTTCAAGAAAACCGGTGTA 59.904 34.615 8.52 0.00 39.70 2.90
113 114 6.752815 GTCATTTTTCAAGAAAACCGGTGTAA 59.247 34.615 8.52 0.00 39.70 2.41
114 115 7.275999 GTCATTTTTCAAGAAAACCGGTGTAAA 59.724 33.333 8.52 0.00 39.70 2.01
115 116 7.817962 TCATTTTTCAAGAAAACCGGTGTAAAA 59.182 29.630 8.52 5.52 39.70 1.52
116 117 7.958053 TTTTTCAAGAAAACCGGTGTAAAAA 57.042 28.000 8.52 9.48 39.70 1.94
142 143 6.569179 ACATGTGGACTTTTTGTATACACC 57.431 37.500 4.68 3.00 30.80 4.16
143 144 6.303839 ACATGTGGACTTTTTGTATACACCT 58.696 36.000 4.68 0.00 30.80 4.00
144 145 6.775629 ACATGTGGACTTTTTGTATACACCTT 59.224 34.615 4.68 0.00 30.80 3.50
145 146 6.627395 TGTGGACTTTTTGTATACACCTTG 57.373 37.500 4.68 0.00 31.27 3.61
146 147 6.358178 TGTGGACTTTTTGTATACACCTTGA 58.642 36.000 4.68 0.00 31.27 3.02
147 148 6.829298 TGTGGACTTTTTGTATACACCTTGAA 59.171 34.615 4.68 0.00 31.27 2.69
148 149 7.136772 GTGGACTTTTTGTATACACCTTGAAC 58.863 38.462 4.68 0.00 0.00 3.18
149 150 6.829298 TGGACTTTTTGTATACACCTTGAACA 59.171 34.615 4.68 0.00 0.00 3.18
150 151 7.504238 TGGACTTTTTGTATACACCTTGAACAT 59.496 33.333 4.68 0.00 0.00 2.71
151 152 8.357402 GGACTTTTTGTATACACCTTGAACATT 58.643 33.333 4.68 0.00 0.00 2.71
152 153 9.744468 GACTTTTTGTATACACCTTGAACATTT 57.256 29.630 4.68 0.00 0.00 2.32
155 156 8.789881 TTTTGTATACACCTTGAACATTTTCG 57.210 30.769 4.68 0.00 34.04 3.46
156 157 7.499321 TTGTATACACCTTGAACATTTTCGT 57.501 32.000 4.68 0.00 34.04 3.85
157 158 7.499321 TGTATACACCTTGAACATTTTCGTT 57.501 32.000 0.08 0.00 34.04 3.85
158 159 7.932335 TGTATACACCTTGAACATTTTCGTTT 58.068 30.769 0.08 0.00 34.04 3.60
159 160 9.053840 TGTATACACCTTGAACATTTTCGTTTA 57.946 29.630 0.08 0.00 34.04 2.01
160 161 9.321590 GTATACACCTTGAACATTTTCGTTTAC 57.678 33.333 0.00 0.00 34.04 2.01
161 162 6.197364 ACACCTTGAACATTTTCGTTTACA 57.803 33.333 0.00 0.00 34.04 2.41
162 163 6.801575 ACACCTTGAACATTTTCGTTTACAT 58.198 32.000 0.00 0.00 34.04 2.29
163 164 7.262048 ACACCTTGAACATTTTCGTTTACATT 58.738 30.769 0.00 0.00 34.04 2.71
164 165 7.762159 ACACCTTGAACATTTTCGTTTACATTT 59.238 29.630 0.00 0.00 34.04 2.32
165 166 9.239002 CACCTTGAACATTTTCGTTTACATTTA 57.761 29.630 0.00 0.00 34.04 1.40
166 167 9.974980 ACCTTGAACATTTTCGTTTACATTTAT 57.025 25.926 0.00 0.00 34.04 1.40
281 282 8.945481 AACACATGATGAACATTTTTCAAGAA 57.055 26.923 0.00 0.00 37.07 2.52
309 310 9.056005 GTTATTAACATCTCCATAGAACATGCA 57.944 33.333 1.62 0.00 34.73 3.96
310 311 7.741027 ATTAACATCTCCATAGAACATGCAG 57.259 36.000 0.00 0.00 34.73 4.41
311 312 4.082665 ACATCTCCATAGAACATGCAGG 57.917 45.455 0.00 0.00 34.73 4.85
319 320 5.655974 TCCATAGAACATGCAGGCATTTTTA 59.344 36.000 3.57 3.67 33.90 1.52
330 331 7.418840 TGCAGGCATTTTTAAAGTGTTTATG 57.581 32.000 2.38 0.00 0.00 1.90
473 475 4.104086 TGAGACAGTAACCAAGATCCCAT 58.896 43.478 0.00 0.00 0.00 4.00
480 482 0.833287 ACCAAGATCCCATCTCACCG 59.167 55.000 0.00 0.00 39.08 4.94
482 484 0.107456 CAAGATCCCATCTCACCGGG 59.893 60.000 6.32 0.00 44.60 5.73
486 488 4.963878 CCCATCTCACCGGGAAAG 57.036 61.111 6.32 0.00 46.34 2.62
487 489 1.991230 CCCATCTCACCGGGAAAGT 59.009 57.895 6.32 0.00 46.34 2.66
488 490 1.200519 CCCATCTCACCGGGAAAGTA 58.799 55.000 6.32 0.00 46.34 2.24
489 491 1.768870 CCCATCTCACCGGGAAAGTAT 59.231 52.381 6.32 0.00 46.34 2.12
490 492 2.224305 CCCATCTCACCGGGAAAGTATC 60.224 54.545 6.32 0.00 46.34 2.24
492 494 3.118408 CCATCTCACCGGGAAAGTATCAA 60.118 47.826 6.32 0.00 0.00 2.57
493 495 3.887621 TCTCACCGGGAAAGTATCAAG 57.112 47.619 6.32 0.00 0.00 3.02
494 496 3.170717 TCTCACCGGGAAAGTATCAAGT 58.829 45.455 6.32 0.00 0.00 3.16
495 497 4.346730 TCTCACCGGGAAAGTATCAAGTA 58.653 43.478 6.32 0.00 0.00 2.24
496 498 4.159135 TCTCACCGGGAAAGTATCAAGTAC 59.841 45.833 6.32 0.00 0.00 2.73
497 499 4.091549 TCACCGGGAAAGTATCAAGTACT 58.908 43.478 6.32 0.00 45.56 2.73
498 500 4.159135 TCACCGGGAAAGTATCAAGTACTC 59.841 45.833 6.32 0.00 42.83 2.59
499 501 3.450096 ACCGGGAAAGTATCAAGTACTCC 59.550 47.826 6.32 0.00 42.83 3.85
500 502 3.181468 CCGGGAAAGTATCAAGTACTCCC 60.181 52.174 0.00 0.00 42.83 4.30
501 503 3.449737 CGGGAAAGTATCAAGTACTCCCA 59.550 47.826 10.62 0.00 43.32 4.37
502 504 4.101119 CGGGAAAGTATCAAGTACTCCCAT 59.899 45.833 10.62 0.47 43.32 4.00
503 505 5.612351 GGGAAAGTATCAAGTACTCCCATC 58.388 45.833 0.00 0.00 42.96 3.51
504 506 5.454897 GGGAAAGTATCAAGTACTCCCATCC 60.455 48.000 0.00 0.00 42.96 3.51
505 507 5.367060 GGAAAGTATCAAGTACTCCCATCCT 59.633 44.000 0.00 0.00 42.83 3.24
506 508 6.126739 GGAAAGTATCAAGTACTCCCATCCTT 60.127 42.308 0.00 0.00 42.83 3.36
507 509 5.878406 AGTATCAAGTACTCCCATCCTTG 57.122 43.478 0.00 0.00 39.46 3.61
508 510 4.656112 AGTATCAAGTACTCCCATCCTTGG 59.344 45.833 0.00 0.00 39.46 3.61
517 519 3.341833 CCATCCTTGGGGTACTCCT 57.658 57.895 14.34 0.00 39.56 3.69
518 520 0.839946 CCATCCTTGGGGTACTCCTG 59.160 60.000 14.34 5.85 39.56 3.86
519 521 0.839946 CATCCTTGGGGTACTCCTGG 59.160 60.000 14.34 15.06 35.33 4.45
520 522 0.421904 ATCCTTGGGGTACTCCTGGT 59.578 55.000 14.34 3.91 35.33 4.00
521 523 0.546747 TCCTTGGGGTACTCCTGGTG 60.547 60.000 14.34 0.00 35.33 4.17
522 524 1.299976 CTTGGGGTACTCCTGGTGC 59.700 63.158 14.34 0.00 35.33 5.01
523 525 1.151899 TTGGGGTACTCCTGGTGCT 60.152 57.895 14.34 0.00 35.33 4.40
524 526 1.198759 TTGGGGTACTCCTGGTGCTC 61.199 60.000 14.34 0.00 35.33 4.26
525 527 2.368011 GGGGTACTCCTGGTGCTCC 61.368 68.421 3.84 0.00 43.61 4.70
526 528 1.612442 GGGTACTCCTGGTGCTCCA 60.612 63.158 7.39 7.39 42.05 3.86
527 529 1.198759 GGGTACTCCTGGTGCTCCAA 61.199 60.000 9.14 0.00 43.81 3.53
528 530 0.690762 GGTACTCCTGGTGCTCCAAA 59.309 55.000 9.14 0.00 43.81 3.28
529 531 1.282157 GGTACTCCTGGTGCTCCAAAT 59.718 52.381 9.14 0.00 43.81 2.32
530 532 2.290960 GGTACTCCTGGTGCTCCAAATT 60.291 50.000 9.14 0.00 43.81 1.82
531 533 3.054655 GGTACTCCTGGTGCTCCAAATTA 60.055 47.826 9.14 0.00 43.81 1.40
532 534 3.806949 ACTCCTGGTGCTCCAAATTAA 57.193 42.857 9.14 0.00 43.81 1.40
533 535 4.112634 ACTCCTGGTGCTCCAAATTAAA 57.887 40.909 9.14 0.00 43.81 1.52
534 536 4.479158 ACTCCTGGTGCTCCAAATTAAAA 58.521 39.130 9.14 0.00 43.81 1.52
535 537 4.898861 ACTCCTGGTGCTCCAAATTAAAAA 59.101 37.500 9.14 0.00 43.81 1.94
609 611 5.615925 ACAAGGAATGTGACTACTATCCC 57.384 43.478 0.00 0.00 41.93 3.85
610 612 5.281314 ACAAGGAATGTGACTACTATCCCT 58.719 41.667 0.00 0.00 41.93 4.20
611 613 6.441222 ACAAGGAATGTGACTACTATCCCTA 58.559 40.000 0.00 0.00 41.93 3.53
612 614 6.901300 ACAAGGAATGTGACTACTATCCCTAA 59.099 38.462 0.00 0.00 41.93 2.69
613 615 7.402071 ACAAGGAATGTGACTACTATCCCTAAA 59.598 37.037 0.00 0.00 41.93 1.85
614 616 7.989947 AGGAATGTGACTACTATCCCTAAAA 57.010 36.000 0.00 0.00 34.68 1.52
615 617 8.388656 AGGAATGTGACTACTATCCCTAAAAA 57.611 34.615 0.00 0.00 34.68 1.94
616 618 9.004231 AGGAATGTGACTACTATCCCTAAAAAT 57.996 33.333 0.00 0.00 34.68 1.82
617 619 9.628500 GGAATGTGACTACTATCCCTAAAAATT 57.372 33.333 0.00 0.00 0.00 1.82
621 623 9.667107 TGTGACTACTATCCCTAAAAATTTCAG 57.333 33.333 0.00 0.00 0.00 3.02
622 624 9.110502 GTGACTACTATCCCTAAAAATTTCAGG 57.889 37.037 10.53 10.53 0.00 3.86
623 625 8.832735 TGACTACTATCCCTAAAAATTTCAGGT 58.167 33.333 14.55 3.74 0.00 4.00
624 626 9.327628 GACTACTATCCCTAAAAATTTCAGGTC 57.672 37.037 14.55 3.46 0.00 3.85
625 627 8.272889 ACTACTATCCCTAAAAATTTCAGGTCC 58.727 37.037 14.55 0.00 0.00 4.46
626 628 7.039722 ACTATCCCTAAAAATTTCAGGTCCA 57.960 36.000 14.55 2.99 0.00 4.02
627 629 7.475299 ACTATCCCTAAAAATTTCAGGTCCAA 58.525 34.615 14.55 2.42 0.00 3.53
628 630 7.953493 ACTATCCCTAAAAATTTCAGGTCCAAA 59.047 33.333 14.55 0.00 0.00 3.28
629 631 6.413783 TCCCTAAAAATTTCAGGTCCAAAC 57.586 37.500 14.55 0.00 0.00 2.93
630 632 6.140377 TCCCTAAAAATTTCAGGTCCAAACT 58.860 36.000 14.55 0.00 0.00 2.66
631 633 6.613679 TCCCTAAAAATTTCAGGTCCAAACTT 59.386 34.615 14.55 0.00 0.00 2.66
632 634 6.705825 CCCTAAAAATTTCAGGTCCAAACTTG 59.294 38.462 14.55 0.00 33.94 3.16
633 635 7.418483 CCCTAAAAATTTCAGGTCCAAACTTGA 60.418 37.037 14.55 0.00 39.50 3.02
634 636 7.984617 CCTAAAAATTTCAGGTCCAAACTTGAA 59.015 33.333 9.62 0.00 46.26 2.69
638 640 1.673920 TCAGGTCCAAACTTGAAACGC 59.326 47.619 0.00 0.00 38.43 4.84
639 641 1.403679 CAGGTCCAAACTTGAAACGCA 59.596 47.619 0.00 0.00 34.53 5.24
640 642 1.404035 AGGTCCAAACTTGAAACGCAC 59.596 47.619 0.00 0.00 0.00 5.34
641 643 1.133407 GGTCCAAACTTGAAACGCACA 59.867 47.619 0.00 0.00 0.00 4.57
642 644 2.223711 GGTCCAAACTTGAAACGCACAT 60.224 45.455 0.00 0.00 0.00 3.21
643 645 3.443976 GTCCAAACTTGAAACGCACATT 58.556 40.909 0.00 0.00 0.00 2.71
644 646 3.242712 GTCCAAACTTGAAACGCACATTG 59.757 43.478 0.00 0.00 0.00 2.82
645 647 3.129462 TCCAAACTTGAAACGCACATTGA 59.871 39.130 0.00 0.00 0.00 2.57
646 648 3.486841 CCAAACTTGAAACGCACATTGAG 59.513 43.478 0.00 0.00 0.00 3.02
647 649 4.350346 CAAACTTGAAACGCACATTGAGA 58.650 39.130 0.00 0.00 0.00 3.27
648 650 4.630894 AACTTGAAACGCACATTGAGAA 57.369 36.364 0.00 0.00 0.00 2.87
649 651 4.630894 ACTTGAAACGCACATTGAGAAA 57.369 36.364 0.00 0.00 0.00 2.52
650 652 4.992688 ACTTGAAACGCACATTGAGAAAA 58.007 34.783 0.00 0.00 0.00 2.29
651 653 5.406649 ACTTGAAACGCACATTGAGAAAAA 58.593 33.333 0.00 0.00 0.00 1.94
692 694 8.294341 CACGAATAGTGTAAGAGAAAAAGACA 57.706 34.615 0.00 0.00 45.51 3.41
693 695 8.761497 CACGAATAGTGTAAGAGAAAAAGACAA 58.239 33.333 0.00 0.00 45.51 3.18
694 696 9.321562 ACGAATAGTGTAAGAGAAAAAGACAAA 57.678 29.630 0.00 0.00 0.00 2.83
697 699 9.952188 AATAGTGTAAGAGAAAAAGACAAAAGC 57.048 29.630 0.00 0.00 0.00 3.51
698 700 7.391148 AGTGTAAGAGAAAAAGACAAAAGCA 57.609 32.000 0.00 0.00 0.00 3.91
699 701 7.826690 AGTGTAAGAGAAAAAGACAAAAGCAA 58.173 30.769 0.00 0.00 0.00 3.91
700 702 7.755373 AGTGTAAGAGAAAAAGACAAAAGCAAC 59.245 33.333 0.00 0.00 0.00 4.17
701 703 7.540745 GTGTAAGAGAAAAAGACAAAAGCAACA 59.459 33.333 0.00 0.00 0.00 3.33
702 704 8.250332 TGTAAGAGAAAAAGACAAAAGCAACAT 58.750 29.630 0.00 0.00 0.00 2.71
703 705 9.087424 GTAAGAGAAAAAGACAAAAGCAACATT 57.913 29.630 0.00 0.00 0.00 2.71
704 706 7.529880 AGAGAAAAAGACAAAAGCAACATTG 57.470 32.000 0.00 0.00 0.00 2.82
705 707 7.322664 AGAGAAAAAGACAAAAGCAACATTGA 58.677 30.769 0.00 0.00 0.00 2.57
706 708 7.276438 AGAGAAAAAGACAAAAGCAACATTGAC 59.724 33.333 0.00 0.00 0.00 3.18
707 709 6.873076 AGAAAAAGACAAAAGCAACATTGACA 59.127 30.769 0.00 0.00 0.00 3.58
708 710 6.407475 AAAAGACAAAAGCAACATTGACAC 57.593 33.333 0.00 0.00 0.00 3.67
709 711 4.989279 AGACAAAAGCAACATTGACACT 57.011 36.364 0.00 0.00 0.00 3.55
710 712 6.449635 AAGACAAAAGCAACATTGACACTA 57.550 33.333 0.00 0.00 0.00 2.74
711 713 6.639632 AGACAAAAGCAACATTGACACTAT 57.360 33.333 0.00 0.00 0.00 2.12
712 714 7.042797 AGACAAAAGCAACATTGACACTATT 57.957 32.000 0.00 0.00 0.00 1.73
713 715 7.141363 AGACAAAAGCAACATTGACACTATTC 58.859 34.615 0.00 0.00 0.00 1.75
714 716 6.804677 ACAAAAGCAACATTGACACTATTCA 58.195 32.000 0.00 0.00 0.00 2.57
715 717 6.697019 ACAAAAGCAACATTGACACTATTCAC 59.303 34.615 0.00 0.00 0.00 3.18
716 718 6.389830 AAAGCAACATTGACACTATTCACA 57.610 33.333 0.00 0.00 0.00 3.58
717 719 6.579666 AAGCAACATTGACACTATTCACAT 57.420 33.333 0.00 0.00 0.00 3.21
718 720 6.187125 AGCAACATTGACACTATTCACATC 57.813 37.500 0.00 0.00 0.00 3.06
719 721 5.942236 AGCAACATTGACACTATTCACATCT 59.058 36.000 0.00 0.00 0.00 2.90
720 722 6.025896 GCAACATTGACACTATTCACATCTG 58.974 40.000 0.00 0.00 0.00 2.90
721 723 6.549061 CAACATTGACACTATTCACATCTGG 58.451 40.000 0.00 0.00 0.00 3.86
722 724 6.053632 ACATTGACACTATTCACATCTGGA 57.946 37.500 0.00 0.00 0.00 3.86
723 725 6.475504 ACATTGACACTATTCACATCTGGAA 58.524 36.000 0.00 0.00 0.00 3.53
724 726 7.114754 ACATTGACACTATTCACATCTGGAAT 58.885 34.615 0.00 0.00 38.46 3.01
725 727 7.613022 ACATTGACACTATTCACATCTGGAATT 59.387 33.333 0.00 0.00 36.45 2.17
726 728 7.615582 TTGACACTATTCACATCTGGAATTC 57.384 36.000 0.00 0.00 36.45 2.17
727 729 6.710278 TGACACTATTCACATCTGGAATTCA 58.290 36.000 7.93 0.00 36.45 2.57
728 730 6.595326 TGACACTATTCACATCTGGAATTCAC 59.405 38.462 7.93 0.00 36.45 3.18
729 731 6.715280 ACACTATTCACATCTGGAATTCACT 58.285 36.000 7.93 0.00 36.45 3.41
730 732 7.170965 ACACTATTCACATCTGGAATTCACTT 58.829 34.615 7.93 0.00 36.45 3.16
731 733 7.667219 ACACTATTCACATCTGGAATTCACTTT 59.333 33.333 7.93 0.00 36.45 2.66
732 734 8.517878 CACTATTCACATCTGGAATTCACTTTT 58.482 33.333 7.93 0.00 36.45 2.27
733 735 9.082313 ACTATTCACATCTGGAATTCACTTTTT 57.918 29.630 7.93 0.00 36.45 1.94
757 759 8.918961 TTTGTTTTTCAATGTGTATTTCGAGT 57.081 26.923 0.00 0.00 35.84 4.18
758 760 8.918961 TTGTTTTTCAATGTGTATTTCGAGTT 57.081 26.923 0.00 0.00 0.00 3.01
759 761 8.918961 TGTTTTTCAATGTGTATTTCGAGTTT 57.081 26.923 0.00 0.00 0.00 2.66
760 762 8.802856 TGTTTTTCAATGTGTATTTCGAGTTTG 58.197 29.630 0.00 0.00 0.00 2.93
761 763 7.922505 TTTTCAATGTGTATTTCGAGTTTGG 57.077 32.000 0.00 0.00 0.00 3.28
762 764 6.869315 TTCAATGTGTATTTCGAGTTTGGA 57.131 33.333 0.00 0.00 0.00 3.53
763 765 7.447374 TTCAATGTGTATTTCGAGTTTGGAT 57.553 32.000 0.00 0.00 0.00 3.41
764 766 7.072177 TCAATGTGTATTTCGAGTTTGGATC 57.928 36.000 0.00 0.00 0.00 3.36
765 767 6.878923 TCAATGTGTATTTCGAGTTTGGATCT 59.121 34.615 0.00 0.00 0.00 2.75
766 768 6.668541 ATGTGTATTTCGAGTTTGGATCTG 57.331 37.500 0.00 0.00 0.00 2.90
767 769 5.789521 TGTGTATTTCGAGTTTGGATCTGA 58.210 37.500 0.00 0.00 0.00 3.27
768 770 6.227522 TGTGTATTTCGAGTTTGGATCTGAA 58.772 36.000 0.00 0.00 0.00 3.02
769 771 6.708502 TGTGTATTTCGAGTTTGGATCTGAAA 59.291 34.615 0.00 0.00 0.00 2.69
770 772 7.390440 TGTGTATTTCGAGTTTGGATCTGAAAT 59.610 33.333 0.00 3.82 38.92 2.17
771 773 8.237267 GTGTATTTCGAGTTTGGATCTGAAATT 58.763 33.333 3.67 0.00 37.29 1.82
772 774 8.792633 TGTATTTCGAGTTTGGATCTGAAATTT 58.207 29.630 3.67 0.00 37.29 1.82
773 775 9.626045 GTATTTCGAGTTTGGATCTGAAATTTT 57.374 29.630 3.67 0.00 37.29 1.82
776 778 9.677567 TTTCGAGTTTGGATCTGAAATTTTTAG 57.322 29.630 0.00 0.00 0.00 1.85
777 779 8.615878 TCGAGTTTGGATCTGAAATTTTTAGA 57.384 30.769 6.13 6.13 0.00 2.10
778 780 9.062524 TCGAGTTTGGATCTGAAATTTTTAGAA 57.937 29.630 7.60 0.00 0.00 2.10
779 781 9.334693 CGAGTTTGGATCTGAAATTTTTAGAAG 57.665 33.333 7.60 0.00 0.00 2.85
798 800 8.958119 TTAGAAGTTGTAGTCACATTCTTTGT 57.042 30.769 0.00 0.00 39.91 2.83
813 815 8.721019 ACATTCTTTGTGAACATTGACATTTT 57.279 26.923 0.00 0.00 37.11 1.82
814 816 9.165035 ACATTCTTTGTGAACATTGACATTTTT 57.835 25.926 0.00 0.00 37.11 1.94
871 873 5.759506 TTTTTAATTTGGAGCACAGTCGA 57.240 34.783 0.00 0.00 0.00 4.20
872 874 5.957842 TTTTAATTTGGAGCACAGTCGAT 57.042 34.783 0.00 0.00 0.00 3.59
873 875 7.441890 TTTTTAATTTGGAGCACAGTCGATA 57.558 32.000 0.00 0.00 0.00 2.92
888 890 0.249447 CGATATGGCTCCTTGCGACA 60.249 55.000 0.00 0.00 44.05 4.35
889 891 1.506493 GATATGGCTCCTTGCGACAG 58.494 55.000 0.00 0.00 44.05 3.51
890 892 0.833287 ATATGGCTCCTTGCGACAGT 59.167 50.000 0.00 0.00 44.05 3.55
897 899 2.186076 CTCCTTGCGACAGTCGAATAC 58.814 52.381 27.29 9.19 43.74 1.89
907 910 4.517815 TCGAATACGCCACCCCGC 62.518 66.667 0.00 0.00 39.58 6.13
1027 1033 2.447714 GCCATGAGACCCTCCTCCC 61.448 68.421 0.00 0.00 32.32 4.30
1206 1237 5.192927 TGGATAAGAGCGATGGTTTTGAAT 58.807 37.500 0.00 0.00 0.00 2.57
1207 1238 5.296780 TGGATAAGAGCGATGGTTTTGAATC 59.703 40.000 0.00 0.00 0.00 2.52
1328 1372 5.880332 AGTTCGAGGCTTGCTTTATTTATGA 59.120 36.000 0.00 0.00 0.00 2.15
1334 1378 3.983344 GCTTGCTTTATTTATGATGCCGG 59.017 43.478 0.00 0.00 0.00 6.13
1436 1488 2.291465 TGCAACTCTGAAATGCTGTCAC 59.709 45.455 13.40 0.00 40.66 3.67
1529 1750 0.107508 ATGCCGGTCCAGTTCATGAG 60.108 55.000 1.90 0.00 0.00 2.90
1539 1760 3.264193 TCCAGTTCATGAGCAGGTAATGT 59.736 43.478 18.36 0.00 0.00 2.71
1555 1776 7.040961 GCAGGTAATGTTAAGTTGGTAGTGAAA 60.041 37.037 0.00 0.00 0.00 2.69
1600 1823 5.948992 AAAAGTTGATGAGACTAGTTGGC 57.051 39.130 0.00 0.00 0.00 4.52
1605 1828 2.284190 GATGAGACTAGTTGGCTTGGC 58.716 52.381 0.00 0.00 31.30 4.52
1633 1856 6.705381 TGCTTGGTGAAAATTTACCTTGATTG 59.295 34.615 10.72 0.00 37.84 2.67
1648 1871 5.069516 ACCTTGATTGAAGCACTCACATTTT 59.930 36.000 0.00 0.00 32.21 1.82
1668 1899 7.867403 ACATTTTATTGAGTGTGTCCAATGTTC 59.133 33.333 0.00 0.00 35.02 3.18
1792 2024 5.222631 AGAAACGACAATTCTCAAAATGCC 58.777 37.500 0.00 0.00 31.61 4.40
1986 2218 5.140177 CAGAGTGTACAACGCAAGAATTTC 58.860 41.667 0.00 0.00 43.62 2.17
2265 2497 8.097038 TGGCAATAAAATTAAGTTATGCCAACA 58.903 29.630 26.69 13.37 39.47 3.33
2412 2644 6.264832 CCGTTGAATACATACATTTGCATGT 58.735 36.000 0.00 0.00 46.07 3.21
2552 2784 5.947228 TCTTGAAGAAATCGCTGTTCATT 57.053 34.783 0.00 0.00 0.00 2.57
2834 3068 6.610075 ATGTGAGGAAATAATGCCTGTTTT 57.390 33.333 0.00 0.00 33.84 2.43
2835 3069 5.782047 TGTGAGGAAATAATGCCTGTTTTG 58.218 37.500 0.00 0.00 33.84 2.44
3179 3413 1.903877 AAGATGACCTGCCTGACCCG 61.904 60.000 0.00 0.00 0.00 5.28
3285 3519 0.756294 TCTTGCCGAGGAAACACTCA 59.244 50.000 0.00 0.00 37.34 3.41
3350 3584 2.567615 GAGGTATTCAGTGAGGGTGTGT 59.432 50.000 0.00 0.00 0.00 3.72
3443 3677 1.211212 CAGAGGAATGGACAGCATGGA 59.789 52.381 0.00 0.00 43.62 3.41
3575 3809 4.034394 GCTGTCGTTGAGATATGCATTCAA 59.966 41.667 3.54 6.33 0.00 2.69
3670 3904 1.464997 GGCTGAAATGGTCGTCTGAAC 59.535 52.381 0.00 0.00 0.00 3.18
3823 4059 6.922957 TGGTAAATTTTGTCTGTTTCAGATGC 59.077 34.615 0.00 0.00 42.73 3.91
3872 4115 1.211212 TCTGAGGAATGTCATGGCCAG 59.789 52.381 13.05 3.43 0.00 4.85
3873 4116 0.994247 TGAGGAATGTCATGGCCAGT 59.006 50.000 13.05 0.00 0.00 4.00
3874 4117 1.340308 TGAGGAATGTCATGGCCAGTG 60.340 52.381 13.05 10.20 0.00 3.66
3875 4118 0.033796 AGGAATGTCATGGCCAGTGG 60.034 55.000 13.05 4.20 0.00 4.00
4005 4249 9.190317 TGCAGAATCTAGTATTTCTAGTTCAGA 57.810 33.333 13.66 0.00 44.59 3.27
4111 4355 6.047231 TCCTATTAGTCGCTTTAAGCCTTTC 58.953 40.000 11.64 0.00 38.18 2.62
4381 4626 8.707938 TGTCATACATTTTCTGTGATCTACTG 57.292 34.615 0.00 0.00 38.92 2.74
4638 4884 3.140325 TCCAAGGTAAAAGAGCACCAG 57.860 47.619 0.00 0.00 37.28 4.00
4639 4885 2.708861 TCCAAGGTAAAAGAGCACCAGA 59.291 45.455 0.00 0.00 37.28 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.404848 GCCCTACTTCTTATTAAGTTACCAAAT 57.595 33.333 3.45 0.00 40.20 2.32
56 57 8.384718 TGCCCTACTTCTTATTAAGTTACCAAA 58.615 33.333 3.45 0.00 40.20 3.28
57 58 7.920227 TGCCCTACTTCTTATTAAGTTACCAA 58.080 34.615 3.45 0.00 40.20 3.67
58 59 7.499200 TGCCCTACTTCTTATTAAGTTACCA 57.501 36.000 3.45 0.00 40.20 3.25
59 60 6.482641 GCTGCCCTACTTCTTATTAAGTTACC 59.517 42.308 3.45 0.00 40.20 2.85
60 61 6.482641 GGCTGCCCTACTTCTTATTAAGTTAC 59.517 42.308 7.66 0.00 40.20 2.50
61 62 6.589135 GGCTGCCCTACTTCTTATTAAGTTA 58.411 40.000 7.66 0.00 40.20 2.24
62 63 5.437946 GGCTGCCCTACTTCTTATTAAGTT 58.562 41.667 7.66 0.00 40.20 2.66
63 64 4.443034 CGGCTGCCCTACTTCTTATTAAGT 60.443 45.833 14.12 0.00 42.31 2.24
64 65 4.058817 CGGCTGCCCTACTTCTTATTAAG 58.941 47.826 14.12 0.00 0.00 1.85
65 66 3.707611 TCGGCTGCCCTACTTCTTATTAA 59.292 43.478 14.12 0.00 0.00 1.40
66 67 3.302161 TCGGCTGCCCTACTTCTTATTA 58.698 45.455 14.12 0.00 0.00 0.98
67 68 2.103263 CTCGGCTGCCCTACTTCTTATT 59.897 50.000 14.12 0.00 0.00 1.40
68 69 1.689273 CTCGGCTGCCCTACTTCTTAT 59.311 52.381 14.12 0.00 0.00 1.73
69 70 1.112113 CTCGGCTGCCCTACTTCTTA 58.888 55.000 14.12 0.00 0.00 2.10
70 71 0.905337 ACTCGGCTGCCCTACTTCTT 60.905 55.000 14.12 0.00 0.00 2.52
71 72 1.305381 ACTCGGCTGCCCTACTTCT 60.305 57.895 14.12 0.00 0.00 2.85
72 73 1.142097 GACTCGGCTGCCCTACTTC 59.858 63.158 14.12 0.00 0.00 3.01
73 74 0.978146 ATGACTCGGCTGCCCTACTT 60.978 55.000 14.12 0.00 0.00 2.24
74 75 0.978146 AATGACTCGGCTGCCCTACT 60.978 55.000 14.12 0.00 0.00 2.57
75 76 0.107654 AAATGACTCGGCTGCCCTAC 60.108 55.000 14.12 3.08 0.00 3.18
76 77 0.618458 AAAATGACTCGGCTGCCCTA 59.382 50.000 14.12 0.04 0.00 3.53
77 78 0.251341 AAAAATGACTCGGCTGCCCT 60.251 50.000 14.12 0.00 0.00 5.19
78 79 0.171231 GAAAAATGACTCGGCTGCCC 59.829 55.000 14.12 0.00 0.00 5.36
79 80 0.881118 TGAAAAATGACTCGGCTGCC 59.119 50.000 9.11 9.11 0.00 4.85
80 81 2.226437 TCTTGAAAAATGACTCGGCTGC 59.774 45.455 0.00 0.00 0.00 5.25
81 82 4.488126 TTCTTGAAAAATGACTCGGCTG 57.512 40.909 0.00 0.00 0.00 4.85
82 83 5.281727 GTTTTCTTGAAAAATGACTCGGCT 58.718 37.500 9.71 0.00 0.00 5.52
83 84 4.444388 GGTTTTCTTGAAAAATGACTCGGC 59.556 41.667 9.71 0.00 0.00 5.54
84 85 4.675114 CGGTTTTCTTGAAAAATGACTCGG 59.325 41.667 9.71 0.00 0.00 4.63
85 86 4.675114 CCGGTTTTCTTGAAAAATGACTCG 59.325 41.667 9.71 7.58 0.00 4.18
86 87 5.458779 CACCGGTTTTCTTGAAAAATGACTC 59.541 40.000 2.97 0.00 0.00 3.36
87 88 5.105513 ACACCGGTTTTCTTGAAAAATGACT 60.106 36.000 2.97 0.00 0.00 3.41
88 89 5.106442 ACACCGGTTTTCTTGAAAAATGAC 58.894 37.500 2.97 0.00 0.00 3.06
89 90 5.331876 ACACCGGTTTTCTTGAAAAATGA 57.668 34.783 2.97 0.00 0.00 2.57
90 91 7.527084 TTTACACCGGTTTTCTTGAAAAATG 57.473 32.000 2.97 8.73 0.00 2.32
91 92 8.549338 TTTTTACACCGGTTTTCTTGAAAAAT 57.451 26.923 2.97 0.00 0.00 1.82
92 93 7.958053 TTTTTACACCGGTTTTCTTGAAAAA 57.042 28.000 2.97 5.67 0.00 1.94
116 117 8.736244 GGTGTATACAAAAAGTCCACATGTATT 58.264 33.333 7.25 0.00 38.03 1.89
117 118 8.107095 AGGTGTATACAAAAAGTCCACATGTAT 58.893 33.333 7.25 0.00 39.68 2.29
118 119 7.455058 AGGTGTATACAAAAAGTCCACATGTA 58.545 34.615 7.25 0.00 0.00 2.29
119 120 6.303839 AGGTGTATACAAAAAGTCCACATGT 58.696 36.000 7.25 0.00 0.00 3.21
120 121 6.817765 AGGTGTATACAAAAAGTCCACATG 57.182 37.500 7.25 0.00 0.00 3.21
121 122 7.001674 TCAAGGTGTATACAAAAAGTCCACAT 58.998 34.615 7.25 0.00 0.00 3.21
122 123 6.358178 TCAAGGTGTATACAAAAAGTCCACA 58.642 36.000 7.25 0.00 0.00 4.17
123 124 6.870971 TCAAGGTGTATACAAAAAGTCCAC 57.129 37.500 7.25 0.00 0.00 4.02
124 125 6.829298 TGTTCAAGGTGTATACAAAAAGTCCA 59.171 34.615 7.25 0.00 0.00 4.02
125 126 7.266922 TGTTCAAGGTGTATACAAAAAGTCC 57.733 36.000 7.25 3.44 0.00 3.85
126 127 9.744468 AAATGTTCAAGGTGTATACAAAAAGTC 57.256 29.630 7.25 0.00 0.00 3.01
129 130 9.239002 CGAAAATGTTCAAGGTGTATACAAAAA 57.761 29.630 7.25 0.00 32.89 1.94
130 131 8.407064 ACGAAAATGTTCAAGGTGTATACAAAA 58.593 29.630 7.25 0.00 32.89 2.44
131 132 7.932335 ACGAAAATGTTCAAGGTGTATACAAA 58.068 30.769 7.25 0.00 32.89 2.83
132 133 7.499321 ACGAAAATGTTCAAGGTGTATACAA 57.501 32.000 7.25 0.00 32.89 2.41
133 134 7.499321 AACGAAAATGTTCAAGGTGTATACA 57.501 32.000 0.08 0.08 32.89 2.29
134 135 9.321590 GTAAACGAAAATGTTCAAGGTGTATAC 57.678 33.333 0.00 0.00 32.89 1.47
135 136 9.053840 TGTAAACGAAAATGTTCAAGGTGTATA 57.946 29.630 0.00 0.00 32.89 1.47
136 137 7.932335 TGTAAACGAAAATGTTCAAGGTGTAT 58.068 30.769 0.00 0.00 32.89 2.29
137 138 7.317842 TGTAAACGAAAATGTTCAAGGTGTA 57.682 32.000 0.00 0.00 32.89 2.90
138 139 6.197364 TGTAAACGAAAATGTTCAAGGTGT 57.803 33.333 0.00 0.00 32.89 4.16
139 140 7.692908 AATGTAAACGAAAATGTTCAAGGTG 57.307 32.000 0.00 0.00 32.89 4.00
140 141 9.974980 ATAAATGTAAACGAAAATGTTCAAGGT 57.025 25.926 0.00 0.00 32.89 3.50
242 243 9.814899 TTCATCATGTGTTTAAAAATGTTCACT 57.185 25.926 0.00 0.00 0.00 3.41
243 244 9.848172 GTTCATCATGTGTTTAAAAATGTTCAC 57.152 29.630 0.00 0.00 0.00 3.18
244 245 9.591792 TGTTCATCATGTGTTTAAAAATGTTCA 57.408 25.926 0.00 0.00 0.00 3.18
255 256 8.945481 TCTTGAAAAATGTTCATCATGTGTTT 57.055 26.923 0.00 0.00 36.81 2.83
256 257 8.945481 TTCTTGAAAAATGTTCATCATGTGTT 57.055 26.923 0.00 0.00 36.81 3.32
257 258 8.984764 CATTCTTGAAAAATGTTCATCATGTGT 58.015 29.630 0.00 0.00 36.81 3.72
258 259 8.984764 ACATTCTTGAAAAATGTTCATCATGTG 58.015 29.630 0.00 0.00 43.08 3.21
294 295 2.336945 TGCCTGCATGTTCTATGGAG 57.663 50.000 0.00 0.00 37.25 3.86
298 299 7.546667 CACTTTAAAAATGCCTGCATGTTCTAT 59.453 33.333 7.94 0.00 33.11 1.98
301 302 5.466393 ACACTTTAAAAATGCCTGCATGTTC 59.534 36.000 7.94 0.00 33.11 3.18
457 459 3.456277 GGTGAGATGGGATCTTGGTTACT 59.544 47.826 0.00 0.00 40.38 2.24
473 475 3.170717 ACTTGATACTTTCCCGGTGAGA 58.829 45.455 0.00 0.00 0.00 3.27
480 482 5.454897 GGATGGGAGTACTTGATACTTTCCC 60.455 48.000 0.00 0.00 44.64 3.97
482 484 6.487299 AGGATGGGAGTACTTGATACTTTC 57.513 41.667 0.00 0.00 44.64 2.62
483 485 6.353082 CCAAGGATGGGAGTACTTGATACTTT 60.353 42.308 0.00 0.00 41.17 2.66
484 486 5.131142 CCAAGGATGGGAGTACTTGATACTT 59.869 44.000 0.00 0.00 41.17 2.24
486 488 4.962155 CCAAGGATGGGAGTACTTGATAC 58.038 47.826 0.00 0.00 43.51 2.24
500 502 0.839946 CCAGGAGTACCCCAAGGATG 59.160 60.000 0.00 0.00 36.73 3.51
501 503 0.421904 ACCAGGAGTACCCCAAGGAT 59.578 55.000 11.17 0.00 36.73 3.24
502 504 0.546747 CACCAGGAGTACCCCAAGGA 60.547 60.000 11.17 0.00 36.73 3.36
503 505 1.991230 CACCAGGAGTACCCCAAGG 59.009 63.158 0.00 0.00 36.73 3.61
504 506 1.201429 AGCACCAGGAGTACCCCAAG 61.201 60.000 0.00 0.00 36.73 3.61
505 507 1.151899 AGCACCAGGAGTACCCCAA 60.152 57.895 0.00 0.00 36.73 4.12
506 508 1.612442 GAGCACCAGGAGTACCCCA 60.612 63.158 0.00 0.00 36.73 4.96
507 509 2.368011 GGAGCACCAGGAGTACCCC 61.368 68.421 0.00 0.00 36.73 4.95
508 510 1.612442 TGGAGCACCAGGAGTACCC 60.612 63.158 0.00 0.00 41.77 3.69
509 511 4.130255 TGGAGCACCAGGAGTACC 57.870 61.111 0.00 0.00 41.77 3.34
587 589 5.281314 AGGGATAGTAGTCACATTCCTTGT 58.719 41.667 0.00 0.00 39.91 3.16
588 590 5.878406 AGGGATAGTAGTCACATTCCTTG 57.122 43.478 0.00 0.00 31.76 3.61
589 591 7.989947 TTTAGGGATAGTAGTCACATTCCTT 57.010 36.000 0.00 0.00 31.76 3.36
590 592 7.989947 TTTTAGGGATAGTAGTCACATTCCT 57.010 36.000 0.00 0.00 31.76 3.36
591 593 9.628500 AATTTTTAGGGATAGTAGTCACATTCC 57.372 33.333 0.00 0.00 0.00 3.01
595 597 9.667107 CTGAAATTTTTAGGGATAGTAGTCACA 57.333 33.333 0.00 0.00 0.00 3.58
596 598 9.110502 CCTGAAATTTTTAGGGATAGTAGTCAC 57.889 37.037 11.24 0.00 0.00 3.67
597 599 8.832735 ACCTGAAATTTTTAGGGATAGTAGTCA 58.167 33.333 20.45 0.00 35.89 3.41
598 600 9.327628 GACCTGAAATTTTTAGGGATAGTAGTC 57.672 37.037 20.45 6.19 35.89 2.59
599 601 8.272889 GGACCTGAAATTTTTAGGGATAGTAGT 58.727 37.037 20.45 1.15 35.89 2.73
600 602 8.272173 TGGACCTGAAATTTTTAGGGATAGTAG 58.728 37.037 20.45 0.00 35.89 2.57
601 603 8.165267 TGGACCTGAAATTTTTAGGGATAGTA 57.835 34.615 20.45 2.60 35.89 1.82
602 604 7.039722 TGGACCTGAAATTTTTAGGGATAGT 57.960 36.000 20.45 3.03 35.89 2.12
603 605 7.954666 TTGGACCTGAAATTTTTAGGGATAG 57.045 36.000 20.45 0.24 35.89 2.08
604 606 7.953493 AGTTTGGACCTGAAATTTTTAGGGATA 59.047 33.333 20.45 6.57 35.89 2.59
605 607 6.787458 AGTTTGGACCTGAAATTTTTAGGGAT 59.213 34.615 20.45 4.29 35.89 3.85
606 608 6.140377 AGTTTGGACCTGAAATTTTTAGGGA 58.860 36.000 20.45 5.13 35.89 4.20
607 609 6.419484 AGTTTGGACCTGAAATTTTTAGGG 57.581 37.500 20.45 8.91 35.89 3.53
608 610 7.496747 TCAAGTTTGGACCTGAAATTTTTAGG 58.503 34.615 16.23 16.23 37.61 2.69
609 611 8.940768 TTCAAGTTTGGACCTGAAATTTTTAG 57.059 30.769 0.00 0.00 34.22 1.85
610 612 9.157104 GTTTCAAGTTTGGACCTGAAATTTTTA 57.843 29.630 8.58 0.00 43.98 1.52
611 613 7.148490 CGTTTCAAGTTTGGACCTGAAATTTTT 60.148 33.333 8.58 0.00 43.98 1.94
612 614 6.312672 CGTTTCAAGTTTGGACCTGAAATTTT 59.687 34.615 8.58 0.00 43.98 1.82
613 615 5.810074 CGTTTCAAGTTTGGACCTGAAATTT 59.190 36.000 8.58 0.00 43.98 1.82
614 616 5.348164 CGTTTCAAGTTTGGACCTGAAATT 58.652 37.500 8.58 0.00 43.98 1.82
615 617 4.736464 GCGTTTCAAGTTTGGACCTGAAAT 60.736 41.667 8.58 0.00 43.98 2.17
616 618 3.428316 GCGTTTCAAGTTTGGACCTGAAA 60.428 43.478 2.55 2.55 41.53 2.69
617 619 2.098443 GCGTTTCAAGTTTGGACCTGAA 59.902 45.455 0.00 0.00 35.09 3.02
618 620 1.673920 GCGTTTCAAGTTTGGACCTGA 59.326 47.619 0.00 0.00 0.00 3.86
619 621 1.403679 TGCGTTTCAAGTTTGGACCTG 59.596 47.619 0.00 0.00 0.00 4.00
620 622 1.404035 GTGCGTTTCAAGTTTGGACCT 59.596 47.619 0.00 0.00 0.00 3.85
621 623 1.133407 TGTGCGTTTCAAGTTTGGACC 59.867 47.619 0.00 0.00 0.00 4.46
622 624 2.553079 TGTGCGTTTCAAGTTTGGAC 57.447 45.000 0.00 0.00 0.00 4.02
623 625 3.129462 TCAATGTGCGTTTCAAGTTTGGA 59.871 39.130 0.00 0.00 0.00 3.53
624 626 3.443037 TCAATGTGCGTTTCAAGTTTGG 58.557 40.909 0.00 0.00 0.00 3.28
625 627 4.350346 TCTCAATGTGCGTTTCAAGTTTG 58.650 39.130 0.00 0.00 0.00 2.93
626 628 4.630894 TCTCAATGTGCGTTTCAAGTTT 57.369 36.364 0.00 0.00 0.00 2.66
627 629 4.630894 TTCTCAATGTGCGTTTCAAGTT 57.369 36.364 0.00 0.00 0.00 2.66
628 630 4.630894 TTTCTCAATGTGCGTTTCAAGT 57.369 36.364 0.00 0.00 0.00 3.16
629 631 5.947503 TTTTTCTCAATGTGCGTTTCAAG 57.052 34.783 0.00 0.00 0.00 3.02
668 670 8.882415 TTGTCTTTTTCTCTTACACTATTCGT 57.118 30.769 0.00 0.00 0.00 3.85
671 673 9.952188 GCTTTTGTCTTTTTCTCTTACACTATT 57.048 29.630 0.00 0.00 0.00 1.73
672 674 9.120538 TGCTTTTGTCTTTTTCTCTTACACTAT 57.879 29.630 0.00 0.00 0.00 2.12
673 675 8.500753 TGCTTTTGTCTTTTTCTCTTACACTA 57.499 30.769 0.00 0.00 0.00 2.74
674 676 7.391148 TGCTTTTGTCTTTTTCTCTTACACT 57.609 32.000 0.00 0.00 0.00 3.55
675 677 7.540745 TGTTGCTTTTGTCTTTTTCTCTTACAC 59.459 33.333 0.00 0.00 0.00 2.90
676 678 7.598278 TGTTGCTTTTGTCTTTTTCTCTTACA 58.402 30.769 0.00 0.00 0.00 2.41
677 679 8.634475 ATGTTGCTTTTGTCTTTTTCTCTTAC 57.366 30.769 0.00 0.00 0.00 2.34
678 680 9.086336 CAATGTTGCTTTTGTCTTTTTCTCTTA 57.914 29.630 0.00 0.00 0.00 2.10
679 681 7.818930 TCAATGTTGCTTTTGTCTTTTTCTCTT 59.181 29.630 0.00 0.00 0.00 2.85
680 682 7.276438 GTCAATGTTGCTTTTGTCTTTTTCTCT 59.724 33.333 0.00 0.00 0.00 3.10
681 683 7.063308 TGTCAATGTTGCTTTTGTCTTTTTCTC 59.937 33.333 0.00 0.00 0.00 2.87
682 684 6.873076 TGTCAATGTTGCTTTTGTCTTTTTCT 59.127 30.769 0.00 0.00 0.00 2.52
683 685 6.955407 GTGTCAATGTTGCTTTTGTCTTTTTC 59.045 34.615 0.00 0.00 0.00 2.29
684 686 6.650390 AGTGTCAATGTTGCTTTTGTCTTTTT 59.350 30.769 0.00 0.00 0.00 1.94
685 687 6.165577 AGTGTCAATGTTGCTTTTGTCTTTT 58.834 32.000 0.00 0.00 0.00 2.27
686 688 5.723295 AGTGTCAATGTTGCTTTTGTCTTT 58.277 33.333 0.00 0.00 0.00 2.52
687 689 5.329035 AGTGTCAATGTTGCTTTTGTCTT 57.671 34.783 0.00 0.00 0.00 3.01
688 690 4.989279 AGTGTCAATGTTGCTTTTGTCT 57.011 36.364 0.00 0.00 0.00 3.41
689 691 6.917477 TGAATAGTGTCAATGTTGCTTTTGTC 59.083 34.615 0.00 0.00 0.00 3.18
690 692 6.697019 GTGAATAGTGTCAATGTTGCTTTTGT 59.303 34.615 0.00 0.00 0.00 2.83
691 693 6.696583 TGTGAATAGTGTCAATGTTGCTTTTG 59.303 34.615 0.00 0.00 0.00 2.44
692 694 6.804677 TGTGAATAGTGTCAATGTTGCTTTT 58.195 32.000 0.00 0.00 0.00 2.27
693 695 6.389830 TGTGAATAGTGTCAATGTTGCTTT 57.610 33.333 0.00 0.00 0.00 3.51
694 696 6.432162 AGATGTGAATAGTGTCAATGTTGCTT 59.568 34.615 0.00 0.00 0.00 3.91
695 697 5.942236 AGATGTGAATAGTGTCAATGTTGCT 59.058 36.000 0.00 0.00 0.00 3.91
696 698 6.025896 CAGATGTGAATAGTGTCAATGTTGC 58.974 40.000 0.00 0.00 0.00 4.17
697 699 6.372381 TCCAGATGTGAATAGTGTCAATGTTG 59.628 38.462 0.00 0.00 0.00 3.33
698 700 6.475504 TCCAGATGTGAATAGTGTCAATGTT 58.524 36.000 0.00 0.00 0.00 2.71
699 701 6.053632 TCCAGATGTGAATAGTGTCAATGT 57.946 37.500 0.00 0.00 0.00 2.71
700 702 6.990341 TTCCAGATGTGAATAGTGTCAATG 57.010 37.500 0.00 0.00 0.00 2.82
701 703 7.830697 TGAATTCCAGATGTGAATAGTGTCAAT 59.169 33.333 2.27 0.00 32.31 2.57
702 704 7.119699 GTGAATTCCAGATGTGAATAGTGTCAA 59.880 37.037 2.27 0.00 32.31 3.18
703 705 6.595326 GTGAATTCCAGATGTGAATAGTGTCA 59.405 38.462 2.27 0.00 32.31 3.58
704 706 6.820656 AGTGAATTCCAGATGTGAATAGTGTC 59.179 38.462 2.27 0.00 32.31 3.67
705 707 6.715280 AGTGAATTCCAGATGTGAATAGTGT 58.285 36.000 2.27 0.00 32.31 3.55
706 708 7.621428 AAGTGAATTCCAGATGTGAATAGTG 57.379 36.000 2.27 0.00 32.31 2.74
707 709 8.641498 AAAAGTGAATTCCAGATGTGAATAGT 57.359 30.769 2.27 0.00 32.31 2.12
731 733 9.360093 ACTCGAAATACACATTGAAAAACAAAA 57.640 25.926 0.00 0.00 42.03 2.44
732 734 8.918961 ACTCGAAATACACATTGAAAAACAAA 57.081 26.923 0.00 0.00 42.03 2.83
733 735 8.918961 AACTCGAAATACACATTGAAAAACAA 57.081 26.923 0.00 0.00 42.95 2.83
734 736 8.802856 CAAACTCGAAATACACATTGAAAAACA 58.197 29.630 0.00 0.00 0.00 2.83
735 737 8.265998 CCAAACTCGAAATACACATTGAAAAAC 58.734 33.333 0.00 0.00 0.00 2.43
736 738 8.191446 TCCAAACTCGAAATACACATTGAAAAA 58.809 29.630 0.00 0.00 0.00 1.94
737 739 7.708051 TCCAAACTCGAAATACACATTGAAAA 58.292 30.769 0.00 0.00 0.00 2.29
738 740 7.265647 TCCAAACTCGAAATACACATTGAAA 57.734 32.000 0.00 0.00 0.00 2.69
739 741 6.869315 TCCAAACTCGAAATACACATTGAA 57.131 33.333 0.00 0.00 0.00 2.69
740 742 6.878923 AGATCCAAACTCGAAATACACATTGA 59.121 34.615 0.00 0.00 0.00 2.57
741 743 6.963242 CAGATCCAAACTCGAAATACACATTG 59.037 38.462 0.00 0.00 0.00 2.82
742 744 6.878923 TCAGATCCAAACTCGAAATACACATT 59.121 34.615 0.00 0.00 0.00 2.71
743 745 6.406370 TCAGATCCAAACTCGAAATACACAT 58.594 36.000 0.00 0.00 0.00 3.21
744 746 5.789521 TCAGATCCAAACTCGAAATACACA 58.210 37.500 0.00 0.00 0.00 3.72
745 747 6.721571 TTCAGATCCAAACTCGAAATACAC 57.278 37.500 0.00 0.00 0.00 2.90
746 748 7.921786 ATTTCAGATCCAAACTCGAAATACA 57.078 32.000 0.00 0.00 32.77 2.29
747 749 9.626045 AAAATTTCAGATCCAAACTCGAAATAC 57.374 29.630 0.00 0.00 33.24 1.89
750 752 9.677567 CTAAAAATTTCAGATCCAAACTCGAAA 57.322 29.630 0.00 0.00 0.00 3.46
751 753 9.062524 TCTAAAAATTTCAGATCCAAACTCGAA 57.937 29.630 0.00 0.00 0.00 3.71
752 754 8.615878 TCTAAAAATTTCAGATCCAAACTCGA 57.384 30.769 0.00 0.00 0.00 4.04
753 755 9.334693 CTTCTAAAAATTTCAGATCCAAACTCG 57.665 33.333 0.00 0.00 0.00 4.18
772 774 9.391006 ACAAAGAATGTGACTACAACTTCTAAA 57.609 29.630 0.00 0.00 41.93 1.85
773 775 8.958119 ACAAAGAATGTGACTACAACTTCTAA 57.042 30.769 0.00 0.00 41.93 2.10
788 790 8.721019 AAAATGTCAATGTTCACAAAGAATGT 57.279 26.923 0.00 0.00 45.34 2.71
849 851 5.759506 TCGACTGTGCTCCAAATTAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
850 852 5.957842 ATCGACTGTGCTCCAAATTAAAA 57.042 34.783 0.00 0.00 0.00 1.52
851 853 6.038161 CCATATCGACTGTGCTCCAAATTAAA 59.962 38.462 0.00 0.00 0.00 1.52
852 854 5.527214 CCATATCGACTGTGCTCCAAATTAA 59.473 40.000 0.00 0.00 0.00 1.40
853 855 5.056480 CCATATCGACTGTGCTCCAAATTA 58.944 41.667 0.00 0.00 0.00 1.40
854 856 3.879295 CCATATCGACTGTGCTCCAAATT 59.121 43.478 0.00 0.00 0.00 1.82
855 857 3.470709 CCATATCGACTGTGCTCCAAAT 58.529 45.455 0.00 0.00 0.00 2.32
856 858 2.905075 CCATATCGACTGTGCTCCAAA 58.095 47.619 0.00 0.00 0.00 3.28
857 859 1.473257 GCCATATCGACTGTGCTCCAA 60.473 52.381 0.00 0.00 0.00 3.53
858 860 0.104855 GCCATATCGACTGTGCTCCA 59.895 55.000 0.00 0.00 0.00 3.86
859 861 0.390860 AGCCATATCGACTGTGCTCC 59.609 55.000 0.00 0.00 0.00 4.70
860 862 1.604185 GGAGCCATATCGACTGTGCTC 60.604 57.143 20.28 20.28 43.34 4.26
861 863 0.390860 GGAGCCATATCGACTGTGCT 59.609 55.000 10.52 10.52 0.00 4.40
862 864 0.390860 AGGAGCCATATCGACTGTGC 59.609 55.000 0.00 0.00 0.00 4.57
863 865 2.477825 CAAGGAGCCATATCGACTGTG 58.522 52.381 0.00 0.00 0.00 3.66
864 866 1.202580 GCAAGGAGCCATATCGACTGT 60.203 52.381 0.00 0.00 37.23 3.55
865 867 1.506493 GCAAGGAGCCATATCGACTG 58.494 55.000 0.00 0.00 37.23 3.51
866 868 0.032678 CGCAAGGAGCCATATCGACT 59.967 55.000 0.00 0.00 41.38 4.18
867 869 0.032130 TCGCAAGGAGCCATATCGAC 59.968 55.000 0.00 0.00 41.38 4.20
868 870 0.032130 GTCGCAAGGAGCCATATCGA 59.968 55.000 0.00 0.00 41.38 3.59
869 871 0.249447 TGTCGCAAGGAGCCATATCG 60.249 55.000 0.00 0.00 41.38 2.92
870 872 1.202580 ACTGTCGCAAGGAGCCATATC 60.203 52.381 0.00 0.00 41.38 1.63
871 873 0.833287 ACTGTCGCAAGGAGCCATAT 59.167 50.000 0.00 0.00 41.38 1.78
872 874 0.175760 GACTGTCGCAAGGAGCCATA 59.824 55.000 0.00 0.00 41.38 2.74
873 875 1.078848 GACTGTCGCAAGGAGCCAT 60.079 57.895 0.00 0.00 41.38 4.40
888 890 2.897972 GGGGTGGCGTATTCGACT 59.102 61.111 0.00 0.00 46.49 4.18
889 891 2.584143 CGGGGTGGCGTATTCGAC 60.584 66.667 0.00 0.00 46.54 4.20
890 892 4.517815 GCGGGGTGGCGTATTCGA 62.518 66.667 0.00 0.00 39.71 3.71
907 910 4.162690 CCTCGGGCTTCTTCGGGG 62.163 72.222 0.00 0.00 40.87 5.73
938 941 0.106868 TCCCTATCCTCTGCGTTCGA 60.107 55.000 0.00 0.00 0.00 3.71
1206 1237 3.071602 GCCAGAGGGACAGCATAATAAGA 59.928 47.826 0.00 0.00 35.59 2.10
1207 1238 3.406764 GCCAGAGGGACAGCATAATAAG 58.593 50.000 0.00 0.00 35.59 1.73
1328 1372 0.037590 TTTCCTAACAGCACCGGCAT 59.962 50.000 0.00 0.00 44.61 4.40
1436 1488 6.527023 CAGTGGTACAAGTTACTTATGAGTCG 59.473 42.308 0.00 0.00 44.16 4.18
1468 1682 1.549170 CGCCCAAAGGTACTCAGTACT 59.451 52.381 14.75 0.00 38.49 2.73
1471 1685 1.276622 ATCGCCCAAAGGTACTCAGT 58.723 50.000 0.00 0.00 38.49 3.41
1472 1686 3.536956 TTATCGCCCAAAGGTACTCAG 57.463 47.619 0.00 0.00 38.49 3.35
1473 1687 3.262405 AGTTTATCGCCCAAAGGTACTCA 59.738 43.478 0.00 0.00 38.49 3.41
1474 1688 3.870274 AGTTTATCGCCCAAAGGTACTC 58.130 45.455 0.00 0.00 38.49 2.59
1476 1690 5.362263 TCATAGTTTATCGCCCAAAGGTAC 58.638 41.667 0.00 0.00 34.57 3.34
1477 1691 5.617528 TCATAGTTTATCGCCCAAAGGTA 57.382 39.130 0.00 0.00 34.57 3.08
1512 1733 2.109126 GCTCATGAACTGGACCGGC 61.109 63.158 0.00 0.00 0.00 6.13
1529 1750 5.935789 TCACTACCAACTTAACATTACCTGC 59.064 40.000 0.00 0.00 0.00 4.85
1539 1760 8.767085 CGAGTTTATGTTTCACTACCAACTTAA 58.233 33.333 0.00 0.00 0.00 1.85
1580 1803 4.899352 AGCCAACTAGTCTCATCAACTT 57.101 40.909 0.00 0.00 0.00 2.66
1599 1822 1.176527 TTCACCAAGCATAGCCAAGC 58.823 50.000 0.00 0.00 0.00 4.01
1600 1823 3.940209 TTTTCACCAAGCATAGCCAAG 57.060 42.857 0.00 0.00 0.00 3.61
1605 1828 7.601856 TCAAGGTAAATTTTCACCAAGCATAG 58.398 34.615 11.78 0.00 37.28 2.23
1648 1871 8.806429 ATATTGAACATTGGACACACTCAATA 57.194 30.769 0.00 0.00 32.92 1.90
1657 1888 7.192913 GCACGAAATATATTGAACATTGGACA 58.807 34.615 0.00 0.00 0.00 4.02
1668 1899 6.558771 TTCATCAGGGCACGAAATATATTG 57.441 37.500 0.00 0.00 0.00 1.90
1705 1937 2.028112 AGGCGCTCTGTAAATTGTGAGA 60.028 45.455 7.64 0.00 0.00 3.27
1708 1940 1.466360 GCAGGCGCTCTGTAAATTGTG 60.466 52.381 21.68 1.22 45.08 3.33
1792 2024 4.487948 TGGAGTAGTTACGTGGAAAATCG 58.512 43.478 0.00 0.00 0.00 3.34
1867 2099 2.765699 AGCTTCCTTCATCCTCTGTCTC 59.234 50.000 0.00 0.00 0.00 3.36
1986 2218 3.120408 CCTCTTCAAGTTGTTGATCAGCG 60.120 47.826 5.02 0.00 42.41 5.18
2066 2298 7.436376 CGTGATTTCAAGAGCATACTTATCAGA 59.564 37.037 0.00 0.00 29.13 3.27
2200 2432 5.542635 TGTGAGGTCAGGTACTTTATCTGTT 59.457 40.000 0.00 0.00 38.11 3.16
2212 2444 1.272490 CACGTGTATGTGAGGTCAGGT 59.728 52.381 7.58 0.00 42.55 4.00
2213 2445 1.272490 ACACGTGTATGTGAGGTCAGG 59.728 52.381 21.98 0.00 42.55 3.86
2214 2446 2.724977 ACACGTGTATGTGAGGTCAG 57.275 50.000 21.98 0.00 42.55 3.51
2215 2447 2.288579 GGAACACGTGTATGTGAGGTCA 60.289 50.000 23.69 0.00 42.55 4.02
2216 2448 2.288579 TGGAACACGTGTATGTGAGGTC 60.289 50.000 23.69 12.77 42.55 3.85
2312 2544 5.896678 GTGCATCTAGATACCTCCATCCTAT 59.103 44.000 4.54 0.00 0.00 2.57
2412 2644 4.180817 CTGGATTCAGTAATGTACGCACA 58.819 43.478 0.00 0.00 36.30 4.57
2443 2675 5.046376 AGGCTTTGATAAAACCAAATGGAGG 60.046 40.000 6.42 0.00 38.94 4.30
2601 2833 6.197276 GCAACACAGCATTATGACTTATGAG 58.803 40.000 0.00 0.00 0.00 2.90
2850 3084 3.119101 ACAGATCCAACGTGTATCTCACC 60.119 47.826 4.96 0.00 43.51 4.02
3179 3413 3.129462 GCTCCTTAAATTTGTCAGGCTCC 59.871 47.826 0.00 0.00 0.00 4.70
3670 3904 4.732923 CACAACGTAAACACCACATTTCTG 59.267 41.667 0.00 0.00 0.00 3.02
3671 3905 4.396790 ACACAACGTAAACACCACATTTCT 59.603 37.500 0.00 0.00 0.00 2.52
3804 4040 5.437289 TTCGCATCTGAAACAGACAAAAT 57.563 34.783 3.54 0.00 43.63 1.82
3811 4047 4.408993 TGTTGATTCGCATCTGAAACAG 57.591 40.909 0.00 0.00 33.10 3.16
3823 4059 7.530010 AGAAACATCTGGTAAATGTTGATTCG 58.470 34.615 2.53 0.00 44.44 3.34
3872 4115 2.443887 TCGTTGTAAGTAGTGGCCAC 57.556 50.000 29.22 29.22 0.00 5.01
3873 4116 2.354303 CCATCGTTGTAAGTAGTGGCCA 60.354 50.000 0.00 0.00 0.00 5.36
3874 4117 2.093869 TCCATCGTTGTAAGTAGTGGCC 60.094 50.000 0.00 0.00 0.00 5.36
3875 4118 3.241067 TCCATCGTTGTAAGTAGTGGC 57.759 47.619 0.00 0.00 0.00 5.01
3876 4119 5.064707 CCAATTCCATCGTTGTAAGTAGTGG 59.935 44.000 0.00 0.00 0.00 4.00
3877 4120 5.064707 CCCAATTCCATCGTTGTAAGTAGTG 59.935 44.000 0.00 0.00 0.00 2.74
3878 4121 5.183228 CCCAATTCCATCGTTGTAAGTAGT 58.817 41.667 0.00 0.00 0.00 2.73
3957 4201 5.036737 CACTGGTTCTGAATTTGACACAAC 58.963 41.667 0.00 0.00 0.00 3.32
4095 4339 3.057526 ACCATTGAAAGGCTTAAAGCGAC 60.058 43.478 0.00 0.00 43.62 5.19
4111 4355 1.927174 GTACTACAGCGCTCACCATTG 59.073 52.381 7.13 0.00 0.00 2.82
4302 4547 9.726438 ATCTAAGAAAGTGTTTACATAGCTTGT 57.274 29.630 0.00 0.00 42.62 3.16
4539 4785 4.279671 AGCAAAAACAAATACCGATGACCA 59.720 37.500 0.00 0.00 0.00 4.02
4541 4787 7.044966 CGATAAGCAAAAACAAATACCGATGAC 60.045 37.037 0.00 0.00 0.00 3.06
4542 4788 6.964370 CGATAAGCAAAAACAAATACCGATGA 59.036 34.615 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.