Multiple sequence alignment - TraesCS6D01G275500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G275500 chr6D 100.000 2062 0 0 1 2062 384299860 384301921 0.000000e+00 3808.0
1 TraesCS6D01G275500 chr6D 100.000 185 0 0 2347 2531 384302206 384302390 2.410000e-90 342.0
2 TraesCS6D01G275500 chr6D 85.561 187 24 2 2347 2531 21816177 21816362 2.570000e-45 193.0
3 TraesCS6D01G275500 chr6B 91.241 1176 62 20 697 1857 574521022 574522171 0.000000e+00 1563.0
4 TraesCS6D01G275500 chr6B 90.535 486 45 1 1 485 539001175 539000690 2.120000e-180 641.0
5 TraesCS6D01G275500 chr6B 91.566 83 4 3 616 696 574520908 574520989 7.400000e-21 111.0
6 TraesCS6D01G275500 chr6A 92.596 959 43 13 727 1672 528948613 528949556 0.000000e+00 1352.0
7 TraesCS6D01G275500 chr6A 80.503 159 16 11 1623 1770 528949562 528949716 9.570000e-20 108.0
8 TraesCS6D01G275500 chr7D 90.967 631 44 8 1 619 526238950 526238321 0.000000e+00 837.0
9 TraesCS6D01G275500 chr7A 89.937 636 47 10 1 619 145454998 145455633 0.000000e+00 804.0
10 TraesCS6D01G275500 chr2D 89.860 641 42 12 1 619 562914469 562913830 0.000000e+00 802.0
11 TraesCS6D01G275500 chr7B 89.223 631 55 7 1 619 570061035 570061664 0.000000e+00 776.0
12 TraesCS6D01G275500 chr7B 86.735 490 42 8 1 489 104970795 104970328 8.020000e-145 523.0
13 TraesCS6D01G275500 chr5D 88.025 643 51 10 1 619 355733699 355734339 0.000000e+00 737.0
14 TraesCS6D01G275500 chr3A 86.656 637 64 15 1 619 708898426 708899059 0.000000e+00 686.0
15 TraesCS6D01G275500 chr4A 87.887 388 41 6 232 619 514235336 514234955 3.840000e-123 451.0
16 TraesCS6D01G275500 chr4A 88.511 235 26 1 1 234 577197613 577197379 1.480000e-72 283.0
17 TraesCS6D01G275500 chr4A 100.000 30 0 0 1789 1818 706427211 706427240 3.520000e-04 56.5
18 TraesCS6D01G275500 chr2A 88.172 93 9 1 2347 2437 676350752 676350660 2.660000e-20 110.0
19 TraesCS6D01G275500 chr3D 92.727 55 3 1 2347 2400 533927541 533927595 7.510000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G275500 chr6D 384299860 384302390 2530 False 2075 3808 100.0000 1 2531 2 chr6D.!!$F2 2530
1 TraesCS6D01G275500 chr6B 574520908 574522171 1263 False 837 1563 91.4035 616 1857 2 chr6B.!!$F1 1241
2 TraesCS6D01G275500 chr6A 528948613 528949716 1103 False 730 1352 86.5495 727 1770 2 chr6A.!!$F1 1043
3 TraesCS6D01G275500 chr7D 526238321 526238950 629 True 837 837 90.9670 1 619 1 chr7D.!!$R1 618
4 TraesCS6D01G275500 chr7A 145454998 145455633 635 False 804 804 89.9370 1 619 1 chr7A.!!$F1 618
5 TraesCS6D01G275500 chr2D 562913830 562914469 639 True 802 802 89.8600 1 619 1 chr2D.!!$R1 618
6 TraesCS6D01G275500 chr7B 570061035 570061664 629 False 776 776 89.2230 1 619 1 chr7B.!!$F1 618
7 TraesCS6D01G275500 chr5D 355733699 355734339 640 False 737 737 88.0250 1 619 1 chr5D.!!$F1 618
8 TraesCS6D01G275500 chr3A 708898426 708899059 633 False 686 686 86.6560 1 619 1 chr3A.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 568 0.65784 GTGTGGAGTGTTGTGACAGC 59.342 55.0 0.0 0.0 36.2 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2116 0.034574 ACAATTGTGATGCCCCGCTA 60.035 50.0 11.07 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 3.003173 CCCTCCTTGGAGGCGTCA 61.003 66.667 26.16 0.00 40.95 4.35
116 118 0.892755 ACCGTACTCGCTTCATTCCA 59.107 50.000 0.00 0.00 35.54 3.53
235 243 1.534235 AGACACGGCTTGGAGGTCT 60.534 57.895 0.00 0.00 34.19 3.85
260 268 4.436998 CTTTCCTCCGGCGCTCGT 62.437 66.667 7.64 0.00 37.11 4.18
310 322 3.854459 GCACACCTTCGCTAGCGC 61.854 66.667 31.82 11.71 39.59 5.92
323 335 1.335964 GCTAGCGCGTCCAAGATGATA 60.336 52.381 8.43 0.00 0.00 2.15
393 405 1.595794 GCGTCAACGAGGAAAGTCAAA 59.404 47.619 6.75 0.00 43.02 2.69
426 438 3.630298 TTTGGAGGCGGCGGCATTA 62.630 57.895 34.87 17.21 42.47 1.90
444 456 1.812686 TAGTTGAGACGCGGCCTTGT 61.813 55.000 9.25 0.00 0.00 3.16
464 476 2.866762 GTTGCTCAGTTTAGGATAGGCG 59.133 50.000 0.00 0.00 0.00 5.52
481 493 1.923864 GGCGTTTCTTGTTGTTGTTGG 59.076 47.619 0.00 0.00 0.00 3.77
530 568 0.657840 GTGTGGAGTGTTGTGACAGC 59.342 55.000 0.00 0.00 36.20 4.40
535 573 1.286501 GAGTGTTGTGACAGCGTTGA 58.713 50.000 6.16 0.00 36.20 3.18
537 575 1.006832 GTGTTGTGACAGCGTTGAGT 58.993 50.000 6.16 0.00 36.20 3.41
539 577 1.006832 GTTGTGACAGCGTTGAGTGT 58.993 50.000 6.16 0.00 0.00 3.55
571 609 7.639113 TGTCATTTTCTTGTACTCAAACCTT 57.361 32.000 0.00 0.00 32.87 3.50
573 611 8.527810 TGTCATTTTCTTGTACTCAAACCTTTT 58.472 29.630 0.00 0.00 32.87 2.27
588 626 8.706322 TCAAACCTTTTCCTTCTATAAAGCTT 57.294 30.769 0.00 0.00 0.00 3.74
611 649 5.018539 AGGTACGCATTTTGCATACTCTA 57.981 39.130 5.80 0.00 45.36 2.43
674 714 3.594568 CCGCTGTGTGGCATCAAT 58.405 55.556 0.00 0.00 0.00 2.57
692 732 2.126850 GCCGCGCAGAGAAAAACC 60.127 61.111 8.75 0.00 0.00 3.27
696 736 1.081175 GCGCAGAGAAAAACCAGCC 60.081 57.895 0.30 0.00 0.00 4.85
697 737 1.795170 GCGCAGAGAAAAACCAGCCA 61.795 55.000 0.30 0.00 0.00 4.75
698 738 0.667993 CGCAGAGAAAAACCAGCCAA 59.332 50.000 0.00 0.00 0.00 4.52
721 793 2.202756 GACGATCACGGGTGAGCC 60.203 66.667 11.07 0.00 42.54 4.70
941 1022 1.065199 TCCATTGCTCTGCCCTAAGTG 60.065 52.381 0.00 0.00 0.00 3.16
979 1060 1.939934 TCACTTTCACTTGCGACTTGG 59.060 47.619 0.00 0.00 0.00 3.61
1274 1361 2.043852 TTGTGCCCCAACCAACGT 60.044 55.556 0.00 0.00 0.00 3.99
1282 1369 0.040781 CCCAACCAACGTAAAGTGCG 60.041 55.000 0.00 0.00 0.00 5.34
1283 1370 0.658897 CCAACCAACGTAAAGTGCGT 59.341 50.000 0.00 0.00 45.07 5.24
1284 1371 1.333435 CCAACCAACGTAAAGTGCGTC 60.333 52.381 0.00 0.00 42.10 5.19
1308 1395 2.027625 CGTGAAGAAGTGCGGGGAC 61.028 63.158 0.00 0.00 0.00 4.46
1347 1434 1.490693 CGCAGTGCCGTATGACCATC 61.491 60.000 10.11 0.00 0.00 3.51
1559 1646 4.124238 CTGTAGCTAGCTAGTCGAGTTCT 58.876 47.826 24.78 10.70 0.00 3.01
1602 1689 2.954611 GCTCCACGCACTTTTCCC 59.045 61.111 0.00 0.00 38.92 3.97
1606 1693 1.007387 CCACGCACTTTTCCCTTGC 60.007 57.895 0.00 0.00 0.00 4.01
1608 1695 0.385390 CACGCACTTTTCCCTTGCTT 59.615 50.000 0.00 0.00 33.90 3.91
1623 1710 4.501915 CCCTTGCTTGTTTCATGTCATGTT 60.502 41.667 12.54 0.00 0.00 2.71
1641 1731 0.662077 TTGTCGTGTCGGTCATCGTG 60.662 55.000 0.00 0.00 40.32 4.35
1664 1754 6.426025 GTGGTTGTTTTAGATTTCGTCTAGGT 59.574 38.462 0.00 0.00 40.42 3.08
1682 1837 0.788391 GTTTGTCATGTCGGTCGTCC 59.212 55.000 0.00 0.00 0.00 4.79
1686 1841 1.080093 TCATGTCGGTCGTCCTTGC 60.080 57.895 0.00 0.00 0.00 4.01
1696 1854 2.223377 GGTCGTCCTTGCTGTTTTAGTG 59.777 50.000 0.00 0.00 0.00 2.74
1705 1863 4.325028 TGCTGTTTTAGTGGTTCGTCTA 57.675 40.909 0.00 0.00 0.00 2.59
1743 1901 4.809673 CAGTTGCTTCAAAATAAGGGACC 58.190 43.478 0.00 0.00 0.00 4.46
1791 1949 7.634526 TGGACCATGGGTATGTAATAATGTA 57.365 36.000 18.09 0.00 35.25 2.29
1792 1950 7.455058 TGGACCATGGGTATGTAATAATGTAC 58.545 38.462 18.09 0.00 35.25 2.90
1825 1983 2.417097 GCGTTGCTGCCCTGTTTT 59.583 55.556 0.00 0.00 0.00 2.43
1828 1986 1.733402 CGTTGCTGCCCTGTTTTGGA 61.733 55.000 0.00 0.00 0.00 3.53
1829 1987 0.681175 GTTGCTGCCCTGTTTTGGAT 59.319 50.000 0.00 0.00 0.00 3.41
1839 1997 5.954752 TGCCCTGTTTTGGATGTTATCATTA 59.045 36.000 0.00 0.00 34.06 1.90
1840 1998 6.610830 TGCCCTGTTTTGGATGTTATCATTAT 59.389 34.615 0.00 0.00 34.06 1.28
1842 2000 7.661040 CCCTGTTTTGGATGTTATCATTATCC 58.339 38.462 0.00 0.00 40.59 2.59
1876 2034 7.958053 TTTAACTAGCAAAAGAGACAGTACC 57.042 36.000 0.00 0.00 0.00 3.34
1877 2035 5.810080 AACTAGCAAAAGAGACAGTACCT 57.190 39.130 0.00 0.00 0.00 3.08
1878 2036 5.810080 ACTAGCAAAAGAGACAGTACCTT 57.190 39.130 0.00 0.00 0.00 3.50
1879 2037 5.542779 ACTAGCAAAAGAGACAGTACCTTG 58.457 41.667 0.00 0.00 0.00 3.61
1880 2038 3.142174 AGCAAAAGAGACAGTACCTTGC 58.858 45.455 0.00 0.00 38.33 4.01
1881 2039 2.878406 GCAAAAGAGACAGTACCTTGCA 59.122 45.455 0.00 0.00 38.03 4.08
1882 2040 3.315191 GCAAAAGAGACAGTACCTTGCAA 59.685 43.478 0.00 0.00 38.03 4.08
1883 2041 4.789802 GCAAAAGAGACAGTACCTTGCAAC 60.790 45.833 0.00 0.00 38.03 4.17
1884 2042 2.440539 AGAGACAGTACCTTGCAACG 57.559 50.000 0.00 0.00 0.00 4.10
1885 2043 1.687123 AGAGACAGTACCTTGCAACGT 59.313 47.619 6.34 6.34 0.00 3.99
1886 2044 1.792949 GAGACAGTACCTTGCAACGTG 59.207 52.381 10.85 0.00 0.00 4.49
1887 2045 1.411246 AGACAGTACCTTGCAACGTGA 59.589 47.619 10.85 0.00 0.00 4.35
1888 2046 1.792949 GACAGTACCTTGCAACGTGAG 59.207 52.381 10.85 3.98 0.00 3.51
1889 2047 1.148310 CAGTACCTTGCAACGTGAGG 58.852 55.000 10.85 5.63 36.62 3.86
1890 2048 1.045407 AGTACCTTGCAACGTGAGGA 58.955 50.000 8.39 0.00 34.61 3.71
1891 2049 1.414919 AGTACCTTGCAACGTGAGGAA 59.585 47.619 8.39 5.08 34.61 3.36
1892 2050 2.158871 AGTACCTTGCAACGTGAGGAAA 60.159 45.455 8.39 0.00 34.61 3.13
1893 2051 1.757682 ACCTTGCAACGTGAGGAAAA 58.242 45.000 8.39 0.00 34.61 2.29
1894 2052 2.096248 ACCTTGCAACGTGAGGAAAAA 58.904 42.857 8.39 0.00 34.61 1.94
1895 2053 2.693074 ACCTTGCAACGTGAGGAAAAAT 59.307 40.909 8.39 0.00 34.61 1.82
1896 2054 3.886505 ACCTTGCAACGTGAGGAAAAATA 59.113 39.130 8.39 0.00 34.61 1.40
1897 2055 4.339814 ACCTTGCAACGTGAGGAAAAATAA 59.660 37.500 8.39 0.00 34.61 1.40
1898 2056 4.679654 CCTTGCAACGTGAGGAAAAATAAC 59.320 41.667 0.00 0.00 32.11 1.89
1899 2057 4.902443 TGCAACGTGAGGAAAAATAACA 57.098 36.364 0.00 0.00 0.00 2.41
1900 2058 4.602995 TGCAACGTGAGGAAAAATAACAC 58.397 39.130 0.00 0.00 0.00 3.32
1901 2059 4.096532 TGCAACGTGAGGAAAAATAACACA 59.903 37.500 0.00 0.00 0.00 3.72
1902 2060 5.038033 GCAACGTGAGGAAAAATAACACAA 58.962 37.500 0.00 0.00 0.00 3.33
1903 2061 5.517054 GCAACGTGAGGAAAAATAACACAAA 59.483 36.000 0.00 0.00 0.00 2.83
1904 2062 6.507299 GCAACGTGAGGAAAAATAACACAAAC 60.507 38.462 0.00 0.00 0.00 2.93
1905 2063 6.445357 ACGTGAGGAAAAATAACACAAACT 57.555 33.333 0.00 0.00 0.00 2.66
1906 2064 6.492254 ACGTGAGGAAAAATAACACAAACTC 58.508 36.000 0.00 0.00 0.00 3.01
1907 2065 6.317893 ACGTGAGGAAAAATAACACAAACTCT 59.682 34.615 0.00 0.00 0.00 3.24
1908 2066 7.148137 ACGTGAGGAAAAATAACACAAACTCTT 60.148 33.333 0.00 0.00 0.00 2.85
1909 2067 8.339714 CGTGAGGAAAAATAACACAAACTCTTA 58.660 33.333 0.00 0.00 0.00 2.10
1912 2070 9.459640 GAGGAAAAATAACACAAACTCTTAACC 57.540 33.333 0.00 0.00 0.00 2.85
1913 2071 8.418662 AGGAAAAATAACACAAACTCTTAACCC 58.581 33.333 0.00 0.00 0.00 4.11
1914 2072 8.198778 GGAAAAATAACACAAACTCTTAACCCA 58.801 33.333 0.00 0.00 0.00 4.51
1915 2073 9.589111 GAAAAATAACACAAACTCTTAACCCAA 57.411 29.630 0.00 0.00 0.00 4.12
1920 2078 6.327279 ACACAAACTCTTAACCCAATAAGC 57.673 37.500 0.00 0.00 33.74 3.09
1921 2079 5.830991 ACACAAACTCTTAACCCAATAAGCA 59.169 36.000 0.00 0.00 33.74 3.91
1922 2080 6.493458 ACACAAACTCTTAACCCAATAAGCAT 59.507 34.615 0.00 0.00 33.74 3.79
1923 2081 7.015195 ACACAAACTCTTAACCCAATAAGCATT 59.985 33.333 0.00 0.00 33.74 3.56
1924 2082 8.519526 CACAAACTCTTAACCCAATAAGCATTA 58.480 33.333 0.00 0.00 33.74 1.90
1925 2083 8.520351 ACAAACTCTTAACCCAATAAGCATTAC 58.480 33.333 0.00 0.00 33.74 1.89
1926 2084 8.739972 CAAACTCTTAACCCAATAAGCATTACT 58.260 33.333 0.00 0.00 33.74 2.24
1927 2085 8.879427 AACTCTTAACCCAATAAGCATTACTT 57.121 30.769 0.00 0.00 42.76 2.24
1928 2086 9.969001 AACTCTTAACCCAATAAGCATTACTTA 57.031 29.630 0.00 0.00 44.87 2.24
1929 2087 9.969001 ACTCTTAACCCAATAAGCATTACTTAA 57.031 29.630 0.00 0.00 43.99 1.85
1933 2091 7.640597 AACCCAATAAGCATTACTTAAGACC 57.359 36.000 10.09 0.00 43.99 3.85
1934 2092 6.727394 ACCCAATAAGCATTACTTAAGACCA 58.273 36.000 10.09 0.00 43.99 4.02
1935 2093 6.602009 ACCCAATAAGCATTACTTAAGACCAC 59.398 38.462 10.09 0.00 43.99 4.16
1936 2094 6.601613 CCCAATAAGCATTACTTAAGACCACA 59.398 38.462 10.09 0.00 43.99 4.17
1937 2095 7.122055 CCCAATAAGCATTACTTAAGACCACAA 59.878 37.037 10.09 0.00 43.99 3.33
1938 2096 8.686334 CCAATAAGCATTACTTAAGACCACAAT 58.314 33.333 10.09 0.00 43.99 2.71
1941 2099 7.865706 AAGCATTACTTAAGACCACAATAGG 57.134 36.000 10.09 0.00 36.62 2.57
1942 2100 6.958767 AGCATTACTTAAGACCACAATAGGT 58.041 36.000 10.09 0.00 46.82 3.08
1943 2101 7.553044 AAGCATTACTTAAGACCACAATAGGTC 59.447 37.037 10.09 5.01 46.83 3.85
1950 2108 2.467566 ACCACAATAGGTCCACGTTC 57.532 50.000 0.00 0.00 37.28 3.95
1951 2109 1.975680 ACCACAATAGGTCCACGTTCT 59.024 47.619 0.00 0.00 37.28 3.01
1952 2110 2.370849 ACCACAATAGGTCCACGTTCTT 59.629 45.455 0.00 0.00 37.28 2.52
1953 2111 3.181448 ACCACAATAGGTCCACGTTCTTT 60.181 43.478 0.00 0.00 37.28 2.52
1954 2112 4.040706 ACCACAATAGGTCCACGTTCTTTA 59.959 41.667 0.00 0.00 37.28 1.85
1955 2113 5.183228 CCACAATAGGTCCACGTTCTTTAT 58.817 41.667 0.00 0.00 0.00 1.40
1956 2114 5.646360 CCACAATAGGTCCACGTTCTTTATT 59.354 40.000 0.00 0.00 0.00 1.40
1957 2115 6.150474 CCACAATAGGTCCACGTTCTTTATTT 59.850 38.462 0.00 0.00 0.00 1.40
1958 2116 7.308951 CCACAATAGGTCCACGTTCTTTATTTT 60.309 37.037 0.00 0.00 0.00 1.82
1959 2117 8.723311 CACAATAGGTCCACGTTCTTTATTTTA 58.277 33.333 0.00 0.00 0.00 1.52
1960 2118 8.943002 ACAATAGGTCCACGTTCTTTATTTTAG 58.057 33.333 0.00 0.00 0.00 1.85
1961 2119 5.874895 AGGTCCACGTTCTTTATTTTAGC 57.125 39.130 0.00 0.00 0.00 3.09
1962 2120 4.390909 AGGTCCACGTTCTTTATTTTAGCG 59.609 41.667 0.00 0.00 0.00 4.26
1963 2121 4.436451 GGTCCACGTTCTTTATTTTAGCGG 60.436 45.833 0.00 0.00 0.00 5.52
1964 2122 3.685756 TCCACGTTCTTTATTTTAGCGGG 59.314 43.478 0.00 0.00 0.00 6.13
1965 2123 3.181504 CCACGTTCTTTATTTTAGCGGGG 60.182 47.826 0.00 0.00 35.09 5.73
1966 2124 2.421073 ACGTTCTTTATTTTAGCGGGGC 59.579 45.455 0.00 0.00 0.00 5.80
1967 2125 2.420722 CGTTCTTTATTTTAGCGGGGCA 59.579 45.455 0.00 0.00 0.00 5.36
1968 2126 3.066203 CGTTCTTTATTTTAGCGGGGCAT 59.934 43.478 0.00 0.00 0.00 4.40
1969 2127 4.607955 GTTCTTTATTTTAGCGGGGCATC 58.392 43.478 0.00 0.00 0.00 3.91
1970 2128 3.892284 TCTTTATTTTAGCGGGGCATCA 58.108 40.909 0.00 0.00 0.00 3.07
1971 2129 3.630312 TCTTTATTTTAGCGGGGCATCAC 59.370 43.478 0.00 0.00 0.00 3.06
1972 2130 2.719531 TATTTTAGCGGGGCATCACA 57.280 45.000 0.00 0.00 0.00 3.58
1973 2131 1.846007 ATTTTAGCGGGGCATCACAA 58.154 45.000 0.00 0.00 0.00 3.33
1974 2132 1.846007 TTTTAGCGGGGCATCACAAT 58.154 45.000 0.00 0.00 0.00 2.71
1975 2133 1.846007 TTTAGCGGGGCATCACAATT 58.154 45.000 0.00 0.00 0.00 2.32
1976 2134 1.102154 TTAGCGGGGCATCACAATTG 58.898 50.000 3.24 3.24 0.00 2.32
1977 2135 0.034574 TAGCGGGGCATCACAATTGT 60.035 50.000 4.92 4.92 0.00 2.71
1978 2136 1.153784 GCGGGGCATCACAATTGTG 60.154 57.895 29.01 29.01 46.91 3.33
1979 2137 1.876497 GCGGGGCATCACAATTGTGT 61.876 55.000 31.99 19.57 45.76 3.72
1980 2138 0.602562 CGGGGCATCACAATTGTGTT 59.397 50.000 31.99 23.82 45.76 3.32
1981 2139 1.669502 CGGGGCATCACAATTGTGTTG 60.670 52.381 31.77 31.77 45.76 3.33
1986 2144 3.374220 CATCACAATTGTGTTGCCACT 57.626 42.857 31.99 11.16 45.76 4.00
1987 2145 3.719924 CATCACAATTGTGTTGCCACTT 58.280 40.909 31.99 10.14 45.76 3.16
1988 2146 4.869215 CATCACAATTGTGTTGCCACTTA 58.131 39.130 31.99 14.42 45.76 2.24
1989 2147 5.472148 CATCACAATTGTGTTGCCACTTAT 58.528 37.500 31.99 15.88 45.76 1.73
1990 2148 5.119931 TCACAATTGTGTTGCCACTTATC 57.880 39.130 31.99 0.00 45.76 1.75
1991 2149 4.022416 TCACAATTGTGTTGCCACTTATCC 60.022 41.667 31.99 0.00 45.76 2.59
1992 2150 4.022068 CACAATTGTGTTGCCACTTATCCT 60.022 41.667 27.08 0.00 42.34 3.24
1993 2151 4.218417 ACAATTGTGTTGCCACTTATCCTC 59.782 41.667 11.07 0.00 42.34 3.71
1994 2152 2.489938 TGTGTTGCCACTTATCCTCC 57.510 50.000 0.00 0.00 42.34 4.30
1995 2153 1.985159 TGTGTTGCCACTTATCCTCCT 59.015 47.619 0.00 0.00 42.34 3.69
1996 2154 2.375174 TGTGTTGCCACTTATCCTCCTT 59.625 45.455 0.00 0.00 42.34 3.36
1997 2155 3.010420 GTGTTGCCACTTATCCTCCTTC 58.990 50.000 0.00 0.00 38.61 3.46
1998 2156 2.642311 TGTTGCCACTTATCCTCCTTCA 59.358 45.455 0.00 0.00 0.00 3.02
1999 2157 3.010420 GTTGCCACTTATCCTCCTTCAC 58.990 50.000 0.00 0.00 0.00 3.18
2000 2158 2.265367 TGCCACTTATCCTCCTTCACA 58.735 47.619 0.00 0.00 0.00 3.58
2001 2159 2.846206 TGCCACTTATCCTCCTTCACAT 59.154 45.455 0.00 0.00 0.00 3.21
2002 2160 4.037222 TGCCACTTATCCTCCTTCACATA 58.963 43.478 0.00 0.00 0.00 2.29
2003 2161 4.660303 TGCCACTTATCCTCCTTCACATAT 59.340 41.667 0.00 0.00 0.00 1.78
2004 2162 5.132648 TGCCACTTATCCTCCTTCACATATT 59.867 40.000 0.00 0.00 0.00 1.28
2005 2163 5.703130 GCCACTTATCCTCCTTCACATATTC 59.297 44.000 0.00 0.00 0.00 1.75
2006 2164 6.688922 GCCACTTATCCTCCTTCACATATTCA 60.689 42.308 0.00 0.00 0.00 2.57
2007 2165 6.708054 CCACTTATCCTCCTTCACATATTCAC 59.292 42.308 0.00 0.00 0.00 3.18
2008 2166 6.708054 CACTTATCCTCCTTCACATATTCACC 59.292 42.308 0.00 0.00 0.00 4.02
2009 2167 3.819564 TCCTCCTTCACATATTCACCG 57.180 47.619 0.00 0.00 0.00 4.94
2010 2168 2.434336 TCCTCCTTCACATATTCACCGG 59.566 50.000 0.00 0.00 0.00 5.28
2011 2169 2.213499 CTCCTTCACATATTCACCGGC 58.787 52.381 0.00 0.00 0.00 6.13
2012 2170 0.937304 CCTTCACATATTCACCGGCG 59.063 55.000 0.00 0.00 0.00 6.46
2013 2171 0.937304 CTTCACATATTCACCGGCGG 59.063 55.000 27.06 27.06 0.00 6.13
2014 2172 0.250793 TTCACATATTCACCGGCGGT 59.749 50.000 28.83 28.83 35.62 5.68
2023 2181 3.319198 ACCGGCGGTGGATTCAGT 61.319 61.111 33.71 1.44 32.98 3.41
2024 2182 2.819595 CCGGCGGTGGATTCAGTG 60.820 66.667 19.97 0.00 0.00 3.66
2025 2183 2.047274 CGGCGGTGGATTCAGTGT 60.047 61.111 0.00 0.00 0.00 3.55
2026 2184 1.671054 CGGCGGTGGATTCAGTGTT 60.671 57.895 0.00 0.00 0.00 3.32
2027 2185 1.234615 CGGCGGTGGATTCAGTGTTT 61.235 55.000 0.00 0.00 0.00 2.83
2028 2186 1.816074 GGCGGTGGATTCAGTGTTTA 58.184 50.000 0.00 0.00 0.00 2.01
2029 2187 1.467342 GGCGGTGGATTCAGTGTTTAC 59.533 52.381 0.00 0.00 0.00 2.01
2030 2188 2.147958 GCGGTGGATTCAGTGTTTACA 58.852 47.619 0.00 0.00 0.00 2.41
2031 2189 2.550606 GCGGTGGATTCAGTGTTTACAA 59.449 45.455 0.00 0.00 0.00 2.41
2032 2190 3.003897 GCGGTGGATTCAGTGTTTACAAA 59.996 43.478 0.00 0.00 0.00 2.83
2033 2191 4.498345 GCGGTGGATTCAGTGTTTACAAAA 60.498 41.667 0.00 0.00 0.00 2.44
2034 2192 5.583495 CGGTGGATTCAGTGTTTACAAAAA 58.417 37.500 0.00 0.00 0.00 1.94
2035 2193 5.457473 CGGTGGATTCAGTGTTTACAAAAAC 59.543 40.000 0.00 0.00 44.40 2.43
2036 2194 5.751509 GGTGGATTCAGTGTTTACAAAAACC 59.248 40.000 0.00 0.00 43.66 3.27
2037 2195 6.334202 GTGGATTCAGTGTTTACAAAAACCA 58.666 36.000 0.00 0.00 43.66 3.67
2038 2196 6.814146 GTGGATTCAGTGTTTACAAAAACCAA 59.186 34.615 0.00 0.00 43.66 3.67
2039 2197 7.332182 GTGGATTCAGTGTTTACAAAAACCAAA 59.668 33.333 0.00 0.00 43.66 3.28
2040 2198 7.878127 TGGATTCAGTGTTTACAAAAACCAAAA 59.122 29.630 0.00 0.00 43.66 2.44
2041 2199 8.172484 GGATTCAGTGTTTACAAAAACCAAAAC 58.828 33.333 0.00 0.00 43.66 2.43
2042 2200 8.608844 ATTCAGTGTTTACAAAAACCAAAACA 57.391 26.923 0.00 0.00 43.66 2.83
2043 2201 8.608844 TTCAGTGTTTACAAAAACCAAAACAT 57.391 26.923 3.16 0.00 43.66 2.71
2044 2202 8.023050 TCAGTGTTTACAAAAACCAAAACATG 57.977 30.769 3.16 0.00 43.66 3.21
2045 2203 7.657761 TCAGTGTTTACAAAAACCAAAACATGT 59.342 29.630 0.00 0.00 43.66 3.21
2046 2204 8.286097 CAGTGTTTACAAAAACCAAAACATGTT 58.714 29.630 4.92 4.92 43.66 2.71
2047 2205 8.841300 AGTGTTTACAAAAACCAAAACATGTTT 58.159 25.926 18.13 18.13 43.66 2.83
2048 2206 8.896826 GTGTTTACAAAAACCAAAACATGTTTG 58.103 29.630 23.93 14.80 43.66 2.93
2049 2207 8.836413 TGTTTACAAAAACCAAAACATGTTTGA 58.164 25.926 23.93 0.00 43.66 2.69
2050 2208 9.665264 GTTTACAAAAACCAAAACATGTTTGAA 57.335 25.926 23.93 0.00 39.29 2.69
2055 2213 9.448294 CAAAAACCAAAACATGTTTGAATATGG 57.552 29.630 26.58 26.58 35.03 2.74
2056 2214 8.744568 AAAACCAAAACATGTTTGAATATGGT 57.255 26.923 27.57 27.57 40.19 3.55
2058 2216 9.838339 AAACCAAAACATGTTTGAATATGGTTA 57.162 25.926 35.32 0.00 45.19 2.85
2059 2217 9.838339 AACCAAAACATGTTTGAATATGGTTAA 57.162 25.926 34.81 0.00 44.39 2.01
2367 2525 3.390175 TTTCCCCTGTGAGGTTTTTCA 57.610 42.857 0.00 0.00 31.93 2.69
2368 2526 2.656947 TCCCCTGTGAGGTTTTTCAG 57.343 50.000 0.00 0.00 31.93 3.02
2369 2527 2.131854 TCCCCTGTGAGGTTTTTCAGA 58.868 47.619 0.00 0.00 31.93 3.27
2370 2528 2.106511 TCCCCTGTGAGGTTTTTCAGAG 59.893 50.000 0.00 0.00 38.00 3.35
2374 2532 3.545703 CTGTGAGGTTTTTCAGAGGTGT 58.454 45.455 0.00 0.00 35.47 4.16
2375 2533 3.278574 TGTGAGGTTTTTCAGAGGTGTG 58.721 45.455 0.00 0.00 0.00 3.82
2376 2534 2.033424 GTGAGGTTTTTCAGAGGTGTGC 59.967 50.000 0.00 0.00 0.00 4.57
2377 2535 2.297701 GAGGTTTTTCAGAGGTGTGCA 58.702 47.619 0.00 0.00 0.00 4.57
2378 2536 2.887152 GAGGTTTTTCAGAGGTGTGCAT 59.113 45.455 0.00 0.00 0.00 3.96
2379 2537 3.299503 AGGTTTTTCAGAGGTGTGCATT 58.700 40.909 0.00 0.00 0.00 3.56
2380 2538 3.706086 AGGTTTTTCAGAGGTGTGCATTT 59.294 39.130 0.00 0.00 0.00 2.32
2381 2539 3.803778 GGTTTTTCAGAGGTGTGCATTTG 59.196 43.478 0.00 0.00 0.00 2.32
2382 2540 4.432712 GTTTTTCAGAGGTGTGCATTTGT 58.567 39.130 0.00 0.00 0.00 2.83
2383 2541 3.713858 TTTCAGAGGTGTGCATTTGTG 57.286 42.857 0.00 0.00 0.00 3.33
2384 2542 1.608055 TCAGAGGTGTGCATTTGTGG 58.392 50.000 0.00 0.00 0.00 4.17
2385 2543 1.133823 TCAGAGGTGTGCATTTGTGGT 60.134 47.619 0.00 0.00 0.00 4.16
2386 2544 1.682854 CAGAGGTGTGCATTTGTGGTT 59.317 47.619 0.00 0.00 0.00 3.67
2387 2545 2.884012 CAGAGGTGTGCATTTGTGGTTA 59.116 45.455 0.00 0.00 0.00 2.85
2388 2546 3.507233 CAGAGGTGTGCATTTGTGGTTAT 59.493 43.478 0.00 0.00 0.00 1.89
2389 2547 3.758554 AGAGGTGTGCATTTGTGGTTATC 59.241 43.478 0.00 0.00 0.00 1.75
2390 2548 2.487762 AGGTGTGCATTTGTGGTTATCG 59.512 45.455 0.00 0.00 0.00 2.92
2391 2549 2.486203 GGTGTGCATTTGTGGTTATCGA 59.514 45.455 0.00 0.00 0.00 3.59
2392 2550 3.128589 GGTGTGCATTTGTGGTTATCGAT 59.871 43.478 2.16 2.16 0.00 3.59
2393 2551 4.097714 GTGTGCATTTGTGGTTATCGATG 58.902 43.478 8.54 0.00 0.00 3.84
2394 2552 3.755905 TGTGCATTTGTGGTTATCGATGT 59.244 39.130 8.54 0.00 0.00 3.06
2395 2553 4.217334 TGTGCATTTGTGGTTATCGATGTT 59.783 37.500 8.54 0.00 0.00 2.71
2396 2554 5.160641 GTGCATTTGTGGTTATCGATGTTT 58.839 37.500 8.54 0.00 0.00 2.83
2397 2555 5.633182 GTGCATTTGTGGTTATCGATGTTTT 59.367 36.000 8.54 0.00 0.00 2.43
2398 2556 6.145371 GTGCATTTGTGGTTATCGATGTTTTT 59.855 34.615 8.54 0.00 0.00 1.94
2422 2580 9.542462 TTTTCGTCTCTATATGATTTTAGTGGG 57.458 33.333 0.00 0.00 0.00 4.61
2423 2581 7.834881 TCGTCTCTATATGATTTTAGTGGGT 57.165 36.000 0.00 0.00 0.00 4.51
2424 2582 7.658261 TCGTCTCTATATGATTTTAGTGGGTG 58.342 38.462 0.00 0.00 0.00 4.61
2425 2583 6.366332 CGTCTCTATATGATTTTAGTGGGTGC 59.634 42.308 0.00 0.00 0.00 5.01
2426 2584 7.445945 GTCTCTATATGATTTTAGTGGGTGCT 58.554 38.462 0.00 0.00 0.00 4.40
2427 2585 7.934120 GTCTCTATATGATTTTAGTGGGTGCTT 59.066 37.037 0.00 0.00 0.00 3.91
2428 2586 9.154632 TCTCTATATGATTTTAGTGGGTGCTTA 57.845 33.333 0.00 0.00 0.00 3.09
2429 2587 9.950496 CTCTATATGATTTTAGTGGGTGCTTAT 57.050 33.333 0.00 0.00 0.00 1.73
2433 2591 5.719173 TGATTTTAGTGGGTGCTTATTTGC 58.281 37.500 0.00 0.00 0.00 3.68
2434 2592 5.244851 TGATTTTAGTGGGTGCTTATTTGCA 59.755 36.000 0.00 0.00 41.05 4.08
2435 2593 5.537300 TTTTAGTGGGTGCTTATTTGCAA 57.463 34.783 0.00 0.00 45.12 4.08
2436 2594 5.736951 TTTAGTGGGTGCTTATTTGCAAT 57.263 34.783 0.00 0.00 45.12 3.56
2437 2595 6.842437 TTTAGTGGGTGCTTATTTGCAATA 57.158 33.333 0.00 0.00 45.12 1.90
2438 2596 7.416964 TTTAGTGGGTGCTTATTTGCAATAT 57.583 32.000 0.00 0.00 45.12 1.28
2439 2597 5.266733 AGTGGGTGCTTATTTGCAATATG 57.733 39.130 0.00 0.00 45.12 1.78
2440 2598 4.099881 AGTGGGTGCTTATTTGCAATATGG 59.900 41.667 0.00 0.00 45.12 2.74
2441 2599 4.099266 GTGGGTGCTTATTTGCAATATGGA 59.901 41.667 0.00 0.00 45.12 3.41
2442 2600 4.900652 TGGGTGCTTATTTGCAATATGGAT 59.099 37.500 0.00 0.00 45.12 3.41
2443 2601 5.221481 TGGGTGCTTATTTGCAATATGGATG 60.221 40.000 0.00 0.00 45.12 3.51
2444 2602 5.232463 GGTGCTTATTTGCAATATGGATGG 58.768 41.667 0.00 0.00 45.12 3.51
2445 2603 5.221501 GGTGCTTATTTGCAATATGGATGGT 60.222 40.000 0.00 0.00 45.12 3.55
2446 2604 5.922544 GTGCTTATTTGCAATATGGATGGTC 59.077 40.000 0.00 0.00 45.12 4.02
2447 2605 5.156355 GCTTATTTGCAATATGGATGGTCG 58.844 41.667 0.00 0.00 0.00 4.79
2448 2606 3.648339 ATTTGCAATATGGATGGTCGC 57.352 42.857 0.00 0.00 0.00 5.19
2449 2607 1.317613 TTGCAATATGGATGGTCGCC 58.682 50.000 0.00 0.00 0.00 5.54
2450 2608 0.884259 TGCAATATGGATGGTCGCCG 60.884 55.000 0.00 0.00 0.00 6.46
2451 2609 1.577328 GCAATATGGATGGTCGCCGG 61.577 60.000 0.00 0.00 0.00 6.13
2452 2610 0.250295 CAATATGGATGGTCGCCGGT 60.250 55.000 1.90 0.00 0.00 5.28
2453 2611 1.001520 CAATATGGATGGTCGCCGGTA 59.998 52.381 1.90 0.00 0.00 4.02
2454 2612 0.606604 ATATGGATGGTCGCCGGTAC 59.393 55.000 1.90 1.25 0.00 3.34
2455 2613 0.756070 TATGGATGGTCGCCGGTACA 60.756 55.000 1.90 0.00 0.00 2.90
2456 2614 1.618876 ATGGATGGTCGCCGGTACAA 61.619 55.000 1.90 0.00 0.00 2.41
2457 2615 1.078988 GGATGGTCGCCGGTACAAA 60.079 57.895 1.90 0.00 0.00 2.83
2458 2616 0.674269 GGATGGTCGCCGGTACAAAA 60.674 55.000 1.90 0.00 0.00 2.44
2459 2617 0.725117 GATGGTCGCCGGTACAAAAG 59.275 55.000 1.90 0.00 0.00 2.27
2460 2618 0.322322 ATGGTCGCCGGTACAAAAGA 59.678 50.000 1.90 0.00 0.00 2.52
2461 2619 0.106335 TGGTCGCCGGTACAAAAGAA 59.894 50.000 1.90 0.00 0.00 2.52
2462 2620 1.228533 GGTCGCCGGTACAAAAGAAA 58.771 50.000 1.90 0.00 0.00 2.52
2463 2621 1.196127 GGTCGCCGGTACAAAAGAAAG 59.804 52.381 1.90 0.00 0.00 2.62
2464 2622 2.137523 GTCGCCGGTACAAAAGAAAGA 58.862 47.619 1.90 0.00 0.00 2.52
2465 2623 2.096565 GTCGCCGGTACAAAAGAAAGAC 60.097 50.000 1.90 0.00 0.00 3.01
2466 2624 1.136446 CGCCGGTACAAAAGAAAGACG 60.136 52.381 1.90 0.00 0.00 4.18
2467 2625 1.196127 GCCGGTACAAAAGAAAGACGG 59.804 52.381 1.90 0.00 42.68 4.79
2468 2626 2.758009 CCGGTACAAAAGAAAGACGGA 58.242 47.619 0.00 0.00 42.42 4.69
2469 2627 2.477754 CCGGTACAAAAGAAAGACGGAC 59.522 50.000 0.00 0.00 42.42 4.79
2470 2628 2.477754 CGGTACAAAAGAAAGACGGACC 59.522 50.000 0.00 0.00 0.00 4.46
2471 2629 2.477754 GGTACAAAAGAAAGACGGACCG 59.522 50.000 13.61 13.61 0.00 4.79
2472 2630 2.320745 ACAAAAGAAAGACGGACCGT 57.679 45.000 21.93 21.93 45.10 4.83
2473 2631 1.937899 ACAAAAGAAAGACGGACCGTG 59.062 47.619 27.26 9.12 41.37 4.94
2474 2632 0.942252 AAAAGAAAGACGGACCGTGC 59.058 50.000 27.26 15.80 41.37 5.34
2475 2633 1.219522 AAAGAAAGACGGACCGTGCG 61.220 55.000 27.26 11.23 41.37 5.34
2476 2634 3.774702 GAAAGACGGACCGTGCGC 61.775 66.667 27.26 10.49 41.37 6.09
2477 2635 4.295119 AAAGACGGACCGTGCGCT 62.295 61.111 27.26 12.96 41.37 5.92
2478 2636 2.807631 GAAAGACGGACCGTGCGCTA 62.808 60.000 27.26 0.00 41.37 4.26
2479 2637 2.221906 AAAGACGGACCGTGCGCTAT 62.222 55.000 27.26 0.00 41.37 2.97
2480 2638 2.202703 GACGGACCGTGCGCTATT 60.203 61.111 27.26 0.00 41.37 1.73
2481 2639 2.508439 ACGGACCGTGCGCTATTG 60.508 61.111 21.02 0.00 39.18 1.90
2482 2640 2.202690 CGGACCGTGCGCTATTGA 60.203 61.111 9.73 0.00 0.00 2.57
2483 2641 1.591594 CGGACCGTGCGCTATTGAT 60.592 57.895 9.73 0.00 0.00 2.57
2484 2642 1.151777 CGGACCGTGCGCTATTGATT 61.152 55.000 9.73 0.00 0.00 2.57
2485 2643 1.860676 GGACCGTGCGCTATTGATTA 58.139 50.000 9.73 0.00 0.00 1.75
2486 2644 2.413837 GGACCGTGCGCTATTGATTAT 58.586 47.619 9.73 0.00 0.00 1.28
2487 2645 3.581755 GGACCGTGCGCTATTGATTATA 58.418 45.455 9.73 0.00 0.00 0.98
2488 2646 3.991773 GGACCGTGCGCTATTGATTATAA 59.008 43.478 9.73 0.00 0.00 0.98
2489 2647 4.091509 GGACCGTGCGCTATTGATTATAAG 59.908 45.833 9.73 0.00 0.00 1.73
2490 2648 4.628074 ACCGTGCGCTATTGATTATAAGT 58.372 39.130 9.73 0.00 0.00 2.24
2491 2649 5.054477 ACCGTGCGCTATTGATTATAAGTT 58.946 37.500 9.73 0.00 0.00 2.66
2492 2650 5.526111 ACCGTGCGCTATTGATTATAAGTTT 59.474 36.000 9.73 0.00 0.00 2.66
2493 2651 5.845953 CCGTGCGCTATTGATTATAAGTTTG 59.154 40.000 9.73 0.00 0.00 2.93
2494 2652 5.336990 CGTGCGCTATTGATTATAAGTTTGC 59.663 40.000 9.73 0.00 0.00 3.68
2495 2653 6.430451 GTGCGCTATTGATTATAAGTTTGCT 58.570 36.000 9.73 0.00 0.00 3.91
2496 2654 6.912591 GTGCGCTATTGATTATAAGTTTGCTT 59.087 34.615 9.73 0.00 38.66 3.91
2497 2655 7.112148 GTGCGCTATTGATTATAAGTTTGCTTC 59.888 37.037 9.73 0.00 36.22 3.86
2498 2656 6.300902 GCGCTATTGATTATAAGTTTGCTTCG 59.699 38.462 0.00 0.00 36.22 3.79
2499 2657 7.564128 CGCTATTGATTATAAGTTTGCTTCGA 58.436 34.615 0.00 0.00 36.22 3.71
2500 2658 8.061857 CGCTATTGATTATAAGTTTGCTTCGAA 58.938 33.333 0.00 0.00 36.22 3.71
2501 2659 9.716507 GCTATTGATTATAAGTTTGCTTCGAAA 57.283 29.630 0.00 0.00 36.22 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 2.726274 GTGTCGACACACCTCGGT 59.274 61.111 37.16 0.00 46.49 4.69
116 118 1.271379 CCCGGAGACATCAACCAAACT 60.271 52.381 0.73 0.00 0.00 2.66
176 184 3.052082 GGGACGACGTCGAGGACA 61.052 66.667 41.52 0.00 43.02 4.02
260 268 4.334552 TGCAGAACAATCTTGGATAGCAA 58.665 39.130 0.00 0.00 32.03 3.91
310 322 4.045104 CGAGAAAGGTATCATCTTGGACG 58.955 47.826 0.00 0.00 0.00 4.79
323 335 0.038744 TAGTCCGTCCCGAGAAAGGT 59.961 55.000 0.00 0.00 0.00 3.50
341 353 1.133915 GGAGGTGGATGGCGGAATTTA 60.134 52.381 0.00 0.00 0.00 1.40
393 405 5.565439 CGCCTCCAAAAAGAACATCTTCATT 60.565 40.000 0.00 0.00 35.27 2.57
426 438 2.357517 CAAGGCCGCGTCTCAACT 60.358 61.111 4.92 0.00 0.00 3.16
444 456 2.500098 ACGCCTATCCTAAACTGAGCAA 59.500 45.455 0.00 0.00 0.00 3.91
464 476 4.149747 CACACACCAACAACAACAAGAAAC 59.850 41.667 0.00 0.00 0.00 2.78
481 493 1.152963 AAGACAGCCCCACACACAC 60.153 57.895 0.00 0.00 0.00 3.82
535 573 2.561478 AAATGACAGCCCGTTACACT 57.439 45.000 0.00 0.00 0.00 3.55
537 575 3.134574 AGAAAATGACAGCCCGTTACA 57.865 42.857 0.00 0.00 0.00 2.41
539 577 3.482436 ACAAGAAAATGACAGCCCGTTA 58.518 40.909 0.00 0.00 0.00 3.18
545 583 5.915196 GGTTTGAGTACAAGAAAATGACAGC 59.085 40.000 0.00 0.00 37.32 4.40
571 609 6.982724 GCGTACCTAAGCTTTATAGAAGGAAA 59.017 38.462 16.00 2.93 0.00 3.13
573 611 5.595542 TGCGTACCTAAGCTTTATAGAAGGA 59.404 40.000 16.00 0.00 0.00 3.36
628 666 3.921630 CGGTTTCTTTTGTTTTTGTCGGT 59.078 39.130 0.00 0.00 0.00 4.69
674 714 2.637025 GTTTTTCTCTGCGCGGCA 59.363 55.556 12.58 5.56 36.92 5.69
692 732 0.671472 TGATCGTCACTGCTTGGCTG 60.671 55.000 0.00 0.00 0.00 4.85
696 736 1.354337 CCCGTGATCGTCACTGCTTG 61.354 60.000 13.65 1.74 44.85 4.01
697 737 1.079819 CCCGTGATCGTCACTGCTT 60.080 57.895 13.65 0.00 44.85 3.91
698 738 2.276116 ACCCGTGATCGTCACTGCT 61.276 57.895 13.65 0.00 44.85 4.24
958 1039 2.354510 CCAAGTCGCAAGTGAAAGTGAA 59.645 45.455 0.00 0.00 39.48 3.18
979 1060 1.271054 TGGTCTCAGGAGCAAAGCTTC 60.271 52.381 0.00 0.00 45.39 3.86
1274 1361 3.109547 CGCAGGCGACGCACTTTA 61.110 61.111 23.09 0.00 42.83 1.85
1282 1369 1.664965 ACTTCTTCACGCAGGCGAC 60.665 57.895 21.62 0.00 42.83 5.19
1283 1370 1.664649 CACTTCTTCACGCAGGCGA 60.665 57.895 21.62 0.00 42.83 5.54
1284 1371 2.856032 CACTTCTTCACGCAGGCG 59.144 61.111 12.71 12.71 46.03 5.52
1347 1434 2.028190 CATCCCGGCTCGCAGTAG 59.972 66.667 0.00 0.00 0.00 2.57
1533 1620 4.099881 ACTCGACTAGCTAGCTACAGTAGT 59.900 45.833 20.67 17.80 0.00 2.73
1538 1625 4.139859 AGAACTCGACTAGCTAGCTACA 57.860 45.455 20.67 3.45 0.00 2.74
1539 1626 6.421405 GTTTAGAACTCGACTAGCTAGCTAC 58.579 44.000 20.67 11.02 0.00 3.58
1540 1627 5.233902 CGTTTAGAACTCGACTAGCTAGCTA 59.766 44.000 22.85 22.85 0.00 3.32
1541 1628 4.034279 CGTTTAGAACTCGACTAGCTAGCT 59.966 45.833 23.12 23.12 0.00 3.32
1544 1631 3.624861 CCCGTTTAGAACTCGACTAGCTA 59.375 47.826 0.00 0.00 0.00 3.32
1547 1634 2.098770 CCCCCGTTTAGAACTCGACTAG 59.901 54.545 0.00 0.00 0.00 2.57
1598 1685 3.295093 TGACATGAAACAAGCAAGGGAA 58.705 40.909 0.00 0.00 0.00 3.97
1599 1686 2.942804 TGACATGAAACAAGCAAGGGA 58.057 42.857 0.00 0.00 0.00 4.20
1602 1689 5.045215 ACAACATGACATGAAACAAGCAAG 58.955 37.500 22.19 2.19 0.00 4.01
1606 1693 4.671964 CACGACAACATGACATGAAACAAG 59.328 41.667 22.19 10.35 0.00 3.16
1608 1695 3.625313 ACACGACAACATGACATGAAACA 59.375 39.130 22.19 0.00 0.00 2.83
1623 1710 1.081708 CACGATGACCGACACGACA 60.082 57.895 0.00 0.00 41.76 4.35
1641 1731 7.430992 AACCTAGACGAAATCTAAAACAACC 57.569 36.000 0.00 0.00 39.52 3.77
1664 1754 0.677288 AGGACGACCGACATGACAAA 59.323 50.000 0.00 0.00 41.83 2.83
1682 1837 3.560068 AGACGAACCACTAAAACAGCAAG 59.440 43.478 0.00 0.00 0.00 4.01
1686 1841 4.151867 GCCTTAGACGAACCACTAAAACAG 59.848 45.833 0.00 0.00 0.00 3.16
1696 1854 2.737252 CAACAGAAGCCTTAGACGAACC 59.263 50.000 0.00 0.00 0.00 3.62
1705 1863 0.466922 ACTGCTGCAACAGAAGCCTT 60.467 50.000 23.44 0.00 40.68 4.35
1770 1928 9.610104 TCTAGTACATTATTACATACCCATGGT 57.390 33.333 11.73 1.30 40.16 3.55
1774 1932 9.150028 TGCTTCTAGTACATTATTACATACCCA 57.850 33.333 0.00 0.00 0.00 4.51
1775 1933 9.991906 TTGCTTCTAGTACATTATTACATACCC 57.008 33.333 0.00 0.00 0.00 3.69
1780 1938 8.865978 CGTGTTTGCTTCTAGTACATTATTACA 58.134 33.333 0.00 0.00 0.00 2.41
1781 1939 7.844653 GCGTGTTTGCTTCTAGTACATTATTAC 59.155 37.037 0.00 0.00 0.00 1.89
1782 1940 7.253850 CGCGTGTTTGCTTCTAGTACATTATTA 60.254 37.037 0.00 0.00 0.00 0.98
1783 1941 6.455113 CGCGTGTTTGCTTCTAGTACATTATT 60.455 38.462 0.00 0.00 0.00 1.40
1784 1942 5.005394 CGCGTGTTTGCTTCTAGTACATTAT 59.995 40.000 0.00 0.00 0.00 1.28
1785 1943 4.325204 CGCGTGTTTGCTTCTAGTACATTA 59.675 41.667 0.00 0.00 0.00 1.90
1786 1944 3.122948 CGCGTGTTTGCTTCTAGTACATT 59.877 43.478 0.00 0.00 0.00 2.71
1791 1949 1.860078 GCGCGTGTTTGCTTCTAGT 59.140 52.632 8.43 0.00 0.00 2.57
1792 1950 1.225475 CGCGCGTGTTTGCTTCTAG 60.225 57.895 24.19 0.00 0.00 2.43
1817 1975 7.522073 CGGATAATGATAACATCCAAAACAGGG 60.522 40.741 0.00 0.00 38.53 4.45
1818 1976 7.013274 ACGGATAATGATAACATCCAAAACAGG 59.987 37.037 0.00 0.00 38.53 4.00
1851 2009 8.376270 AGGTACTGTCTCTTTTGCTAGTTAAAT 58.624 33.333 0.00 0.00 37.18 1.40
1857 2015 4.390297 GCAAGGTACTGTCTCTTTTGCTAG 59.610 45.833 0.00 0.00 40.86 3.42
1858 2016 4.202315 TGCAAGGTACTGTCTCTTTTGCTA 60.202 41.667 7.66 0.00 40.86 3.49
1859 2017 3.142174 GCAAGGTACTGTCTCTTTTGCT 58.858 45.455 0.00 0.00 40.86 3.91
1860 2018 2.878406 TGCAAGGTACTGTCTCTTTTGC 59.122 45.455 0.00 0.00 40.86 3.68
1861 2019 4.552767 CGTTGCAAGGTACTGTCTCTTTTG 60.553 45.833 10.97 0.00 40.86 2.44
1862 2020 3.560068 CGTTGCAAGGTACTGTCTCTTTT 59.440 43.478 10.97 0.00 40.86 2.27
1863 2021 3.131396 CGTTGCAAGGTACTGTCTCTTT 58.869 45.455 10.97 0.00 40.86 2.52
1864 2022 2.102588 ACGTTGCAAGGTACTGTCTCTT 59.897 45.455 22.45 0.00 40.86 2.85
1865 2023 1.687123 ACGTTGCAAGGTACTGTCTCT 59.313 47.619 22.45 0.00 40.86 3.10
1866 2024 1.792949 CACGTTGCAAGGTACTGTCTC 59.207 52.381 23.17 0.00 40.86 3.36
1867 2025 1.411246 TCACGTTGCAAGGTACTGTCT 59.589 47.619 23.17 0.00 40.86 3.41
1868 2026 1.792949 CTCACGTTGCAAGGTACTGTC 59.207 52.381 23.17 0.00 40.86 3.51
1869 2027 1.540363 CCTCACGTTGCAAGGTACTGT 60.540 52.381 23.17 0.00 40.86 3.55
1870 2028 1.148310 CCTCACGTTGCAAGGTACTG 58.852 55.000 23.17 15.35 40.86 2.74
1872 2030 1.873698 TTCCTCACGTTGCAAGGTAC 58.126 50.000 23.17 0.00 0.00 3.34
1873 2031 2.623878 TTTCCTCACGTTGCAAGGTA 57.376 45.000 23.17 6.43 0.00 3.08
1874 2032 1.757682 TTTTCCTCACGTTGCAAGGT 58.242 45.000 18.62 18.62 0.00 3.50
1875 2033 2.861462 TTTTTCCTCACGTTGCAAGG 57.139 45.000 17.21 17.21 0.00 3.61
1876 2034 5.173131 GTGTTATTTTTCCTCACGTTGCAAG 59.827 40.000 0.00 0.00 0.00 4.01
1877 2035 5.038033 GTGTTATTTTTCCTCACGTTGCAA 58.962 37.500 0.00 0.00 0.00 4.08
1878 2036 4.096532 TGTGTTATTTTTCCTCACGTTGCA 59.903 37.500 0.00 0.00 32.55 4.08
1879 2037 4.602995 TGTGTTATTTTTCCTCACGTTGC 58.397 39.130 0.00 0.00 32.55 4.17
1880 2038 6.750039 AGTTTGTGTTATTTTTCCTCACGTTG 59.250 34.615 0.00 0.00 32.55 4.10
1881 2039 6.859017 AGTTTGTGTTATTTTTCCTCACGTT 58.141 32.000 0.00 0.00 32.55 3.99
1882 2040 6.317893 AGAGTTTGTGTTATTTTTCCTCACGT 59.682 34.615 0.00 0.00 32.55 4.49
1883 2041 6.725246 AGAGTTTGTGTTATTTTTCCTCACG 58.275 36.000 0.00 0.00 32.55 4.35
1886 2044 9.459640 GGTTAAGAGTTTGTGTTATTTTTCCTC 57.540 33.333 0.00 0.00 0.00 3.71
1887 2045 8.418662 GGGTTAAGAGTTTGTGTTATTTTTCCT 58.581 33.333 0.00 0.00 0.00 3.36
1888 2046 8.198778 TGGGTTAAGAGTTTGTGTTATTTTTCC 58.801 33.333 0.00 0.00 0.00 3.13
1889 2047 9.589111 TTGGGTTAAGAGTTTGTGTTATTTTTC 57.411 29.630 0.00 0.00 0.00 2.29
1894 2052 8.520351 GCTTATTGGGTTAAGAGTTTGTGTTAT 58.480 33.333 0.00 0.00 32.02 1.89
1895 2053 7.502895 TGCTTATTGGGTTAAGAGTTTGTGTTA 59.497 33.333 0.00 0.00 32.02 2.41
1896 2054 6.322712 TGCTTATTGGGTTAAGAGTTTGTGTT 59.677 34.615 0.00 0.00 32.02 3.32
1897 2055 5.830991 TGCTTATTGGGTTAAGAGTTTGTGT 59.169 36.000 0.00 0.00 32.02 3.72
1898 2056 6.325919 TGCTTATTGGGTTAAGAGTTTGTG 57.674 37.500 0.00 0.00 32.02 3.33
1899 2057 7.539034 AATGCTTATTGGGTTAAGAGTTTGT 57.461 32.000 0.00 0.00 32.02 2.83
1900 2058 8.739972 AGTAATGCTTATTGGGTTAAGAGTTTG 58.260 33.333 0.00 0.00 32.02 2.93
1901 2059 8.879427 AGTAATGCTTATTGGGTTAAGAGTTT 57.121 30.769 0.00 0.00 32.02 2.66
1902 2060 8.879427 AAGTAATGCTTATTGGGTTAAGAGTT 57.121 30.769 0.00 0.00 35.27 3.01
1903 2061 9.969001 TTAAGTAATGCTTATTGGGTTAAGAGT 57.031 29.630 0.00 0.00 39.23 3.24
1907 2065 9.181061 GGTCTTAAGTAATGCTTATTGGGTTAA 57.819 33.333 1.63 0.00 39.23 2.01
1908 2066 8.330247 TGGTCTTAAGTAATGCTTATTGGGTTA 58.670 33.333 1.63 0.00 39.23 2.85
1909 2067 7.122204 GTGGTCTTAAGTAATGCTTATTGGGTT 59.878 37.037 1.63 0.00 39.23 4.11
1910 2068 6.602009 GTGGTCTTAAGTAATGCTTATTGGGT 59.398 38.462 1.63 0.00 39.23 4.51
1911 2069 6.601613 TGTGGTCTTAAGTAATGCTTATTGGG 59.398 38.462 1.63 0.00 39.23 4.12
1912 2070 7.624360 TGTGGTCTTAAGTAATGCTTATTGG 57.376 36.000 1.63 0.00 39.23 3.16
1915 2073 9.561069 CCTATTGTGGTCTTAAGTAATGCTTAT 57.439 33.333 1.63 0.00 39.23 1.73
1916 2074 8.545472 ACCTATTGTGGTCTTAAGTAATGCTTA 58.455 33.333 1.63 0.00 35.65 3.09
1917 2075 7.402862 ACCTATTGTGGTCTTAAGTAATGCTT 58.597 34.615 1.63 0.00 37.16 3.91
1918 2076 6.958767 ACCTATTGTGGTCTTAAGTAATGCT 58.041 36.000 1.63 0.00 34.86 3.79
1931 2089 1.975680 AGAACGTGGACCTATTGTGGT 59.024 47.619 0.00 0.00 44.10 4.16
1932 2090 2.762535 AGAACGTGGACCTATTGTGG 57.237 50.000 0.00 0.00 0.00 4.17
1933 2091 6.737254 AATAAAGAACGTGGACCTATTGTG 57.263 37.500 0.00 0.00 0.00 3.33
1934 2092 7.754851 AAAATAAAGAACGTGGACCTATTGT 57.245 32.000 0.00 0.00 0.00 2.71
1935 2093 7.908601 GCTAAAATAAAGAACGTGGACCTATTG 59.091 37.037 0.00 0.00 0.00 1.90
1936 2094 7.201582 CGCTAAAATAAAGAACGTGGACCTATT 60.202 37.037 0.00 0.00 0.00 1.73
1937 2095 6.257193 CGCTAAAATAAAGAACGTGGACCTAT 59.743 38.462 0.00 0.00 0.00 2.57
1938 2096 5.577945 CGCTAAAATAAAGAACGTGGACCTA 59.422 40.000 0.00 0.00 0.00 3.08
1939 2097 4.390909 CGCTAAAATAAAGAACGTGGACCT 59.609 41.667 0.00 0.00 0.00 3.85
1940 2098 4.436451 CCGCTAAAATAAAGAACGTGGACC 60.436 45.833 0.00 0.00 0.00 4.46
1941 2099 4.436451 CCCGCTAAAATAAAGAACGTGGAC 60.436 45.833 0.00 0.00 0.00 4.02
1942 2100 3.685756 CCCGCTAAAATAAAGAACGTGGA 59.314 43.478 0.00 0.00 0.00 4.02
1943 2101 3.181504 CCCCGCTAAAATAAAGAACGTGG 60.182 47.826 0.00 0.00 0.00 4.94
1944 2102 3.729762 GCCCCGCTAAAATAAAGAACGTG 60.730 47.826 0.00 0.00 0.00 4.49
1945 2103 2.421073 GCCCCGCTAAAATAAAGAACGT 59.579 45.455 0.00 0.00 0.00 3.99
1946 2104 2.420722 TGCCCCGCTAAAATAAAGAACG 59.579 45.455 0.00 0.00 0.00 3.95
1947 2105 4.097286 TGATGCCCCGCTAAAATAAAGAAC 59.903 41.667 0.00 0.00 0.00 3.01
1948 2106 4.097286 GTGATGCCCCGCTAAAATAAAGAA 59.903 41.667 0.00 0.00 0.00 2.52
1949 2107 3.630312 GTGATGCCCCGCTAAAATAAAGA 59.370 43.478 0.00 0.00 0.00 2.52
1950 2108 3.380004 TGTGATGCCCCGCTAAAATAAAG 59.620 43.478 0.00 0.00 0.00 1.85
1951 2109 3.357203 TGTGATGCCCCGCTAAAATAAA 58.643 40.909 0.00 0.00 0.00 1.40
1952 2110 3.006112 TGTGATGCCCCGCTAAAATAA 57.994 42.857 0.00 0.00 0.00 1.40
1953 2111 2.719531 TGTGATGCCCCGCTAAAATA 57.280 45.000 0.00 0.00 0.00 1.40
1954 2112 1.846007 TTGTGATGCCCCGCTAAAAT 58.154 45.000 0.00 0.00 0.00 1.82
1955 2113 1.846007 ATTGTGATGCCCCGCTAAAA 58.154 45.000 0.00 0.00 0.00 1.52
1956 2114 1.476085 CAATTGTGATGCCCCGCTAAA 59.524 47.619 0.00 0.00 0.00 1.85
1957 2115 1.102154 CAATTGTGATGCCCCGCTAA 58.898 50.000 0.00 0.00 0.00 3.09
1958 2116 0.034574 ACAATTGTGATGCCCCGCTA 60.035 50.000 11.07 0.00 0.00 4.26
1959 2117 1.304381 ACAATTGTGATGCCCCGCT 60.304 52.632 11.07 0.00 0.00 5.52
1960 2118 3.287445 ACAATTGTGATGCCCCGC 58.713 55.556 11.07 0.00 0.00 6.13
1978 2136 3.010420 GTGAAGGAGGATAAGTGGCAAC 58.990 50.000 0.00 0.00 0.00 4.17
1979 2137 2.642311 TGTGAAGGAGGATAAGTGGCAA 59.358 45.455 0.00 0.00 0.00 4.52
1980 2138 2.265367 TGTGAAGGAGGATAAGTGGCA 58.735 47.619 0.00 0.00 0.00 4.92
1981 2139 3.567478 ATGTGAAGGAGGATAAGTGGC 57.433 47.619 0.00 0.00 0.00 5.01
1982 2140 6.708054 GTGAATATGTGAAGGAGGATAAGTGG 59.292 42.308 0.00 0.00 0.00 4.00
1983 2141 6.708054 GGTGAATATGTGAAGGAGGATAAGTG 59.292 42.308 0.00 0.00 0.00 3.16
1984 2142 6.463049 CGGTGAATATGTGAAGGAGGATAAGT 60.463 42.308 0.00 0.00 0.00 2.24
1985 2143 5.928839 CGGTGAATATGTGAAGGAGGATAAG 59.071 44.000 0.00 0.00 0.00 1.73
1986 2144 5.221641 CCGGTGAATATGTGAAGGAGGATAA 60.222 44.000 0.00 0.00 0.00 1.75
1987 2145 4.283467 CCGGTGAATATGTGAAGGAGGATA 59.717 45.833 0.00 0.00 0.00 2.59
1988 2146 3.071602 CCGGTGAATATGTGAAGGAGGAT 59.928 47.826 0.00 0.00 0.00 3.24
1989 2147 2.434336 CCGGTGAATATGTGAAGGAGGA 59.566 50.000 0.00 0.00 0.00 3.71
1990 2148 2.838736 CCGGTGAATATGTGAAGGAGG 58.161 52.381 0.00 0.00 0.00 4.30
1991 2149 2.213499 GCCGGTGAATATGTGAAGGAG 58.787 52.381 1.90 0.00 0.00 3.69
1992 2150 1.472552 CGCCGGTGAATATGTGAAGGA 60.473 52.381 10.20 0.00 0.00 3.36
1993 2151 0.937304 CGCCGGTGAATATGTGAAGG 59.063 55.000 10.20 0.00 0.00 3.46
1994 2152 0.937304 CCGCCGGTGAATATGTGAAG 59.063 55.000 18.79 0.00 0.00 3.02
1995 2153 0.250793 ACCGCCGGTGAATATGTGAA 59.749 50.000 18.79 0.00 32.98 3.18
1996 2154 1.901820 ACCGCCGGTGAATATGTGA 59.098 52.632 18.79 0.00 32.98 3.58
1997 2155 4.532490 ACCGCCGGTGAATATGTG 57.468 55.556 18.79 0.00 32.98 3.21
2006 2164 3.319198 ACTGAATCCACCGCCGGT 61.319 61.111 1.02 1.02 35.62 5.28
2007 2165 2.819595 CACTGAATCCACCGCCGG 60.820 66.667 0.00 0.00 0.00 6.13
2008 2166 1.234615 AAACACTGAATCCACCGCCG 61.235 55.000 0.00 0.00 0.00 6.46
2009 2167 1.467342 GTAAACACTGAATCCACCGCC 59.533 52.381 0.00 0.00 0.00 6.13
2010 2168 2.147958 TGTAAACACTGAATCCACCGC 58.852 47.619 0.00 0.00 0.00 5.68
2011 2169 4.822036 TTTGTAAACACTGAATCCACCG 57.178 40.909 0.00 0.00 0.00 4.94
2012 2170 5.751509 GGTTTTTGTAAACACTGAATCCACC 59.248 40.000 0.00 0.00 44.37 4.61
2013 2171 6.334202 TGGTTTTTGTAAACACTGAATCCAC 58.666 36.000 0.00 0.00 44.37 4.02
2014 2172 6.531503 TGGTTTTTGTAAACACTGAATCCA 57.468 33.333 0.00 0.00 44.37 3.41
2015 2173 7.835634 TTTGGTTTTTGTAAACACTGAATCC 57.164 32.000 0.00 0.00 44.37 3.01
2016 2174 8.713271 TGTTTTGGTTTTTGTAAACACTGAATC 58.287 29.630 0.00 0.00 44.37 2.52
2017 2175 8.608844 TGTTTTGGTTTTTGTAAACACTGAAT 57.391 26.923 0.00 0.00 44.37 2.57
2018 2176 8.499162 CATGTTTTGGTTTTTGTAAACACTGAA 58.501 29.630 0.00 0.00 44.37 3.02
2019 2177 7.657761 ACATGTTTTGGTTTTTGTAAACACTGA 59.342 29.630 0.00 0.00 44.37 3.41
2020 2178 7.801752 ACATGTTTTGGTTTTTGTAAACACTG 58.198 30.769 0.00 0.00 44.37 3.66
2021 2179 7.971183 ACATGTTTTGGTTTTTGTAAACACT 57.029 28.000 0.00 0.00 44.37 3.55
2022 2180 8.896826 CAAACATGTTTTGGTTTTTGTAAACAC 58.103 29.630 21.10 0.00 44.37 3.32
2023 2181 8.836413 TCAAACATGTTTTGGTTTTTGTAAACA 58.164 25.926 21.10 0.00 44.37 2.83
2024 2182 9.665264 TTCAAACATGTTTTGGTTTTTGTAAAC 57.335 25.926 21.10 0.00 42.34 2.01
2029 2187 9.448294 CCATATTCAAACATGTTTTGGTTTTTG 57.552 29.630 21.10 8.56 30.99 2.44
2030 2188 9.183368 ACCATATTCAAACATGTTTTGGTTTTT 57.817 25.926 27.57 13.34 36.04 1.94
2031 2189 8.744568 ACCATATTCAAACATGTTTTGGTTTT 57.255 26.923 27.57 13.61 36.04 2.43
2032 2190 8.744568 AACCATATTCAAACATGTTTTGGTTT 57.255 26.923 32.59 23.23 41.84 3.27
2033 2191 9.838339 TTAACCATATTCAAACATGTTTTGGTT 57.162 25.926 36.09 36.09 44.35 3.67
2346 2504 3.704061 CTGAAAAACCTCACAGGGGAAAA 59.296 43.478 0.00 0.00 40.58 2.29
2347 2505 3.053245 TCTGAAAAACCTCACAGGGGAAA 60.053 43.478 0.00 0.00 40.58 3.13
2348 2506 2.512056 TCTGAAAAACCTCACAGGGGAA 59.488 45.455 0.00 0.00 40.58 3.97
2349 2507 2.106511 CTCTGAAAAACCTCACAGGGGA 59.893 50.000 0.00 0.00 40.58 4.81
2350 2508 2.508526 CTCTGAAAAACCTCACAGGGG 58.491 52.381 0.00 0.00 40.58 4.79
2351 2509 2.158608 ACCTCTGAAAAACCTCACAGGG 60.159 50.000 0.00 0.00 40.58 4.45
2352 2510 2.880890 CACCTCTGAAAAACCTCACAGG 59.119 50.000 0.00 0.00 42.49 4.00
2353 2511 3.313526 CACACCTCTGAAAAACCTCACAG 59.686 47.826 0.00 0.00 0.00 3.66
2354 2512 3.278574 CACACCTCTGAAAAACCTCACA 58.721 45.455 0.00 0.00 0.00 3.58
2355 2513 2.033424 GCACACCTCTGAAAAACCTCAC 59.967 50.000 0.00 0.00 0.00 3.51
2356 2514 2.297701 GCACACCTCTGAAAAACCTCA 58.702 47.619 0.00 0.00 0.00 3.86
2357 2515 2.297701 TGCACACCTCTGAAAAACCTC 58.702 47.619 0.00 0.00 0.00 3.85
2358 2516 2.435372 TGCACACCTCTGAAAAACCT 57.565 45.000 0.00 0.00 0.00 3.50
2359 2517 3.733443 AATGCACACCTCTGAAAAACC 57.267 42.857 0.00 0.00 0.00 3.27
2360 2518 4.268405 CACAAATGCACACCTCTGAAAAAC 59.732 41.667 0.00 0.00 0.00 2.43
2361 2519 4.431809 CACAAATGCACACCTCTGAAAAA 58.568 39.130 0.00 0.00 0.00 1.94
2362 2520 3.181477 CCACAAATGCACACCTCTGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
2363 2521 2.361757 CCACAAATGCACACCTCTGAAA 59.638 45.455 0.00 0.00 0.00 2.69
2364 2522 1.955778 CCACAAATGCACACCTCTGAA 59.044 47.619 0.00 0.00 0.00 3.02
2365 2523 1.133823 ACCACAAATGCACACCTCTGA 60.134 47.619 0.00 0.00 0.00 3.27
2366 2524 1.321474 ACCACAAATGCACACCTCTG 58.679 50.000 0.00 0.00 0.00 3.35
2367 2525 2.071778 AACCACAAATGCACACCTCT 57.928 45.000 0.00 0.00 0.00 3.69
2368 2526 3.426159 CGATAACCACAAATGCACACCTC 60.426 47.826 0.00 0.00 0.00 3.85
2369 2527 2.487762 CGATAACCACAAATGCACACCT 59.512 45.455 0.00 0.00 0.00 4.00
2370 2528 2.486203 TCGATAACCACAAATGCACACC 59.514 45.455 0.00 0.00 0.00 4.16
2371 2529 3.822594 TCGATAACCACAAATGCACAC 57.177 42.857 0.00 0.00 0.00 3.82
2372 2530 3.755905 ACATCGATAACCACAAATGCACA 59.244 39.130 0.00 0.00 0.00 4.57
2373 2531 4.355543 ACATCGATAACCACAAATGCAC 57.644 40.909 0.00 0.00 0.00 4.57
2374 2532 5.384063 AAACATCGATAACCACAAATGCA 57.616 34.783 0.00 0.00 0.00 3.96
2375 2533 6.704512 AAAAACATCGATAACCACAAATGC 57.295 33.333 0.00 0.00 0.00 3.56
2396 2554 9.542462 CCCACTAAAATCATATAGAGACGAAAA 57.458 33.333 0.00 0.00 0.00 2.29
2397 2555 8.701895 ACCCACTAAAATCATATAGAGACGAAA 58.298 33.333 0.00 0.00 0.00 3.46
2398 2556 8.141909 CACCCACTAAAATCATATAGAGACGAA 58.858 37.037 0.00 0.00 0.00 3.85
2399 2557 7.658261 CACCCACTAAAATCATATAGAGACGA 58.342 38.462 0.00 0.00 0.00 4.20
2400 2558 6.366332 GCACCCACTAAAATCATATAGAGACG 59.634 42.308 0.00 0.00 0.00 4.18
2401 2559 7.445945 AGCACCCACTAAAATCATATAGAGAC 58.554 38.462 0.00 0.00 0.00 3.36
2402 2560 7.618019 AGCACCCACTAAAATCATATAGAGA 57.382 36.000 0.00 0.00 0.00 3.10
2403 2561 9.950496 ATAAGCACCCACTAAAATCATATAGAG 57.050 33.333 0.00 0.00 0.00 2.43
2407 2565 8.143835 GCAAATAAGCACCCACTAAAATCATAT 58.856 33.333 0.00 0.00 0.00 1.78
2408 2566 7.123397 TGCAAATAAGCACCCACTAAAATCATA 59.877 33.333 0.00 0.00 40.11 2.15
2409 2567 6.070881 TGCAAATAAGCACCCACTAAAATCAT 60.071 34.615 0.00 0.00 40.11 2.45
2410 2568 5.244851 TGCAAATAAGCACCCACTAAAATCA 59.755 36.000 0.00 0.00 40.11 2.57
2411 2569 5.719173 TGCAAATAAGCACCCACTAAAATC 58.281 37.500 0.00 0.00 40.11 2.17
2412 2570 5.736951 TGCAAATAAGCACCCACTAAAAT 57.263 34.783 0.00 0.00 40.11 1.82
2413 2571 5.537300 TTGCAAATAAGCACCCACTAAAA 57.463 34.783 0.00 0.00 45.61 1.52
2414 2572 5.736951 ATTGCAAATAAGCACCCACTAAA 57.263 34.783 1.71 0.00 45.61 1.85
2415 2573 6.183360 CCATATTGCAAATAAGCACCCACTAA 60.183 38.462 1.71 0.00 45.61 2.24
2416 2574 5.301551 CCATATTGCAAATAAGCACCCACTA 59.698 40.000 1.71 0.00 45.61 2.74
2417 2575 4.099881 CCATATTGCAAATAAGCACCCACT 59.900 41.667 1.71 0.00 45.61 4.00
2418 2576 4.099266 TCCATATTGCAAATAAGCACCCAC 59.901 41.667 1.71 0.00 45.61 4.61
2419 2577 4.285020 TCCATATTGCAAATAAGCACCCA 58.715 39.130 1.71 0.00 45.61 4.51
2420 2578 4.935352 TCCATATTGCAAATAAGCACCC 57.065 40.909 1.71 0.00 45.61 4.61
2421 2579 5.221501 ACCATCCATATTGCAAATAAGCACC 60.222 40.000 1.71 0.00 45.61 5.01
2422 2580 5.846203 ACCATCCATATTGCAAATAAGCAC 58.154 37.500 1.71 0.00 45.61 4.40
2423 2581 5.278414 CGACCATCCATATTGCAAATAAGCA 60.278 40.000 1.71 0.00 43.99 3.91
2424 2582 5.156355 CGACCATCCATATTGCAAATAAGC 58.844 41.667 1.71 0.00 0.00 3.09
2425 2583 5.156355 GCGACCATCCATATTGCAAATAAG 58.844 41.667 1.71 0.00 0.00 1.73
2426 2584 4.022416 GGCGACCATCCATATTGCAAATAA 60.022 41.667 1.71 0.00 0.00 1.40
2427 2585 3.505680 GGCGACCATCCATATTGCAAATA 59.494 43.478 1.71 0.00 0.00 1.40
2428 2586 2.297033 GGCGACCATCCATATTGCAAAT 59.703 45.455 1.71 0.00 0.00 2.32
2429 2587 1.680735 GGCGACCATCCATATTGCAAA 59.319 47.619 1.71 0.00 0.00 3.68
2430 2588 1.317613 GGCGACCATCCATATTGCAA 58.682 50.000 0.00 0.00 0.00 4.08
2431 2589 0.884259 CGGCGACCATCCATATTGCA 60.884 55.000 0.00 0.00 0.00 4.08
2432 2590 1.577328 CCGGCGACCATCCATATTGC 61.577 60.000 9.30 0.00 0.00 3.56
2433 2591 0.250295 ACCGGCGACCATCCATATTG 60.250 55.000 9.30 0.00 0.00 1.90
2434 2592 1.001633 GTACCGGCGACCATCCATATT 59.998 52.381 9.30 0.00 0.00 1.28
2435 2593 0.606604 GTACCGGCGACCATCCATAT 59.393 55.000 9.30 0.00 0.00 1.78
2436 2594 0.756070 TGTACCGGCGACCATCCATA 60.756 55.000 9.30 0.00 0.00 2.74
2437 2595 1.618876 TTGTACCGGCGACCATCCAT 61.619 55.000 9.30 0.00 0.00 3.41
2438 2596 1.828461 TTTGTACCGGCGACCATCCA 61.828 55.000 9.30 0.00 0.00 3.41
2439 2597 0.674269 TTTTGTACCGGCGACCATCC 60.674 55.000 9.30 0.00 0.00 3.51
2440 2598 0.725117 CTTTTGTACCGGCGACCATC 59.275 55.000 9.30 0.00 0.00 3.51
2441 2599 0.322322 TCTTTTGTACCGGCGACCAT 59.678 50.000 9.30 0.00 0.00 3.55
2442 2600 0.106335 TTCTTTTGTACCGGCGACCA 59.894 50.000 9.30 0.00 0.00 4.02
2443 2601 1.196127 CTTTCTTTTGTACCGGCGACC 59.804 52.381 9.30 0.00 0.00 4.79
2444 2602 2.096565 GTCTTTCTTTTGTACCGGCGAC 60.097 50.000 9.30 0.00 0.00 5.19
2445 2603 2.137523 GTCTTTCTTTTGTACCGGCGA 58.862 47.619 9.30 0.00 0.00 5.54
2446 2604 1.136446 CGTCTTTCTTTTGTACCGGCG 60.136 52.381 0.00 0.00 0.00 6.46
2447 2605 1.196127 CCGTCTTTCTTTTGTACCGGC 59.804 52.381 0.00 0.00 0.00 6.13
2448 2606 2.477754 GTCCGTCTTTCTTTTGTACCGG 59.522 50.000 0.00 0.00 35.63 5.28
2449 2607 2.477754 GGTCCGTCTTTCTTTTGTACCG 59.522 50.000 0.00 0.00 0.00 4.02
2450 2608 2.477754 CGGTCCGTCTTTCTTTTGTACC 59.522 50.000 2.08 0.00 0.00 3.34
2451 2609 3.060070 CACGGTCCGTCTTTCTTTTGTAC 60.060 47.826 15.67 0.00 38.32 2.90
2452 2610 3.125316 CACGGTCCGTCTTTCTTTTGTA 58.875 45.455 15.67 0.00 38.32 2.41
2453 2611 1.937899 CACGGTCCGTCTTTCTTTTGT 59.062 47.619 15.67 0.00 38.32 2.83
2454 2612 1.333791 GCACGGTCCGTCTTTCTTTTG 60.334 52.381 15.67 0.71 38.32 2.44
2455 2613 0.942252 GCACGGTCCGTCTTTCTTTT 59.058 50.000 15.67 0.00 38.32 2.27
2456 2614 1.219522 CGCACGGTCCGTCTTTCTTT 61.220 55.000 15.67 0.00 38.32 2.52
2457 2615 1.663702 CGCACGGTCCGTCTTTCTT 60.664 57.895 15.67 0.00 38.32 2.52
2458 2616 2.049433 CGCACGGTCCGTCTTTCT 60.049 61.111 15.67 0.00 38.32 2.52
2459 2617 2.807631 TAGCGCACGGTCCGTCTTTC 62.808 60.000 15.67 4.18 38.32 2.62
2460 2618 2.221906 ATAGCGCACGGTCCGTCTTT 62.222 55.000 15.67 1.16 38.32 2.52
2461 2619 2.221906 AATAGCGCACGGTCCGTCTT 62.222 55.000 15.67 2.84 38.32 3.01
2462 2620 2.707849 AATAGCGCACGGTCCGTCT 61.708 57.895 15.67 11.66 38.32 4.18
2463 2621 2.202703 AATAGCGCACGGTCCGTC 60.203 61.111 15.67 8.79 38.32 4.79
2464 2622 2.292794 ATCAATAGCGCACGGTCCGT 62.293 55.000 12.23 12.23 42.36 4.69
2465 2623 1.151777 AATCAATAGCGCACGGTCCG 61.152 55.000 11.47 10.48 0.00 4.79
2466 2624 1.860676 TAATCAATAGCGCACGGTCC 58.139 50.000 11.47 0.00 0.00 4.46
2467 2625 4.684703 ACTTATAATCAATAGCGCACGGTC 59.315 41.667 11.47 0.00 0.00 4.79
2468 2626 4.628074 ACTTATAATCAATAGCGCACGGT 58.372 39.130 11.47 0.00 0.00 4.83
2469 2627 5.591643 AACTTATAATCAATAGCGCACGG 57.408 39.130 11.47 0.00 0.00 4.94
2470 2628 5.336990 GCAAACTTATAATCAATAGCGCACG 59.663 40.000 11.47 0.00 0.00 5.34
2471 2629 6.430451 AGCAAACTTATAATCAATAGCGCAC 58.570 36.000 11.47 0.00 0.00 5.34
2472 2630 6.618287 AGCAAACTTATAATCAATAGCGCA 57.382 33.333 11.47 0.00 0.00 6.09
2473 2631 6.300902 CGAAGCAAACTTATAATCAATAGCGC 59.699 38.462 0.00 0.00 35.82 5.92
2474 2632 7.564128 TCGAAGCAAACTTATAATCAATAGCG 58.436 34.615 0.00 0.00 35.82 4.26
2475 2633 9.716507 TTTCGAAGCAAACTTATAATCAATAGC 57.283 29.630 0.00 0.00 35.82 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.