Multiple sequence alignment - TraesCS6D01G274100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G274100 chr6D 100.000 3380 0 0 1 3380 382590970 382587591 0.000000e+00 6242.0
1 TraesCS6D01G274100 chr6D 83.799 179 28 1 8 185 97811033 97811211 5.800000e-38 169.0
2 TraesCS6D01G274100 chr6A 91.168 2774 114 48 186 2899 524720707 524718005 0.000000e+00 3644.0
3 TraesCS6D01G274100 chr6B 92.451 2570 110 25 297 2832 572394483 572391964 0.000000e+00 3594.0
4 TraesCS6D01G274100 chr6B 82.778 180 28 3 8 185 182379617 182379795 1.260000e-34 158.0
5 TraesCS6D01G274100 chr6B 88.889 99 4 2 185 283 572396650 572396559 7.660000e-22 115.0
6 TraesCS6D01G274100 chr4A 92.258 155 10 2 2209 2361 580734803 580734649 5.680000e-53 219.0
7 TraesCS6D01G274100 chr4A 100.000 28 0 0 3099 3126 598246429 598246456 6.000000e-03 52.8
8 TraesCS6D01G274100 chr1B 87.978 183 21 1 7 188 673608879 673609061 7.350000e-52 215.0
9 TraesCS6D01G274100 chr1B 82.222 180 31 1 7 185 410052836 410052657 1.620000e-33 154.0
10 TraesCS6D01G274100 chr7B 85.990 207 19 7 2150 2348 131377787 131377991 2.640000e-51 213.0
11 TraesCS6D01G274100 chr4D 91.613 155 11 2 2209 2361 21775582 21775428 2.640000e-51 213.0
12 TraesCS6D01G274100 chr4B 91.613 155 11 2 2209 2361 32897836 32897990 2.640000e-51 213.0
13 TraesCS6D01G274100 chr4B 85.000 180 26 1 7 185 172374827 172375006 7.450000e-42 182.0
14 TraesCS6D01G274100 chr7D 88.333 180 15 5 2181 2355 167229373 167229551 9.500000e-51 211.0
15 TraesCS6D01G274100 chr7A 88.333 180 15 5 2181 2355 168813506 168813684 9.500000e-51 211.0
16 TraesCS6D01G274100 chr1D 84.615 182 27 1 7 187 364523702 364523521 2.680000e-41 180.0
17 TraesCS6D01G274100 chrUn 86.875 160 16 4 8 162 80141274 80141115 1.250000e-39 174.0
18 TraesCS6D01G274100 chrUn 86.875 160 16 4 8 162 223954824 223954983 1.250000e-39 174.0
19 TraesCS6D01G274100 chr3D 82.514 183 25 6 8 185 452228371 452228551 1.620000e-33 154.0
20 TraesCS6D01G274100 chr3D 100.000 29 0 0 3099 3127 52798476 52798504 2.000000e-03 54.7
21 TraesCS6D01G274100 chr2B 100.000 29 0 0 3098 3126 38048454 38048482 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G274100 chr6D 382587591 382590970 3379 True 6242.0 6242 100.000 1 3380 1 chr6D.!!$R1 3379
1 TraesCS6D01G274100 chr6A 524718005 524720707 2702 True 3644.0 3644 91.168 186 2899 1 chr6A.!!$R1 2713
2 TraesCS6D01G274100 chr6B 572391964 572396650 4686 True 1854.5 3594 90.670 185 2832 2 chr6B.!!$R1 2647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.383231 GTAGGTATCCCGACGTGGTG 59.617 60.0 0.0 0.0 35.15 4.17 F
416 2482 0.890683 CCACCACAGATTTGGCTTCC 59.109 55.0 0.0 0.0 40.77 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 4228 1.076777 ATGCCCTACACCATGCACC 60.077 57.895 0.00 0.0 36.41 5.01 R
2388 4502 2.358247 CGGTGCAACGGCCTAGTT 60.358 61.111 18.51 0.0 40.13 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.822667 AGAAGTTGACATTATGTTGCATGA 57.177 33.333 0.00 0.00 0.00 3.07
24 25 7.400599 AGAAGTTGACATTATGTTGCATGAT 57.599 32.000 0.00 0.00 0.00 2.45
25 26 7.478322 AGAAGTTGACATTATGTTGCATGATC 58.522 34.615 0.00 0.00 0.00 2.92
26 27 5.813717 AGTTGACATTATGTTGCATGATCG 58.186 37.500 0.00 0.00 0.00 3.69
27 28 5.585844 AGTTGACATTATGTTGCATGATCGA 59.414 36.000 0.00 0.00 0.00 3.59
28 29 5.408204 TGACATTATGTTGCATGATCGAC 57.592 39.130 0.00 0.00 0.00 4.20
29 30 4.025813 TGACATTATGTTGCATGATCGACG 60.026 41.667 0.00 0.00 0.00 5.12
30 31 3.871006 ACATTATGTTGCATGATCGACGT 59.129 39.130 0.00 0.00 0.00 4.34
31 32 3.923827 TTATGTTGCATGATCGACGTG 57.076 42.857 0.00 0.00 38.43 4.49
40 41 4.457433 CATGATCGACGTGCATGTATTT 57.543 40.909 12.53 0.00 35.78 1.40
41 42 5.574815 CATGATCGACGTGCATGTATTTA 57.425 39.130 12.53 0.00 35.78 1.40
42 43 5.973158 CATGATCGACGTGCATGTATTTAA 58.027 37.500 12.53 0.00 35.78 1.52
43 44 6.593072 CATGATCGACGTGCATGTATTTAAT 58.407 36.000 12.53 0.97 35.78 1.40
44 45 5.973158 TGATCGACGTGCATGTATTTAATG 58.027 37.500 12.53 0.00 0.00 1.90
45 46 4.787381 TCGACGTGCATGTATTTAATGG 57.213 40.909 12.53 0.00 0.00 3.16
46 47 4.434520 TCGACGTGCATGTATTTAATGGA 58.565 39.130 12.53 0.00 0.00 3.41
47 48 5.053811 TCGACGTGCATGTATTTAATGGAT 58.946 37.500 12.53 0.00 0.00 3.41
48 49 5.525745 TCGACGTGCATGTATTTAATGGATT 59.474 36.000 12.53 0.00 0.00 3.01
49 50 6.037720 TCGACGTGCATGTATTTAATGGATTT 59.962 34.615 12.53 0.00 0.00 2.17
50 51 7.224949 TCGACGTGCATGTATTTAATGGATTTA 59.775 33.333 12.53 0.00 0.00 1.40
51 52 7.853437 CGACGTGCATGTATTTAATGGATTTAA 59.147 33.333 12.53 0.00 0.00 1.52
52 53 9.169468 GACGTGCATGTATTTAATGGATTTAAG 57.831 33.333 12.53 0.00 31.57 1.85
53 54 8.898761 ACGTGCATGTATTTAATGGATTTAAGA 58.101 29.630 10.57 0.00 31.57 2.10
54 55 9.385902 CGTGCATGTATTTAATGGATTTAAGAG 57.614 33.333 0.00 0.00 31.57 2.85
57 58 9.899226 GCATGTATTTAATGGATTTAAGAGTCC 57.101 33.333 0.00 0.00 31.57 3.85
59 60 8.671384 TGTATTTAATGGATTTAAGAGTCCGG 57.329 34.615 0.00 0.00 37.32 5.14
60 61 8.487848 TGTATTTAATGGATTTAAGAGTCCGGA 58.512 33.333 0.00 0.00 37.32 5.14
61 62 9.503399 GTATTTAATGGATTTAAGAGTCCGGAT 57.497 33.333 7.81 0.00 37.32 4.18
62 63 8.996651 ATTTAATGGATTTAAGAGTCCGGATT 57.003 30.769 7.81 1.79 37.32 3.01
63 64 8.817092 TTTAATGGATTTAAGAGTCCGGATTT 57.183 30.769 7.81 5.71 37.32 2.17
64 65 9.908747 TTTAATGGATTTAAGAGTCCGGATTTA 57.091 29.630 7.81 4.63 37.32 1.40
65 66 9.908747 TTAATGGATTTAAGAGTCCGGATTTAA 57.091 29.630 7.81 10.77 37.32 1.52
66 67 8.451908 AATGGATTTAAGAGTCCGGATTTAAG 57.548 34.615 7.81 0.00 37.32 1.85
67 68 7.190335 TGGATTTAAGAGTCCGGATTTAAGA 57.810 36.000 7.81 5.66 37.32 2.10
68 69 7.802117 TGGATTTAAGAGTCCGGATTTAAGAT 58.198 34.615 7.81 9.52 37.32 2.40
69 70 8.930527 TGGATTTAAGAGTCCGGATTTAAGATA 58.069 33.333 7.81 0.00 37.32 1.98
70 71 9.945904 GGATTTAAGAGTCCGGATTTAAGATAT 57.054 33.333 7.81 4.72 0.00 1.63
73 74 9.542462 TTTAAGAGTCCGGATTTAAGATATGTG 57.458 33.333 7.81 0.00 0.00 3.21
74 75 6.102897 AGAGTCCGGATTTAAGATATGTGG 57.897 41.667 7.81 0.00 0.00 4.17
75 76 5.839063 AGAGTCCGGATTTAAGATATGTGGA 59.161 40.000 7.81 0.00 0.00 4.02
76 77 6.498651 AGAGTCCGGATTTAAGATATGTGGAT 59.501 38.462 7.81 0.00 0.00 3.41
77 78 6.467677 AGTCCGGATTTAAGATATGTGGATG 58.532 40.000 7.81 0.00 0.00 3.51
78 79 5.122396 GTCCGGATTTAAGATATGTGGATGC 59.878 44.000 7.81 0.00 0.00 3.91
79 80 5.003160 CCGGATTTAAGATATGTGGATGCA 58.997 41.667 0.00 0.00 0.00 3.96
80 81 5.106555 CCGGATTTAAGATATGTGGATGCAC 60.107 44.000 10.90 10.90 0.00 4.57
81 82 5.389830 CGGATTTAAGATATGTGGATGCACG 60.390 44.000 13.03 0.00 0.00 5.34
82 83 5.106555 GGATTTAAGATATGTGGATGCACGG 60.107 44.000 13.03 0.00 0.00 4.94
83 84 4.681074 TTAAGATATGTGGATGCACGGA 57.319 40.909 13.03 3.11 0.00 4.69
84 85 3.558931 AAGATATGTGGATGCACGGAA 57.441 42.857 13.03 0.72 0.00 4.30
85 86 3.117491 AGATATGTGGATGCACGGAAG 57.883 47.619 13.03 0.00 0.00 3.46
86 87 2.700371 AGATATGTGGATGCACGGAAGA 59.300 45.455 13.03 0.00 0.00 2.87
87 88 3.134623 AGATATGTGGATGCACGGAAGAA 59.865 43.478 13.03 0.00 0.00 2.52
88 89 2.198827 ATGTGGATGCACGGAAGAAA 57.801 45.000 13.03 0.00 0.00 2.52
89 90 1.974265 TGTGGATGCACGGAAGAAAA 58.026 45.000 13.03 0.00 0.00 2.29
90 91 2.302260 TGTGGATGCACGGAAGAAAAA 58.698 42.857 13.03 0.00 0.00 1.94
106 107 1.530323 AAAAATGAAGGTCCGTCCGG 58.470 50.000 0.00 0.00 41.99 5.14
107 108 0.688487 AAAATGAAGGTCCGTCCGGA 59.312 50.000 0.00 0.00 42.90 5.14
152 153 2.879907 CCGCAGGCATTTGAGTGG 59.120 61.111 0.00 0.00 46.14 4.00
153 154 1.973281 CCGCAGGCATTTGAGTGGT 60.973 57.895 0.00 0.00 46.14 4.16
154 155 1.503542 CGCAGGCATTTGAGTGGTC 59.496 57.895 0.00 0.00 0.00 4.02
155 156 1.503542 GCAGGCATTTGAGTGGTCG 59.496 57.895 0.00 0.00 0.00 4.79
156 157 1.237285 GCAGGCATTTGAGTGGTCGT 61.237 55.000 0.00 0.00 0.00 4.34
157 158 1.943968 GCAGGCATTTGAGTGGTCGTA 60.944 52.381 0.00 0.00 0.00 3.43
158 159 2.632377 CAGGCATTTGAGTGGTCGTAT 58.368 47.619 0.00 0.00 0.00 3.06
159 160 3.009723 CAGGCATTTGAGTGGTCGTATT 58.990 45.455 0.00 0.00 0.00 1.89
160 161 3.440173 CAGGCATTTGAGTGGTCGTATTT 59.560 43.478 0.00 0.00 0.00 1.40
161 162 3.440173 AGGCATTTGAGTGGTCGTATTTG 59.560 43.478 0.00 0.00 0.00 2.32
162 163 3.171277 GCATTTGAGTGGTCGTATTTGC 58.829 45.455 0.00 0.00 0.00 3.68
163 164 3.758300 CATTTGAGTGGTCGTATTTGCC 58.242 45.455 0.00 0.00 0.00 4.52
164 165 2.552599 TTGAGTGGTCGTATTTGCCA 57.447 45.000 0.00 0.00 0.00 4.92
165 166 2.552599 TGAGTGGTCGTATTTGCCAA 57.447 45.000 0.00 0.00 33.66 4.52
166 167 2.422597 TGAGTGGTCGTATTTGCCAAG 58.577 47.619 0.00 0.00 33.66 3.61
167 168 2.224426 TGAGTGGTCGTATTTGCCAAGT 60.224 45.455 0.00 0.00 33.66 3.16
168 169 2.415512 GAGTGGTCGTATTTGCCAAGTC 59.584 50.000 0.00 0.00 33.66 3.01
169 170 1.467342 GTGGTCGTATTTGCCAAGTCC 59.533 52.381 0.00 0.00 33.66 3.85
170 171 0.725117 GGTCGTATTTGCCAAGTCCG 59.275 55.000 0.00 0.00 0.00 4.79
171 172 0.725117 GTCGTATTTGCCAAGTCCGG 59.275 55.000 0.00 0.00 0.00 5.14
181 182 1.017387 CCAAGTCCGGCTTTAGATGC 58.983 55.000 8.21 0.00 34.69 3.91
182 183 1.407437 CCAAGTCCGGCTTTAGATGCT 60.407 52.381 8.21 0.00 34.69 3.79
183 184 1.936547 CAAGTCCGGCTTTAGATGCTC 59.063 52.381 8.21 0.00 34.69 4.26
218 219 7.358066 CCGAATATGACAGATTTCAGATTTGG 58.642 38.462 10.79 10.79 45.70 3.28
229 230 7.277098 CAGATTTCAGATTTGGTATTTTGGCTG 59.723 37.037 0.00 0.00 0.00 4.85
244 245 2.034124 TGGCTGGTAACGTAGGTATCC 58.966 52.381 0.00 0.00 42.51 2.59
254 255 0.383231 GTAGGTATCCCGACGTGGTG 59.617 60.000 0.00 0.00 35.15 4.17
300 2363 3.066900 TCTGACTCTCTTATTACGCCTGC 59.933 47.826 0.00 0.00 0.00 4.85
314 2377 4.622701 ACGCCTGCATTATTTCTTCTTC 57.377 40.909 0.00 0.00 0.00 2.87
376 2439 1.936547 CCTCGAGCAGGCTGTATTTTC 59.063 52.381 17.16 5.81 34.56 2.29
391 2454 3.864789 ATTTTCGCAGGAGGATGGTAT 57.135 42.857 0.00 0.00 0.00 2.73
416 2482 0.890683 CCACCACAGATTTGGCTTCC 59.109 55.000 0.00 0.00 40.77 3.46
432 2498 3.193479 GGCTTCCACTTTACAGGGAAATG 59.807 47.826 0.00 0.00 40.00 2.32
451 2517 3.904800 TGGCTGGAGTTTATCATTCGA 57.095 42.857 0.00 0.00 0.00 3.71
514 2584 4.439563 CCAGTACGGAATTTAAATGGCACC 60.440 45.833 0.39 3.22 36.56 5.01
516 2586 3.866883 ACGGAATTTAAATGGCACCAG 57.133 42.857 0.39 3.84 0.00 4.00
580 2651 2.736192 CGTTGGTGCAATTTCATTTCCC 59.264 45.455 0.00 0.00 0.00 3.97
590 2661 5.817296 GCAATTTCATTTCCCCATTTCTACC 59.183 40.000 0.00 0.00 0.00 3.18
591 2662 6.352137 GCAATTTCATTTCCCCATTTCTACCT 60.352 38.462 0.00 0.00 0.00 3.08
642 2716 6.374417 ACAGGATAGGACTTTTTCAGCTAA 57.626 37.500 0.00 0.00 0.00 3.09
654 2738 1.517257 CAGCTAACCAGGCTCGTCG 60.517 63.158 0.00 0.00 38.03 5.12
1305 3419 4.436998 CCGAAGAGGAAGGCGCGT 62.437 66.667 8.43 0.00 45.00 6.01
1452 3566 3.118454 CGCGTGCCGGTCTTTGAT 61.118 61.111 1.90 0.00 0.00 2.57
1608 3722 3.387947 AGTTTCGGCCCGACGGAT 61.388 61.111 17.49 0.00 34.89 4.18
1728 3842 3.680786 CTCATATCGCCGCCGGGA 61.681 66.667 4.77 0.14 34.06 5.14
1926 4040 1.194547 GACGATGCGCAGTTCTTGAAA 59.805 47.619 18.32 0.00 0.00 2.69
2099 4213 8.847196 TCACTATATGCTCGATACAGTTAACTT 58.153 33.333 5.07 0.62 0.00 2.66
2100 4214 8.906693 CACTATATGCTCGATACAGTTAACTTG 58.093 37.037 5.07 4.54 0.00 3.16
2101 4215 8.630917 ACTATATGCTCGATACAGTTAACTTGT 58.369 33.333 5.07 10.21 0.00 3.16
2106 4220 9.982651 ATGCTCGATACAGTTAACTTGTATATT 57.017 29.630 20.84 8.83 0.00 1.28
2172 4286 4.899239 GGAGGACGGCATGGCGAG 62.899 72.222 43.12 19.85 0.00 5.03
2387 4501 2.490217 CGTCACCTGACCTAGCCG 59.510 66.667 0.00 0.00 41.86 5.52
2388 4502 2.044555 CGTCACCTGACCTAGCCGA 61.045 63.158 0.00 0.00 41.86 5.54
2389 4503 1.592400 CGTCACCTGACCTAGCCGAA 61.592 60.000 0.00 0.00 41.86 4.30
2390 4504 0.108756 GTCACCTGACCTAGCCGAAC 60.109 60.000 0.00 0.00 39.07 3.95
2391 4505 0.251653 TCACCTGACCTAGCCGAACT 60.252 55.000 0.00 0.00 0.00 3.01
2454 4568 2.002963 GATTGCGTCGTGCTCGTCTG 62.003 60.000 8.17 0.85 46.63 3.51
2462 4576 1.283181 GTGCTCGTCTGAGTCACGT 59.717 57.895 3.41 0.00 44.48 4.49
2467 4581 0.109735 TCGTCTGAGTCACGTGCATC 60.110 55.000 11.67 11.60 38.45 3.91
2498 4613 1.271102 ACACACACCCACACACAAAAC 59.729 47.619 0.00 0.00 0.00 2.43
2551 4668 4.271696 TGTTCGTCAGGAATGATTGTCT 57.728 40.909 0.00 0.00 36.92 3.41
2594 4713 3.322466 CCGGCAGTGGAGAAGGGT 61.322 66.667 0.00 0.00 0.00 4.34
2676 4797 3.120792 GGTTTTTGCGACCTTTTTCTCC 58.879 45.455 0.00 0.00 34.27 3.71
2725 4846 0.391130 TAGGTGGTTCTGCGTGCATC 60.391 55.000 0.00 0.00 0.00 3.91
2828 4949 3.702548 TGTACCGTGTATATCAGCAGGTT 59.297 43.478 0.00 0.00 0.00 3.50
2832 4953 5.135383 ACCGTGTATATCAGCAGGTTAGTA 58.865 41.667 0.00 0.00 0.00 1.82
2833 4954 5.009410 ACCGTGTATATCAGCAGGTTAGTAC 59.991 44.000 0.00 0.00 0.00 2.73
2834 4955 5.009310 CCGTGTATATCAGCAGGTTAGTACA 59.991 44.000 0.00 0.00 0.00 2.90
2835 4956 6.294564 CCGTGTATATCAGCAGGTTAGTACAT 60.295 42.308 0.00 0.00 0.00 2.29
2836 4957 7.094506 CCGTGTATATCAGCAGGTTAGTACATA 60.095 40.741 0.00 0.00 0.00 2.29
2856 4985 9.367444 GTACATAATATTCCCTCCGTCAATAAG 57.633 37.037 0.00 0.00 0.00 1.73
2864 4993 3.512680 CCTCCGTCAATAAGTGTCACTC 58.487 50.000 5.82 0.00 0.00 3.51
2865 4994 3.193691 CCTCCGTCAATAAGTGTCACTCT 59.806 47.826 5.82 0.00 0.00 3.24
2866 4995 4.169508 CTCCGTCAATAAGTGTCACTCTG 58.830 47.826 5.82 4.79 0.00 3.35
2867 4996 3.824443 TCCGTCAATAAGTGTCACTCTGA 59.176 43.478 5.82 7.07 0.00 3.27
2899 5028 8.754991 TTTTTAAGGGAAATAAGTGTCACTGA 57.245 30.769 6.18 0.00 0.00 3.41
2900 5029 7.739498 TTTAAGGGAAATAAGTGTCACTGAC 57.261 36.000 6.18 1.86 0.00 3.51
2901 5030 5.568620 AAGGGAAATAAGTGTCACTGACT 57.431 39.130 6.18 0.00 33.15 3.41
2902 5031 5.568620 AGGGAAATAAGTGTCACTGACTT 57.431 39.130 6.18 0.00 37.43 3.01
2903 5032 6.681729 AGGGAAATAAGTGTCACTGACTTA 57.318 37.500 6.18 2.57 39.60 2.24
2904 5033 7.074653 AGGGAAATAAGTGTCACTGACTTAA 57.925 36.000 6.18 0.00 38.93 1.85
2905 5034 7.690256 AGGGAAATAAGTGTCACTGACTTAAT 58.310 34.615 6.18 0.00 38.93 1.40
2906 5035 8.822805 AGGGAAATAAGTGTCACTGACTTAATA 58.177 33.333 6.18 0.00 38.93 0.98
2907 5036 8.880750 GGGAAATAAGTGTCACTGACTTAATAC 58.119 37.037 6.18 0.16 38.93 1.89
2908 5037 9.431887 GGAAATAAGTGTCACTGACTTAATACA 57.568 33.333 6.18 0.00 38.93 2.29
2912 5041 9.998106 ATAAGTGTCACTGACTTAATACAAAGT 57.002 29.630 6.18 0.00 42.36 2.66
2913 5042 8.732746 AAGTGTCACTGACTTAATACAAAGTT 57.267 30.769 6.18 0.00 39.78 2.66
2914 5043 8.142994 AGTGTCACTGACTTAATACAAAGTTG 57.857 34.615 4.21 0.00 39.78 3.16
2915 5044 7.769044 AGTGTCACTGACTTAATACAAAGTTGT 59.231 33.333 4.21 1.75 39.78 3.32
2916 5045 9.037737 GTGTCACTGACTTAATACAAAGTTGTA 57.962 33.333 10.54 6.37 39.78 2.41
2917 5046 9.037737 TGTCACTGACTTAATACAAAGTTGTAC 57.962 33.333 10.54 0.00 39.78 2.90
2918 5047 9.257651 GTCACTGACTTAATACAAAGTTGTACT 57.742 33.333 6.05 0.00 45.47 2.73
2929 5058 8.853469 ATACAAAGTTGTACTAGATTAGCGAC 57.147 34.615 6.05 0.00 45.47 5.19
2930 5059 6.684686 ACAAAGTTGTACTAGATTAGCGACA 58.315 36.000 0.00 0.00 40.16 4.35
2931 5060 6.585322 ACAAAGTTGTACTAGATTAGCGACAC 59.415 38.462 0.00 0.00 40.16 3.67
2932 5061 6.512342 AAGTTGTACTAGATTAGCGACACT 57.488 37.500 0.00 0.00 0.00 3.55
2933 5062 6.512342 AGTTGTACTAGATTAGCGACACTT 57.488 37.500 0.00 0.00 0.00 3.16
2934 5063 7.621428 AGTTGTACTAGATTAGCGACACTTA 57.379 36.000 0.00 0.00 0.00 2.24
2935 5064 8.223177 AGTTGTACTAGATTAGCGACACTTAT 57.777 34.615 0.00 0.00 0.00 1.73
2936 5065 8.684520 AGTTGTACTAGATTAGCGACACTTATT 58.315 33.333 0.00 0.00 0.00 1.40
2937 5066 9.298774 GTTGTACTAGATTAGCGACACTTATTT 57.701 33.333 0.00 0.00 0.00 1.40
2970 5099 2.933495 CATGGACAATGGCACTCAAG 57.067 50.000 0.00 0.00 32.10 3.02
2971 5100 2.439409 CATGGACAATGGCACTCAAGA 58.561 47.619 0.00 0.00 32.10 3.02
2972 5101 1.896220 TGGACAATGGCACTCAAGAC 58.104 50.000 0.00 0.00 0.00 3.01
2973 5102 1.142667 TGGACAATGGCACTCAAGACA 59.857 47.619 0.00 0.00 0.00 3.41
2974 5103 2.224843 TGGACAATGGCACTCAAGACAT 60.225 45.455 0.00 0.00 0.00 3.06
2975 5104 3.008923 TGGACAATGGCACTCAAGACATA 59.991 43.478 0.00 0.00 0.00 2.29
2976 5105 4.202441 GGACAATGGCACTCAAGACATAT 58.798 43.478 0.00 0.00 0.00 1.78
2977 5106 4.641989 GGACAATGGCACTCAAGACATATT 59.358 41.667 0.00 0.00 0.00 1.28
2978 5107 5.126061 GGACAATGGCACTCAAGACATATTT 59.874 40.000 0.00 0.00 0.00 1.40
2979 5108 6.350445 GGACAATGGCACTCAAGACATATTTT 60.350 38.462 0.00 0.00 0.00 1.82
2980 5109 6.996509 ACAATGGCACTCAAGACATATTTTT 58.003 32.000 0.00 0.00 0.00 1.94
2981 5110 8.121305 ACAATGGCACTCAAGACATATTTTTA 57.879 30.769 0.00 0.00 0.00 1.52
2982 5111 8.752187 ACAATGGCACTCAAGACATATTTTTAT 58.248 29.630 0.00 0.00 0.00 1.40
2985 5114 9.851686 ATGGCACTCAAGACATATTTTTATAGA 57.148 29.630 0.00 0.00 0.00 1.98
2986 5115 9.679661 TGGCACTCAAGACATATTTTTATAGAA 57.320 29.630 0.00 0.00 0.00 2.10
2994 5123 9.920946 AAGACATATTTTTATAGAAGAAGCCCA 57.079 29.630 0.00 0.00 0.00 5.36
2999 5128 7.830099 ATTTTTATAGAAGAAGCCCATCTGG 57.170 36.000 0.00 0.00 37.09 3.86
3013 5142 4.760530 CCATCTGGGTGAGTTATCAGAA 57.239 45.455 0.00 0.00 39.33 3.02
3014 5143 5.102953 CCATCTGGGTGAGTTATCAGAAA 57.897 43.478 0.00 0.00 39.33 2.52
3015 5144 5.688807 CCATCTGGGTGAGTTATCAGAAAT 58.311 41.667 0.00 0.00 39.33 2.17
3016 5145 6.125029 CCATCTGGGTGAGTTATCAGAAATT 58.875 40.000 0.00 0.00 39.33 1.82
3017 5146 6.261826 CCATCTGGGTGAGTTATCAGAAATTC 59.738 42.308 0.00 0.00 39.33 2.17
3018 5147 5.419542 TCTGGGTGAGTTATCAGAAATTCG 58.580 41.667 0.00 0.00 35.66 3.34
3019 5148 3.938963 TGGGTGAGTTATCAGAAATTCGC 59.061 43.478 0.00 0.00 35.66 4.70
3020 5149 4.192317 GGGTGAGTTATCAGAAATTCGCT 58.808 43.478 0.00 0.00 35.66 4.93
3021 5150 4.636206 GGGTGAGTTATCAGAAATTCGCTT 59.364 41.667 0.00 0.00 35.66 4.68
3022 5151 5.220681 GGGTGAGTTATCAGAAATTCGCTTC 60.221 44.000 0.00 0.00 35.66 3.86
3023 5152 5.220681 GGTGAGTTATCAGAAATTCGCTTCC 60.221 44.000 0.00 0.00 35.66 3.46
3024 5153 4.566759 TGAGTTATCAGAAATTCGCTTCCG 59.433 41.667 0.00 0.00 0.00 4.30
3025 5154 4.755411 AGTTATCAGAAATTCGCTTCCGA 58.245 39.130 0.00 0.00 42.66 4.55
3026 5155 4.567159 AGTTATCAGAAATTCGCTTCCGAC 59.433 41.667 0.00 0.00 44.30 4.79
3027 5156 1.346365 TCAGAAATTCGCTTCCGACG 58.654 50.000 0.00 0.00 44.30 5.12
3028 5157 0.370273 CAGAAATTCGCTTCCGACGG 59.630 55.000 7.84 7.84 44.30 4.79
3029 5158 0.739813 AGAAATTCGCTTCCGACGGG 60.740 55.000 15.25 0.00 44.30 5.28
3030 5159 0.738412 GAAATTCGCTTCCGACGGGA 60.738 55.000 15.25 3.72 44.30 5.14
3031 5160 0.107848 AAATTCGCTTCCGACGGGAT 60.108 50.000 15.25 0.00 44.30 3.85
3032 5161 0.107848 AATTCGCTTCCGACGGGATT 60.108 50.000 15.25 0.00 44.30 3.01
3033 5162 0.810031 ATTCGCTTCCGACGGGATTG 60.810 55.000 15.25 0.18 44.30 2.67
3034 5163 1.879737 TTCGCTTCCGACGGGATTGA 61.880 55.000 15.25 2.98 44.30 2.57
3035 5164 1.447140 CGCTTCCGACGGGATTGAA 60.447 57.895 15.25 0.00 43.41 2.69
3036 5165 1.693083 CGCTTCCGACGGGATTGAAC 61.693 60.000 15.25 0.00 43.41 3.18
3037 5166 1.366854 GCTTCCGACGGGATTGAACC 61.367 60.000 15.25 0.00 43.41 3.62
3038 5167 0.743345 CTTCCGACGGGATTGAACCC 60.743 60.000 15.25 0.00 43.41 4.11
3044 5173 2.440247 GGGATTGAACCCTGGGCG 60.440 66.667 14.08 0.00 45.90 6.13
3045 5174 3.140814 GGATTGAACCCTGGGCGC 61.141 66.667 14.08 0.00 0.00 6.53
3046 5175 2.361104 GATTGAACCCTGGGCGCA 60.361 61.111 14.08 8.45 0.00 6.09
3047 5176 2.361610 ATTGAACCCTGGGCGCAG 60.362 61.111 23.12 23.12 0.00 5.18
3048 5177 3.944250 ATTGAACCCTGGGCGCAGG 62.944 63.158 36.42 36.42 41.92 4.85
3050 5179 4.115199 GAACCCTGGGCGCAGGAT 62.115 66.667 42.48 32.01 45.00 3.24
3051 5180 2.690881 AACCCTGGGCGCAGGATA 60.691 61.111 42.48 4.35 45.00 2.59
3052 5181 2.942648 GAACCCTGGGCGCAGGATAC 62.943 65.000 42.48 29.01 45.00 2.24
3053 5182 4.609018 CCCTGGGCGCAGGATACG 62.609 72.222 42.48 26.02 45.00 3.06
3060 5189 2.184322 CGCAGGATACGCCACTGT 59.816 61.111 0.00 0.00 46.39 3.55
3061 5190 2.167219 CGCAGGATACGCCACTGTG 61.167 63.158 0.00 0.00 46.39 3.66
3062 5191 1.079127 GCAGGATACGCCACTGTGT 60.079 57.895 7.08 0.00 46.39 3.72
3063 5192 0.673644 GCAGGATACGCCACTGTGTT 60.674 55.000 7.08 0.00 46.39 3.32
3064 5193 1.808411 CAGGATACGCCACTGTGTTT 58.192 50.000 7.08 0.00 46.39 2.83
3065 5194 1.732259 CAGGATACGCCACTGTGTTTC 59.268 52.381 7.08 0.00 46.39 2.78
3066 5195 1.084289 GGATACGCCACTGTGTTTCC 58.916 55.000 7.08 0.00 42.96 3.13
3067 5196 1.338769 GGATACGCCACTGTGTTTCCT 60.339 52.381 7.08 0.00 44.75 3.36
3068 5197 2.423577 GATACGCCACTGTGTTTCCTT 58.576 47.619 7.08 0.00 36.42 3.36
3069 5198 1.588674 TACGCCACTGTGTTTCCTTG 58.411 50.000 7.08 0.00 36.42 3.61
3070 5199 1.008538 CGCCACTGTGTTTCCTTGC 60.009 57.895 7.08 0.13 0.00 4.01
3071 5200 1.363807 GCCACTGTGTTTCCTTGCC 59.636 57.895 7.08 0.00 0.00 4.52
3072 5201 1.391157 GCCACTGTGTTTCCTTGCCA 61.391 55.000 7.08 0.00 0.00 4.92
3073 5202 0.385390 CCACTGTGTTTCCTTGCCAC 59.615 55.000 7.08 0.00 0.00 5.01
3074 5203 1.392589 CACTGTGTTTCCTTGCCACT 58.607 50.000 0.00 0.00 0.00 4.00
3075 5204 2.571212 CACTGTGTTTCCTTGCCACTA 58.429 47.619 0.00 0.00 0.00 2.74
3076 5205 2.549754 CACTGTGTTTCCTTGCCACTAG 59.450 50.000 0.00 0.00 0.00 2.57
3077 5206 2.154462 CTGTGTTTCCTTGCCACTAGG 58.846 52.381 0.00 0.00 38.23 3.02
3092 5221 5.283457 CCACTAGGCTTATTGCTAGTTCT 57.717 43.478 0.00 0.00 42.39 3.01
3093 5222 5.293560 CCACTAGGCTTATTGCTAGTTCTC 58.706 45.833 0.00 0.00 42.39 2.87
3094 5223 5.069781 CCACTAGGCTTATTGCTAGTTCTCT 59.930 44.000 0.00 0.00 42.39 3.10
3095 5224 6.265649 CCACTAGGCTTATTGCTAGTTCTCTA 59.734 42.308 0.00 0.00 42.39 2.43
3096 5225 7.367285 CACTAGGCTTATTGCTAGTTCTCTAG 58.633 42.308 0.00 0.00 44.55 2.43
3110 5239 6.952935 AGTTCTCTAGCGACACTTATTTTG 57.047 37.500 0.00 0.00 0.00 2.44
3111 5240 6.688578 AGTTCTCTAGCGACACTTATTTTGA 58.311 36.000 0.00 0.00 0.00 2.69
3112 5241 7.152645 AGTTCTCTAGCGACACTTATTTTGAA 58.847 34.615 0.00 0.00 0.00 2.69
3113 5242 7.656137 AGTTCTCTAGCGACACTTATTTTGAAA 59.344 33.333 0.00 0.00 0.00 2.69
3114 5243 7.347508 TCTCTAGCGACACTTATTTTGAAAC 57.652 36.000 0.00 0.00 0.00 2.78
3115 5244 6.089016 TCTCTAGCGACACTTATTTTGAAACG 59.911 38.462 0.00 0.00 0.00 3.60
3116 5245 5.921976 TCTAGCGACACTTATTTTGAAACGA 59.078 36.000 0.00 0.00 0.00 3.85
3117 5246 5.412526 AGCGACACTTATTTTGAAACGAA 57.587 34.783 0.00 0.00 0.00 3.85
3118 5247 5.440685 AGCGACACTTATTTTGAAACGAAG 58.559 37.500 0.00 0.00 0.00 3.79
3119 5248 4.611366 GCGACACTTATTTTGAAACGAAGG 59.389 41.667 0.00 0.00 0.00 3.46
3120 5249 5.559417 GCGACACTTATTTTGAAACGAAGGA 60.559 40.000 0.00 0.00 0.00 3.36
3121 5250 6.423862 CGACACTTATTTTGAAACGAAGGAA 58.576 36.000 0.00 0.00 0.00 3.36
3122 5251 6.573725 CGACACTTATTTTGAAACGAAGGAAG 59.426 38.462 0.00 0.00 0.00 3.46
3123 5252 7.329588 ACACTTATTTTGAAACGAAGGAAGT 57.670 32.000 0.00 0.00 0.00 3.01
3124 5253 8.441312 ACACTTATTTTGAAACGAAGGAAGTA 57.559 30.769 0.00 0.00 0.00 2.24
3125 5254 9.063615 ACACTTATTTTGAAACGAAGGAAGTAT 57.936 29.630 0.00 0.00 0.00 2.12
3129 5258 9.997482 TTATTTTGAAACGAAGGAAGTATATGC 57.003 29.630 0.00 0.00 0.00 3.14
3130 5259 7.441890 TTTTGAAACGAAGGAAGTATATGCA 57.558 32.000 0.00 0.00 0.00 3.96
3131 5260 7.441890 TTTGAAACGAAGGAAGTATATGCAA 57.558 32.000 0.00 0.00 0.00 4.08
3132 5261 7.441890 TTGAAACGAAGGAAGTATATGCAAA 57.558 32.000 0.00 0.00 0.00 3.68
3133 5262 7.441890 TGAAACGAAGGAAGTATATGCAAAA 57.558 32.000 0.00 0.00 0.00 2.44
3134 5263 7.526608 TGAAACGAAGGAAGTATATGCAAAAG 58.473 34.615 0.00 0.00 0.00 2.27
3135 5264 5.485662 ACGAAGGAAGTATATGCAAAAGC 57.514 39.130 0.00 0.00 0.00 3.51
3136 5265 5.186198 ACGAAGGAAGTATATGCAAAAGCT 58.814 37.500 0.00 0.00 0.00 3.74
3137 5266 5.648092 ACGAAGGAAGTATATGCAAAAGCTT 59.352 36.000 0.00 0.00 0.00 3.74
3138 5267 6.151144 ACGAAGGAAGTATATGCAAAAGCTTT 59.849 34.615 5.69 5.69 0.00 3.51
3139 5268 7.335924 ACGAAGGAAGTATATGCAAAAGCTTTA 59.664 33.333 13.10 0.00 0.00 1.85
3140 5269 8.181573 CGAAGGAAGTATATGCAAAAGCTTTAA 58.818 33.333 13.10 1.70 0.00 1.52
3153 5282 8.772705 TGCAAAAGCTTTAATTTTTGATAGTGG 58.227 29.630 13.10 0.00 43.51 4.00
3154 5283 8.773645 GCAAAAGCTTTAATTTTTGATAGTGGT 58.226 29.630 13.10 0.00 43.51 4.16
3235 5364 5.803552 TGACAATCAGATTACCATGTGACA 58.196 37.500 0.00 0.00 35.59 3.58
3236 5365 6.237154 TGACAATCAGATTACCATGTGACAA 58.763 36.000 0.00 0.00 35.59 3.18
3237 5366 6.149308 TGACAATCAGATTACCATGTGACAAC 59.851 38.462 0.00 0.00 35.59 3.32
3238 5367 6.003326 ACAATCAGATTACCATGTGACAACA 58.997 36.000 0.00 0.00 35.59 3.33
3239 5368 6.149973 ACAATCAGATTACCATGTGACAACAG 59.850 38.462 0.00 0.00 40.39 3.16
3240 5369 5.482163 TCAGATTACCATGTGACAACAGA 57.518 39.130 0.00 0.00 40.39 3.41
3241 5370 6.053632 TCAGATTACCATGTGACAACAGAT 57.946 37.500 0.00 0.00 40.39 2.90
3242 5371 7.181569 TCAGATTACCATGTGACAACAGATA 57.818 36.000 0.00 0.00 40.39 1.98
3243 5372 7.619965 TCAGATTACCATGTGACAACAGATAA 58.380 34.615 0.00 0.00 40.39 1.75
3244 5373 8.100164 TCAGATTACCATGTGACAACAGATAAA 58.900 33.333 0.00 0.00 40.39 1.40
3245 5374 8.729756 CAGATTACCATGTGACAACAGATAAAA 58.270 33.333 0.00 0.00 40.39 1.52
3246 5375 9.466497 AGATTACCATGTGACAACAGATAAAAT 57.534 29.630 0.00 0.00 40.39 1.82
3248 5377 9.859427 ATTACCATGTGACAACAGATAAAATTG 57.141 29.630 0.00 0.00 40.39 2.32
3249 5378 6.158598 ACCATGTGACAACAGATAAAATTGC 58.841 36.000 0.00 0.00 40.39 3.56
3250 5379 6.157904 CCATGTGACAACAGATAAAATTGCA 58.842 36.000 0.00 0.00 40.39 4.08
3251 5380 6.645827 CCATGTGACAACAGATAAAATTGCAA 59.354 34.615 0.00 0.00 40.39 4.08
3252 5381 7.332430 CCATGTGACAACAGATAAAATTGCAAT 59.668 33.333 5.99 5.99 40.39 3.56
3253 5382 7.640616 TGTGACAACAGATAAAATTGCAATG 57.359 32.000 13.82 2.23 0.00 2.82
3254 5383 6.145858 TGTGACAACAGATAAAATTGCAATGC 59.854 34.615 13.82 0.00 0.00 3.56
3255 5384 6.366877 GTGACAACAGATAAAATTGCAATGCT 59.633 34.615 13.82 5.73 0.00 3.79
3256 5385 6.930164 TGACAACAGATAAAATTGCAATGCTT 59.070 30.769 13.82 11.98 0.00 3.91
3257 5386 7.095565 TGACAACAGATAAAATTGCAATGCTTG 60.096 33.333 13.82 8.57 0.00 4.01
3258 5387 6.707161 ACAACAGATAAAATTGCAATGCTTGT 59.293 30.769 13.82 8.00 0.00 3.16
3259 5388 6.715344 ACAGATAAAATTGCAATGCTTGTG 57.285 33.333 13.82 9.60 0.00 3.33
3260 5389 6.225318 ACAGATAAAATTGCAATGCTTGTGT 58.775 32.000 13.82 10.20 0.00 3.72
3261 5390 7.377398 ACAGATAAAATTGCAATGCTTGTGTA 58.623 30.769 13.82 0.00 0.00 2.90
3262 5391 8.036575 ACAGATAAAATTGCAATGCTTGTGTAT 58.963 29.630 13.82 1.48 0.00 2.29
3263 5392 9.518906 CAGATAAAATTGCAATGCTTGTGTATA 57.481 29.630 13.82 0.00 0.00 1.47
3267 5396 8.951787 AAAATTGCAATGCTTGTGTATATGAT 57.048 26.923 13.82 0.00 0.00 2.45
3268 5397 8.951787 AAATTGCAATGCTTGTGTATATGATT 57.048 26.923 13.82 0.00 0.00 2.57
3269 5398 8.951787 AATTGCAATGCTTGTGTATATGATTT 57.048 26.923 13.82 0.00 0.00 2.17
3270 5399 7.758613 TTGCAATGCTTGTGTATATGATTTG 57.241 32.000 6.82 0.00 0.00 2.32
3271 5400 6.865411 TGCAATGCTTGTGTATATGATTTGT 58.135 32.000 6.82 0.00 0.00 2.83
3272 5401 6.974048 TGCAATGCTTGTGTATATGATTTGTC 59.026 34.615 6.82 0.00 0.00 3.18
3273 5402 6.974048 GCAATGCTTGTGTATATGATTTGTCA 59.026 34.615 0.00 0.00 0.00 3.58
3274 5403 7.650504 GCAATGCTTGTGTATATGATTTGTCAT 59.349 33.333 0.00 0.00 0.00 3.06
3275 5404 8.964150 CAATGCTTGTGTATATGATTTGTCATG 58.036 33.333 1.37 0.00 0.00 3.07
3276 5405 7.628769 TGCTTGTGTATATGATTTGTCATGT 57.371 32.000 1.37 0.00 0.00 3.21
3277 5406 8.054152 TGCTTGTGTATATGATTTGTCATGTT 57.946 30.769 1.37 0.00 0.00 2.71
3278 5407 8.183536 TGCTTGTGTATATGATTTGTCATGTTC 58.816 33.333 1.37 0.00 0.00 3.18
3279 5408 8.400947 GCTTGTGTATATGATTTGTCATGTTCT 58.599 33.333 1.37 0.00 0.00 3.01
3290 5419 9.515020 TGATTTGTCATGTTCTAAAGTGAAAAC 57.485 29.630 0.00 0.00 0.00 2.43
3291 5420 9.736023 GATTTGTCATGTTCTAAAGTGAAAACT 57.264 29.630 0.00 0.00 0.00 2.66
3292 5421 8.909708 TTTGTCATGTTCTAAAGTGAAAACTG 57.090 30.769 0.00 0.00 0.00 3.16
3293 5422 7.624360 TGTCATGTTCTAAAGTGAAAACTGT 57.376 32.000 0.00 0.00 0.00 3.55
3294 5423 7.693952 TGTCATGTTCTAAAGTGAAAACTGTC 58.306 34.615 0.00 0.00 0.00 3.51
3295 5424 7.335673 TGTCATGTTCTAAAGTGAAAACTGTCA 59.664 33.333 0.00 0.00 0.00 3.58
3296 5425 7.852945 GTCATGTTCTAAAGTGAAAACTGTCAG 59.147 37.037 0.00 0.00 0.00 3.51
3297 5426 6.677781 TGTTCTAAAGTGAAAACTGTCAGG 57.322 37.500 4.53 0.00 0.00 3.86
3298 5427 6.177610 TGTTCTAAAGTGAAAACTGTCAGGT 58.822 36.000 4.53 0.00 0.00 4.00
3299 5428 7.332557 TGTTCTAAAGTGAAAACTGTCAGGTA 58.667 34.615 4.53 0.00 0.00 3.08
3300 5429 7.494625 TGTTCTAAAGTGAAAACTGTCAGGTAG 59.505 37.037 4.53 0.00 0.00 3.18
3301 5430 5.989777 TCTAAAGTGAAAACTGTCAGGTAGC 59.010 40.000 4.53 0.00 0.00 3.58
3302 5431 3.838244 AGTGAAAACTGTCAGGTAGCA 57.162 42.857 4.53 0.00 0.00 3.49
3303 5432 4.357918 AGTGAAAACTGTCAGGTAGCAT 57.642 40.909 4.53 0.00 0.00 3.79
3304 5433 5.483685 AGTGAAAACTGTCAGGTAGCATA 57.516 39.130 4.53 0.00 0.00 3.14
3305 5434 5.865085 AGTGAAAACTGTCAGGTAGCATAA 58.135 37.500 4.53 0.00 0.00 1.90
3306 5435 6.296026 AGTGAAAACTGTCAGGTAGCATAAA 58.704 36.000 4.53 0.00 0.00 1.40
3307 5436 6.770785 AGTGAAAACTGTCAGGTAGCATAAAA 59.229 34.615 4.53 0.00 0.00 1.52
3308 5437 7.284489 AGTGAAAACTGTCAGGTAGCATAAAAA 59.716 33.333 4.53 0.00 0.00 1.94
3339 5468 3.347411 TTTTTGTTTCGCCCGGTTG 57.653 47.368 0.00 0.00 0.00 3.77
3340 5469 0.806492 TTTTTGTTTCGCCCGGTTGC 60.806 50.000 0.00 0.00 0.00 4.17
3341 5470 1.668101 TTTTGTTTCGCCCGGTTGCT 61.668 50.000 0.00 0.00 0.00 3.91
3342 5471 2.065906 TTTGTTTCGCCCGGTTGCTC 62.066 55.000 0.00 0.00 0.00 4.26
3343 5472 3.733960 GTTTCGCCCGGTTGCTCC 61.734 66.667 0.00 0.00 0.00 4.70
3353 5482 2.254471 GGTTGCTCCGAAAGAACCC 58.746 57.895 0.00 0.00 0.00 4.11
3354 5483 1.241990 GGTTGCTCCGAAAGAACCCC 61.242 60.000 0.00 0.00 0.00 4.95
3355 5484 1.074248 TTGCTCCGAAAGAACCCCC 59.926 57.895 0.00 0.00 0.00 5.40
3356 5485 1.710996 TTGCTCCGAAAGAACCCCCA 61.711 55.000 0.00 0.00 0.00 4.96
3357 5486 1.074248 GCTCCGAAAGAACCCCCAA 59.926 57.895 0.00 0.00 0.00 4.12
3358 5487 0.538746 GCTCCGAAAGAACCCCCAAA 60.539 55.000 0.00 0.00 0.00 3.28
3359 5488 1.244816 CTCCGAAAGAACCCCCAAAC 58.755 55.000 0.00 0.00 0.00 2.93
3360 5489 0.848053 TCCGAAAGAACCCCCAAACT 59.152 50.000 0.00 0.00 0.00 2.66
3361 5490 1.202842 TCCGAAAGAACCCCCAAACTC 60.203 52.381 0.00 0.00 0.00 3.01
3362 5491 1.202891 CCGAAAGAACCCCCAAACTCT 60.203 52.381 0.00 0.00 0.00 3.24
3363 5492 2.152016 CGAAAGAACCCCCAAACTCTC 58.848 52.381 0.00 0.00 0.00 3.20
3364 5493 2.515854 GAAAGAACCCCCAAACTCTCC 58.484 52.381 0.00 0.00 0.00 3.71
3365 5494 1.834540 AAGAACCCCCAAACTCTCCT 58.165 50.000 0.00 0.00 0.00 3.69
3366 5495 1.363246 AGAACCCCCAAACTCTCCTC 58.637 55.000 0.00 0.00 0.00 3.71
3367 5496 1.132365 AGAACCCCCAAACTCTCCTCT 60.132 52.381 0.00 0.00 0.00 3.69
3368 5497 1.279558 GAACCCCCAAACTCTCCTCTC 59.720 57.143 0.00 0.00 0.00 3.20
3369 5498 0.494095 ACCCCCAAACTCTCCTCTCT 59.506 55.000 0.00 0.00 0.00 3.10
3370 5499 1.199615 CCCCCAAACTCTCCTCTCTC 58.800 60.000 0.00 0.00 0.00 3.20
3371 5500 1.199615 CCCCAAACTCTCCTCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
3372 5501 0.820871 CCCAAACTCTCCTCTCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
3373 5502 1.551452 CCAAACTCTCCTCTCTCCGT 58.449 55.000 0.00 0.00 0.00 4.69
3374 5503 1.474879 CCAAACTCTCCTCTCTCCGTC 59.525 57.143 0.00 0.00 0.00 4.79
3375 5504 1.474879 CAAACTCTCCTCTCTCCGTCC 59.525 57.143 0.00 0.00 0.00 4.79
3376 5505 0.996583 AACTCTCCTCTCTCCGTCCT 59.003 55.000 0.00 0.00 0.00 3.85
3377 5506 1.882308 ACTCTCCTCTCTCCGTCCTA 58.118 55.000 0.00 0.00 0.00 2.94
3378 5507 2.414612 ACTCTCCTCTCTCCGTCCTAT 58.585 52.381 0.00 0.00 0.00 2.57
3379 5508 2.105821 ACTCTCCTCTCTCCGTCCTATG 59.894 54.545 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.822667 TCATGCAACATAATGTCAACTTCT 57.177 33.333 0.00 0.00 0.00 2.85
1 2 6.412943 CGATCATGCAACATAATGTCAACTTC 59.587 38.462 0.00 0.00 0.00 3.01
2 3 6.093909 TCGATCATGCAACATAATGTCAACTT 59.906 34.615 0.00 0.00 0.00 2.66
3 4 5.585844 TCGATCATGCAACATAATGTCAACT 59.414 36.000 0.00 0.00 0.00 3.16
4 5 5.678483 GTCGATCATGCAACATAATGTCAAC 59.322 40.000 0.00 0.00 0.00 3.18
5 6 5.502220 CGTCGATCATGCAACATAATGTCAA 60.502 40.000 0.00 0.00 0.00 3.18
6 7 4.025813 CGTCGATCATGCAACATAATGTCA 60.026 41.667 0.00 0.00 0.00 3.58
7 8 4.025730 ACGTCGATCATGCAACATAATGTC 60.026 41.667 0.00 0.00 0.00 3.06
8 9 3.871006 ACGTCGATCATGCAACATAATGT 59.129 39.130 0.00 0.00 0.00 2.71
9 10 4.206088 CACGTCGATCATGCAACATAATG 58.794 43.478 0.00 0.00 0.00 1.90
10 11 3.303329 GCACGTCGATCATGCAACATAAT 60.303 43.478 12.12 0.00 39.23 1.28
11 12 2.030335 GCACGTCGATCATGCAACATAA 59.970 45.455 12.12 0.00 39.23 1.90
12 13 1.592543 GCACGTCGATCATGCAACATA 59.407 47.619 12.12 0.00 39.23 2.29
13 14 0.374758 GCACGTCGATCATGCAACAT 59.625 50.000 12.12 0.00 39.23 2.71
14 15 0.948141 TGCACGTCGATCATGCAACA 60.948 50.000 16.06 0.00 45.96 3.33
15 16 1.787215 TGCACGTCGATCATGCAAC 59.213 52.632 16.06 0.00 45.96 4.17
16 17 4.275524 TGCACGTCGATCATGCAA 57.724 50.000 16.06 3.63 45.96 4.08
18 19 1.208259 TACATGCACGTCGATCATGC 58.792 50.000 21.94 12.90 40.76 4.06
19 20 4.457433 AAATACATGCACGTCGATCATG 57.543 40.909 21.04 21.04 42.27 3.07
20 21 6.347644 CCATTAAATACATGCACGTCGATCAT 60.348 38.462 0.00 0.00 0.00 2.45
21 22 5.050431 CCATTAAATACATGCACGTCGATCA 60.050 40.000 0.00 0.00 0.00 2.92
22 23 5.176774 TCCATTAAATACATGCACGTCGATC 59.823 40.000 0.00 0.00 0.00 3.69
23 24 5.053811 TCCATTAAATACATGCACGTCGAT 58.946 37.500 0.00 0.00 0.00 3.59
24 25 4.434520 TCCATTAAATACATGCACGTCGA 58.565 39.130 0.00 0.00 0.00 4.20
25 26 4.787381 TCCATTAAATACATGCACGTCG 57.213 40.909 0.00 0.00 0.00 5.12
26 27 9.169468 CTTAAATCCATTAAATACATGCACGTC 57.831 33.333 0.00 0.00 33.20 4.34
27 28 8.898761 TCTTAAATCCATTAAATACATGCACGT 58.101 29.630 0.00 0.00 33.20 4.49
28 29 9.385902 CTCTTAAATCCATTAAATACATGCACG 57.614 33.333 0.00 0.00 33.20 5.34
31 32 9.899226 GGACTCTTAAATCCATTAAATACATGC 57.101 33.333 0.00 0.00 33.20 4.06
33 34 9.284968 CCGGACTCTTAAATCCATTAAATACAT 57.715 33.333 0.00 0.00 33.20 2.29
34 35 8.487848 TCCGGACTCTTAAATCCATTAAATACA 58.512 33.333 0.00 0.00 33.20 2.29
35 36 8.897872 TCCGGACTCTTAAATCCATTAAATAC 57.102 34.615 0.00 0.00 33.20 1.89
37 38 8.996651 AATCCGGACTCTTAAATCCATTAAAT 57.003 30.769 6.12 0.00 33.20 1.40
38 39 8.817092 AAATCCGGACTCTTAAATCCATTAAA 57.183 30.769 6.12 0.00 33.20 1.52
39 40 9.908747 TTAAATCCGGACTCTTAAATCCATTAA 57.091 29.630 6.12 0.00 34.35 1.40
40 41 9.555727 CTTAAATCCGGACTCTTAAATCCATTA 57.444 33.333 6.12 0.00 34.35 1.90
41 42 8.272173 TCTTAAATCCGGACTCTTAAATCCATT 58.728 33.333 6.12 0.00 34.35 3.16
42 43 7.802117 TCTTAAATCCGGACTCTTAAATCCAT 58.198 34.615 6.12 0.00 34.35 3.41
43 44 7.190335 TCTTAAATCCGGACTCTTAAATCCA 57.810 36.000 6.12 0.00 34.35 3.41
44 45 9.945904 ATATCTTAAATCCGGACTCTTAAATCC 57.054 33.333 6.12 0.00 0.00 3.01
47 48 9.542462 CACATATCTTAAATCCGGACTCTTAAA 57.458 33.333 6.12 3.63 0.00 1.52
48 49 8.148351 CCACATATCTTAAATCCGGACTCTTAA 58.852 37.037 6.12 10.46 0.00 1.85
49 50 7.507956 TCCACATATCTTAAATCCGGACTCTTA 59.492 37.037 6.12 1.89 0.00 2.10
50 51 6.326583 TCCACATATCTTAAATCCGGACTCTT 59.673 38.462 6.12 3.03 0.00 2.85
51 52 5.839063 TCCACATATCTTAAATCCGGACTCT 59.161 40.000 6.12 0.00 0.00 3.24
52 53 6.097915 TCCACATATCTTAAATCCGGACTC 57.902 41.667 6.12 0.00 0.00 3.36
53 54 6.467677 CATCCACATATCTTAAATCCGGACT 58.532 40.000 6.12 0.00 0.00 3.85
54 55 5.122396 GCATCCACATATCTTAAATCCGGAC 59.878 44.000 6.12 0.00 0.00 4.79
55 56 5.221823 TGCATCCACATATCTTAAATCCGGA 60.222 40.000 6.61 6.61 0.00 5.14
56 57 5.003160 TGCATCCACATATCTTAAATCCGG 58.997 41.667 0.00 0.00 0.00 5.14
57 58 5.389830 CGTGCATCCACATATCTTAAATCCG 60.390 44.000 0.00 0.00 42.17 4.18
58 59 5.106555 CCGTGCATCCACATATCTTAAATCC 60.107 44.000 0.00 0.00 42.17 3.01
59 60 5.700832 TCCGTGCATCCACATATCTTAAATC 59.299 40.000 0.00 0.00 42.17 2.17
60 61 5.620206 TCCGTGCATCCACATATCTTAAAT 58.380 37.500 0.00 0.00 42.17 1.40
61 62 5.029807 TCCGTGCATCCACATATCTTAAA 57.970 39.130 0.00 0.00 42.17 1.52
62 63 4.681074 TCCGTGCATCCACATATCTTAA 57.319 40.909 0.00 0.00 42.17 1.85
63 64 4.343814 TCTTCCGTGCATCCACATATCTTA 59.656 41.667 0.00 0.00 42.17 2.10
64 65 3.134623 TCTTCCGTGCATCCACATATCTT 59.865 43.478 0.00 0.00 42.17 2.40
65 66 2.700371 TCTTCCGTGCATCCACATATCT 59.300 45.455 0.00 0.00 42.17 1.98
66 67 3.111853 TCTTCCGTGCATCCACATATC 57.888 47.619 0.00 0.00 42.17 1.63
67 68 3.558931 TTCTTCCGTGCATCCACATAT 57.441 42.857 0.00 0.00 42.17 1.78
68 69 3.342377 TTTCTTCCGTGCATCCACATA 57.658 42.857 0.00 0.00 42.17 2.29
69 70 2.198827 TTTCTTCCGTGCATCCACAT 57.801 45.000 0.00 0.00 42.17 3.21
70 71 1.974265 TTTTCTTCCGTGCATCCACA 58.026 45.000 0.00 0.00 42.17 4.17
87 88 1.072648 TCCGGACGGACCTTCATTTTT 59.927 47.619 9.76 0.00 39.76 1.94
88 89 0.688487 TCCGGACGGACCTTCATTTT 59.312 50.000 9.76 0.00 39.76 1.82
89 90 2.368591 TCCGGACGGACCTTCATTT 58.631 52.632 9.76 0.00 39.76 2.32
90 91 4.123571 TCCGGACGGACCTTCATT 57.876 55.556 9.76 0.00 39.76 2.57
130 131 4.817063 CAAATGCCTGCGGACGCG 62.817 66.667 3.53 3.53 45.51 6.01
131 132 3.386867 CTCAAATGCCTGCGGACGC 62.387 63.158 10.13 10.13 42.35 5.19
132 133 2.034879 ACTCAAATGCCTGCGGACG 61.035 57.895 0.00 0.00 0.00 4.79
133 134 1.503542 CACTCAAATGCCTGCGGAC 59.496 57.895 0.00 0.00 0.00 4.79
134 135 1.675310 CCACTCAAATGCCTGCGGA 60.675 57.895 0.00 0.00 0.00 5.54
135 136 1.926511 GACCACTCAAATGCCTGCGG 61.927 60.000 0.00 0.00 0.00 5.69
136 137 1.503542 GACCACTCAAATGCCTGCG 59.496 57.895 0.00 0.00 0.00 5.18
137 138 1.237285 ACGACCACTCAAATGCCTGC 61.237 55.000 0.00 0.00 0.00 4.85
138 139 2.093306 TACGACCACTCAAATGCCTG 57.907 50.000 0.00 0.00 0.00 4.85
139 140 3.350219 AATACGACCACTCAAATGCCT 57.650 42.857 0.00 0.00 0.00 4.75
140 141 3.758300 CAAATACGACCACTCAAATGCC 58.242 45.455 0.00 0.00 0.00 4.40
141 142 3.171277 GCAAATACGACCACTCAAATGC 58.829 45.455 0.00 0.00 0.00 3.56
142 143 3.190327 TGGCAAATACGACCACTCAAATG 59.810 43.478 0.00 0.00 0.00 2.32
143 144 3.417101 TGGCAAATACGACCACTCAAAT 58.583 40.909 0.00 0.00 0.00 2.32
144 145 2.852449 TGGCAAATACGACCACTCAAA 58.148 42.857 0.00 0.00 0.00 2.69
145 146 2.552599 TGGCAAATACGACCACTCAA 57.447 45.000 0.00 0.00 0.00 3.02
146 147 2.224426 ACTTGGCAAATACGACCACTCA 60.224 45.455 0.00 0.00 31.83 3.41
147 148 2.415512 GACTTGGCAAATACGACCACTC 59.584 50.000 0.00 0.00 31.83 3.51
148 149 2.423577 GACTTGGCAAATACGACCACT 58.576 47.619 0.00 0.00 31.83 4.00
149 150 1.467342 GGACTTGGCAAATACGACCAC 59.533 52.381 0.00 0.00 31.83 4.16
150 151 1.816074 GGACTTGGCAAATACGACCA 58.184 50.000 0.00 0.00 0.00 4.02
151 152 0.725117 CGGACTTGGCAAATACGACC 59.275 55.000 7.69 1.49 0.00 4.79
152 153 0.725117 CCGGACTTGGCAAATACGAC 59.275 55.000 15.82 0.00 0.00 4.34
153 154 3.146783 CCGGACTTGGCAAATACGA 57.853 52.632 15.82 0.00 0.00 3.43
162 163 1.017387 GCATCTAAAGCCGGACTTGG 58.983 55.000 5.05 0.00 39.09 3.61
163 164 1.936547 GAGCATCTAAAGCCGGACTTG 59.063 52.381 5.05 0.00 39.09 3.16
164 165 2.317530 GAGCATCTAAAGCCGGACTT 57.682 50.000 5.05 5.30 41.70 3.01
177 178 8.812329 GTCATATTCGGATAATGTTAGAGCATC 58.188 37.037 0.00 0.00 0.00 3.91
178 179 8.314021 TGTCATATTCGGATAATGTTAGAGCAT 58.686 33.333 0.00 0.00 0.00 3.79
179 180 7.666623 TGTCATATTCGGATAATGTTAGAGCA 58.333 34.615 0.00 0.00 0.00 4.26
180 181 8.029522 TCTGTCATATTCGGATAATGTTAGAGC 58.970 37.037 0.00 0.00 0.00 4.09
218 219 4.256110 ACCTACGTTACCAGCCAAAATAC 58.744 43.478 0.00 0.00 0.00 1.89
244 245 1.004292 GTTCAGAAAACACCACGTCGG 60.004 52.381 0.00 2.92 42.50 4.79
300 2363 7.333423 TGAGTTGGTACCGAAGAAGAAATAATG 59.667 37.037 2.45 0.00 0.00 1.90
314 2377 4.788521 GCAGAAAAAGTTGAGTTGGTACCG 60.789 45.833 7.57 0.00 0.00 4.02
376 2439 2.420642 CAATGATACCATCCTCCTGCG 58.579 52.381 0.00 0.00 31.40 5.18
391 2454 1.894466 CCAAATCTGTGGTGGCAATGA 59.106 47.619 0.00 0.00 33.63 2.57
415 2481 2.493278 CAGCCATTTCCCTGTAAAGTGG 59.507 50.000 0.00 0.00 0.00 4.00
416 2482 2.493278 CCAGCCATTTCCCTGTAAAGTG 59.507 50.000 0.00 0.00 0.00 3.16
432 2498 5.560966 TTTTCGAATGATAAACTCCAGCC 57.439 39.130 0.00 0.00 0.00 4.85
451 2517 0.039527 CGGTTAAAGGCAGCGCTTTT 60.040 50.000 7.50 9.24 40.70 2.27
491 2561 4.439563 GGTGCCATTTAAATTCCGTACTGG 60.440 45.833 0.00 0.00 40.09 4.00
580 2651 3.209410 GCCAGTCATCAGGTAGAAATGG 58.791 50.000 0.00 0.00 0.00 3.16
590 2661 0.176449 TCCACATCGCCAGTCATCAG 59.824 55.000 0.00 0.00 0.00 2.90
591 2662 0.832626 ATCCACATCGCCAGTCATCA 59.167 50.000 0.00 0.00 0.00 3.07
1294 3408 3.823330 CCGAGTACGCGCCTTCCT 61.823 66.667 13.96 0.00 38.29 3.36
1608 3722 1.667154 CGAACTCCCTGAGATCGGCA 61.667 60.000 13.82 0.00 46.20 5.69
1678 3792 2.695666 CCATGTAGAACGAGTCCTCCAT 59.304 50.000 0.00 0.00 0.00 3.41
1736 3850 4.024545 CCACCTTTACCCGCCCGT 62.025 66.667 0.00 0.00 0.00 5.28
1777 3891 1.961277 CCAGAACGCCGTTGCTTCT 60.961 57.895 7.45 0.00 36.23 2.85
1896 4010 3.849953 GCATCGTCAACGGCGTCC 61.850 66.667 15.17 3.36 40.29 4.79
2114 4228 1.076777 ATGCCCTACACCATGCACC 60.077 57.895 0.00 0.00 36.41 5.01
2147 4261 2.835895 GCCGTCCTCCTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
2148 4262 3.015332 ATGCCGTCCTCCTCCTCCT 62.015 63.158 0.00 0.00 0.00 3.69
2149 4263 2.444895 ATGCCGTCCTCCTCCTCC 60.445 66.667 0.00 0.00 0.00 4.30
2150 4264 2.801631 CCATGCCGTCCTCCTCCTC 61.802 68.421 0.00 0.00 0.00 3.71
2151 4265 2.765807 CCATGCCGTCCTCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
2152 4266 4.554036 GCCATGCCGTCCTCCTCC 62.554 72.222 0.00 0.00 0.00 4.30
2387 4501 2.388232 CGGTGCAACGGCCTAGTTC 61.388 63.158 18.51 0.00 40.13 3.01
2388 4502 2.358247 CGGTGCAACGGCCTAGTT 60.358 61.111 18.51 0.00 40.13 2.24
2389 4503 3.622826 ACGGTGCAACGGCCTAGT 61.623 61.111 30.15 2.23 41.39 2.57
2390 4504 3.118454 CACGGTGCAACGGCCTAG 61.118 66.667 30.15 8.74 41.39 3.02
2454 4568 1.078201 TCATGCGATGCACGTGACTC 61.078 55.000 22.23 13.47 43.04 3.36
2462 4576 3.190118 TGTGTGTAATTTCATGCGATGCA 59.810 39.130 0.00 0.00 44.86 3.96
2467 4581 2.227626 TGGGTGTGTGTAATTTCATGCG 59.772 45.455 0.00 0.00 0.00 4.73
2498 4613 6.017933 CACTAATTAAAGCAGCTTCGACAAG 58.982 40.000 8.48 6.66 0.00 3.16
2594 4713 2.685897 CAGAAAACCTTTGTGTTCCCGA 59.314 45.455 0.00 0.00 39.20 5.14
2632 4751 3.973305 ACCAACCCAAAACCATTTCTCAT 59.027 39.130 0.00 0.00 0.00 2.90
2676 4797 4.396478 TCTCATCTCTCACAGTAGAAACGG 59.604 45.833 0.00 0.00 0.00 4.44
2725 4846 5.008613 ACAAGTGTACAAGTGCAACCATAAG 59.991 40.000 0.00 0.00 37.80 1.73
2804 4925 4.237724 CCTGCTGATATACACGGTACATG 58.762 47.826 0.00 0.00 0.00 3.21
2828 4949 8.660295 ATTGACGGAGGGAATATTATGTACTA 57.340 34.615 0.00 0.00 0.00 1.82
2832 4953 7.878127 CACTTATTGACGGAGGGAATATTATGT 59.122 37.037 0.00 0.00 0.00 2.29
2833 4954 7.878127 ACACTTATTGACGGAGGGAATATTATG 59.122 37.037 0.00 0.00 0.00 1.90
2834 4955 7.974504 ACACTTATTGACGGAGGGAATATTAT 58.025 34.615 0.00 0.00 0.00 1.28
2835 4956 7.070198 TGACACTTATTGACGGAGGGAATATTA 59.930 37.037 0.00 0.00 0.00 0.98
2836 4957 6.126883 TGACACTTATTGACGGAGGGAATATT 60.127 38.462 0.00 0.00 0.00 1.28
2840 4969 2.901192 TGACACTTATTGACGGAGGGAA 59.099 45.455 0.00 0.00 0.00 3.97
2879 5008 5.568620 AGTCAGTGACACTTATTTCCCTT 57.431 39.130 24.73 0.00 34.60 3.95
2903 5032 9.298774 GTCGCTAATCTAGTACAACTTTGTATT 57.701 33.333 5.16 4.04 44.59 1.89
2904 5033 8.464404 TGTCGCTAATCTAGTACAACTTTGTAT 58.536 33.333 5.16 0.00 44.59 2.29
2905 5034 7.752239 GTGTCGCTAATCTAGTACAACTTTGTA 59.248 37.037 0.00 0.00 42.35 2.41
2906 5035 6.585322 GTGTCGCTAATCTAGTACAACTTTGT 59.415 38.462 0.00 0.00 44.86 2.83
2907 5036 6.807230 AGTGTCGCTAATCTAGTACAACTTTG 59.193 38.462 0.00 0.00 0.00 2.77
2908 5037 6.921914 AGTGTCGCTAATCTAGTACAACTTT 58.078 36.000 0.00 0.00 0.00 2.66
2909 5038 6.512342 AGTGTCGCTAATCTAGTACAACTT 57.488 37.500 0.00 0.00 0.00 2.66
2910 5039 6.512342 AAGTGTCGCTAATCTAGTACAACT 57.488 37.500 0.00 0.00 0.00 3.16
2911 5040 8.853469 AATAAGTGTCGCTAATCTAGTACAAC 57.147 34.615 0.00 0.00 0.00 3.32
2951 5080 2.163010 GTCTTGAGTGCCATTGTCCATG 59.837 50.000 0.00 0.00 0.00 3.66
2952 5081 2.224843 TGTCTTGAGTGCCATTGTCCAT 60.225 45.455 0.00 0.00 0.00 3.41
2953 5082 1.142667 TGTCTTGAGTGCCATTGTCCA 59.857 47.619 0.00 0.00 0.00 4.02
2954 5083 1.896220 TGTCTTGAGTGCCATTGTCC 58.104 50.000 0.00 0.00 0.00 4.02
2955 5084 5.824904 AATATGTCTTGAGTGCCATTGTC 57.175 39.130 0.00 0.00 0.00 3.18
2956 5085 6.594788 AAAATATGTCTTGAGTGCCATTGT 57.405 33.333 0.00 0.00 0.00 2.71
2959 5088 9.851686 TCTATAAAAATATGTCTTGAGTGCCAT 57.148 29.630 0.00 0.00 0.00 4.40
2960 5089 9.679661 TTCTATAAAAATATGTCTTGAGTGCCA 57.320 29.630 0.00 0.00 0.00 4.92
2968 5097 9.920946 TGGGCTTCTTCTATAAAAATATGTCTT 57.079 29.630 0.00 0.00 0.00 3.01
2973 5102 9.525826 CCAGATGGGCTTCTTCTATAAAAATAT 57.474 33.333 0.00 0.00 0.00 1.28
2974 5103 8.924511 CCAGATGGGCTTCTTCTATAAAAATA 57.075 34.615 0.00 0.00 0.00 1.40
2975 5104 7.830099 CCAGATGGGCTTCTTCTATAAAAAT 57.170 36.000 0.00 0.00 0.00 1.82
2992 5121 4.760530 TTCTGATAACTCACCCAGATGG 57.239 45.455 0.00 0.00 35.82 3.51
2993 5122 6.018425 CGAATTTCTGATAACTCACCCAGATG 60.018 42.308 0.00 0.00 35.82 2.90
2994 5123 6.051717 CGAATTTCTGATAACTCACCCAGAT 58.948 40.000 0.00 0.00 35.82 2.90
2995 5124 5.419542 CGAATTTCTGATAACTCACCCAGA 58.580 41.667 0.00 0.00 34.25 3.86
2996 5125 4.034510 GCGAATTTCTGATAACTCACCCAG 59.965 45.833 0.00 0.00 0.00 4.45
2997 5126 3.938963 GCGAATTTCTGATAACTCACCCA 59.061 43.478 0.00 0.00 0.00 4.51
2998 5127 4.192317 AGCGAATTTCTGATAACTCACCC 58.808 43.478 0.00 0.00 0.00 4.61
2999 5128 5.220681 GGAAGCGAATTTCTGATAACTCACC 60.221 44.000 0.00 0.00 0.00 4.02
3000 5129 5.500931 CGGAAGCGAATTTCTGATAACTCAC 60.501 44.000 0.00 0.00 35.85 3.51
3001 5130 4.566759 CGGAAGCGAATTTCTGATAACTCA 59.433 41.667 0.00 0.00 35.85 3.41
3002 5131 4.804139 TCGGAAGCGAATTTCTGATAACTC 59.196 41.667 0.00 0.00 37.50 3.01
3003 5132 4.567159 GTCGGAAGCGAATTTCTGATAACT 59.433 41.667 8.77 0.00 42.63 2.24
3004 5133 4.548346 CGTCGGAAGCGAATTTCTGATAAC 60.548 45.833 8.77 0.00 42.63 1.89
3005 5134 3.550275 CGTCGGAAGCGAATTTCTGATAA 59.450 43.478 8.77 0.00 42.63 1.75
3006 5135 3.113322 CGTCGGAAGCGAATTTCTGATA 58.887 45.455 8.77 0.00 42.63 2.15
3007 5136 1.927174 CGTCGGAAGCGAATTTCTGAT 59.073 47.619 8.77 0.00 42.63 2.90
3008 5137 1.346365 CGTCGGAAGCGAATTTCTGA 58.654 50.000 0.00 0.00 39.51 3.27
3009 5138 0.370273 CCGTCGGAAGCGAATTTCTG 59.630 55.000 4.91 0.00 35.26 3.02
3010 5139 0.739813 CCCGTCGGAAGCGAATTTCT 60.740 55.000 14.39 0.00 33.58 2.52
3011 5140 0.738412 TCCCGTCGGAAGCGAATTTC 60.738 55.000 14.39 0.00 34.19 2.17
3012 5141 0.107848 ATCCCGTCGGAAGCGAATTT 60.108 50.000 14.39 0.00 43.10 1.82
3013 5142 0.107848 AATCCCGTCGGAAGCGAATT 60.108 50.000 14.39 0.00 43.10 2.17
3014 5143 0.810031 CAATCCCGTCGGAAGCGAAT 60.810 55.000 14.39 0.00 43.10 3.34
3015 5144 1.447140 CAATCCCGTCGGAAGCGAA 60.447 57.895 14.39 0.00 43.10 4.70
3016 5145 1.879737 TTCAATCCCGTCGGAAGCGA 61.880 55.000 14.39 0.94 43.10 4.93
3017 5146 1.447140 TTCAATCCCGTCGGAAGCG 60.447 57.895 14.39 0.00 43.10 4.68
3018 5147 1.366854 GGTTCAATCCCGTCGGAAGC 61.367 60.000 14.39 4.37 43.10 3.86
3019 5148 0.743345 GGGTTCAATCCCGTCGGAAG 60.743 60.000 14.39 0.00 43.10 3.46
3020 5149 1.297364 GGGTTCAATCCCGTCGGAA 59.703 57.895 14.39 0.00 43.10 4.30
3021 5150 2.983791 GGGTTCAATCCCGTCGGA 59.016 61.111 14.39 0.00 44.33 4.55
3028 5157 3.140814 GCGCCCAGGGTTCAATCC 61.141 66.667 7.55 0.00 0.00 3.01
3029 5158 2.361104 TGCGCCCAGGGTTCAATC 60.361 61.111 7.55 0.00 0.00 2.67
3030 5159 2.361610 CTGCGCCCAGGGTTCAAT 60.362 61.111 7.55 0.00 35.38 2.57
3043 5172 2.167219 CACAGTGGCGTATCCTGCG 61.167 63.158 0.00 0.00 35.26 5.18
3044 5173 0.673644 AACACAGTGGCGTATCCTGC 60.674 55.000 5.31 0.00 35.26 4.85
3045 5174 1.732259 GAAACACAGTGGCGTATCCTG 59.268 52.381 5.31 0.00 35.26 3.86
3046 5175 1.338769 GGAAACACAGTGGCGTATCCT 60.339 52.381 5.31 0.00 35.26 3.24
3047 5176 1.084289 GGAAACACAGTGGCGTATCC 58.916 55.000 5.31 1.42 0.00 2.59
3048 5177 2.094762 AGGAAACACAGTGGCGTATC 57.905 50.000 5.31 0.00 0.00 2.24
3049 5178 2.151202 CAAGGAAACACAGTGGCGTAT 58.849 47.619 5.31 0.00 0.00 3.06
3050 5179 1.588674 CAAGGAAACACAGTGGCGTA 58.411 50.000 5.31 0.00 0.00 4.42
3051 5180 1.724582 GCAAGGAAACACAGTGGCGT 61.725 55.000 5.31 0.00 0.00 5.68
3052 5181 1.008538 GCAAGGAAACACAGTGGCG 60.009 57.895 5.31 0.00 0.00 5.69
3053 5182 1.363807 GGCAAGGAAACACAGTGGC 59.636 57.895 5.31 0.00 0.00 5.01
3054 5183 0.385390 GTGGCAAGGAAACACAGTGG 59.615 55.000 5.31 0.00 35.30 4.00
3055 5184 1.392589 AGTGGCAAGGAAACACAGTG 58.607 50.000 0.00 0.00 37.58 3.66
3056 5185 2.487265 CCTAGTGGCAAGGAAACACAGT 60.487 50.000 0.00 0.00 37.58 3.55
3057 5186 2.154462 CCTAGTGGCAAGGAAACACAG 58.846 52.381 0.00 0.00 37.58 3.66
3058 5187 2.270352 CCTAGTGGCAAGGAAACACA 57.730 50.000 0.00 0.00 37.58 3.72
3085 5214 7.968956 TCAAAATAAGTGTCGCTAGAGAACTAG 59.031 37.037 0.00 0.00 46.21 2.57
3086 5215 7.823665 TCAAAATAAGTGTCGCTAGAGAACTA 58.176 34.615 0.00 0.00 0.00 2.24
3087 5216 6.688578 TCAAAATAAGTGTCGCTAGAGAACT 58.311 36.000 0.00 1.97 0.00 3.01
3088 5217 6.946229 TCAAAATAAGTGTCGCTAGAGAAC 57.054 37.500 0.00 0.00 0.00 3.01
3089 5218 7.358931 CGTTTCAAAATAAGTGTCGCTAGAGAA 60.359 37.037 0.00 0.00 0.00 2.87
3090 5219 6.089016 CGTTTCAAAATAAGTGTCGCTAGAGA 59.911 38.462 0.00 0.00 0.00 3.10
3091 5220 6.089016 TCGTTTCAAAATAAGTGTCGCTAGAG 59.911 38.462 0.00 0.00 0.00 2.43
3092 5221 5.921976 TCGTTTCAAAATAAGTGTCGCTAGA 59.078 36.000 0.00 0.00 0.00 2.43
3093 5222 6.148270 TCGTTTCAAAATAAGTGTCGCTAG 57.852 37.500 0.00 0.00 0.00 3.42
3094 5223 6.347079 CCTTCGTTTCAAAATAAGTGTCGCTA 60.347 38.462 0.00 0.00 0.00 4.26
3095 5224 5.412526 TTCGTTTCAAAATAAGTGTCGCT 57.587 34.783 0.00 0.00 0.00 4.93
3096 5225 4.611366 CCTTCGTTTCAAAATAAGTGTCGC 59.389 41.667 0.00 0.00 0.00 5.19
3097 5226 5.981174 TCCTTCGTTTCAAAATAAGTGTCG 58.019 37.500 0.00 0.00 0.00 4.35
3098 5227 7.415229 ACTTCCTTCGTTTCAAAATAAGTGTC 58.585 34.615 0.00 0.00 0.00 3.67
3099 5228 7.329588 ACTTCCTTCGTTTCAAAATAAGTGT 57.670 32.000 0.00 0.00 0.00 3.55
3103 5232 9.997482 GCATATACTTCCTTCGTTTCAAAATAA 57.003 29.630 0.00 0.00 0.00 1.40
3104 5233 9.168451 TGCATATACTTCCTTCGTTTCAAAATA 57.832 29.630 0.00 0.00 0.00 1.40
3105 5234 8.050778 TGCATATACTTCCTTCGTTTCAAAAT 57.949 30.769 0.00 0.00 0.00 1.82
3106 5235 7.441890 TGCATATACTTCCTTCGTTTCAAAA 57.558 32.000 0.00 0.00 0.00 2.44
3107 5236 7.441890 TTGCATATACTTCCTTCGTTTCAAA 57.558 32.000 0.00 0.00 0.00 2.69
3108 5237 7.441890 TTTGCATATACTTCCTTCGTTTCAA 57.558 32.000 0.00 0.00 0.00 2.69
3109 5238 7.441890 TTTTGCATATACTTCCTTCGTTTCA 57.558 32.000 0.00 0.00 0.00 2.69
3110 5239 6.469275 GCTTTTGCATATACTTCCTTCGTTTC 59.531 38.462 0.00 0.00 46.58 2.78
3111 5240 6.322491 GCTTTTGCATATACTTCCTTCGTTT 58.678 36.000 0.00 0.00 46.58 3.60
3112 5241 5.880341 GCTTTTGCATATACTTCCTTCGTT 58.120 37.500 0.00 0.00 46.58 3.85
3113 5242 5.485662 GCTTTTGCATATACTTCCTTCGT 57.514 39.130 0.00 0.00 46.58 3.85
3206 5335 8.084073 CACATGGTAATCTGATTGTCAGTTTTT 58.916 33.333 13.01 3.38 44.58 1.94
3207 5336 7.448161 TCACATGGTAATCTGATTGTCAGTTTT 59.552 33.333 13.01 5.39 44.58 2.43
3208 5337 6.942005 TCACATGGTAATCTGATTGTCAGTTT 59.058 34.615 13.01 7.48 44.58 2.66
3209 5338 6.372659 GTCACATGGTAATCTGATTGTCAGTT 59.627 38.462 13.01 4.17 44.58 3.16
3210 5339 5.877012 GTCACATGGTAATCTGATTGTCAGT 59.123 40.000 13.01 8.01 44.58 3.41
3211 5340 5.876460 TGTCACATGGTAATCTGATTGTCAG 59.124 40.000 13.01 0.55 45.59 3.51
3212 5341 5.803552 TGTCACATGGTAATCTGATTGTCA 58.196 37.500 13.01 10.67 0.00 3.58
3213 5342 6.149308 TGTTGTCACATGGTAATCTGATTGTC 59.851 38.462 13.01 6.10 0.00 3.18
3214 5343 6.003326 TGTTGTCACATGGTAATCTGATTGT 58.997 36.000 13.01 0.00 0.00 2.71
3215 5344 6.372381 TCTGTTGTCACATGGTAATCTGATTG 59.628 38.462 13.01 0.00 30.39 2.67
3216 5345 6.475504 TCTGTTGTCACATGGTAATCTGATT 58.524 36.000 8.14 8.14 30.39 2.57
3217 5346 6.053632 TCTGTTGTCACATGGTAATCTGAT 57.946 37.500 0.00 0.00 30.39 2.90
3218 5347 5.482163 TCTGTTGTCACATGGTAATCTGA 57.518 39.130 0.00 0.00 30.39 3.27
3219 5348 7.848223 TTATCTGTTGTCACATGGTAATCTG 57.152 36.000 0.00 0.00 30.39 2.90
3220 5349 8.862325 TTTTATCTGTTGTCACATGGTAATCT 57.138 30.769 0.00 0.00 30.39 2.40
3222 5351 9.859427 CAATTTTATCTGTTGTCACATGGTAAT 57.141 29.630 0.00 0.00 30.39 1.89
3223 5352 7.812191 GCAATTTTATCTGTTGTCACATGGTAA 59.188 33.333 0.00 0.00 30.39 2.85
3224 5353 7.040132 TGCAATTTTATCTGTTGTCACATGGTA 60.040 33.333 0.00 0.00 30.39 3.25
3225 5354 6.158598 GCAATTTTATCTGTTGTCACATGGT 58.841 36.000 0.00 0.00 30.39 3.55
3226 5355 6.157904 TGCAATTTTATCTGTTGTCACATGG 58.842 36.000 0.00 0.00 30.39 3.66
3227 5356 7.640616 TTGCAATTTTATCTGTTGTCACATG 57.359 32.000 0.00 0.00 30.39 3.21
3228 5357 7.148540 GCATTGCAATTTTATCTGTTGTCACAT 60.149 33.333 9.83 0.00 30.39 3.21
3229 5358 6.145858 GCATTGCAATTTTATCTGTTGTCACA 59.854 34.615 9.83 0.00 0.00 3.58
3230 5359 6.366877 AGCATTGCAATTTTATCTGTTGTCAC 59.633 34.615 9.83 0.00 0.00 3.67
3231 5360 6.457355 AGCATTGCAATTTTATCTGTTGTCA 58.543 32.000 9.83 0.00 0.00 3.58
3232 5361 6.956299 AGCATTGCAATTTTATCTGTTGTC 57.044 33.333 9.83 0.00 0.00 3.18
3233 5362 7.124347 CAAGCATTGCAATTTTATCTGTTGT 57.876 32.000 9.83 0.00 40.39 3.32
3248 5377 7.650504 ATGACAAATCATATACACAAGCATTGC 59.349 33.333 0.00 0.00 46.93 3.56
3250 5379 8.689061 ACATGACAAATCATATACACAAGCATT 58.311 29.630 0.00 0.00 44.13 3.56
3251 5380 8.229253 ACATGACAAATCATATACACAAGCAT 57.771 30.769 0.00 0.00 44.13 3.79
3252 5381 7.628769 ACATGACAAATCATATACACAAGCA 57.371 32.000 0.00 0.00 44.13 3.91
3253 5382 8.400947 AGAACATGACAAATCATATACACAAGC 58.599 33.333 0.00 0.00 44.13 4.01
3264 5393 9.515020 GTTTTCACTTTAGAACATGACAAATCA 57.485 29.630 0.00 0.00 39.83 2.57
3265 5394 9.736023 AGTTTTCACTTTAGAACATGACAAATC 57.264 29.630 0.00 0.00 0.00 2.17
3266 5395 9.520204 CAGTTTTCACTTTAGAACATGACAAAT 57.480 29.630 0.00 0.00 0.00 2.32
3267 5396 8.519526 ACAGTTTTCACTTTAGAACATGACAAA 58.480 29.630 0.00 0.00 0.00 2.83
3268 5397 8.050778 ACAGTTTTCACTTTAGAACATGACAA 57.949 30.769 0.00 0.00 0.00 3.18
3269 5398 7.335673 TGACAGTTTTCACTTTAGAACATGACA 59.664 33.333 0.00 0.00 0.00 3.58
3270 5399 7.693952 TGACAGTTTTCACTTTAGAACATGAC 58.306 34.615 0.00 0.00 0.00 3.06
3271 5400 7.012327 CCTGACAGTTTTCACTTTAGAACATGA 59.988 37.037 0.00 0.00 0.00 3.07
3272 5401 7.134815 CCTGACAGTTTTCACTTTAGAACATG 58.865 38.462 0.93 0.00 0.00 3.21
3273 5402 6.828785 ACCTGACAGTTTTCACTTTAGAACAT 59.171 34.615 0.93 0.00 0.00 2.71
3274 5403 6.177610 ACCTGACAGTTTTCACTTTAGAACA 58.822 36.000 0.93 0.00 0.00 3.18
3275 5404 6.679327 ACCTGACAGTTTTCACTTTAGAAC 57.321 37.500 0.93 0.00 0.00 3.01
3276 5405 6.482308 GCTACCTGACAGTTTTCACTTTAGAA 59.518 38.462 0.93 0.00 0.00 2.10
3277 5406 5.989777 GCTACCTGACAGTTTTCACTTTAGA 59.010 40.000 0.93 0.00 0.00 2.10
3278 5407 5.758296 TGCTACCTGACAGTTTTCACTTTAG 59.242 40.000 0.93 0.00 0.00 1.85
3279 5408 5.676552 TGCTACCTGACAGTTTTCACTTTA 58.323 37.500 0.93 0.00 0.00 1.85
3280 5409 4.523083 TGCTACCTGACAGTTTTCACTTT 58.477 39.130 0.93 0.00 0.00 2.66
3281 5410 4.150897 TGCTACCTGACAGTTTTCACTT 57.849 40.909 0.93 0.00 0.00 3.16
3282 5411 3.838244 TGCTACCTGACAGTTTTCACT 57.162 42.857 0.93 0.00 0.00 3.41
3283 5412 6.554334 TTTATGCTACCTGACAGTTTTCAC 57.446 37.500 0.93 0.00 0.00 3.18
3284 5413 7.575414 TTTTTATGCTACCTGACAGTTTTCA 57.425 32.000 0.93 0.00 0.00 2.69
3321 5450 0.806492 GCAACCGGGCGAAACAAAAA 60.806 50.000 6.32 0.00 0.00 1.94
3322 5451 1.227002 GCAACCGGGCGAAACAAAA 60.227 52.632 6.32 0.00 0.00 2.44
3323 5452 2.065906 GAGCAACCGGGCGAAACAAA 62.066 55.000 6.32 0.00 39.27 2.83
3324 5453 2.517402 AGCAACCGGGCGAAACAA 60.517 55.556 6.32 0.00 39.27 2.83
3325 5454 2.975799 GAGCAACCGGGCGAAACA 60.976 61.111 6.32 0.00 39.27 2.83
3326 5455 3.733960 GGAGCAACCGGGCGAAAC 61.734 66.667 6.32 0.00 39.27 2.78
3335 5464 1.241990 GGGGTTCTTTCGGAGCAACC 61.242 60.000 6.37 6.37 36.05 3.77
3336 5465 1.241990 GGGGGTTCTTTCGGAGCAAC 61.242 60.000 0.00 0.00 0.00 4.17
3337 5466 1.074248 GGGGGTTCTTTCGGAGCAA 59.926 57.895 0.00 0.00 0.00 3.91
3338 5467 1.710996 TTGGGGGTTCTTTCGGAGCA 61.711 55.000 0.00 0.00 0.00 4.26
3339 5468 0.538746 TTTGGGGGTTCTTTCGGAGC 60.539 55.000 0.00 0.00 0.00 4.70
3340 5469 1.202891 AGTTTGGGGGTTCTTTCGGAG 60.203 52.381 0.00 0.00 0.00 4.63
3341 5470 0.848053 AGTTTGGGGGTTCTTTCGGA 59.152 50.000 0.00 0.00 0.00 4.55
3342 5471 1.202891 AGAGTTTGGGGGTTCTTTCGG 60.203 52.381 0.00 0.00 0.00 4.30
3343 5472 2.152016 GAGAGTTTGGGGGTTCTTTCG 58.848 52.381 0.00 0.00 0.00 3.46
3344 5473 2.108425 AGGAGAGTTTGGGGGTTCTTTC 59.892 50.000 0.00 0.00 0.00 2.62
3345 5474 2.108425 GAGGAGAGTTTGGGGGTTCTTT 59.892 50.000 0.00 0.00 0.00 2.52
3346 5475 1.705745 GAGGAGAGTTTGGGGGTTCTT 59.294 52.381 0.00 0.00 0.00 2.52
3347 5476 1.132365 AGAGGAGAGTTTGGGGGTTCT 60.132 52.381 0.00 0.00 0.00 3.01
3348 5477 1.279558 GAGAGGAGAGTTTGGGGGTTC 59.720 57.143 0.00 0.00 0.00 3.62
3349 5478 1.132365 AGAGAGGAGAGTTTGGGGGTT 60.132 52.381 0.00 0.00 0.00 4.11
3350 5479 0.494095 AGAGAGGAGAGTTTGGGGGT 59.506 55.000 0.00 0.00 0.00 4.95
3351 5480 1.199615 GAGAGAGGAGAGTTTGGGGG 58.800 60.000 0.00 0.00 0.00 5.40
3352 5481 1.199615 GGAGAGAGGAGAGTTTGGGG 58.800 60.000 0.00 0.00 0.00 4.96
3353 5482 0.820871 CGGAGAGAGGAGAGTTTGGG 59.179 60.000 0.00 0.00 0.00 4.12
3354 5483 1.474879 GACGGAGAGAGGAGAGTTTGG 59.525 57.143 0.00 0.00 0.00 3.28
3355 5484 1.474879 GGACGGAGAGAGGAGAGTTTG 59.525 57.143 0.00 0.00 0.00 2.93
3356 5485 1.356398 AGGACGGAGAGAGGAGAGTTT 59.644 52.381 0.00 0.00 0.00 2.66
3357 5486 0.996583 AGGACGGAGAGAGGAGAGTT 59.003 55.000 0.00 0.00 0.00 3.01
3358 5487 1.882308 TAGGACGGAGAGAGGAGAGT 58.118 55.000 0.00 0.00 0.00 3.24
3359 5488 2.778299 CATAGGACGGAGAGAGGAGAG 58.222 57.143 0.00 0.00 0.00 3.20
3360 5489 2.940994 CATAGGACGGAGAGAGGAGA 57.059 55.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.