Multiple sequence alignment - TraesCS6D01G273700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G273700 chr6D 100.000 2174 0 0 1 2174 382553073 382550900 0.000000e+00 4015.0
1 TraesCS6D01G273700 chr6B 87.998 1608 116 45 589 2174 572092445 572090893 0.000000e+00 1829.0
2 TraesCS6D01G273700 chr6B 94.146 205 12 0 1 205 572093583 572093379 1.620000e-81 313.0
3 TraesCS6D01G273700 chr6B 83.898 236 20 11 347 576 572092721 572092498 2.190000e-50 209.0
4 TraesCS6D01G273700 chr6B 94.118 119 7 0 99 217 572093379 572093261 4.770000e-42 182.0
5 TraesCS6D01G273700 chr6A 86.383 705 72 17 1482 2166 524332704 524332004 0.000000e+00 749.0
6 TraesCS6D01G273700 chr6A 89.234 548 37 13 905 1440 524333234 524332697 0.000000e+00 665.0
7 TraesCS6D01G273700 chr6A 91.304 276 18 2 582 856 524333490 524333220 2.640000e-99 372.0
8 TraesCS6D01G273700 chr6A 93.304 224 13 2 355 576 524333776 524333553 1.610000e-86 329.0
9 TraesCS6D01G273700 chr6A 91.284 218 16 2 2 217 524334194 524333978 5.870000e-76 294.0
10 TraesCS6D01G273700 chr5D 80.000 805 76 37 579 1326 10037816 10038592 1.150000e-142 516.0
11 TraesCS6D01G273700 chr5D 85.714 217 19 2 244 459 10037271 10037476 3.630000e-53 219.0
12 TraesCS6D01G273700 chr5A 80.438 731 77 38 640 1326 8058765 8059473 4.170000e-137 497.0
13 TraesCS6D01G273700 chr5A 81.081 555 69 26 9 539 8058217 8058759 5.590000e-111 411.0
14 TraesCS6D01G273700 chr5B 78.382 754 75 48 640 1329 42158567 42157838 2.010000e-110 409.0
15 TraesCS6D01G273700 chr5B 91.000 300 19 8 244 539 42158872 42158577 4.350000e-107 398.0
16 TraesCS6D01G273700 chr4B 96.970 33 1 0 2037 2069 134047225 134047193 3.010000e-04 56.5
17 TraesCS6D01G273700 chr4A 96.970 33 1 0 2037 2069 485708788 485708820 3.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G273700 chr6D 382550900 382553073 2173 True 4015.00 4015 100.0000 1 2174 1 chr6D.!!$R1 2173
1 TraesCS6D01G273700 chr6B 572090893 572093583 2690 True 633.25 1829 90.0400 1 2174 4 chr6B.!!$R1 2173
2 TraesCS6D01G273700 chr6A 524332004 524334194 2190 True 481.80 749 90.3018 2 2166 5 chr6A.!!$R1 2164
3 TraesCS6D01G273700 chr5D 10037271 10038592 1321 False 367.50 516 82.8570 244 1326 2 chr5D.!!$F1 1082
4 TraesCS6D01G273700 chr5A 8058217 8059473 1256 False 454.00 497 80.7595 9 1326 2 chr5A.!!$F1 1317
5 TraesCS6D01G273700 chr5B 42157838 42158872 1034 True 403.50 409 84.6910 244 1329 2 chr5B.!!$R1 1085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 936 0.757188 AGGGATGGAGTGGTAGCTCG 60.757 60.0 0.0 0.0 36.41 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2739 0.254178 AGGCCAACATGAAGATCGCT 59.746 50.0 5.01 0.0 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.952188 AAAAACAGTAGAGTTTCTAAATTCTGC 57.048 29.630 9.88 8.72 40.60 4.26
54 55 5.912396 TCTGCTTAAACAAAATAGTTGTGCG 59.088 36.000 0.00 0.00 32.22 5.34
56 57 4.679654 GCTTAAACAAAATAGTTGTGCGCT 59.320 37.500 9.73 0.00 32.22 5.92
60 61 3.628017 ACAAAATAGTTGTGCGCTCAAC 58.372 40.909 35.82 35.82 45.33 3.18
119 120 7.942341 TGACTGTAGGTTGAAATGTATTTTCCT 59.058 33.333 11.39 11.39 42.63 3.36
120 121 8.706322 ACTGTAGGTTGAAATGTATTTTCCTT 57.294 30.769 11.69 0.00 42.63 3.36
169 171 4.637387 ATTGGATTGTTGCATTTTCCCA 57.363 36.364 0.00 0.00 0.00 4.37
328 482 8.323567 AGATTCTTCAATTACATTTGCCCAATT 58.676 29.630 0.00 0.00 0.00 2.32
344 498 6.197168 TGCCCAATTCTAGATTTGGAATCTT 58.803 36.000 33.43 0.00 41.78 2.40
405 936 0.757188 AGGGATGGAGTGGTAGCTCG 60.757 60.000 0.00 0.00 36.41 5.03
491 1023 8.424918 TCTTGGAAGGTGACATATTAGAGAATC 58.575 37.037 0.00 0.00 0.00 2.52
576 1116 4.895961 AGGCTTAAATAGTCCGATTAGGC 58.104 43.478 0.00 0.00 40.77 3.93
577 1117 4.593634 AGGCTTAAATAGTCCGATTAGGCT 59.406 41.667 0.00 0.00 40.77 4.58
578 1118 4.691216 GGCTTAAATAGTCCGATTAGGCTG 59.309 45.833 0.00 0.00 40.77 4.85
579 1119 4.691216 GCTTAAATAGTCCGATTAGGCTGG 59.309 45.833 0.00 0.00 40.77 4.85
596 1442 3.019564 GCTGGCCATTGTATCACTTCTT 58.980 45.455 5.51 0.00 0.00 2.52
625 1471 4.932200 ACTCGACTTTTCCTCTGCTTAATG 59.068 41.667 0.00 0.00 0.00 1.90
672 1525 5.507985 GCCAGTGTCTTTTATTCTTGCTGTT 60.508 40.000 0.00 0.00 0.00 3.16
744 1602 8.050316 ACATCCTGACTTTGGGAATTATATCT 57.950 34.615 0.00 0.00 35.08 1.98
745 1603 9.170890 ACATCCTGACTTTGGGAATTATATCTA 57.829 33.333 0.00 0.00 35.08 1.98
856 1736 6.545508 TCTTCTGCGAAATATGTGTCATTTG 58.454 36.000 0.00 0.00 0.00 2.32
861 1741 4.500477 GCGAAATATGTGTCATTTGGCTTC 59.500 41.667 7.32 0.00 41.27 3.86
871 1760 4.100653 TGTCATTTGGCTTCATGTTTGGAA 59.899 37.500 0.00 0.00 0.00 3.53
874 1763 3.749665 TTGGCTTCATGTTTGGAAAGG 57.250 42.857 0.00 0.00 0.00 3.11
890 1779 3.477530 GAAAGGGTAGTGTGTTTCTGCT 58.522 45.455 0.00 0.00 0.00 4.24
909 1798 5.648178 TGCTACATGACAGCAATCATTTT 57.352 34.783 19.70 0.00 45.71 1.82
910 1799 5.404096 TGCTACATGACAGCAATCATTTTG 58.596 37.500 19.70 0.00 45.71 2.44
911 1800 5.047872 TGCTACATGACAGCAATCATTTTGT 60.048 36.000 19.70 1.20 45.71 2.83
912 1801 6.150809 TGCTACATGACAGCAATCATTTTGTA 59.849 34.615 19.70 2.18 45.71 2.41
915 1804 7.160547 ACATGACAGCAATCATTTTGTATCA 57.839 32.000 0.00 0.00 37.20 2.15
999 1905 1.344942 CGTCTCCAGGTTTTCTCGCG 61.345 60.000 0.00 0.00 0.00 5.87
1234 2189 5.356426 TGACAGAAACGTGATCTTCAAGAA 58.644 37.500 0.00 0.00 30.40 2.52
1236 2191 5.360591 ACAGAAACGTGATCTTCAAGAACT 58.639 37.500 0.00 0.00 30.40 3.01
1237 2192 5.817816 ACAGAAACGTGATCTTCAAGAACTT 59.182 36.000 0.00 0.00 30.40 2.66
1238 2193 6.984474 ACAGAAACGTGATCTTCAAGAACTTA 59.016 34.615 0.00 0.00 30.40 2.24
1282 2243 4.876107 AGTGGGTAGCTGTGAAATTTATCG 59.124 41.667 0.00 0.00 0.00 2.92
1302 2263 1.541588 GTGGCAAGGTTTGTGGATCTC 59.458 52.381 0.00 0.00 0.00 2.75
1308 2271 4.333926 GCAAGGTTTGTGGATCTCTATGAC 59.666 45.833 0.00 0.00 0.00 3.06
1350 2318 6.156949 TGAAGTAGGAGAGAAGGTATGCAAAT 59.843 38.462 0.00 0.00 0.00 2.32
1380 2348 7.740781 CGATCGATATATTATGGCACTAGTACG 59.259 40.741 10.26 0.00 0.00 3.67
1388 2356 3.293311 TGGCACTAGTACGAGTTTCAC 57.707 47.619 5.83 0.00 0.00 3.18
1389 2357 2.889045 TGGCACTAGTACGAGTTTCACT 59.111 45.455 5.83 0.00 0.00 3.41
1413 2381 2.457366 ATGGAACCTCTTGTGTCGTC 57.543 50.000 0.00 0.00 0.00 4.20
1422 2390 1.275291 TCTTGTGTCGTCATCTTCCCC 59.725 52.381 0.00 0.00 0.00 4.81
1465 2433 7.145474 TCTCTTCCTTACTGGTTAGGTTTTT 57.855 36.000 5.82 0.00 37.07 1.94
1538 2506 0.931005 GGAAAAGCGCTAGTCCATCG 59.069 55.000 26.56 0.00 0.00 3.84
1539 2507 1.641577 GAAAAGCGCTAGTCCATCGT 58.358 50.000 12.05 0.00 0.00 3.73
1540 2508 2.000447 GAAAAGCGCTAGTCCATCGTT 59.000 47.619 12.05 0.00 0.00 3.85
1543 2511 1.641577 AGCGCTAGTCCATCGTTTTC 58.358 50.000 8.99 0.00 0.00 2.29
1544 2512 1.067142 AGCGCTAGTCCATCGTTTTCA 60.067 47.619 8.99 0.00 0.00 2.69
1545 2513 1.324736 GCGCTAGTCCATCGTTTTCAG 59.675 52.381 0.00 0.00 0.00 3.02
1549 2521 4.201628 CGCTAGTCCATCGTTTTCAGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
1553 2525 4.580580 AGTCCATCGTTTTCAGAAAGCTTT 59.419 37.500 12.53 12.53 0.00 3.51
1581 2553 9.533253 GACCCATATTCAAATTAACAGGAATTG 57.467 33.333 0.00 0.00 32.62 2.32
1591 2563 1.722011 ACAGGAATTGTAACTCGCGG 58.278 50.000 6.13 0.00 38.56 6.46
1596 2568 1.463444 GAATTGTAACTCGCGGTTGCT 59.537 47.619 21.67 8.49 40.41 3.91
1620 2592 1.071605 CTAGAACAAGAGTGCACGGC 58.928 55.000 12.01 7.96 0.00 5.68
1729 2712 4.004196 GGTAACAAGTCACTAGCCACTT 57.996 45.455 1.78 1.78 32.87 3.16
1730 2713 3.995048 GGTAACAAGTCACTAGCCACTTC 59.005 47.826 4.30 0.00 30.06 3.01
1731 2714 4.262506 GGTAACAAGTCACTAGCCACTTCT 60.263 45.833 4.30 0.00 30.06 2.85
1733 2716 2.037772 ACAAGTCACTAGCCACTTCTGG 59.962 50.000 4.30 0.00 41.13 3.86
1734 2717 2.016905 AGTCACTAGCCACTTCTGGT 57.983 50.000 0.00 0.00 40.17 4.00
1735 2718 1.896465 AGTCACTAGCCACTTCTGGTC 59.104 52.381 0.00 0.00 40.17 4.02
1752 2739 1.343075 GGTCCCTAGATGACCCTGACA 60.343 57.143 16.52 0.00 45.38 3.58
1982 2997 1.652124 GTGTCACGAACGAACGCATAT 59.348 47.619 0.14 0.00 36.70 1.78
1983 2998 2.847717 GTGTCACGAACGAACGCATATA 59.152 45.455 0.14 0.00 36.70 0.86
1984 2999 3.484649 GTGTCACGAACGAACGCATATAT 59.515 43.478 0.14 0.00 36.70 0.86
1986 3001 5.171874 GTGTCACGAACGAACGCATATATTA 59.828 40.000 0.14 0.00 36.70 0.98
1987 3002 5.171874 TGTCACGAACGAACGCATATATTAC 59.828 40.000 0.14 0.00 36.70 1.89
1988 3003 5.397534 GTCACGAACGAACGCATATATTACT 59.602 40.000 0.14 0.00 36.70 2.24
1989 3004 5.622448 TCACGAACGAACGCATATATTACTC 59.378 40.000 0.14 0.00 36.70 2.59
1990 3005 4.913924 ACGAACGAACGCATATATTACTCC 59.086 41.667 0.14 0.00 36.70 3.85
1991 3006 5.152097 CGAACGAACGCATATATTACTCCT 58.848 41.667 0.00 0.00 0.00 3.69
1992 3007 6.073058 ACGAACGAACGCATATATTACTCCTA 60.073 38.462 0.14 0.00 36.70 2.94
1993 3008 6.248001 CGAACGAACGCATATATTACTCCTAC 59.752 42.308 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.912396 TGAGCGCACAACTATTTTGTTTAAG 59.088 36.000 11.47 0.00 0.00 1.85
56 57 3.748048 GCTAACAATGCTCACTGAGTTGA 59.252 43.478 13.66 0.00 31.39 3.18
60 61 1.662629 CCGCTAACAATGCTCACTGAG 59.337 52.381 1.21 1.21 0.00 3.35
119 120 6.422333 TCCTGGTTATAGCATCACAATCAAA 58.578 36.000 0.00 0.00 0.00 2.69
120 121 6.000246 TCCTGGTTATAGCATCACAATCAA 58.000 37.500 0.00 0.00 0.00 2.57
169 171 5.130145 AGCTTAGAGCACCTACATCATTCTT 59.870 40.000 2.47 0.00 45.56 2.52
241 386 5.336690 CCAAAACCGAATTCATGATCCAAGT 60.337 40.000 6.22 0.00 0.00 3.16
310 464 9.603921 AAATCTAGAATTGGGCAAATGTAATTG 57.396 29.630 0.00 0.00 36.10 2.32
311 465 9.603921 CAAATCTAGAATTGGGCAAATGTAATT 57.396 29.630 12.04 0.00 38.98 1.40
328 482 7.128728 TGACCCCAATAAGATTCCAAATCTAGA 59.871 37.037 0.00 0.00 0.00 2.43
344 498 6.270000 CACCTCTGATATTACTGACCCCAATA 59.730 42.308 0.00 0.00 0.00 1.90
425 956 3.561143 AGCAACCATGACCACTTGTTAA 58.439 40.909 0.00 0.00 0.00 2.01
452 983 7.444487 GTCACCTTCCAAGAATACCAATATACC 59.556 40.741 0.00 0.00 0.00 2.73
491 1023 1.421646 ACACTTCCCTCAACCCTTCAG 59.578 52.381 0.00 0.00 0.00 3.02
547 1087 4.894114 TCGGACTATTTAAGCCTAGCTCTT 59.106 41.667 0.00 0.00 38.25 2.85
565 1105 0.179018 AATGGCCAGCCTAATCGGAC 60.179 55.000 13.05 0.00 36.94 4.79
576 1116 5.882557 AGTTAAGAAGTGATACAATGGCCAG 59.117 40.000 13.05 0.00 0.00 4.85
577 1117 5.647658 CAGTTAAGAAGTGATACAATGGCCA 59.352 40.000 8.56 8.56 33.58 5.36
578 1118 5.880332 TCAGTTAAGAAGTGATACAATGGCC 59.120 40.000 0.00 0.00 35.98 5.36
579 1119 6.595716 AGTCAGTTAAGAAGTGATACAATGGC 59.404 38.462 0.35 0.00 42.40 4.40
596 1442 4.558898 GCAGAGGAAAAGTCGAGTCAGTTA 60.559 45.833 0.00 0.00 0.00 2.24
625 1471 1.068250 GAGGTGGCTGCCGAGATAC 59.932 63.158 14.98 5.84 0.00 2.24
649 1501 5.695851 ACAGCAAGAATAAAAGACACTGG 57.304 39.130 0.00 0.00 0.00 4.00
747 1605 8.836413 CAACCTCATACGTTTGGTCATTATATT 58.164 33.333 6.15 0.00 31.64 1.28
748 1606 7.444183 CCAACCTCATACGTTTGGTCATTATAT 59.556 37.037 6.15 0.00 31.64 0.86
856 1736 1.970640 ACCCTTTCCAAACATGAAGCC 59.029 47.619 0.00 0.00 0.00 4.35
861 1741 3.888930 ACACACTACCCTTTCCAAACATG 59.111 43.478 0.00 0.00 0.00 3.21
871 1760 3.389983 TGTAGCAGAAACACACTACCCTT 59.610 43.478 0.00 0.00 35.25 3.95
874 1763 4.389077 GTCATGTAGCAGAAACACACTACC 59.611 45.833 0.00 0.00 35.25 3.18
890 1779 8.278729 TGATACAAAATGATTGCTGTCATGTA 57.721 30.769 5.38 5.97 38.76 2.29
999 1905 0.034863 TACCACCGAAAAGCCCCATC 60.035 55.000 0.00 0.00 0.00 3.51
1193 2109 5.182190 TCTGTCATGTCAGAGTACACTTCTC 59.818 44.000 17.19 0.00 39.20 2.87
1248 2203 1.068588 GCTACCCACTATGCATCGTCA 59.931 52.381 0.19 0.00 0.00 4.35
1253 2208 2.118679 TCACAGCTACCCACTATGCAT 58.881 47.619 3.79 3.79 0.00 3.96
1282 2243 1.541588 GAGATCCACAAACCTTGCCAC 59.458 52.381 0.00 0.00 0.00 5.01
1308 2271 9.211485 TCCTACTTCAAAAATACTAAGGTTTCG 57.789 33.333 0.00 0.00 0.00 3.46
1326 2294 5.599999 TTGCATACCTTCTCTCCTACTTC 57.400 43.478 0.00 0.00 0.00 3.01
1350 2318 7.761038 AGTGCCATAATATATCGATCGGATA 57.239 36.000 16.41 13.42 41.71 2.59
1388 2356 6.106673 ACGACACAAGAGGTTCCATTTATAG 58.893 40.000 0.00 0.00 0.00 1.31
1389 2357 6.045072 ACGACACAAGAGGTTCCATTTATA 57.955 37.500 0.00 0.00 0.00 0.98
1413 2381 1.225704 GGGCACTCAGGGGAAGATG 59.774 63.158 0.00 0.00 0.00 2.90
1422 2390 1.869767 GATAGCAAATCGGGCACTCAG 59.130 52.381 0.00 0.00 0.00 3.35
1477 2445 8.173542 GGAAAAACCTAACCAGTAAATCTCAA 57.826 34.615 0.00 0.00 35.41 3.02
1478 2446 7.754851 GGAAAAACCTAACCAGTAAATCTCA 57.245 36.000 0.00 0.00 35.41 3.27
1508 2476 2.365293 AGCGCTTTTCCATCCTTTGTTT 59.635 40.909 2.64 0.00 0.00 2.83
1538 2506 5.767816 TGGGTCTAAAGCTTTCTGAAAAC 57.232 39.130 16.57 9.25 0.00 2.43
1539 2507 8.650143 AATATGGGTCTAAAGCTTTCTGAAAA 57.350 30.769 16.57 5.30 0.00 2.29
1540 2508 7.888021 TGAATATGGGTCTAAAGCTTTCTGAAA 59.112 33.333 16.57 2.44 0.00 2.69
1543 2511 7.630242 TTGAATATGGGTCTAAAGCTTTCTG 57.370 36.000 16.57 10.22 0.00 3.02
1544 2512 8.829373 ATTTGAATATGGGTCTAAAGCTTTCT 57.171 30.769 16.57 0.00 0.00 2.52
1549 2521 9.736023 CTGTTAATTTGAATATGGGTCTAAAGC 57.264 33.333 0.00 0.00 0.00 3.51
1581 2553 1.635663 ATGCAGCAACCGCGAGTTAC 61.636 55.000 8.23 5.06 45.49 2.50
1591 2563 3.999663 ACTCTTGTTCTAGATGCAGCAAC 59.000 43.478 4.07 0.04 0.00 4.17
1596 2568 3.329386 GTGCACTCTTGTTCTAGATGCA 58.671 45.455 10.32 10.16 36.86 3.96
1620 2592 4.853924 ACTGTTAGTTTGCTTCCCATTG 57.146 40.909 0.00 0.00 0.00 2.82
1707 2684 2.969950 AGTGGCTAGTGACTTGTTACCA 59.030 45.455 0.00 0.00 0.00 3.25
1708 2685 3.679824 AGTGGCTAGTGACTTGTTACC 57.320 47.619 0.00 0.00 0.00 2.85
1733 2716 2.035632 CTGTCAGGGTCATCTAGGGAC 58.964 57.143 6.86 6.86 34.52 4.46
1734 2717 1.689575 GCTGTCAGGGTCATCTAGGGA 60.690 57.143 1.14 0.00 0.00 4.20
1735 2718 0.755686 GCTGTCAGGGTCATCTAGGG 59.244 60.000 1.14 0.00 0.00 3.53
1752 2739 0.254178 AGGCCAACATGAAGATCGCT 59.746 50.000 5.01 0.00 0.00 4.93
1872 2859 4.436998 GCGGCGTACCAGAGCTGT 62.437 66.667 9.37 0.00 41.51 4.40
1973 2988 8.813643 AGTTTGTAGGAGTAATATATGCGTTC 57.186 34.615 0.00 0.00 0.00 3.95
1982 2997 5.277683 CGCTCGCTAGTTTGTAGGAGTAATA 60.278 44.000 0.00 0.00 0.00 0.98
1983 2998 4.497674 CGCTCGCTAGTTTGTAGGAGTAAT 60.498 45.833 0.00 0.00 0.00 1.89
1984 2999 3.181503 CGCTCGCTAGTTTGTAGGAGTAA 60.182 47.826 0.00 0.00 0.00 2.24
1986 3001 1.132643 CGCTCGCTAGTTTGTAGGAGT 59.867 52.381 0.00 0.00 0.00 3.85
1987 3002 1.534175 CCGCTCGCTAGTTTGTAGGAG 60.534 57.143 0.00 0.00 0.00 3.69
1988 3003 0.454600 CCGCTCGCTAGTTTGTAGGA 59.545 55.000 0.00 0.00 0.00 2.94
1989 3004 1.146358 GCCGCTCGCTAGTTTGTAGG 61.146 60.000 0.00 0.00 0.00 3.18
1990 3005 1.472276 CGCCGCTCGCTAGTTTGTAG 61.472 60.000 0.00 0.00 34.21 2.74
1991 3006 1.515519 CGCCGCTCGCTAGTTTGTA 60.516 57.895 0.00 0.00 34.21 2.41
1992 3007 2.809601 CGCCGCTCGCTAGTTTGT 60.810 61.111 0.00 0.00 34.21 2.83
1993 3008 3.554692 CCGCCGCTCGCTAGTTTG 61.555 66.667 0.00 0.00 36.73 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.