Multiple sequence alignment - TraesCS6D01G273100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G273100 chr6D 100.000 7248 0 0 1 7248 382001028 381993781 0.000000e+00 13385.0
1 TraesCS6D01G273100 chr6D 88.382 241 21 5 3152 3387 381997197 381996959 4.280000e-72 283.0
2 TraesCS6D01G273100 chr6D 88.382 241 21 5 3832 4070 381997877 381997642 4.280000e-72 283.0
3 TraesCS6D01G273100 chr6D 94.203 69 3 1 2737 2805 381997638 381997571 3.580000e-18 104.0
4 TraesCS6D01G273100 chr6D 94.203 69 3 1 3391 3458 381998292 381998224 3.580000e-18 104.0
5 TraesCS6D01G273100 chr6B 96.483 3099 97 10 3732 6820 570979821 570976725 0.000000e+00 5108.0
6 TraesCS6D01G273100 chr6B 88.970 1922 130 47 670 2549 570982999 570981118 0.000000e+00 2300.0
7 TraesCS6D01G273100 chr6B 92.250 800 27 4 2959 3728 570980649 570979855 0.000000e+00 1101.0
8 TraesCS6D01G273100 chr6B 97.083 240 7 0 2568 2807 570980881 570980642 8.760000e-109 405.0
9 TraesCS6D01G273100 chr6B 88.433 268 18 5 6993 7248 570976093 570975827 1.960000e-80 311.0
10 TraesCS6D01G273100 chr6B 88.889 225 15 7 61 278 570995639 570995418 1.200000e-67 268.0
11 TraesCS6D01G273100 chr6B 85.892 241 25 6 3832 4070 570980458 570980225 1.560000e-61 248.0
12 TraesCS6D01G273100 chr6B 94.771 153 8 0 2809 2961 701610486 701610334 9.400000e-59 239.0
13 TraesCS6D01G273100 chr6B 95.614 114 5 0 6852 6965 570976629 570976516 4.470000e-42 183.0
14 TraesCS6D01G273100 chr6B 88.060 134 9 4 388 515 570983123 570982991 1.260000e-32 152.0
15 TraesCS6D01G273100 chr6B 97.701 87 2 0 286 372 570995379 570995293 4.530000e-32 150.0
16 TraesCS6D01G273100 chr6B 89.000 100 4 2 3391 3489 570980712 570980619 4.590000e-22 117.0
17 TraesCS6D01G273100 chr6B 92.754 69 4 1 2737 2805 570980221 570980154 1.660000e-16 99.0
18 TraesCS6D01G273100 chr6B 89.855 69 5 2 2957 3023 570980157 570980089 3.600000e-13 87.9
19 TraesCS6D01G273100 chr6B 100.000 38 0 0 6950 6987 570976511 570976474 3.630000e-08 71.3
20 TraesCS6D01G273100 chr6A 97.148 1788 28 4 3730 5507 523947408 523945634 0.000000e+00 2998.0
21 TraesCS6D01G273100 chr6A 93.481 1902 73 12 670 2530 523950171 523948280 0.000000e+00 2778.0
22 TraesCS6D01G273100 chr6A 94.864 1246 54 3 5585 6820 523945572 523944327 0.000000e+00 1938.0
23 TraesCS6D01G273100 chr6A 98.532 545 7 1 3185 3728 523947984 523947440 0.000000e+00 961.0
24 TraesCS6D01G273100 chr6A 89.840 374 24 10 155 515 523950535 523950163 1.100000e-127 468.0
25 TraesCS6D01G273100 chr6A 88.843 242 19 6 3152 3387 523947299 523947060 2.560000e-74 291.0
26 TraesCS6D01G273100 chr6A 87.783 221 21 4 3851 4070 523947997 523947782 3.360000e-63 254.0
27 TraesCS6D01G273100 chr6A 97.761 134 3 0 2957 3090 523948114 523947981 1.570000e-56 231.0
28 TraesCS6D01G273100 chr6A 89.634 164 15 2 3490 3652 411770407 411770245 2.650000e-49 207.0
29 TraesCS6D01G273100 chr6A 94.488 127 2 1 1 122 523950659 523950533 2.670000e-44 191.0
30 TraesCS6D01G273100 chr6A 91.935 124 3 2 2560 2682 523948286 523948169 4.500000e-37 167.0
31 TraesCS6D01G273100 chr6A 96.939 98 3 0 2708 2805 523948208 523948111 1.620000e-36 165.0
32 TraesCS6D01G273100 chr6A 89.062 128 8 4 6852 6974 523944225 523944099 3.500000e-33 154.0
33 TraesCS6D01G273100 chr6A 93.000 100 4 3 3391 3489 523948179 523948082 7.580000e-30 143.0
34 TraesCS6D01G273100 chr7B 83.264 478 64 12 1177 1652 135582466 135582003 6.720000e-115 425.0
35 TraesCS6D01G273100 chr7B 85.507 276 34 5 1197 1471 532275765 532276035 4.280000e-72 283.0
36 TraesCS6D01G273100 chr7D 83.125 480 61 14 1177 1652 169915322 169914859 3.130000e-113 420.0
37 TraesCS6D01G273100 chr7D 85.870 276 33 5 1197 1471 504174825 504175095 9.200000e-74 289.0
38 TraesCS6D01G273100 chr7A 82.845 478 66 12 1177 1652 172469156 172468693 1.450000e-111 414.0
39 TraesCS6D01G273100 chr7A 100.000 156 0 0 515 670 144657773 144657928 9.200000e-74 289.0
40 TraesCS6D01G273100 chr2B 88.627 255 26 1 1192 1446 91257421 91257672 2.540000e-79 307.0
41 TraesCS6D01G273100 chr2B 95.302 149 7 0 2809 2957 381517696 381517548 3.380000e-58 237.0
42 TraesCS6D01G273100 chr4B 100.000 159 0 0 511 669 127727080 127726922 1.980000e-75 294.0
43 TraesCS6D01G273100 chr4A 98.225 169 1 2 508 675 702001090 702001257 1.980000e-75 294.0
44 TraesCS6D01G273100 chr4A 100.000 156 0 0 515 670 153778253 153778408 9.200000e-74 289.0
45 TraesCS6D01G273100 chr5A 100.000 158 0 0 515 672 400418194 400418351 7.110000e-75 292.0
46 TraesCS6D01G273100 chr5A 100.000 158 0 0 515 672 400495421 400495264 7.110000e-75 292.0
47 TraesCS6D01G273100 chr2A 87.451 255 29 1 1192 1446 59557957 59557706 2.560000e-74 291.0
48 TraesCS6D01G273100 chr2A 94.194 155 9 0 2807 2961 28708166 28708012 3.380000e-58 237.0
49 TraesCS6D01G273100 chr2A 94.667 150 8 0 2809 2958 615770531 615770382 4.370000e-57 233.0
50 TraesCS6D01G273100 chr2A 90.323 155 14 1 3492 3646 141506318 141506471 1.230000e-47 202.0
51 TraesCS6D01G273100 chr1A 100.000 157 0 0 515 671 490890784 490890940 2.560000e-74 291.0
52 TraesCS6D01G273100 chr1A 100.000 157 0 0 515 671 505560759 505560915 2.560000e-74 291.0
53 TraesCS6D01G273100 chr1A 86.243 189 21 4 3492 3676 240310282 240310095 4.430000e-47 200.0
54 TraesCS6D01G273100 chr5D 100.000 156 0 0 515 670 457999433 457999588 9.200000e-74 289.0
55 TraesCS6D01G273100 chr3A 94.771 153 8 0 2808 2960 508217303 508217151 9.400000e-59 239.0
56 TraesCS6D01G273100 chr5B 94.667 150 8 0 2809 2958 184287944 184287795 4.370000e-57 233.0
57 TraesCS6D01G273100 chr3B 94.156 154 8 1 2809 2961 785556901 785556748 4.370000e-57 233.0
58 TraesCS6D01G273100 chr3B 94.000 150 9 0 2809 2958 116007618 116007767 2.030000e-55 228.0
59 TraesCS6D01G273100 chr3B 89.286 168 17 1 3483 3650 245935622 245935456 7.370000e-50 209.0
60 TraesCS6D01G273100 chr1D 89.571 163 17 0 3492 3654 193504536 193504374 2.650000e-49 207.0
61 TraesCS6D01G273100 chr4D 89.441 161 17 0 3485 3645 74079511 74079351 3.430000e-48 204.0
62 TraesCS6D01G273100 chr1B 90.132 152 14 1 2808 2958 525906396 525906547 5.740000e-46 196.0
63 TraesCS6D01G273100 chr1B 88.344 163 18 1 3492 3654 268400168 268400007 2.060000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G273100 chr6D 381993781 382001028 7247 True 13385.000000 13385 100.000000 1 7248 1 chr6D.!!$R1 7247
1 TraesCS6D01G273100 chr6B 570975827 570983123 7296 True 848.600000 5108 92.032833 388 7248 12 chr6B.!!$R2 6860
2 TraesCS6D01G273100 chr6A 523944099 523950659 6560 True 826.076923 2998 93.359692 1 6974 13 chr6A.!!$R2 6973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 157 0.104120 AAAAGGCGACCAAGCAAACC 59.896 50.000 0.00 0.00 39.27 3.27 F
542 574 0.257039 AGCCAGCCCAATAAGTCAGG 59.743 55.000 0.00 0.00 0.00 3.86 F
631 663 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02 F
633 665 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02 F
2207 2310 0.759060 GACCCAAAAAGGTGGCTGGT 60.759 55.000 0.00 0.00 41.42 4.00 F
2868 3216 0.040603 GACGACTAAGTATCCGGCGG 60.041 60.000 22.51 22.51 0.00 6.13 F
2921 3269 0.163788 GGATTTCACTGTCGTGCGTG 59.836 55.000 0.00 0.00 40.99 5.34 F
2936 3284 0.233848 GCGTGAATCGTCCGTGTTTT 59.766 50.000 0.00 0.00 42.13 2.43 F
2944 3292 0.636733 CGTCCGTGTTTTATCGTCCG 59.363 55.000 0.00 0.00 0.00 4.79 F
2957 3305 0.661552 TCGTCCGTATAGCACTGCTC 59.338 55.000 6.86 0.00 40.44 4.26 F
2958 3306 0.663688 CGTCCGTATAGCACTGCTCT 59.336 55.000 6.86 0.00 40.44 4.09 F
2959 3307 1.065701 CGTCCGTATAGCACTGCTCTT 59.934 52.381 6.86 0.00 40.44 2.85 F
3948 4367 1.158007 ATCCCCTTGTTTGGTCCACT 58.842 50.000 0.00 0.00 0.00 4.00 F
5812 6242 0.807667 ACAGCATCGCGGAGTTCATC 60.808 55.000 6.13 0.00 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 1107 0.320771 TCCAAGAAACCAGAGCGCTC 60.321 55.000 30.01 30.01 0.00 5.03 R
2400 2507 1.406477 GGGGTATCACCGAAACAGTCC 60.406 57.143 0.00 0.00 39.83 3.85 R
2566 2673 2.104451 TGGTTTGCGTCACCCTAACTTA 59.896 45.455 0.00 0.00 32.71 2.24 R
2607 2955 5.376625 TGTTCAACTTAATCACTTGAGCCT 58.623 37.500 0.00 0.00 0.00 4.58 R
3090 3438 1.078356 GGAAACTCTCCTTCGGGCC 60.078 63.158 0.00 0.00 41.61 5.80 R
4476 4895 1.898472 TGAGAGATATAGGCAGCCTGC 59.102 52.381 25.59 8.55 44.08 4.85 R
4862 5281 2.717639 AGCCAATAGTAACAGCCAGG 57.282 50.000 0.00 0.00 0.00 4.45 R
5333 5752 1.072505 TGAAGGGCCGAGGTTCAAC 59.927 57.895 3.65 0.00 0.00 3.18 R
5559 5989 6.055588 AGTGGTGGAATGGACTAATTTATCG 58.944 40.000 0.00 0.00 0.00 2.92 R
5583 6013 9.350951 TGTAATCTATAAGCACTCTACAAGCTA 57.649 33.333 0.00 0.00 37.70 3.32 R
5608 6038 4.451900 AGACCAGTACCTGTTCAAAAGTG 58.548 43.478 0.00 0.00 0.00 3.16 R
5610 6040 5.823045 AGAAAGACCAGTACCTGTTCAAAAG 59.177 40.000 0.00 0.00 0.00 2.27 R
5860 6290 0.599728 CGCTGCTAATGGAGGAGAGC 60.600 60.000 0.00 0.00 46.32 4.09 R
7022 7935 0.037326 TCAAGGATCAGCCGTCACAC 60.037 55.000 0.00 0.00 43.43 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.798813 GTGATCCTTGAACACCACGAC 59.201 52.381 0.00 0.00 30.75 4.34
100 106 4.391155 TCCACCCTAACAACATGTGTAAC 58.609 43.478 0.00 0.00 40.60 2.50
122 128 1.508632 GCTGTTCACCGACTAAAGCA 58.491 50.000 0.00 0.00 0.00 3.91
123 129 1.461127 GCTGTTCACCGACTAAAGCAG 59.539 52.381 0.00 0.00 0.00 4.24
124 130 1.461127 CTGTTCACCGACTAAAGCAGC 59.539 52.381 0.00 0.00 0.00 5.25
125 131 0.796927 GTTCACCGACTAAAGCAGCC 59.203 55.000 0.00 0.00 0.00 4.85
126 132 0.669318 TTCACCGACTAAAGCAGCCG 60.669 55.000 0.00 0.00 0.00 5.52
127 133 2.100631 CACCGACTAAAGCAGCCGG 61.101 63.158 0.00 0.00 45.09 6.13
128 134 2.511600 CCGACTAAAGCAGCCGGG 60.512 66.667 2.18 0.00 36.81 5.73
129 135 3.195698 CGACTAAAGCAGCCGGGC 61.196 66.667 12.11 12.11 0.00 6.13
130 136 3.195698 GACTAAAGCAGCCGGGCG 61.196 66.667 14.39 9.89 39.27 6.13
147 153 2.727544 GCAAAAGGCGACCAAGCA 59.272 55.556 0.00 0.00 39.27 3.91
148 154 1.067250 GCAAAAGGCGACCAAGCAA 59.933 52.632 0.00 0.00 39.27 3.91
149 155 0.529555 GCAAAAGGCGACCAAGCAAA 60.530 50.000 0.00 0.00 39.27 3.68
150 156 1.208259 CAAAAGGCGACCAAGCAAAC 58.792 50.000 0.00 0.00 39.27 2.93
151 157 0.104120 AAAAGGCGACCAAGCAAACC 59.896 50.000 0.00 0.00 39.27 3.27
152 158 1.744320 AAAGGCGACCAAGCAAACCC 61.744 55.000 0.00 0.00 39.27 4.11
153 159 3.680786 GGCGACCAAGCAAACCCC 61.681 66.667 0.00 0.00 39.27 4.95
154 160 2.909965 GCGACCAAGCAAACCCCA 60.910 61.111 0.00 0.00 37.05 4.96
155 161 2.919494 GCGACCAAGCAAACCCCAG 61.919 63.158 0.00 0.00 37.05 4.45
156 162 2.919494 CGACCAAGCAAACCCCAGC 61.919 63.158 0.00 0.00 0.00 4.85
202 208 1.065491 AGCCACGCACAATGGATAGAA 60.065 47.619 0.00 0.00 39.87 2.10
206 212 4.631131 CCACGCACAATGGATAGAAGATA 58.369 43.478 0.00 0.00 39.87 1.98
214 220 5.167121 CAATGGATAGAAGATAGTCGCAGG 58.833 45.833 0.00 0.00 0.00 4.85
217 223 1.676746 TAGAAGATAGTCGCAGGCGT 58.323 50.000 13.83 0.00 36.95 5.68
323 348 4.697756 TTCCTGCCACCTTCCGCG 62.698 66.667 0.00 0.00 0.00 6.46
425 450 1.665916 CGCCATCCCGCATCTACTG 60.666 63.158 0.00 0.00 0.00 2.74
457 489 3.452627 GTCCCTATCTTCTTCCTCTTGCA 59.547 47.826 0.00 0.00 0.00 4.08
458 490 3.452627 TCCCTATCTTCTTCCTCTTGCAC 59.547 47.826 0.00 0.00 0.00 4.57
490 522 4.021925 GGCTGGTCACTCGGGCTT 62.022 66.667 0.00 0.00 35.91 4.35
512 544 3.522731 CTCCAGTCTCTCCGCCCG 61.523 72.222 0.00 0.00 0.00 6.13
513 545 3.997400 CTCCAGTCTCTCCGCCCGA 62.997 68.421 0.00 0.00 0.00 5.14
514 546 3.827898 CCAGTCTCTCCGCCCGAC 61.828 72.222 0.00 0.00 0.00 4.79
515 547 3.062466 CAGTCTCTCCGCCCGACA 61.062 66.667 0.00 0.00 0.00 4.35
516 548 2.752238 AGTCTCTCCGCCCGACAG 60.752 66.667 0.00 0.00 0.00 3.51
517 549 3.063084 GTCTCTCCGCCCGACAGT 61.063 66.667 0.00 0.00 0.00 3.55
518 550 3.062466 TCTCTCCGCCCGACAGTG 61.062 66.667 0.00 0.00 0.00 3.66
519 551 4.135153 CTCTCCGCCCGACAGTGG 62.135 72.222 0.00 0.00 38.86 4.00
538 570 3.780624 CGTAGCCAGCCCAATAAGT 57.219 52.632 0.00 0.00 0.00 2.24
539 571 1.583054 CGTAGCCAGCCCAATAAGTC 58.417 55.000 0.00 0.00 0.00 3.01
540 572 1.134521 CGTAGCCAGCCCAATAAGTCA 60.135 52.381 0.00 0.00 0.00 3.41
541 573 2.565841 GTAGCCAGCCCAATAAGTCAG 58.434 52.381 0.00 0.00 0.00 3.51
542 574 0.257039 AGCCAGCCCAATAAGTCAGG 59.743 55.000 0.00 0.00 0.00 3.86
543 575 0.753111 GCCAGCCCAATAAGTCAGGG 60.753 60.000 0.00 0.00 45.68 4.45
544 576 0.625849 CCAGCCCAATAAGTCAGGGT 59.374 55.000 0.00 0.00 44.69 4.34
545 577 1.683011 CCAGCCCAATAAGTCAGGGTG 60.683 57.143 0.00 0.00 44.69 4.61
546 578 0.625849 AGCCCAATAAGTCAGGGTGG 59.374 55.000 0.00 0.00 44.69 4.61
547 579 0.331616 GCCCAATAAGTCAGGGTGGT 59.668 55.000 0.00 0.00 44.69 4.16
548 580 1.682087 GCCCAATAAGTCAGGGTGGTC 60.682 57.143 0.00 0.00 44.69 4.02
549 581 1.064685 CCCAATAAGTCAGGGTGGTCC 60.065 57.143 0.00 0.00 37.81 4.46
550 582 1.633432 CCAATAAGTCAGGGTGGTCCA 59.367 52.381 0.00 0.00 38.24 4.02
551 583 2.618045 CCAATAAGTCAGGGTGGTCCAC 60.618 54.545 14.13 14.13 38.24 4.02
623 655 9.548631 TTTTTAATACACTATGGGGAAATTCCA 57.451 29.630 14.68 0.00 38.64 3.53
624 656 8.760980 TTTAATACACTATGGGGAAATTCCAG 57.239 34.615 14.68 4.99 38.64 3.86
625 657 3.669939 ACACTATGGGGAAATTCCAGG 57.330 47.619 14.68 1.46 38.64 4.45
626 658 2.244769 ACACTATGGGGAAATTCCAGGG 59.755 50.000 14.68 6.09 38.64 4.45
627 659 2.244769 CACTATGGGGAAATTCCAGGGT 59.755 50.000 14.68 2.40 38.64 4.34
628 660 2.244769 ACTATGGGGAAATTCCAGGGTG 59.755 50.000 14.68 3.49 38.64 4.61
629 661 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
630 662 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
631 663 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
632 664 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
633 665 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
634 666 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
635 667 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
647 679 3.338250 TCCATGGACCACCCTGGC 61.338 66.667 11.44 0.00 46.80 4.85
648 680 4.447342 CCATGGACCACCCTGGCC 62.447 72.222 5.56 0.00 43.04 5.36
649 681 3.660571 CATGGACCACCCTGGCCA 61.661 66.667 4.71 4.71 43.97 5.36
650 682 3.661648 ATGGACCACCCTGGCCAC 61.662 66.667 0.00 0.00 43.14 5.01
657 689 4.760220 ACCCTGGCCACCCCCTAG 62.760 72.222 0.00 0.00 0.00 3.02
660 692 2.040884 CTGGCCACCCCCTAGCTA 60.041 66.667 0.00 0.00 0.00 3.32
661 693 2.366435 TGGCCACCCCCTAGCTAC 60.366 66.667 0.00 0.00 0.00 3.58
662 694 3.547513 GGCCACCCCCTAGCTACG 61.548 72.222 0.00 0.00 0.00 3.51
663 695 4.237207 GCCACCCCCTAGCTACGC 62.237 72.222 0.00 0.00 0.00 4.42
664 696 3.547513 CCACCCCCTAGCTACGCC 61.548 72.222 0.00 0.00 0.00 5.68
665 697 2.762459 CACCCCCTAGCTACGCCA 60.762 66.667 0.00 0.00 0.00 5.69
666 698 2.762875 ACCCCCTAGCTACGCCAC 60.763 66.667 0.00 0.00 0.00 5.01
667 699 2.444140 CCCCCTAGCTACGCCACT 60.444 66.667 0.00 0.00 0.00 4.00
668 700 2.797278 CCCCCTAGCTACGCCACTG 61.797 68.421 0.00 0.00 0.00 3.66
669 701 2.107141 CCCTAGCTACGCCACTGC 59.893 66.667 0.00 0.00 0.00 4.40
670 702 2.107141 CCTAGCTACGCCACTGCC 59.893 66.667 0.00 0.00 0.00 4.85
671 703 2.278857 CTAGCTACGCCACTGCCG 60.279 66.667 0.00 0.00 0.00 5.69
672 704 4.508128 TAGCTACGCCACTGCCGC 62.508 66.667 0.00 0.00 0.00 6.53
769 813 3.181967 CTGCCGCTTCCGTCTTCG 61.182 66.667 0.00 0.00 0.00 3.79
774 818 3.119096 GCTTCCGTCTTCGTGGCC 61.119 66.667 0.00 0.00 35.01 5.36
867 914 1.490490 TCCAAGGCGATAAATCCTGCT 59.510 47.619 0.00 0.00 32.00 4.24
933 980 1.740025 CTTCTTCCGGTGATTTGGAGC 59.260 52.381 0.00 0.00 35.26 4.70
939 986 4.179579 GTGATTTGGAGCGCGGGC 62.180 66.667 17.92 17.92 40.37 6.13
1056 1103 1.803519 GAAGGTGAGTGAGCGAGCG 60.804 63.158 0.00 0.00 0.00 5.03
1057 1104 2.201436 GAAGGTGAGTGAGCGAGCGA 62.201 60.000 0.00 0.00 0.00 4.93
1058 1105 2.202544 GGTGAGTGAGCGAGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
1059 1106 2.878520 GTGAGTGAGCGAGCGAGC 60.879 66.667 0.00 0.00 37.41 5.03
1060 1107 4.467062 TGAGTGAGCGAGCGAGCG 62.467 66.667 0.00 0.00 43.00 5.03
1061 1108 4.167359 GAGTGAGCGAGCGAGCGA 62.167 66.667 1.41 0.00 43.00 4.93
1574 1645 2.747855 GGTACAGGGTGCTGCAGC 60.748 66.667 31.89 31.89 42.50 5.25
1711 1796 3.672295 CTCTTGGCCCTCTGACGCC 62.672 68.421 0.00 4.42 45.92 5.68
1744 1829 2.158667 TCCTCCAACCCTTTTCAGTGTC 60.159 50.000 0.00 0.00 0.00 3.67
1872 1957 5.472148 TCAATGCTTGATTTTACTTGCTGG 58.528 37.500 0.00 0.00 34.08 4.85
1910 2003 5.967674 GGTTTATCATTTGAGCATTCGACTG 59.032 40.000 0.00 0.00 0.00 3.51
1913 2006 2.743664 TCATTTGAGCATTCGACTGGTG 59.256 45.455 12.50 0.00 0.00 4.17
2044 2147 4.772115 TGCTCTGCAACACTATGGCACA 62.772 50.000 0.00 0.00 38.31 4.57
2119 2222 1.696336 AGCATGATCGGGCTCTACAAT 59.304 47.619 0.00 0.00 34.76 2.71
2161 2264 1.949631 GTATCGAGCCCTTTCGCCG 60.950 63.158 0.00 0.00 40.29 6.46
2173 2276 3.111098 CCTTTCGCCGTACTACATGTAC 58.889 50.000 0.08 0.00 45.93 2.90
2176 2279 2.090760 TCGCCGTACTACATGTACCAA 58.909 47.619 0.08 0.00 46.49 3.67
2207 2310 0.759060 GACCCAAAAAGGTGGCTGGT 60.759 55.000 0.00 0.00 41.42 4.00
2296 2403 3.007614 GCTGTGACTCTGTTAAGGGGTTA 59.992 47.826 0.00 0.00 0.00 2.85
2298 2405 5.105064 GCTGTGACTCTGTTAAGGGGTTATA 60.105 44.000 0.00 0.00 0.00 0.98
2309 2416 7.743749 TGTTAAGGGGTTATACTACACACAAA 58.256 34.615 0.00 0.00 0.00 2.83
2319 2426 4.593597 ACTACACACAAAAACACAGACG 57.406 40.909 0.00 0.00 0.00 4.18
2400 2507 5.111989 TCTCGCAAAGATCAATTCAGGTAG 58.888 41.667 0.00 0.00 0.00 3.18
2492 2599 5.645929 ACCATTCAGTAATTACGTGCATGAA 59.354 36.000 14.17 17.52 0.00 2.57
2805 3153 4.606673 GCACAACATGTTTCGCATTTCTTG 60.607 41.667 19.38 4.55 35.19 3.02
2806 3154 4.503734 CACAACATGTTTCGCATTTCTTGT 59.496 37.500 8.77 0.00 35.19 3.16
2807 3155 5.005586 CACAACATGTTTCGCATTTCTTGTT 59.994 36.000 8.77 0.00 35.19 2.83
2808 3156 5.231991 ACAACATGTTTCGCATTTCTTGTTC 59.768 36.000 8.77 0.00 35.19 3.18
2809 3157 3.974401 ACATGTTTCGCATTTCTTGTTCG 59.026 39.130 0.00 0.00 35.19 3.95
2810 3158 3.953874 TGTTTCGCATTTCTTGTTCGA 57.046 38.095 0.00 0.00 0.00 3.71
2811 3159 4.280101 TGTTTCGCATTTCTTGTTCGAA 57.720 36.364 0.00 0.00 37.38 3.71
2812 3160 4.663166 TGTTTCGCATTTCTTGTTCGAAA 58.337 34.783 0.00 4.32 43.79 3.46
2814 3162 4.545823 TTCGCATTTCTTGTTCGAAACT 57.454 36.364 0.00 0.00 35.88 2.66
2815 3163 3.872354 TCGCATTTCTTGTTCGAAACTG 58.128 40.909 0.00 0.00 35.88 3.16
2816 3164 2.401720 CGCATTTCTTGTTCGAAACTGC 59.598 45.455 0.00 0.00 35.88 4.40
2817 3165 3.632189 GCATTTCTTGTTCGAAACTGCT 58.368 40.909 0.00 0.00 35.88 4.24
2818 3166 4.610456 CGCATTTCTTGTTCGAAACTGCTA 60.610 41.667 0.00 0.00 36.46 3.49
2819 3167 5.393962 GCATTTCTTGTTCGAAACTGCTAT 58.606 37.500 0.00 0.00 35.88 2.97
2820 3168 6.542852 GCATTTCTTGTTCGAAACTGCTATA 58.457 36.000 0.00 0.00 35.88 1.31
2821 3169 6.466097 GCATTTCTTGTTCGAAACTGCTATAC 59.534 38.462 0.00 0.00 35.88 1.47
2822 3170 7.518161 CATTTCTTGTTCGAAACTGCTATACA 58.482 34.615 0.00 0.00 35.88 2.29
2823 3171 6.462073 TTCTTGTTCGAAACTGCTATACAC 57.538 37.500 0.00 0.00 0.00 2.90
2824 3172 5.534407 TCTTGTTCGAAACTGCTATACACA 58.466 37.500 0.00 0.00 0.00 3.72
2825 3173 5.404366 TCTTGTTCGAAACTGCTATACACAC 59.596 40.000 0.00 0.00 0.00 3.82
2826 3174 3.671459 TGTTCGAAACTGCTATACACACG 59.329 43.478 0.00 0.00 0.00 4.49
2827 3175 3.835378 TCGAAACTGCTATACACACGA 57.165 42.857 0.00 0.00 0.00 4.35
2828 3176 4.365899 TCGAAACTGCTATACACACGAT 57.634 40.909 0.00 0.00 0.00 3.73
2829 3177 5.488645 TCGAAACTGCTATACACACGATA 57.511 39.130 0.00 0.00 0.00 2.92
2830 3178 5.882553 TCGAAACTGCTATACACACGATAA 58.117 37.500 0.00 0.00 0.00 1.75
2831 3179 6.324042 TCGAAACTGCTATACACACGATAAA 58.676 36.000 0.00 0.00 0.00 1.40
2832 3180 6.807720 TCGAAACTGCTATACACACGATAAAA 59.192 34.615 0.00 0.00 0.00 1.52
2833 3181 7.008901 TCGAAACTGCTATACACACGATAAAAG 59.991 37.037 0.00 0.00 0.00 2.27
2834 3182 5.968387 ACTGCTATACACACGATAAAAGC 57.032 39.130 0.00 0.00 0.00 3.51
2835 3183 5.416083 ACTGCTATACACACGATAAAAGCA 58.584 37.500 0.00 0.00 37.22 3.91
2836 3184 6.049149 ACTGCTATACACACGATAAAAGCAT 58.951 36.000 0.00 0.00 38.01 3.79
2837 3185 7.207383 ACTGCTATACACACGATAAAAGCATA 58.793 34.615 0.00 0.00 38.01 3.14
2838 3186 7.382488 ACTGCTATACACACGATAAAAGCATAG 59.618 37.037 0.00 0.00 38.01 2.23
2839 3187 7.430441 TGCTATACACACGATAAAAGCATAGA 58.570 34.615 0.00 0.00 34.05 1.98
2840 3188 7.381408 TGCTATACACACGATAAAAGCATAGAC 59.619 37.037 0.00 0.00 34.05 2.59
2841 3189 6.749216 ATACACACGATAAAAGCATAGACG 57.251 37.500 0.00 0.00 0.00 4.18
2842 3190 4.740268 ACACACGATAAAAGCATAGACGA 58.260 39.130 0.00 0.00 0.00 4.20
2843 3191 5.348986 ACACACGATAAAAGCATAGACGAT 58.651 37.500 0.00 0.00 0.00 3.73
2844 3192 5.232202 ACACACGATAAAAGCATAGACGATG 59.768 40.000 0.00 0.00 38.73 3.84
2845 3193 5.232202 CACACGATAAAAGCATAGACGATGT 59.768 40.000 0.00 0.00 37.90 3.06
2846 3194 5.232202 ACACGATAAAAGCATAGACGATGTG 59.768 40.000 0.00 0.00 37.90 3.21
2847 3195 5.458779 CACGATAAAAGCATAGACGATGTGA 59.541 40.000 0.00 0.00 37.90 3.58
2848 3196 6.019881 CACGATAAAAGCATAGACGATGTGAA 60.020 38.462 0.00 0.00 37.90 3.18
2849 3197 6.199154 ACGATAAAAGCATAGACGATGTGAAG 59.801 38.462 0.00 0.00 37.90 3.02
2850 3198 6.417930 CGATAAAAGCATAGACGATGTGAAGA 59.582 38.462 0.00 0.00 37.90 2.87
2851 3199 5.786401 AAAAGCATAGACGATGTGAAGAC 57.214 39.130 0.00 0.00 37.90 3.01
2852 3200 3.071786 AGCATAGACGATGTGAAGACG 57.928 47.619 0.00 0.00 37.90 4.18
2853 3201 2.683362 AGCATAGACGATGTGAAGACGA 59.317 45.455 0.00 0.00 37.90 4.20
2854 3202 2.784380 GCATAGACGATGTGAAGACGAC 59.216 50.000 0.00 0.00 37.90 4.34
2855 3203 3.487711 GCATAGACGATGTGAAGACGACT 60.488 47.826 0.00 0.00 37.90 4.18
2856 3204 4.260661 GCATAGACGATGTGAAGACGACTA 60.261 45.833 0.00 0.00 37.90 2.59
2857 3205 5.729732 GCATAGACGATGTGAAGACGACTAA 60.730 44.000 0.00 0.00 37.66 2.24
2858 3206 4.343811 AGACGATGTGAAGACGACTAAG 57.656 45.455 0.00 0.00 31.73 2.18
2859 3207 3.752222 AGACGATGTGAAGACGACTAAGT 59.248 43.478 0.00 0.00 31.73 2.24
2860 3208 4.934001 AGACGATGTGAAGACGACTAAGTA 59.066 41.667 0.00 0.00 31.73 2.24
2861 3209 5.585445 AGACGATGTGAAGACGACTAAGTAT 59.415 40.000 0.00 0.00 31.73 2.12
2862 3210 5.808403 ACGATGTGAAGACGACTAAGTATC 58.192 41.667 0.00 0.00 0.00 2.24
2863 3211 5.206299 CGATGTGAAGACGACTAAGTATCC 58.794 45.833 0.00 0.00 0.00 2.59
2864 3212 4.611310 TGTGAAGACGACTAAGTATCCG 57.389 45.455 0.00 0.00 0.00 4.18
2865 3213 3.376234 TGTGAAGACGACTAAGTATCCGG 59.624 47.826 0.00 0.00 0.00 5.14
2866 3214 2.357009 TGAAGACGACTAAGTATCCGGC 59.643 50.000 0.00 0.00 0.00 6.13
2867 3215 0.942962 AGACGACTAAGTATCCGGCG 59.057 55.000 0.00 0.00 34.82 6.46
2868 3216 0.040603 GACGACTAAGTATCCGGCGG 60.041 60.000 22.51 22.51 0.00 6.13
2869 3217 1.371389 CGACTAAGTATCCGGCGGC 60.371 63.158 23.83 7.63 0.00 6.53
2870 3218 1.006454 GACTAAGTATCCGGCGGCC 60.006 63.158 23.83 9.54 0.00 6.13
2872 3220 2.834505 TAAGTATCCGGCGGCCGT 60.835 61.111 36.22 23.37 46.80 5.68
2873 3221 2.359570 CTAAGTATCCGGCGGCCGTT 62.360 60.000 36.22 25.95 46.80 4.44
2874 3222 2.632136 TAAGTATCCGGCGGCCGTTG 62.632 60.000 36.22 23.77 46.80 4.10
2884 3232 3.712907 GGCCGTTGCTCCCCTGTA 61.713 66.667 0.00 0.00 37.74 2.74
2885 3233 2.436115 GCCGTTGCTCCCCTGTAC 60.436 66.667 0.00 0.00 33.53 2.90
2886 3234 3.065306 CCGTTGCTCCCCTGTACA 58.935 61.111 0.00 0.00 0.00 2.90
2887 3235 1.079127 CCGTTGCTCCCCTGTACAG 60.079 63.158 16.34 16.34 0.00 2.74
2888 3236 1.741770 CGTTGCTCCCCTGTACAGC 60.742 63.158 17.86 7.23 0.00 4.40
2889 3237 1.679898 GTTGCTCCCCTGTACAGCT 59.320 57.895 17.86 0.00 34.03 4.24
2890 3238 0.674895 GTTGCTCCCCTGTACAGCTG 60.675 60.000 17.86 13.48 34.03 4.24
2891 3239 2.124942 GCTCCCCTGTACAGCTGC 60.125 66.667 17.86 13.31 0.00 5.25
2892 3240 2.959484 GCTCCCCTGTACAGCTGCA 61.959 63.158 17.86 3.44 0.00 4.41
2893 3241 1.910722 CTCCCCTGTACAGCTGCAT 59.089 57.895 17.86 0.00 0.00 3.96
2894 3242 0.463295 CTCCCCTGTACAGCTGCATG 60.463 60.000 17.86 2.49 0.00 4.06
2895 3243 2.117156 CCCCTGTACAGCTGCATGC 61.117 63.158 17.86 11.82 43.29 4.06
2905 3253 2.827190 CTGCATGCGTGGCTGGAT 60.827 61.111 14.09 0.00 0.00 3.41
2906 3254 2.361483 TGCATGCGTGGCTGGATT 60.361 55.556 14.09 0.00 0.00 3.01
2907 3255 1.940883 CTGCATGCGTGGCTGGATTT 61.941 55.000 14.09 0.00 0.00 2.17
2908 3256 1.226773 GCATGCGTGGCTGGATTTC 60.227 57.895 8.27 0.00 0.00 2.17
2909 3257 1.936436 GCATGCGTGGCTGGATTTCA 61.936 55.000 8.27 0.00 0.00 2.69
2910 3258 0.179156 CATGCGTGGCTGGATTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
2911 3259 0.322816 ATGCGTGGCTGGATTTCACT 60.323 50.000 0.00 0.00 0.00 3.41
2912 3260 1.236616 TGCGTGGCTGGATTTCACTG 61.237 55.000 0.00 0.00 0.00 3.66
2913 3261 1.237285 GCGTGGCTGGATTTCACTGT 61.237 55.000 0.00 0.00 0.00 3.55
2914 3262 0.798776 CGTGGCTGGATTTCACTGTC 59.201 55.000 0.00 0.00 0.00 3.51
2915 3263 0.798776 GTGGCTGGATTTCACTGTCG 59.201 55.000 0.00 0.00 0.00 4.35
2916 3264 0.396435 TGGCTGGATTTCACTGTCGT 59.604 50.000 0.00 0.00 0.00 4.34
2917 3265 0.798776 GGCTGGATTTCACTGTCGTG 59.201 55.000 0.00 0.00 42.59 4.35
2918 3266 0.166814 GCTGGATTTCACTGTCGTGC 59.833 55.000 0.00 0.00 40.99 5.34
2919 3267 0.439985 CTGGATTTCACTGTCGTGCG 59.560 55.000 0.00 0.00 40.99 5.34
2920 3268 0.249699 TGGATTTCACTGTCGTGCGT 60.250 50.000 0.00 0.00 40.99 5.24
2921 3269 0.163788 GGATTTCACTGTCGTGCGTG 59.836 55.000 0.00 0.00 40.99 5.34
2922 3270 1.136690 GATTTCACTGTCGTGCGTGA 58.863 50.000 0.00 0.00 40.99 4.35
2923 3271 1.525197 GATTTCACTGTCGTGCGTGAA 59.475 47.619 10.47 10.47 45.41 3.18
2924 3272 1.577468 TTTCACTGTCGTGCGTGAAT 58.423 45.000 13.68 0.00 46.06 2.57
2925 3273 1.136690 TTCACTGTCGTGCGTGAATC 58.863 50.000 10.47 0.00 43.10 2.52
2926 3274 1.001745 TCACTGTCGTGCGTGAATCG 61.002 55.000 0.00 0.00 40.99 3.34
2927 3275 1.007734 ACTGTCGTGCGTGAATCGT 60.008 52.632 0.00 0.00 42.13 3.73
2928 3276 1.002250 ACTGTCGTGCGTGAATCGTC 61.002 55.000 0.00 0.00 42.13 4.20
2929 3277 1.674611 CTGTCGTGCGTGAATCGTCC 61.675 60.000 0.00 0.00 42.13 4.79
2930 3278 2.503158 TCGTGCGTGAATCGTCCG 60.503 61.111 0.00 0.00 42.13 4.79
2931 3279 2.803670 CGTGCGTGAATCGTCCGT 60.804 61.111 0.00 0.00 42.13 4.69
2932 3280 2.769617 GTGCGTGAATCGTCCGTG 59.230 61.111 0.00 0.00 42.13 4.94
2933 3281 2.019951 GTGCGTGAATCGTCCGTGT 61.020 57.895 0.00 0.00 42.13 4.49
2934 3282 1.300311 TGCGTGAATCGTCCGTGTT 60.300 52.632 0.00 0.00 42.13 3.32
2935 3283 0.876777 TGCGTGAATCGTCCGTGTTT 60.877 50.000 0.00 0.00 42.13 2.83
2936 3284 0.233848 GCGTGAATCGTCCGTGTTTT 59.766 50.000 0.00 0.00 42.13 2.43
2937 3285 1.456544 GCGTGAATCGTCCGTGTTTTA 59.543 47.619 0.00 0.00 42.13 1.52
2938 3286 2.093152 GCGTGAATCGTCCGTGTTTTAT 59.907 45.455 0.00 0.00 42.13 1.40
2939 3287 3.779992 GCGTGAATCGTCCGTGTTTTATC 60.780 47.826 0.00 0.00 42.13 1.75
2940 3288 3.538828 CGTGAATCGTCCGTGTTTTATCG 60.539 47.826 0.00 0.00 34.52 2.92
2941 3289 3.365820 GTGAATCGTCCGTGTTTTATCGT 59.634 43.478 0.00 0.00 0.00 3.73
2942 3290 3.609373 TGAATCGTCCGTGTTTTATCGTC 59.391 43.478 0.00 0.00 0.00 4.20
2943 3291 1.981254 TCGTCCGTGTTTTATCGTCC 58.019 50.000 0.00 0.00 0.00 4.79
2944 3292 0.636733 CGTCCGTGTTTTATCGTCCG 59.363 55.000 0.00 0.00 0.00 4.79
2945 3293 1.701704 GTCCGTGTTTTATCGTCCGT 58.298 50.000 0.00 0.00 0.00 4.69
2946 3294 2.727607 CGTCCGTGTTTTATCGTCCGTA 60.728 50.000 0.00 0.00 0.00 4.02
2947 3295 3.438360 GTCCGTGTTTTATCGTCCGTAT 58.562 45.455 0.00 0.00 0.00 3.06
2948 3296 4.597079 GTCCGTGTTTTATCGTCCGTATA 58.403 43.478 0.00 0.00 0.00 1.47
2949 3297 4.672413 GTCCGTGTTTTATCGTCCGTATAG 59.328 45.833 0.00 0.00 0.00 1.31
2950 3298 3.423206 CCGTGTTTTATCGTCCGTATAGC 59.577 47.826 0.00 0.00 0.00 2.97
2951 3299 4.037021 CGTGTTTTATCGTCCGTATAGCA 58.963 43.478 0.00 0.00 0.00 3.49
2952 3300 4.085924 CGTGTTTTATCGTCCGTATAGCAC 60.086 45.833 0.00 0.00 0.00 4.40
2953 3301 5.039333 GTGTTTTATCGTCCGTATAGCACT 58.961 41.667 0.00 0.00 0.00 4.40
2954 3302 5.038683 TGTTTTATCGTCCGTATAGCACTG 58.961 41.667 0.00 0.00 0.00 3.66
2955 3303 2.983402 TATCGTCCGTATAGCACTGC 57.017 50.000 0.00 0.00 0.00 4.40
2956 3304 1.319541 ATCGTCCGTATAGCACTGCT 58.680 50.000 8.95 8.95 43.41 4.24
2957 3305 0.661552 TCGTCCGTATAGCACTGCTC 59.338 55.000 6.86 0.00 40.44 4.26
2958 3306 0.663688 CGTCCGTATAGCACTGCTCT 59.336 55.000 6.86 0.00 40.44 4.09
2959 3307 1.065701 CGTCCGTATAGCACTGCTCTT 59.934 52.381 6.86 0.00 40.44 2.85
2960 3308 2.479730 CGTCCGTATAGCACTGCTCTTT 60.480 50.000 6.86 0.00 40.44 2.52
3123 3471 2.436911 AGTTTCCAAGTCTACCGGTGTT 59.563 45.455 19.93 2.10 0.00 3.32
3124 3472 3.642848 AGTTTCCAAGTCTACCGGTGTTA 59.357 43.478 19.93 0.00 0.00 2.41
3165 3513 8.178313 TGTAATAGACAATACGAGGATCACAT 57.822 34.615 0.00 0.00 34.15 3.21
3166 3514 9.292195 TGTAATAGACAATACGAGGATCACATA 57.708 33.333 0.00 0.00 34.15 2.29
3172 3520 7.665974 AGACAATACGAGGATCACATATGTCTA 59.334 37.037 5.07 0.00 33.17 2.59
3513 3891 3.873910 ACTCCCTTCGTCCACAAATATG 58.126 45.455 0.00 0.00 0.00 1.78
3518 3896 5.104527 TCCCTTCGTCCACAAATATGAGATT 60.105 40.000 0.00 0.00 0.00 2.40
3519 3897 6.099125 TCCCTTCGTCCACAAATATGAGATTA 59.901 38.462 0.00 0.00 0.00 1.75
3620 3998 8.171840 CCGATTGAGAAAAGAAGTTAGAACATC 58.828 37.037 0.00 0.00 0.00 3.06
3948 4367 1.158007 ATCCCCTTGTTTGGTCCACT 58.842 50.000 0.00 0.00 0.00 4.00
4136 4555 8.772250 TGATCTCCTTAAAAGGTCAATCAGTAT 58.228 33.333 8.57 0.00 46.54 2.12
4226 4645 7.872993 TGATTTAGGAGACACAACTTTAGTCTG 59.127 37.037 0.00 0.00 42.29 3.51
4476 4895 4.392940 CTCTTGTTCTGGCTTATATGGGG 58.607 47.826 0.00 0.00 0.00 4.96
4656 5075 6.886459 AGCATTGATGTATACAACTGTCCTTT 59.114 34.615 10.14 0.00 0.00 3.11
4862 5281 3.758755 TGGATCCTGATGATACTGTGC 57.241 47.619 14.23 0.00 35.10 4.57
5333 5752 3.632145 ACAAGGTTTCAGTAAACTGGCTG 59.368 43.478 10.11 0.00 43.76 4.85
5559 5989 6.937465 AGTTTGTCTGAATCCTTAGAAGTTCC 59.063 38.462 0.00 0.00 0.00 3.62
5583 6013 6.055588 CGATAAATTAGTCCATTCCACCACT 58.944 40.000 0.00 0.00 0.00 4.00
5608 6038 9.834628 CTAGCTTGTAGAGTGCTTATAGATTAC 57.165 37.037 0.00 0.00 38.15 1.89
5610 6040 8.138712 AGCTTGTAGAGTGCTTATAGATTACAC 58.861 37.037 0.00 0.00 32.61 2.90
5723 6153 3.887716 TCCGAAAGAGTACAGGCTATACC 59.112 47.826 0.00 0.00 39.61 2.73
5725 6155 3.314635 CGAAAGAGTACAGGCTATACCGT 59.685 47.826 0.00 0.00 46.52 4.83
5731 6161 3.568853 AGTACAGGCTATACCGTGTCATC 59.431 47.826 0.00 0.00 46.52 2.92
5740 6170 2.846039 ACCGTGTCATCGTCAGATAC 57.154 50.000 0.00 0.00 34.85 2.24
5764 6194 3.406361 CGTGACGTGCAGCAGGAC 61.406 66.667 21.80 15.67 0.00 3.85
5800 6230 4.450053 AGAAGGAGCTAATCAACAGCATC 58.550 43.478 0.00 0.00 41.66 3.91
5812 6242 0.807667 ACAGCATCGCGGAGTTCATC 60.808 55.000 6.13 0.00 0.00 2.92
5824 6254 4.424711 TTCATCCGCAGTGGGGGC 62.425 66.667 24.76 0.00 46.30 5.80
5860 6290 2.097038 CGTGGAAGGCAGCGAGAAG 61.097 63.158 0.00 0.00 0.00 2.85
5904 6334 0.929244 ATTCCATTGTGGGAGGAGGG 59.071 55.000 0.00 0.00 38.32 4.30
5932 6362 3.508840 GAAGTTGATGGGCCGGCG 61.509 66.667 22.54 0.00 0.00 6.46
6121 6551 2.359967 GGCCAAGAGCGGGTCTAGT 61.360 63.158 10.52 0.00 45.17 2.57
6205 6635 0.108585 CCTATGCCGCCAACATACCT 59.891 55.000 0.00 0.00 0.00 3.08
6322 6759 4.079901 TCTCCGTCTGTATATATCCCCTCC 60.080 50.000 0.00 0.00 0.00 4.30
6447 6889 4.154015 TGCATTTTTGTCTATCAGGTGTCG 59.846 41.667 0.00 0.00 0.00 4.35
6718 7160 4.724399 TGTTTTGGCTTCCTTGATCTGTA 58.276 39.130 0.00 0.00 0.00 2.74
6749 7198 7.873719 TGATGTTCTTGTTCTTGTTCCTTTA 57.126 32.000 0.00 0.00 0.00 1.85
6807 7256 9.784531 ACGATCATTTCTAGATCCATACAAAAT 57.215 29.630 0.00 0.00 38.90 1.82
6836 7326 7.452880 TTTGTACTAGCATTCTTTGAAGCAT 57.547 32.000 0.00 0.00 0.00 3.79
6837 7327 6.426980 TGTACTAGCATTCTTTGAAGCATG 57.573 37.500 0.00 0.00 33.60 4.06
6839 7329 5.557891 ACTAGCATTCTTTGAAGCATGAC 57.442 39.130 7.42 0.46 32.42 3.06
6842 7332 4.744570 AGCATTCTTTGAAGCATGACATG 58.255 39.130 11.27 11.27 32.42 3.21
6847 7338 5.771153 TCTTTGAAGCATGACATGTTGAA 57.229 34.783 16.62 7.67 0.00 2.69
6854 7373 6.762187 TGAAGCATGACATGTTGAATTTTTGT 59.238 30.769 16.62 0.00 0.00 2.83
6876 7395 4.488126 AGAATGTGTCAATGTCCAAACG 57.512 40.909 0.00 0.00 0.00 3.60
6991 7530 8.758829 AGTGTAGAATGATGGTATTAAGACACA 58.241 33.333 2.17 0.00 33.66 3.72
6992 7531 8.818057 GTGTAGAATGATGGTATTAAGACACAC 58.182 37.037 2.17 1.37 32.65 3.82
6993 7532 8.536175 TGTAGAATGATGGTATTAAGACACACA 58.464 33.333 2.17 0.00 0.00 3.72
7006 7919 7.675962 TTAAGACACACATATAACACAACCC 57.324 36.000 0.00 0.00 0.00 4.11
7010 7923 6.439375 AGACACACATATAACACAACCCTAGA 59.561 38.462 0.00 0.00 0.00 2.43
7022 7935 2.814280 ACCCTAGAGTTGAACACGTG 57.186 50.000 15.48 15.48 0.00 4.49
7023 7936 2.037144 ACCCTAGAGTTGAACACGTGT 58.963 47.619 17.22 17.22 0.00 4.49
7024 7937 2.223971 ACCCTAGAGTTGAACACGTGTG 60.224 50.000 24.16 7.34 0.00 3.82
7068 7982 1.089481 ACTGTGCCGTCACACTGTTG 61.089 55.000 0.00 0.00 46.61 3.33
7070 7984 2.899838 TGCCGTCACACTGTTGGC 60.900 61.111 9.10 9.10 45.91 4.52
7072 7986 2.896801 GCCGTCACACTGTTGGCTG 61.897 63.158 8.85 0.00 42.44 4.85
7073 7987 1.227527 CCGTCACACTGTTGGCTGA 60.228 57.895 0.00 0.00 0.00 4.26
7074 7988 1.498865 CCGTCACACTGTTGGCTGAC 61.499 60.000 0.00 0.00 0.00 3.51
7076 7990 1.227527 TCACACTGTTGGCTGACCG 60.228 57.895 0.00 0.00 39.70 4.79
7077 7991 1.227527 CACACTGTTGGCTGACCGA 60.228 57.895 0.00 0.00 39.70 4.69
7137 8062 1.225475 CGAATCGTGCTTCGTGTGC 60.225 57.895 0.00 0.00 42.28 4.57
7139 8064 1.614227 GAATCGTGCTTCGTGTGCGA 61.614 55.000 0.00 0.00 46.36 5.10
7191 8116 5.521906 AAATATCTCGACTAGCTTCTGCA 57.478 39.130 0.00 0.00 42.74 4.41
7194 8119 1.886542 TCTCGACTAGCTTCTGCACAA 59.113 47.619 0.00 0.00 42.74 3.33
7207 8132 4.811555 TCTGCACAACAAGATGTACAAC 57.188 40.909 0.00 0.00 30.84 3.32
7211 8136 5.280164 TGCACAACAAGATGTACAACATTG 58.720 37.500 0.00 8.00 39.27 2.82
7214 8139 5.620822 CACAACAAGATGTACAACATTGACG 59.379 40.000 19.14 13.30 39.27 4.35
7235 8160 4.274705 ACGTGATGTTGCAAGATAACACAA 59.725 37.500 20.86 0.00 40.47 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.743636 ATTACACTCTGGTGGTCGTG 57.256 50.000 1.29 0.00 46.85 4.35
130 136 0.529555 TTTGCTTGGTCGCCTTTTGC 60.530 50.000 0.00 0.00 0.00 3.68
131 137 1.208259 GTTTGCTTGGTCGCCTTTTG 58.792 50.000 0.00 0.00 0.00 2.44
132 138 0.104120 GGTTTGCTTGGTCGCCTTTT 59.896 50.000 0.00 0.00 0.00 2.27
133 139 1.739667 GGTTTGCTTGGTCGCCTTT 59.260 52.632 0.00 0.00 0.00 3.11
134 140 2.200337 GGGTTTGCTTGGTCGCCTT 61.200 57.895 0.00 0.00 0.00 4.35
135 141 2.597510 GGGTTTGCTTGGTCGCCT 60.598 61.111 0.00 0.00 0.00 5.52
136 142 3.680786 GGGGTTTGCTTGGTCGCC 61.681 66.667 0.00 0.00 0.00 5.54
137 143 2.909965 TGGGGTTTGCTTGGTCGC 60.910 61.111 0.00 0.00 0.00 5.19
138 144 2.919494 GCTGGGGTTTGCTTGGTCG 61.919 63.158 0.00 0.00 0.00 4.79
139 145 2.919494 CGCTGGGGTTTGCTTGGTC 61.919 63.158 0.00 0.00 0.00 4.02
140 146 2.912025 CGCTGGGGTTTGCTTGGT 60.912 61.111 0.00 0.00 0.00 3.67
141 147 1.743321 TTTCGCTGGGGTTTGCTTGG 61.743 55.000 0.00 0.00 0.00 3.61
142 148 0.103937 TTTTCGCTGGGGTTTGCTTG 59.896 50.000 0.00 0.00 0.00 4.01
143 149 0.389025 CTTTTCGCTGGGGTTTGCTT 59.611 50.000 0.00 0.00 0.00 3.91
144 150 2.041153 CTTTTCGCTGGGGTTTGCT 58.959 52.632 0.00 0.00 0.00 3.91
145 151 1.664649 GCTTTTCGCTGGGGTTTGC 60.665 57.895 0.00 0.00 35.14 3.68
146 152 0.597377 GTGCTTTTCGCTGGGGTTTG 60.597 55.000 0.00 0.00 40.11 2.93
147 153 1.040339 TGTGCTTTTCGCTGGGGTTT 61.040 50.000 0.00 0.00 40.11 3.27
148 154 0.827507 ATGTGCTTTTCGCTGGGGTT 60.828 50.000 0.00 0.00 40.11 4.11
149 155 1.228552 ATGTGCTTTTCGCTGGGGT 60.229 52.632 0.00 0.00 40.11 4.95
150 156 1.213537 CATGTGCTTTTCGCTGGGG 59.786 57.895 0.00 0.00 40.11 4.96
151 157 1.444895 GCATGTGCTTTTCGCTGGG 60.445 57.895 0.00 0.00 40.11 4.45
152 158 1.444895 GGCATGTGCTTTTCGCTGG 60.445 57.895 4.84 0.00 41.70 4.85
153 159 1.444895 GGGCATGTGCTTTTCGCTG 60.445 57.895 4.84 0.00 41.70 5.18
154 160 2.639327 GGGGCATGTGCTTTTCGCT 61.639 57.895 4.84 0.00 41.70 4.93
155 161 2.125952 GGGGCATGTGCTTTTCGC 60.126 61.111 4.84 0.00 41.70 4.70
156 162 2.179018 CGGGGCATGTGCTTTTCG 59.821 61.111 4.84 1.10 41.70 3.46
202 208 1.313091 TGTCACGCCTGCGACTATCT 61.313 55.000 19.52 0.00 42.83 1.98
206 212 2.916502 TTTGTGTCACGCCTGCGACT 62.917 55.000 19.52 0.00 42.83 4.18
214 220 2.725815 GCGGCTTTTGTGTCACGC 60.726 61.111 0.00 0.00 40.19 5.34
217 223 2.539338 GGTCGCGGCTTTTGTGTCA 61.539 57.895 11.94 0.00 0.00 3.58
220 226 2.051345 GTGGTCGCGGCTTTTGTG 60.051 61.111 11.94 0.00 0.00 3.33
281 287 1.009389 GGCGGACGGATCGATCAATC 61.009 60.000 25.93 20.49 0.00 2.67
282 288 1.006102 GGCGGACGGATCGATCAAT 60.006 57.895 25.93 13.60 0.00 2.57
283 289 2.415843 GGCGGACGGATCGATCAA 59.584 61.111 25.93 0.00 0.00 2.57
284 290 3.602677 GGGCGGACGGATCGATCA 61.603 66.667 25.93 0.00 0.00 2.92
323 348 1.069935 GGAGCGGATCCTTGTAGCC 59.930 63.158 10.75 0.00 45.64 3.93
405 430 3.545574 TAGATGCGGGATGGCGCA 61.546 61.111 10.83 0.00 45.38 6.09
458 490 3.989787 GCCAACCAACCAAGCGGG 61.990 66.667 0.00 0.00 44.81 6.13
490 522 1.599606 GCGGAGAGACTGGAGAGCAA 61.600 60.000 0.00 0.00 0.00 3.91
519 551 0.463833 ACTTATTGGGCTGGCTACGC 60.464 55.000 0.00 0.00 0.00 4.42
520 552 1.134521 TGACTTATTGGGCTGGCTACG 60.135 52.381 0.00 0.00 0.00 3.51
521 553 2.565841 CTGACTTATTGGGCTGGCTAC 58.434 52.381 0.00 0.00 0.00 3.58
522 554 1.490490 CCTGACTTATTGGGCTGGCTA 59.510 52.381 0.00 0.00 0.00 3.93
523 555 0.257039 CCTGACTTATTGGGCTGGCT 59.743 55.000 0.00 0.00 0.00 4.75
524 556 0.753111 CCCTGACTTATTGGGCTGGC 60.753 60.000 0.00 0.00 33.88 4.85
525 557 0.625849 ACCCTGACTTATTGGGCTGG 59.374 55.000 0.00 0.00 44.56 4.85
526 558 1.683011 CCACCCTGACTTATTGGGCTG 60.683 57.143 0.00 0.00 44.56 4.85
527 559 0.625849 CCACCCTGACTTATTGGGCT 59.374 55.000 0.00 0.00 44.56 5.19
528 560 0.331616 ACCACCCTGACTTATTGGGC 59.668 55.000 0.00 0.00 44.56 5.36
529 561 1.064685 GGACCACCCTGACTTATTGGG 60.065 57.143 0.00 0.00 46.07 4.12
530 562 1.633432 TGGACCACCCTGACTTATTGG 59.367 52.381 0.00 0.00 35.38 3.16
531 563 2.711542 GTGGACCACCCTGACTTATTG 58.288 52.381 14.16 0.00 35.38 1.90
597 629 9.548631 TGGAATTTCCCCATAGTGTATTAAAAA 57.451 29.630 12.90 0.00 35.03 1.94
598 630 9.196139 CTGGAATTTCCCCATAGTGTATTAAAA 57.804 33.333 12.90 0.00 35.03 1.52
599 631 7.782644 CCTGGAATTTCCCCATAGTGTATTAAA 59.217 37.037 12.90 0.00 35.03 1.52
600 632 7.294584 CCTGGAATTTCCCCATAGTGTATTAA 58.705 38.462 12.90 0.00 35.03 1.40
601 633 6.183361 CCCTGGAATTTCCCCATAGTGTATTA 60.183 42.308 12.90 0.00 35.03 0.98
602 634 5.400189 CCCTGGAATTTCCCCATAGTGTATT 60.400 44.000 12.90 0.00 35.03 1.89
603 635 4.106341 CCCTGGAATTTCCCCATAGTGTAT 59.894 45.833 12.90 0.00 35.03 2.29
604 636 3.461831 CCCTGGAATTTCCCCATAGTGTA 59.538 47.826 12.90 0.00 35.03 2.90
605 637 2.244769 CCCTGGAATTTCCCCATAGTGT 59.755 50.000 12.90 0.00 35.03 3.55
606 638 2.244769 ACCCTGGAATTTCCCCATAGTG 59.755 50.000 12.90 0.00 35.03 2.74
607 639 2.244769 CACCCTGGAATTTCCCCATAGT 59.755 50.000 12.90 1.12 35.03 2.12
608 640 2.424812 CCACCCTGGAATTTCCCCATAG 60.425 54.545 12.90 3.52 40.96 2.23
609 641 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
610 642 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
611 643 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
612 644 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
613 645 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
614 646 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
615 647 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
616 648 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
632 664 3.660571 TGGCCAGGGTGGTCCATG 61.661 66.667 0.00 0.00 42.76 3.66
633 665 3.661648 GTGGCCAGGGTGGTCCAT 61.662 66.667 5.11 0.00 42.76 3.41
640 672 4.760220 CTAGGGGGTGGCCAGGGT 62.760 72.222 5.11 0.00 0.00 4.34
642 674 3.714078 TAGCTAGGGGGTGGCCAGG 62.714 68.421 5.11 0.00 31.44 4.45
643 675 2.040884 TAGCTAGGGGGTGGCCAG 60.041 66.667 5.11 0.00 31.44 4.85
644 676 2.366435 GTAGCTAGGGGGTGGCCA 60.366 66.667 0.00 0.00 31.44 5.36
645 677 3.547513 CGTAGCTAGGGGGTGGCC 61.548 72.222 5.50 0.00 31.44 5.36
671 703 3.623703 GAAGGGAACAGGGTCGGGC 62.624 68.421 0.00 0.00 0.00 6.13
672 704 2.221299 TGAAGGGAACAGGGTCGGG 61.221 63.158 0.00 0.00 0.00 5.14
673 705 1.003718 GTGAAGGGAACAGGGTCGG 60.004 63.158 0.00 0.00 0.00 4.79
674 706 0.396811 AAGTGAAGGGAACAGGGTCG 59.603 55.000 0.00 0.00 0.00 4.79
675 707 1.143073 ACAAGTGAAGGGAACAGGGTC 59.857 52.381 0.00 0.00 0.00 4.46
774 818 2.124942 GCTTTGCTCCTCCTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
841 888 1.365699 TTTATCGCCTTGGACGCTTC 58.634 50.000 0.00 0.00 0.00 3.86
1032 1079 3.649277 CTCACTCACCTTCCGCGGG 62.649 68.421 27.83 12.37 0.00 6.13
1058 1105 2.029844 AAGAAACCAGAGCGCTCGC 61.030 57.895 30.39 16.45 42.33 5.03
1059 1106 1.630244 CCAAGAAACCAGAGCGCTCG 61.630 60.000 30.39 23.65 34.09 5.03
1060 1107 0.320771 TCCAAGAAACCAGAGCGCTC 60.321 55.000 30.01 30.01 0.00 5.03
1061 1108 0.326264 ATCCAAGAAACCAGAGCGCT 59.674 50.000 11.27 11.27 0.00 5.92
1483 1551 3.458163 TCGTCCGCCATGAGGTCC 61.458 66.667 0.00 0.00 37.19 4.46
1574 1645 2.511145 GAAGAGCAGCAGGAGCCG 60.511 66.667 0.00 0.00 43.56 5.52
1609 1680 3.333189 CCGTCGCCGATGAGCATG 61.333 66.667 8.12 0.00 35.63 4.06
1872 1957 7.573968 AATGATAAACCAGCTCAATAGGAAC 57.426 36.000 0.00 0.00 0.00 3.62
1910 2003 5.567138 ATCAAACATAGCAAGTTAGCACC 57.433 39.130 0.00 0.00 36.85 5.01
1913 2006 6.194796 TCCAATCAAACATAGCAAGTTAGC 57.805 37.500 0.00 0.00 0.00 3.09
2044 2147 4.278419 GCAAAGATAAACCCAACTCTGTGT 59.722 41.667 0.00 0.00 0.00 3.72
2119 2222 2.556766 TGGTGGTTCCAGTGGATGATA 58.443 47.619 14.00 0.00 41.93 2.15
2173 2276 5.789643 TTTGGGTCTTCTTGAGAAATTGG 57.210 39.130 0.00 0.00 35.79 3.16
2176 2279 5.899547 ACCTTTTTGGGTCTTCTTGAGAAAT 59.100 36.000 0.00 0.00 41.11 2.17
2207 2310 1.444933 AGGATTCCACCCAGTGACAA 58.555 50.000 5.29 0.00 35.23 3.18
2296 2403 5.813672 ACGTCTGTGTTTTTGTGTGTAGTAT 59.186 36.000 0.00 0.00 0.00 2.12
2298 2405 3.998341 ACGTCTGTGTTTTTGTGTGTAGT 59.002 39.130 0.00 0.00 0.00 2.73
2309 2416 6.072112 AGCATTTCAAATACGTCTGTGTTT 57.928 33.333 0.00 0.00 39.64 2.83
2319 2426 7.141363 CCTGCAGGTAATAGCATTTCAAATAC 58.859 38.462 25.53 0.00 40.42 1.89
2400 2507 1.406477 GGGGTATCACCGAAACAGTCC 60.406 57.143 0.00 0.00 39.83 3.85
2484 2591 5.957798 TCCTCTTTGAATTGATTCATGCAC 58.042 37.500 7.20 0.00 45.30 4.57
2566 2673 2.104451 TGGTTTGCGTCACCCTAACTTA 59.896 45.455 0.00 0.00 32.71 2.24
2602 2950 8.306313 TCAACTTAATCACTTGAGCCTATAGA 57.694 34.615 0.00 0.00 0.00 1.98
2603 2951 8.821894 GTTCAACTTAATCACTTGAGCCTATAG 58.178 37.037 0.00 0.00 0.00 1.31
2604 2952 8.318412 TGTTCAACTTAATCACTTGAGCCTATA 58.682 33.333 0.00 0.00 0.00 1.31
2605 2953 7.168219 TGTTCAACTTAATCACTTGAGCCTAT 58.832 34.615 0.00 0.00 0.00 2.57
2606 2954 6.530120 TGTTCAACTTAATCACTTGAGCCTA 58.470 36.000 0.00 0.00 0.00 3.93
2607 2955 5.376625 TGTTCAACTTAATCACTTGAGCCT 58.623 37.500 0.00 0.00 0.00 4.58
2709 3057 8.626917 TTAGTAGGGTGTTATCAAGGGATTAA 57.373 34.615 0.00 0.00 34.89 1.40
2711 3059 7.707467 ATTAGTAGGGTGTTATCAAGGGATT 57.293 36.000 0.00 0.00 34.89 3.01
2756 3104 3.644738 ACCTCGTACTTTGAAAAGAGGGA 59.355 43.478 16.86 2.97 46.87 4.20
2805 3153 3.916172 TCGTGTGTATAGCAGTTTCGAAC 59.084 43.478 0.00 0.00 0.00 3.95
2806 3154 4.163458 TCGTGTGTATAGCAGTTTCGAA 57.837 40.909 0.00 0.00 0.00 3.71
2807 3155 3.835378 TCGTGTGTATAGCAGTTTCGA 57.165 42.857 0.00 0.00 0.00 3.71
2808 3156 6.563398 TTTATCGTGTGTATAGCAGTTTCG 57.437 37.500 0.00 0.00 0.00 3.46
2809 3157 6.900299 GCTTTTATCGTGTGTATAGCAGTTTC 59.100 38.462 0.00 0.00 0.00 2.78
2810 3158 6.370442 TGCTTTTATCGTGTGTATAGCAGTTT 59.630 34.615 0.00 0.00 32.94 2.66
2811 3159 5.872617 TGCTTTTATCGTGTGTATAGCAGTT 59.127 36.000 0.00 0.00 32.94 3.16
2812 3160 5.416083 TGCTTTTATCGTGTGTATAGCAGT 58.584 37.500 0.00 0.00 32.94 4.40
2813 3161 5.966636 TGCTTTTATCGTGTGTATAGCAG 57.033 39.130 0.00 0.00 32.94 4.24
2814 3162 7.381408 GTCTATGCTTTTATCGTGTGTATAGCA 59.619 37.037 0.00 0.00 41.08 3.49
2815 3163 7.409449 CGTCTATGCTTTTATCGTGTGTATAGC 60.409 40.741 0.00 0.00 0.00 2.97
2816 3164 7.801783 TCGTCTATGCTTTTATCGTGTGTATAG 59.198 37.037 0.00 0.00 0.00 1.31
2817 3165 7.641760 TCGTCTATGCTTTTATCGTGTGTATA 58.358 34.615 0.00 0.00 0.00 1.47
2818 3166 6.500910 TCGTCTATGCTTTTATCGTGTGTAT 58.499 36.000 0.00 0.00 0.00 2.29
2819 3167 5.882553 TCGTCTATGCTTTTATCGTGTGTA 58.117 37.500 0.00 0.00 0.00 2.90
2820 3168 4.740268 TCGTCTATGCTTTTATCGTGTGT 58.260 39.130 0.00 0.00 0.00 3.72
2821 3169 5.232202 ACATCGTCTATGCTTTTATCGTGTG 59.768 40.000 0.00 0.00 39.39 3.82
2822 3170 5.232202 CACATCGTCTATGCTTTTATCGTGT 59.768 40.000 0.00 0.00 39.39 4.49
2823 3171 5.458779 TCACATCGTCTATGCTTTTATCGTG 59.541 40.000 0.00 0.00 39.39 4.35
2824 3172 5.588240 TCACATCGTCTATGCTTTTATCGT 58.412 37.500 0.00 0.00 39.39 3.73
2825 3173 6.417930 TCTTCACATCGTCTATGCTTTTATCG 59.582 38.462 0.00 0.00 39.39 2.92
2826 3174 7.559845 GTCTTCACATCGTCTATGCTTTTATC 58.440 38.462 0.00 0.00 39.39 1.75
2827 3175 6.199154 CGTCTTCACATCGTCTATGCTTTTAT 59.801 38.462 0.00 0.00 39.39 1.40
2828 3176 5.515270 CGTCTTCACATCGTCTATGCTTTTA 59.485 40.000 0.00 0.00 39.39 1.52
2829 3177 4.327357 CGTCTTCACATCGTCTATGCTTTT 59.673 41.667 0.00 0.00 39.39 2.27
2830 3178 3.859961 CGTCTTCACATCGTCTATGCTTT 59.140 43.478 0.00 0.00 39.39 3.51
2831 3179 3.128764 TCGTCTTCACATCGTCTATGCTT 59.871 43.478 0.00 0.00 39.39 3.91
2832 3180 2.683362 TCGTCTTCACATCGTCTATGCT 59.317 45.455 0.00 0.00 39.39 3.79
2833 3181 2.784380 GTCGTCTTCACATCGTCTATGC 59.216 50.000 0.00 0.00 39.39 3.14
2834 3182 4.280101 AGTCGTCTTCACATCGTCTATG 57.720 45.455 0.00 0.00 41.74 2.23
2835 3183 5.585445 ACTTAGTCGTCTTCACATCGTCTAT 59.415 40.000 0.00 0.00 0.00 1.98
2836 3184 4.934001 ACTTAGTCGTCTTCACATCGTCTA 59.066 41.667 0.00 0.00 0.00 2.59
2837 3185 3.752222 ACTTAGTCGTCTTCACATCGTCT 59.248 43.478 0.00 0.00 0.00 4.18
2838 3186 4.080969 ACTTAGTCGTCTTCACATCGTC 57.919 45.455 0.00 0.00 0.00 4.20
2839 3187 5.220815 GGATACTTAGTCGTCTTCACATCGT 60.221 44.000 0.00 0.00 0.00 3.73
2840 3188 5.206299 GGATACTTAGTCGTCTTCACATCG 58.794 45.833 0.00 0.00 0.00 3.84
2841 3189 5.206299 CGGATACTTAGTCGTCTTCACATC 58.794 45.833 0.00 0.00 0.00 3.06
2842 3190 4.036498 CCGGATACTTAGTCGTCTTCACAT 59.964 45.833 0.00 0.00 0.00 3.21
2843 3191 3.376234 CCGGATACTTAGTCGTCTTCACA 59.624 47.826 0.00 0.00 0.00 3.58
2844 3192 3.791455 GCCGGATACTTAGTCGTCTTCAC 60.791 52.174 5.05 0.00 0.00 3.18
2845 3193 2.357009 GCCGGATACTTAGTCGTCTTCA 59.643 50.000 5.05 0.00 0.00 3.02
2846 3194 2.601741 CGCCGGATACTTAGTCGTCTTC 60.602 54.545 5.05 0.00 0.00 2.87
2847 3195 1.332997 CGCCGGATACTTAGTCGTCTT 59.667 52.381 5.05 0.00 0.00 3.01
2848 3196 0.942962 CGCCGGATACTTAGTCGTCT 59.057 55.000 5.05 0.00 0.00 4.18
2849 3197 0.040603 CCGCCGGATACTTAGTCGTC 60.041 60.000 5.05 0.00 0.00 4.20
2850 3198 2.028130 CCGCCGGATACTTAGTCGT 58.972 57.895 5.05 0.00 0.00 4.34
2851 3199 1.371389 GCCGCCGGATACTTAGTCG 60.371 63.158 7.68 0.00 0.00 4.18
2852 3200 1.006454 GGCCGCCGGATACTTAGTC 60.006 63.158 7.68 0.00 0.00 2.59
2853 3201 2.853290 CGGCCGCCGGATACTTAGT 61.853 63.158 24.66 0.00 44.15 2.24
2854 3202 2.049433 CGGCCGCCGGATACTTAG 60.049 66.667 24.66 0.00 44.15 2.18
2867 3215 3.712907 TACAGGGGAGCAACGGCC 61.713 66.667 0.00 0.00 42.56 6.13
2868 3216 2.436115 GTACAGGGGAGCAACGGC 60.436 66.667 0.00 0.00 41.61 5.68
2869 3217 1.079127 CTGTACAGGGGAGCAACGG 60.079 63.158 15.49 0.00 0.00 4.44
2870 3218 1.741770 GCTGTACAGGGGAGCAACG 60.742 63.158 23.95 0.00 32.70 4.10
2871 3219 0.674895 CAGCTGTACAGGGGAGCAAC 60.675 60.000 23.95 4.97 35.03 4.17
2872 3220 1.679311 CAGCTGTACAGGGGAGCAA 59.321 57.895 23.95 0.00 35.03 3.91
2873 3221 2.959484 GCAGCTGTACAGGGGAGCA 61.959 63.158 23.95 0.00 35.03 4.26
2874 3222 2.124942 GCAGCTGTACAGGGGAGC 60.125 66.667 23.95 10.36 0.00 4.70
2875 3223 0.463295 CATGCAGCTGTACAGGGGAG 60.463 60.000 23.95 0.00 0.00 4.30
2876 3224 1.603842 CATGCAGCTGTACAGGGGA 59.396 57.895 23.95 0.00 0.00 4.81
2877 3225 2.117156 GCATGCAGCTGTACAGGGG 61.117 63.158 23.95 0.22 41.15 4.79
2878 3226 2.466982 CGCATGCAGCTGTACAGGG 61.467 63.158 23.95 11.71 42.61 4.45
2879 3227 1.742880 ACGCATGCAGCTGTACAGG 60.743 57.895 23.95 8.60 42.61 4.00
2880 3228 1.422662 CACGCATGCAGCTGTACAG 59.577 57.895 18.93 18.93 42.61 2.74
2881 3229 2.034317 CCACGCATGCAGCTGTACA 61.034 57.895 19.57 5.99 42.61 2.90
2882 3230 2.787249 CCACGCATGCAGCTGTAC 59.213 61.111 19.57 0.00 42.61 2.90
2883 3231 3.126879 GCCACGCATGCAGCTGTA 61.127 61.111 19.57 12.13 42.61 2.74
2885 3233 4.476410 CAGCCACGCATGCAGCTG 62.476 66.667 28.96 28.96 45.92 4.24
2888 3236 1.940883 AAATCCAGCCACGCATGCAG 61.941 55.000 19.57 12.98 0.00 4.41
2889 3237 1.936436 GAAATCCAGCCACGCATGCA 61.936 55.000 19.57 0.00 0.00 3.96
2890 3238 1.226773 GAAATCCAGCCACGCATGC 60.227 57.895 7.91 7.91 0.00 4.06
2891 3239 0.179156 GTGAAATCCAGCCACGCATG 60.179 55.000 0.00 0.00 0.00 4.06
2892 3240 0.322816 AGTGAAATCCAGCCACGCAT 60.323 50.000 0.00 0.00 36.06 4.73
2893 3241 1.073025 AGTGAAATCCAGCCACGCA 59.927 52.632 0.00 0.00 36.06 5.24
2894 3242 1.237285 ACAGTGAAATCCAGCCACGC 61.237 55.000 0.00 0.00 36.06 5.34
2895 3243 0.798776 GACAGTGAAATCCAGCCACG 59.201 55.000 0.00 0.00 36.06 4.94
2896 3244 0.798776 CGACAGTGAAATCCAGCCAC 59.201 55.000 0.00 0.00 0.00 5.01
2897 3245 0.396435 ACGACAGTGAAATCCAGCCA 59.604 50.000 0.00 0.00 0.00 4.75
2898 3246 3.233355 ACGACAGTGAAATCCAGCC 57.767 52.632 0.00 0.00 0.00 4.85
2909 3257 1.002250 GACGATTCACGCACGACAGT 61.002 55.000 0.00 0.00 46.94 3.55
2910 3258 1.674611 GGACGATTCACGCACGACAG 61.675 60.000 0.00 0.00 46.94 3.51
2911 3259 1.731613 GGACGATTCACGCACGACA 60.732 57.895 0.00 0.00 46.94 4.35
2912 3260 2.774951 CGGACGATTCACGCACGAC 61.775 63.158 0.00 0.00 46.94 4.34
2913 3261 2.503158 CGGACGATTCACGCACGA 60.503 61.111 0.00 0.00 46.94 4.35
2914 3262 2.803670 ACGGACGATTCACGCACG 60.804 61.111 0.00 0.00 46.94 5.34
2915 3263 1.554042 AACACGGACGATTCACGCAC 61.554 55.000 0.00 0.00 46.94 5.34
2916 3264 0.876777 AAACACGGACGATTCACGCA 60.877 50.000 0.00 0.00 46.94 5.24
2917 3265 0.233848 AAAACACGGACGATTCACGC 59.766 50.000 0.00 0.00 46.94 5.34
2919 3267 3.365820 ACGATAAAACACGGACGATTCAC 59.634 43.478 0.00 0.00 0.00 3.18
2920 3268 3.577667 ACGATAAAACACGGACGATTCA 58.422 40.909 0.00 0.00 0.00 2.57
2921 3269 3.000376 GGACGATAAAACACGGACGATTC 60.000 47.826 0.00 0.00 0.00 2.52
2922 3270 2.925563 GGACGATAAAACACGGACGATT 59.074 45.455 0.00 0.00 0.00 3.34
2923 3271 2.533266 GGACGATAAAACACGGACGAT 58.467 47.619 0.00 0.00 0.00 3.73
2924 3272 1.728825 CGGACGATAAAACACGGACGA 60.729 52.381 0.00 0.00 35.88 4.20
2925 3273 0.636733 CGGACGATAAAACACGGACG 59.363 55.000 0.00 0.00 0.00 4.79
2926 3274 1.701704 ACGGACGATAAAACACGGAC 58.298 50.000 0.00 0.00 0.00 4.79
2927 3275 3.781079 ATACGGACGATAAAACACGGA 57.219 42.857 0.00 0.00 0.00 4.69
2928 3276 3.423206 GCTATACGGACGATAAAACACGG 59.577 47.826 0.00 0.00 0.00 4.94
2929 3277 4.037021 TGCTATACGGACGATAAAACACG 58.963 43.478 0.00 0.00 0.00 4.49
2930 3278 5.039333 AGTGCTATACGGACGATAAAACAC 58.961 41.667 0.00 0.16 39.22 3.32
2931 3279 5.038683 CAGTGCTATACGGACGATAAAACA 58.961 41.667 0.00 0.00 39.22 2.83
2932 3280 4.085210 GCAGTGCTATACGGACGATAAAAC 60.085 45.833 8.18 0.00 39.22 2.43
2933 3281 4.046462 GCAGTGCTATACGGACGATAAAA 58.954 43.478 8.18 0.00 39.22 1.52
2934 3282 3.317149 AGCAGTGCTATACGGACGATAAA 59.683 43.478 18.11 0.00 36.99 1.40
2935 3283 2.882761 AGCAGTGCTATACGGACGATAA 59.117 45.455 18.11 0.00 36.99 1.75
2936 3284 2.483106 GAGCAGTGCTATACGGACGATA 59.517 50.000 19.77 0.00 39.88 2.92
2937 3285 1.267261 GAGCAGTGCTATACGGACGAT 59.733 52.381 19.77 0.00 39.88 3.73
2938 3286 0.661552 GAGCAGTGCTATACGGACGA 59.338 55.000 19.77 0.00 39.88 4.20
2939 3287 0.663688 AGAGCAGTGCTATACGGACG 59.336 55.000 19.77 0.00 39.88 4.79
2940 3288 2.873133 AAGAGCAGTGCTATACGGAC 57.127 50.000 19.77 3.33 39.88 4.79
2941 3289 3.024547 AGAAAGAGCAGTGCTATACGGA 58.975 45.455 19.77 0.00 39.88 4.69
2942 3290 3.444703 AGAAAGAGCAGTGCTATACGG 57.555 47.619 19.77 0.00 39.88 4.02
2943 3291 4.177026 ACAAGAAAGAGCAGTGCTATACG 58.823 43.478 19.77 5.74 39.88 3.06
2944 3292 6.814146 AGTAACAAGAAAGAGCAGTGCTATAC 59.186 38.462 19.77 12.76 39.88 1.47
2945 3293 6.936279 AGTAACAAGAAAGAGCAGTGCTATA 58.064 36.000 19.77 0.00 39.88 1.31
2946 3294 5.799213 AGTAACAAGAAAGAGCAGTGCTAT 58.201 37.500 19.77 13.17 39.88 2.97
2947 3295 5.215252 AGTAACAAGAAAGAGCAGTGCTA 57.785 39.130 19.77 0.00 39.88 3.49
2948 3296 4.078639 AGTAACAAGAAAGAGCAGTGCT 57.921 40.909 19.86 19.86 43.88 4.40
2949 3297 5.163814 CCATAGTAACAAGAAAGAGCAGTGC 60.164 44.000 7.13 7.13 0.00 4.40
2950 3298 5.934625 ACCATAGTAACAAGAAAGAGCAGTG 59.065 40.000 0.00 0.00 0.00 3.66
2951 3299 6.115448 ACCATAGTAACAAGAAAGAGCAGT 57.885 37.500 0.00 0.00 0.00 4.40
2952 3300 6.650807 TCAACCATAGTAACAAGAAAGAGCAG 59.349 38.462 0.00 0.00 0.00 4.24
2953 3301 6.530120 TCAACCATAGTAACAAGAAAGAGCA 58.470 36.000 0.00 0.00 0.00 4.26
2954 3302 7.334421 TCATCAACCATAGTAACAAGAAAGAGC 59.666 37.037 0.00 0.00 0.00 4.09
2955 3303 8.660373 GTCATCAACCATAGTAACAAGAAAGAG 58.340 37.037 0.00 0.00 0.00 2.85
2956 3304 8.547967 GTCATCAACCATAGTAACAAGAAAGA 57.452 34.615 0.00 0.00 0.00 2.52
3090 3438 1.078356 GGAAACTCTCCTTCGGGCC 60.078 63.158 0.00 0.00 41.61 5.80
3094 3442 3.669251 AGACTTGGAAACTCTCCTTCG 57.331 47.619 0.00 0.00 45.64 3.79
3116 3464 2.612000 TCCCCCAGTATATAACACCGG 58.388 52.381 0.00 0.00 0.00 5.28
3123 3471 9.263446 GTCTATTACAACATCCCCCAGTATATA 57.737 37.037 0.00 0.00 0.00 0.86
3124 3472 7.737607 TGTCTATTACAACATCCCCCAGTATAT 59.262 37.037 0.00 0.00 34.29 0.86
3925 4344 4.093743 GTGGACCAAACAAGGGGATAAAT 58.906 43.478 0.00 0.00 0.00 1.40
3948 4367 6.836527 TGAAGGAAGGAAAGAACAAATGGTAA 59.163 34.615 0.00 0.00 0.00 2.85
4320 4739 5.552870 AAAAGCTGGAACTCTGTAGAAGA 57.447 39.130 0.00 0.00 0.00 2.87
4415 4834 2.959516 TGAACGCAATCTGATCGAAGT 58.040 42.857 5.85 0.00 0.00 3.01
4476 4895 1.898472 TGAGAGATATAGGCAGCCTGC 59.102 52.381 25.59 8.55 44.08 4.85
4656 5075 4.985538 ACAGGCCATCTGAGTTTTTCTAA 58.014 39.130 5.01 0.00 46.18 2.10
4862 5281 2.717639 AGCCAATAGTAACAGCCAGG 57.282 50.000 0.00 0.00 0.00 4.45
5333 5752 1.072505 TGAAGGGCCGAGGTTCAAC 59.927 57.895 3.65 0.00 0.00 3.18
5559 5989 6.055588 AGTGGTGGAATGGACTAATTTATCG 58.944 40.000 0.00 0.00 0.00 2.92
5583 6013 9.350951 TGTAATCTATAAGCACTCTACAAGCTA 57.649 33.333 0.00 0.00 37.70 3.32
5608 6038 4.451900 AGACCAGTACCTGTTCAAAAGTG 58.548 43.478 0.00 0.00 0.00 3.16
5610 6040 5.823045 AGAAAGACCAGTACCTGTTCAAAAG 59.177 40.000 0.00 0.00 0.00 2.27
5635 6065 4.037446 GGCACTGGAACTGATTTAACACAA 59.963 41.667 0.00 0.00 0.00 3.33
5752 6182 4.363990 AGGTCGTCCTGCTGCACG 62.364 66.667 0.00 0.00 43.33 5.34
5764 6194 1.618837 TCCTTCTCAAACTCCAGGTCG 59.381 52.381 0.00 0.00 0.00 4.79
5770 6200 5.091261 TGATTAGCTCCTTCTCAAACTCC 57.909 43.478 0.00 0.00 0.00 3.85
5773 6203 5.391416 GCTGTTGATTAGCTCCTTCTCAAAC 60.391 44.000 0.00 0.00 38.14 2.93
5836 6266 3.121030 CTGCCTTCCACGAAGCCG 61.121 66.667 0.00 0.00 38.24 5.52
5842 6272 2.048222 TTCTCGCTGCCTTCCACG 60.048 61.111 0.00 0.00 0.00 4.94
5860 6290 0.599728 CGCTGCTAATGGAGGAGAGC 60.600 60.000 0.00 0.00 46.32 4.09
5904 6334 0.949105 ATCAACTTCACCGTCACCGC 60.949 55.000 0.00 0.00 0.00 5.68
5977 6407 1.604278 AGCACAAACCTCGCTTTCTTC 59.396 47.619 0.00 0.00 29.87 2.87
6447 6889 2.866156 GCCAACTCAACAAAAGGCTTTC 59.134 45.455 13.76 0.00 39.02 2.62
6667 7109 2.441750 ACTTAACCCAAGGCTTGACAGA 59.558 45.455 28.18 8.17 38.70 3.41
6718 7160 3.825328 AGAACAAGAACATCAACAGCCT 58.175 40.909 0.00 0.00 0.00 4.58
6749 7198 3.910627 AGACTTCCAGTTCCACCAGTAAT 59.089 43.478 0.00 0.00 0.00 1.89
6822 7312 6.153756 TCAACATGTCATGCTTCAAAGAATG 58.846 36.000 12.91 4.56 42.44 2.67
6836 7326 9.247126 CACATTCTACAAAAATTCAACATGTCA 57.753 29.630 0.00 0.00 0.00 3.58
6837 7327 9.248291 ACACATTCTACAAAAATTCAACATGTC 57.752 29.630 0.00 0.00 0.00 3.06
6839 7329 9.247126 TGACACATTCTACAAAAATTCAACATG 57.753 29.630 0.00 0.00 0.00 3.21
6847 7338 7.950512 TGGACATTGACACATTCTACAAAAAT 58.049 30.769 0.00 0.00 0.00 1.82
6854 7373 5.178623 GTCGTTTGGACATTGACACATTCTA 59.821 40.000 0.00 0.00 45.36 2.10
6876 7395 8.035394 TCTACTCTTATTTGTGAGGAATGTGTC 58.965 37.037 0.00 0.00 34.84 3.67
6914 7433 3.843027 ACATTTCCATTTGGCACCCAATA 59.157 39.130 0.00 0.00 43.55 1.90
6948 7467 6.228258 TCTACACTAGTGCCAAAAAGGTAAG 58.772 40.000 22.90 3.82 40.61 2.34
6987 7526 6.212791 ACTCTAGGGTTGTGTTATATGTGTGT 59.787 38.462 0.00 0.00 0.00 3.72
6988 7527 6.640518 ACTCTAGGGTTGTGTTATATGTGTG 58.359 40.000 0.00 0.00 0.00 3.82
6989 7528 6.869206 ACTCTAGGGTTGTGTTATATGTGT 57.131 37.500 0.00 0.00 0.00 3.72
6990 7529 7.327975 TCAACTCTAGGGTTGTGTTATATGTG 58.672 38.462 30.00 5.91 44.66 3.21
6991 7530 7.490657 TCAACTCTAGGGTTGTGTTATATGT 57.509 36.000 30.00 0.00 44.66 2.29
6992 7531 7.822334 TGTTCAACTCTAGGGTTGTGTTATATG 59.178 37.037 30.00 7.12 44.66 1.78
6993 7532 7.822822 GTGTTCAACTCTAGGGTTGTGTTATAT 59.177 37.037 30.00 0.00 44.66 0.86
6995 7534 5.995897 GTGTTCAACTCTAGGGTTGTGTTAT 59.004 40.000 30.00 0.00 44.66 1.89
6997 7536 4.196971 GTGTTCAACTCTAGGGTTGTGTT 58.803 43.478 30.00 0.00 44.66 3.32
6998 7537 3.740141 CGTGTTCAACTCTAGGGTTGTGT 60.740 47.826 30.00 0.00 44.66 3.72
7000 7539 2.433239 ACGTGTTCAACTCTAGGGTTGT 59.567 45.455 30.00 11.24 44.66 3.32
7001 7540 2.800544 CACGTGTTCAACTCTAGGGTTG 59.199 50.000 26.75 26.75 45.42 3.77
7002 7541 2.433239 ACACGTGTTCAACTCTAGGGTT 59.567 45.455 17.22 0.85 0.00 4.11
7006 7919 3.486108 GTCACACACGTGTTCAACTCTAG 59.514 47.826 20.79 6.91 42.83 2.43
7010 7923 0.996462 CGTCACACACGTGTTCAACT 59.004 50.000 20.79 0.00 44.07 3.16
7020 7933 0.320771 AAGGATCAGCCGTCACACAC 60.321 55.000 0.00 0.00 43.43 3.82
7021 7934 0.320683 CAAGGATCAGCCGTCACACA 60.321 55.000 0.00 0.00 43.43 3.72
7022 7935 0.037326 TCAAGGATCAGCCGTCACAC 60.037 55.000 0.00 0.00 43.43 3.82
7023 7936 0.684535 TTCAAGGATCAGCCGTCACA 59.315 50.000 0.00 0.00 43.43 3.58
7024 7937 1.808411 TTTCAAGGATCAGCCGTCAC 58.192 50.000 0.00 0.00 43.43 3.67
7025 7938 2.426522 CTTTTCAAGGATCAGCCGTCA 58.573 47.619 0.00 0.00 43.43 4.35
7070 7984 3.728267 TATCGCACGCGTCGGTCAG 62.728 63.158 23.71 9.06 40.74 3.51
7072 7986 2.565394 CTTATCGCACGCGTCGGTC 61.565 63.158 23.71 8.71 40.74 4.79
7073 7987 2.578713 CTTATCGCACGCGTCGGT 60.579 61.111 23.71 20.97 40.74 4.69
7074 7988 2.565394 GACTTATCGCACGCGTCGG 61.565 63.158 23.71 13.87 40.74 4.79
7076 7990 2.904016 CGACTTATCGCACGCGTC 59.096 61.111 9.86 3.36 42.43 5.19
7095 8012 7.430211 TCGAACTATACAATCGTGTGTGTTATC 59.570 37.037 4.34 0.00 38.82 1.75
7137 8062 1.731709 TCAATCGTTTGCCACTCATCG 59.268 47.619 1.18 0.00 32.61 3.84
7139 8064 4.218200 TCATTTCAATCGTTTGCCACTCAT 59.782 37.500 1.18 0.00 32.61 2.90
7142 8067 4.582701 TTCATTTCAATCGTTTGCCACT 57.417 36.364 1.18 0.00 32.61 4.00
7191 8116 5.295787 ACGTCAATGTTGTACATCTTGTTGT 59.704 36.000 0.00 2.44 37.97 3.32
7194 8119 5.053811 TCACGTCAATGTTGTACATCTTGT 58.946 37.500 0.00 0.00 37.97 3.16
7207 8132 3.541071 TCTTGCAACATCACGTCAATG 57.459 42.857 0.00 6.01 0.00 2.82
7211 8136 4.084066 TGTGTTATCTTGCAACATCACGTC 60.084 41.667 0.00 0.00 38.13 4.34
7214 8139 4.917415 GGTTGTGTTATCTTGCAACATCAC 59.083 41.667 0.00 0.00 41.89 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.