Multiple sequence alignment - TraesCS6D01G272600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G272600 chr6D 100.000 5960 0 0 1 5960 381350341 381356300 0.000000e+00 11007.0
1 TraesCS6D01G272600 chr6A 94.415 5121 194 43 1 5073 522613882 522618958 0.000000e+00 7788.0
2 TraesCS6D01G272600 chr6A 88.663 344 30 4 5154 5497 522618956 522619290 1.550000e-110 411.0
3 TraesCS6D01G272600 chr6A 94.845 97 5 0 5657 5753 522619293 522619389 1.030000e-32 152.0
4 TraesCS6D01G272600 chr6A 94.565 92 3 1 5819 5908 522621914 522622005 2.240000e-29 141.0
5 TraesCS6D01G272600 chr6A 96.429 56 2 0 5905 5960 522622023 522622078 6.360000e-15 93.5
6 TraesCS6D01G272600 chr6B 94.268 5007 192 39 1 4940 569039124 569034146 0.000000e+00 7568.0
7 TraesCS6D01G272600 chr6B 96.296 108 4 0 4938 5045 569034033 569033926 1.710000e-40 178.0
8 TraesCS6D01G272600 chr6B 95.506 89 4 0 5071 5159 416097939 416097851 6.230000e-30 143.0
9 TraesCS6D01G272600 chr2D 76.882 558 82 31 1970 2486 459811629 459811078 7.610000e-69 272.0
10 TraesCS6D01G272600 chr3B 90.291 206 17 3 3255 3459 52656853 52656650 3.540000e-67 267.0
11 TraesCS6D01G272600 chr3A 76.429 560 77 31 1988 2499 693447451 693446899 9.920000e-63 252.0
12 TraesCS6D01G272600 chr3A 94.382 89 4 1 5072 5160 648101944 648101857 1.040000e-27 135.0
13 TraesCS6D01G272600 chr2A 84.291 261 34 7 2232 2486 602770003 602769744 1.280000e-61 248.0
14 TraesCS6D01G272600 chr2A 93.258 89 6 0 5072 5160 387038906 387038994 1.350000e-26 132.0
15 TraesCS6D01G272600 chr7B 86.758 219 22 6 2291 2504 162144094 162143878 2.780000e-58 237.0
16 TraesCS6D01G272600 chr7B 77.091 275 40 15 1967 2230 162144369 162144107 2.900000e-28 137.0
17 TraesCS6D01G272600 chr2B 83.525 261 36 7 2232 2486 541016225 541015966 2.780000e-58 237.0
18 TraesCS6D01G272600 chr2B 98.851 87 1 0 5072 5158 545253109 545253023 8.000000e-34 156.0
19 TraesCS6D01G272600 chr5D 95.556 90 3 1 5068 5157 366675624 366675536 6.230000e-30 143.0
20 TraesCS6D01G272600 chr5D 96.512 86 3 0 5072 5157 381563917 381563832 6.230000e-30 143.0
21 TraesCS6D01G272600 chr5A 95.294 85 4 0 5072 5156 7109640 7109724 1.040000e-27 135.0
22 TraesCS6D01G272600 chr4A 94.318 88 5 0 5072 5159 744188210 744188297 1.040000e-27 135.0
23 TraesCS6D01G272600 chr4B 91.579 95 7 1 5066 5159 496549864 496549958 4.850000e-26 130.0
24 TraesCS6D01G272600 chr7D 80.226 177 16 10 2069 2230 197929877 197929705 1.360000e-21 115.0
25 TraesCS6D01G272600 chrUn 84.906 106 16 0 2831 2936 141495236 141495341 2.270000e-19 108.0
26 TraesCS6D01G272600 chrUn 84.906 106 16 0 2831 2936 141518850 141518955 2.270000e-19 108.0
27 TraesCS6D01G272600 chrUn 84.906 106 16 0 2831 2936 141558739 141558844 2.270000e-19 108.0
28 TraesCS6D01G272600 chrUn 84.906 106 16 0 2831 2936 141598655 141598760 2.270000e-19 108.0
29 TraesCS6D01G272600 chrUn 84.906 106 16 0 2831 2936 141622137 141622242 2.270000e-19 108.0
30 TraesCS6D01G272600 chr3D 86.047 86 6 4 2079 2161 557659749 557659667 2.960000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G272600 chr6D 381350341 381356300 5959 False 11007.0 11007 100.0000 1 5960 1 chr6D.!!$F1 5959
1 TraesCS6D01G272600 chr6A 522613882 522622078 8196 False 1717.1 7788 93.7834 1 5960 5 chr6A.!!$F1 5959
2 TraesCS6D01G272600 chr6B 569033926 569039124 5198 True 3873.0 7568 95.2820 1 5045 2 chr6B.!!$R2 5044
3 TraesCS6D01G272600 chr2D 459811078 459811629 551 True 272.0 272 76.8820 1970 2486 1 chr2D.!!$R1 516
4 TraesCS6D01G272600 chr3A 693446899 693447451 552 True 252.0 252 76.4290 1988 2499 1 chr3A.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 92 0.035439 TTTCATCGCCAAGGACTCCC 60.035 55.000 0.00 0.0 0.00 4.30 F
922 960 0.108520 AATCATGCCCTTTTGCGCAG 60.109 50.000 11.31 0.0 38.64 5.18 F
1954 2019 2.346244 GGCGTTCATCAAATTGCACATG 59.654 45.455 0.00 0.0 0.00 3.21 F
3253 3372 0.999406 CGTCTATGGGTGTTCTTGCG 59.001 55.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1669 0.539051 CCTTGATCGGGAGCAGAACT 59.461 55.000 0.00 0.0 0.00 3.01 R
2819 2938 1.071987 CCTCAACAGCTGCAGACCA 59.928 57.895 20.43 0.0 0.00 4.02 R
3784 3906 0.036732 AGAGCGCAAGGAATTGGTCA 59.963 50.000 11.47 0.0 38.28 4.02 R
5148 5407 0.119358 AGGCCTGGAAACTACTCCCT 59.881 55.000 3.11 0.0 34.22 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 4.400567 GCATGTTGGAAGCCTAAAGAAGAT 59.599 41.667 0.00 0.00 0.00 2.40
90 92 0.035439 TTTCATCGCCAAGGACTCCC 60.035 55.000 0.00 0.00 0.00 4.30
148 150 6.549433 ACATGATGTGGCAATAAAATTCCT 57.451 33.333 0.00 0.00 0.00 3.36
166 170 4.096190 TCCTATACCTGTCCTCCGTAAG 57.904 50.000 0.00 0.00 0.00 2.34
167 171 3.718434 TCCTATACCTGTCCTCCGTAAGA 59.282 47.826 0.00 0.00 43.02 2.10
284 288 7.068962 ACCAATAAATTCCAAAACTATACCCCG 59.931 37.037 0.00 0.00 0.00 5.73
318 325 1.097547 GGTAGCATCAACAGGCGCAT 61.098 55.000 10.83 0.00 33.30 4.73
344 354 4.388499 CCACCAACCTCCGGTCCG 62.388 72.222 3.60 3.60 33.12 4.79
375 385 0.461961 GCTATCGGAACCTCACTGCT 59.538 55.000 0.00 0.00 0.00 4.24
438 463 2.576832 CGGTAGACGGGTTGGTGGT 61.577 63.158 0.00 0.00 39.42 4.16
450 475 3.010920 GGGTTGGTGGTTAGGGTTTCTAT 59.989 47.826 0.00 0.00 0.00 1.98
493 518 1.774639 ACGCTTCGTGTGTATCGTTT 58.225 45.000 0.00 0.00 39.18 3.60
573 598 6.261158 GCTACAATTCAAGGTCTTCCTATTCC 59.739 42.308 0.00 0.00 44.35 3.01
579 604 5.039645 TCAAGGTCTTCCTATTCCTGGAAT 58.960 41.667 24.25 24.25 44.35 3.01
600 626 1.393539 ACGTCTTGCGATGCACATTAC 59.606 47.619 0.00 0.00 44.77 1.89
635 661 2.573915 TGGCCCATGTTACATCTACACA 59.426 45.455 0.00 0.00 0.00 3.72
646 672 2.427453 ACATCTACACATCCACGTCCTC 59.573 50.000 0.00 0.00 0.00 3.71
694 721 1.535028 TCAACATTGCAACGTAGGCTG 59.465 47.619 0.00 0.00 0.00 4.85
705 732 1.202770 ACGTAGGCTGGCTCTGTTTTT 60.203 47.619 7.13 0.00 0.00 1.94
719 749 4.389374 TCTGTTTTTCTCCTTGGCACTAG 58.611 43.478 0.00 0.00 0.00 2.57
757 787 4.462483 ACATGGTTTTGGTTTCATCGCTAT 59.538 37.500 0.00 0.00 0.00 2.97
804 837 6.756542 GCACATGTCACCAGCGATTATATATA 59.243 38.462 0.00 0.00 0.00 0.86
915 953 4.142093 CGAGAAATTCCAATCATGCCCTTT 60.142 41.667 0.00 0.00 0.00 3.11
918 956 2.766345 TTCCAATCATGCCCTTTTGC 57.234 45.000 0.00 0.00 0.00 3.68
922 960 0.108520 AATCATGCCCTTTTGCGCAG 60.109 50.000 11.31 0.00 38.64 5.18
1097 1135 4.250305 ATGCCGATACCACCGCCC 62.250 66.667 0.00 0.00 0.00 6.13
1607 1669 2.741092 GCTGGGACGAACTCCACA 59.259 61.111 0.00 0.00 41.63 4.17
1727 1789 9.775854 TTGCCTTATGATTCAATTTCAAGAAAA 57.224 25.926 0.00 0.00 33.56 2.29
1732 1794 5.550290 TGATTCAATTTCAAGAAAAGGGGC 58.450 37.500 0.00 0.00 33.56 5.80
1894 1956 5.395682 AAATGTTTGGGTGATGTGATGAG 57.604 39.130 0.00 0.00 0.00 2.90
1936 2001 3.982576 AAACAGGTTAGAAGTTTGGCG 57.017 42.857 0.00 0.00 34.47 5.69
1954 2019 2.346244 GGCGTTCATCAAATTGCACATG 59.654 45.455 0.00 0.00 0.00 3.21
2532 2650 9.981114 TTAAGGTGTAGTTAGTTTAGTTGTACC 57.019 33.333 0.00 0.00 0.00 3.34
2766 2885 7.996098 TCCATAAAAGGCTACTATTTATGCC 57.004 36.000 17.89 0.00 41.96 4.40
2852 2971 9.664332 CAGCTGTTGAGGCTAATATTATCTTAT 57.336 33.333 5.25 0.00 38.03 1.73
2856 2975 9.111519 TGTTGAGGCTAATATTATCTTATCCCA 57.888 33.333 0.00 0.00 0.00 4.37
2933 3052 4.517285 TCCTTGATGTTGATACTGGAAGC 58.483 43.478 0.00 0.00 37.60 3.86
3001 3120 7.875554 TGCCCAAGTAAGAAATTTAACAAATCC 59.124 33.333 0.00 0.00 0.00 3.01
3034 3153 7.791029 TGAGTATATCAGTTTGTGATTAGCCA 58.209 34.615 0.00 0.00 44.05 4.75
3042 3161 4.700213 AGTTTGTGATTAGCCACGCTATTT 59.300 37.500 0.00 0.00 41.01 1.40
3253 3372 0.999406 CGTCTATGGGTGTTCTTGCG 59.001 55.000 0.00 0.00 0.00 4.85
3291 3410 5.492895 TCTAATCGCTACAAATGGTGGAAA 58.507 37.500 0.00 0.00 0.00 3.13
3357 3476 2.489329 AGATGACCCTTTTGCACATTCG 59.511 45.455 0.00 0.00 0.00 3.34
3377 3496 7.495606 ACATTCGTGATACATTAGAGCAAATGA 59.504 33.333 11.89 0.00 38.84 2.57
3701 3823 9.168353 CTTTTTAAAAGTTTAATTGCATGCACC 57.832 29.630 22.58 4.27 33.12 5.01
3704 3826 1.545582 AGTTTAATTGCATGCACCGCT 59.454 42.857 22.58 9.98 0.00 5.52
3705 3827 1.655099 GTTTAATTGCATGCACCGCTG 59.345 47.619 22.58 0.00 0.00 5.18
3720 3842 5.106118 TGCACCGCTGTTATTAGCATTTTTA 60.106 36.000 0.00 0.00 43.87 1.52
3781 3903 3.791245 TGTTGCAACAATCCTTGAAACC 58.209 40.909 29.36 0.00 38.49 3.27
3782 3904 3.450457 TGTTGCAACAATCCTTGAAACCT 59.550 39.130 29.36 0.00 38.49 3.50
3783 3905 4.081198 TGTTGCAACAATCCTTGAAACCTT 60.081 37.500 29.36 0.00 38.49 3.50
3784 3906 4.751767 TGCAACAATCCTTGAAACCTTT 57.248 36.364 0.00 0.00 0.00 3.11
3785 3907 4.440880 TGCAACAATCCTTGAAACCTTTG 58.559 39.130 0.00 0.00 0.00 2.77
3786 3908 4.161189 TGCAACAATCCTTGAAACCTTTGA 59.839 37.500 0.00 0.00 0.00 2.69
3787 3909 4.507756 GCAACAATCCTTGAAACCTTTGAC 59.492 41.667 0.00 0.00 0.00 3.18
3788 3910 4.937201 ACAATCCTTGAAACCTTTGACC 57.063 40.909 0.00 0.00 0.00 4.02
3789 3911 4.285863 ACAATCCTTGAAACCTTTGACCA 58.714 39.130 0.00 0.00 0.00 4.02
3790 3912 4.714308 ACAATCCTTGAAACCTTTGACCAA 59.286 37.500 0.00 0.00 0.00 3.67
3791 3913 5.366477 ACAATCCTTGAAACCTTTGACCAAT 59.634 36.000 0.00 0.00 0.00 3.16
3792 3914 6.126796 ACAATCCTTGAAACCTTTGACCAATT 60.127 34.615 0.00 0.00 0.00 2.32
3802 3924 0.881118 TTGACCAATTCCTTGCGCTC 59.119 50.000 9.73 0.00 0.00 5.03
3804 3926 0.729690 GACCAATTCCTTGCGCTCTC 59.270 55.000 9.73 0.00 0.00 3.20
3806 3928 1.709147 CCAATTCCTTGCGCTCTCCG 61.709 60.000 9.73 0.00 40.75 4.63
3854 3976 6.920817 TGTCAGTAACTTATACCACACAGAG 58.079 40.000 0.00 0.00 0.00 3.35
3890 4012 2.475339 ATGGAGATCAGGAGCTCAGT 57.525 50.000 17.19 0.00 45.06 3.41
3896 4018 2.364970 AGATCAGGAGCTCAGTATGCAC 59.635 50.000 17.19 5.99 34.76 4.57
3944 4066 4.034510 GTGATTTTTGATAGTGGGAGCTCG 59.965 45.833 7.83 0.00 0.00 5.03
4022 4144 2.793278 ATTGTTCGTTTGGGTGAAGC 57.207 45.000 0.00 0.00 0.00 3.86
4023 4145 0.741915 TTGTTCGTTTGGGTGAAGCC 59.258 50.000 0.00 0.00 0.00 4.35
4037 4159 4.405358 GGGTGAAGCCATCCAATTTCATTA 59.595 41.667 0.00 0.00 43.23 1.90
4047 4169 9.435688 GCCATCCAATTTCATTAACTAACTTTT 57.564 29.630 0.00 0.00 0.00 2.27
4083 4207 6.669591 TCTCAGATTAAAGATGACTCTCCCAA 59.330 38.462 0.00 0.00 0.00 4.12
4190 4321 1.064979 GGGGGAAGTTCGATAGGCAAA 60.065 52.381 0.00 0.00 0.00 3.68
4195 4326 1.286248 AGTTCGATAGGCAAACCCCT 58.714 50.000 0.00 0.00 39.05 4.79
4202 4333 3.951680 CGATAGGCAAACCCCTGTAAAAT 59.048 43.478 0.00 0.00 36.41 1.82
4206 4337 5.477607 AGGCAAACCCCTGTAAAATAAAC 57.522 39.130 0.00 0.00 36.11 2.01
4207 4338 5.152193 AGGCAAACCCCTGTAAAATAAACT 58.848 37.500 0.00 0.00 36.11 2.66
4208 4339 6.316513 AGGCAAACCCCTGTAAAATAAACTA 58.683 36.000 0.00 0.00 36.11 2.24
4333 4465 6.293626 CCATTGTTCCCGATGATTACTTGATC 60.294 42.308 0.00 0.00 34.81 2.92
4350 4482 6.402222 ACTTGATCATCAGTGTAAGTCTTCC 58.598 40.000 0.00 0.00 0.00 3.46
4390 4522 7.581213 AATTCTGTTTGGTCTTGTAACATCA 57.419 32.000 0.00 0.00 31.96 3.07
4398 4530 4.455533 TGGTCTTGTAACATCAATCTGCAC 59.544 41.667 0.00 0.00 0.00 4.57
4407 4539 5.108187 ACATCAATCTGCACCTCTAACAT 57.892 39.130 0.00 0.00 0.00 2.71
4444 4576 7.988737 TGAGAACTCATGCTTATGTTTATTGG 58.011 34.615 0.00 0.00 34.14 3.16
4548 4688 7.560626 ACCATAATAGTCGGAGGTATAGATTCC 59.439 40.741 0.00 0.00 0.00 3.01
4550 4690 8.625651 CATAATAGTCGGAGGTATAGATTCCTG 58.374 40.741 0.00 0.00 33.83 3.86
4605 4745 6.458503 CAGTGACACGATTAATTACGTCAAG 58.541 40.000 13.24 8.03 40.76 3.02
4668 4808 1.440353 CGCGGCAAACTAGTTGTGC 60.440 57.895 23.36 23.36 39.63 4.57
4700 4840 2.769621 AGGCAGATCGGATGGGCA 60.770 61.111 13.08 0.00 0.00 5.36
4719 4859 2.608752 GCAAATTCAGAGTGCACCAAGG 60.609 50.000 14.63 0.75 38.19 3.61
4816 4958 3.220110 AGAATACCATTGGAGCTGCATG 58.780 45.455 9.39 9.51 0.00 4.06
4868 5010 4.720649 TTCATCTACAGTCACTAGCCAC 57.279 45.455 0.00 0.00 0.00 5.01
4929 5072 7.192913 CACCGCATTGTTTGTATATACACAAT 58.807 34.615 18.92 18.92 38.18 2.71
5020 5279 3.444742 CCTGAAATTATGCAAGCTGTGGA 59.555 43.478 0.00 0.00 0.00 4.02
5070 5329 2.352503 GTGCAACCAAAGGCTGTATG 57.647 50.000 0.00 0.00 0.00 2.39
5071 5330 1.613437 GTGCAACCAAAGGCTGTATGT 59.387 47.619 0.00 0.00 0.00 2.29
5072 5331 2.817258 GTGCAACCAAAGGCTGTATGTA 59.183 45.455 0.00 0.00 0.00 2.29
5073 5332 2.817258 TGCAACCAAAGGCTGTATGTAC 59.183 45.455 0.00 0.00 0.00 2.90
5074 5333 3.081804 GCAACCAAAGGCTGTATGTACT 58.918 45.455 0.00 0.00 0.00 2.73
5075 5334 3.127030 GCAACCAAAGGCTGTATGTACTC 59.873 47.826 0.00 0.00 0.00 2.59
5076 5335 3.629142 ACCAAAGGCTGTATGTACTCC 57.371 47.619 0.00 0.00 0.00 3.85
5077 5336 2.238898 ACCAAAGGCTGTATGTACTCCC 59.761 50.000 0.00 0.00 0.00 4.30
5078 5337 2.505819 CCAAAGGCTGTATGTACTCCCT 59.494 50.000 0.00 0.00 0.00 4.20
5079 5338 3.432326 CCAAAGGCTGTATGTACTCCCTC 60.432 52.174 0.00 0.00 30.73 4.30
5080 5339 2.089600 AGGCTGTATGTACTCCCTCC 57.910 55.000 0.00 0.00 0.00 4.30
5081 5340 0.674534 GGCTGTATGTACTCCCTCCG 59.325 60.000 0.00 0.00 0.00 4.63
5082 5341 1.400737 GCTGTATGTACTCCCTCCGT 58.599 55.000 0.00 0.00 0.00 4.69
5083 5342 1.337387 GCTGTATGTACTCCCTCCGTC 59.663 57.143 0.00 0.00 0.00 4.79
5084 5343 2.933573 CTGTATGTACTCCCTCCGTCT 58.066 52.381 0.00 0.00 0.00 4.18
5085 5344 2.879646 CTGTATGTACTCCCTCCGTCTC 59.120 54.545 0.00 0.00 0.00 3.36
5086 5345 2.240414 TGTATGTACTCCCTCCGTCTCA 59.760 50.000 0.00 0.00 0.00 3.27
5087 5346 2.526888 ATGTACTCCCTCCGTCTCAA 57.473 50.000 0.00 0.00 0.00 3.02
5088 5347 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
5089 5348 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
5090 5349 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
5091 5350 4.346730 TGTACTCCCTCCGTCTCAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
5092 5351 4.960469 TGTACTCCCTCCGTCTCAAAATAT 59.040 41.667 0.00 0.00 0.00 1.28
5093 5352 6.131264 TGTACTCCCTCCGTCTCAAAATATA 58.869 40.000 0.00 0.00 0.00 0.86
5094 5353 6.608405 TGTACTCCCTCCGTCTCAAAATATAA 59.392 38.462 0.00 0.00 0.00 0.98
5095 5354 6.163135 ACTCCCTCCGTCTCAAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
5096 5355 5.897824 ACTCCCTCCGTCTCAAAATATAAGA 59.102 40.000 0.00 0.00 0.00 2.10
5097 5356 6.383147 ACTCCCTCCGTCTCAAAATATAAGAA 59.617 38.462 0.00 0.00 0.00 2.52
5098 5357 6.579865 TCCCTCCGTCTCAAAATATAAGAAC 58.420 40.000 0.00 0.00 0.00 3.01
5099 5358 5.462398 CCCTCCGTCTCAAAATATAAGAACG 59.538 44.000 0.00 0.00 0.00 3.95
5100 5359 6.040878 CCTCCGTCTCAAAATATAAGAACGT 58.959 40.000 0.00 0.00 0.00 3.99
5101 5360 6.534079 CCTCCGTCTCAAAATATAAGAACGTT 59.466 38.462 0.00 0.00 0.00 3.99
5102 5361 7.064253 CCTCCGTCTCAAAATATAAGAACGTTT 59.936 37.037 0.46 0.00 0.00 3.60
5103 5362 8.314143 TCCGTCTCAAAATATAAGAACGTTTT 57.686 30.769 0.46 0.00 0.00 2.43
5104 5363 8.776470 TCCGTCTCAAAATATAAGAACGTTTTT 58.224 29.630 9.22 9.22 0.00 1.94
5150 5409 8.904099 AACGTTCTTATATTTTGGGATAGAGG 57.096 34.615 0.00 0.00 0.00 3.69
5151 5410 7.450903 ACGTTCTTATATTTTGGGATAGAGGG 58.549 38.462 0.00 0.00 0.00 4.30
5152 5411 7.291651 ACGTTCTTATATTTTGGGATAGAGGGA 59.708 37.037 0.00 0.00 0.00 4.20
5170 5429 2.468915 GGAGTAGTTTCCAGGCCTAGT 58.531 52.381 3.98 0.00 37.20 2.57
5171 5430 2.168728 GGAGTAGTTTCCAGGCCTAGTG 59.831 54.545 3.98 0.00 37.20 2.74
5184 5443 2.360844 GCCTAGTGAAAAGCTCCTTCC 58.639 52.381 6.15 0.00 0.00 3.46
5190 5449 0.238553 GAAAAGCTCCTTCCGTGCAC 59.761 55.000 6.82 6.82 33.25 4.57
5215 5474 3.555956 CGTCCACTGCTATGTTTATCCAC 59.444 47.826 0.00 0.00 0.00 4.02
5217 5476 3.449377 TCCACTGCTATGTTTATCCACGA 59.551 43.478 0.00 0.00 0.00 4.35
5218 5477 3.804325 CCACTGCTATGTTTATCCACGAG 59.196 47.826 0.00 0.00 0.00 4.18
5219 5478 3.246226 CACTGCTATGTTTATCCACGAGC 59.754 47.826 0.00 0.00 0.00 5.03
5220 5479 3.133003 ACTGCTATGTTTATCCACGAGCT 59.867 43.478 0.00 0.00 32.16 4.09
5221 5480 4.341235 ACTGCTATGTTTATCCACGAGCTA 59.659 41.667 0.00 0.00 32.16 3.32
5222 5481 5.163447 ACTGCTATGTTTATCCACGAGCTAA 60.163 40.000 0.00 0.00 32.16 3.09
5223 5482 5.853936 TGCTATGTTTATCCACGAGCTAAT 58.146 37.500 0.00 0.00 32.16 1.73
5224 5483 6.988522 TGCTATGTTTATCCACGAGCTAATA 58.011 36.000 0.00 0.00 32.16 0.98
5240 5499 6.255670 CGAGCTAATAAGTACATGAACTTGCA 59.744 38.462 0.00 0.00 39.95 4.08
5241 5500 7.308782 AGCTAATAAGTACATGAACTTGCAC 57.691 36.000 0.00 0.00 39.95 4.57
5251 5510 2.488952 TGAACTTGCACAGCGATAACA 58.511 42.857 0.00 0.00 0.00 2.41
5256 5515 3.372206 ACTTGCACAGCGATAACAGATTC 59.628 43.478 0.00 0.00 0.00 2.52
5305 5564 6.734104 AACTGATCACTTAAGTCTTGATGC 57.266 37.500 4.77 2.14 29.93 3.91
5313 5572 5.178623 CACTTAAGTCTTGATGCGGTAACAA 59.821 40.000 4.77 0.00 0.00 2.83
5327 5586 5.625721 TGCGGTAACAATTTGATACAAAACG 59.374 36.000 15.89 11.67 28.57 3.60
5350 5609 2.360949 ATCAGCTGCCAGATCGGACG 62.361 60.000 9.47 0.00 36.56 4.79
5370 5629 1.167851 CCATGTCATCAAAGTGGCGT 58.832 50.000 0.00 0.00 0.00 5.68
5372 5631 1.536766 CATGTCATCAAAGTGGCGTGT 59.463 47.619 0.00 0.00 36.29 4.49
5373 5632 0.943673 TGTCATCAAAGTGGCGTGTG 59.056 50.000 0.00 0.00 0.00 3.82
5439 5698 7.730084 TCACATATATTTCTGAGGAGTCCTTG 58.270 38.462 14.41 9.86 31.76 3.61
5440 5699 6.933521 CACATATATTTCTGAGGAGTCCTTGG 59.066 42.308 14.41 9.45 31.76 3.61
5476 5735 5.585820 TGAAAACTTGTAAAAGTGACCCC 57.414 39.130 0.00 0.00 32.47 4.95
5497 5756 3.677596 CCGTTTTGCCATGAAATAACACC 59.322 43.478 0.00 0.00 0.00 4.16
5499 5758 5.336055 CCGTTTTGCCATGAAATAACACCTA 60.336 40.000 0.00 0.00 0.00 3.08
5500 5759 5.799936 CGTTTTGCCATGAAATAACACCTAG 59.200 40.000 0.00 0.00 0.00 3.02
5501 5760 5.913137 TTTGCCATGAAATAACACCTAGG 57.087 39.130 7.41 7.41 0.00 3.02
5502 5761 4.584638 TGCCATGAAATAACACCTAGGT 57.415 40.909 9.21 9.21 0.00 3.08
5503 5762 4.929479 TGCCATGAAATAACACCTAGGTT 58.071 39.130 13.15 0.54 34.81 3.50
5504 5763 6.068461 TGCCATGAAATAACACCTAGGTTA 57.932 37.500 13.15 3.34 37.62 2.85
5505 5764 6.119536 TGCCATGAAATAACACCTAGGTTAG 58.880 40.000 13.15 4.45 36.74 2.34
5506 5765 5.008712 GCCATGAAATAACACCTAGGTTAGC 59.991 44.000 13.15 0.00 36.74 3.09
5507 5766 6.357367 CCATGAAATAACACCTAGGTTAGCT 58.643 40.000 13.15 0.00 36.74 3.32
5508 5767 7.506114 CCATGAAATAACACCTAGGTTAGCTA 58.494 38.462 13.15 1.52 36.74 3.32
5509 5768 7.990886 CCATGAAATAACACCTAGGTTAGCTAA 59.009 37.037 13.15 0.86 36.74 3.09
5510 5769 8.827677 CATGAAATAACACCTAGGTTAGCTAAC 58.172 37.037 25.52 25.52 36.74 2.34
5511 5770 8.142485 TGAAATAACACCTAGGTTAGCTAACT 57.858 34.615 30.36 20.33 36.74 2.24
5512 5771 8.599792 TGAAATAACACCTAGGTTAGCTAACTT 58.400 33.333 30.36 26.69 36.74 2.66
5513 5772 9.445878 GAAATAACACCTAGGTTAGCTAACTTT 57.554 33.333 30.36 22.17 36.74 2.66
5514 5773 9.445878 AAATAACACCTAGGTTAGCTAACTTTC 57.554 33.333 30.36 17.34 36.74 2.62
5515 5774 5.417754 ACACCTAGGTTAGCTAACTTTCC 57.582 43.478 30.36 17.47 36.47 3.13
5516 5775 4.224594 ACACCTAGGTTAGCTAACTTTCCC 59.775 45.833 30.36 17.14 36.47 3.97
5517 5776 3.779183 ACCTAGGTTAGCTAACTTTCCCC 59.221 47.826 30.36 16.48 36.47 4.81
5518 5777 3.778629 CCTAGGTTAGCTAACTTTCCCCA 59.221 47.826 30.36 11.33 36.47 4.96
5519 5778 4.226620 CCTAGGTTAGCTAACTTTCCCCAA 59.773 45.833 30.36 10.69 36.47 4.12
5520 5779 4.734843 AGGTTAGCTAACTTTCCCCAAA 57.265 40.909 30.36 0.00 36.47 3.28
5521 5780 4.404640 AGGTTAGCTAACTTTCCCCAAAC 58.595 43.478 30.36 13.55 36.47 2.93
5522 5781 3.508793 GGTTAGCTAACTTTCCCCAAACC 59.491 47.826 30.36 12.79 36.47 3.27
5523 5782 2.304221 AGCTAACTTTCCCCAAACCC 57.696 50.000 0.00 0.00 0.00 4.11
5524 5783 1.203137 AGCTAACTTTCCCCAAACCCC 60.203 52.381 0.00 0.00 0.00 4.95
5525 5784 1.203137 GCTAACTTTCCCCAAACCCCT 60.203 52.381 0.00 0.00 0.00 4.79
5526 5785 2.758640 GCTAACTTTCCCCAAACCCCTT 60.759 50.000 0.00 0.00 0.00 3.95
5527 5786 2.097110 AACTTTCCCCAAACCCCTTC 57.903 50.000 0.00 0.00 0.00 3.46
5528 5787 0.178973 ACTTTCCCCAAACCCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
5529 5788 0.178973 CTTTCCCCAAACCCCTTCGT 60.179 55.000 0.00 0.00 0.00 3.85
5530 5789 0.468400 TTTCCCCAAACCCCTTCGTG 60.468 55.000 0.00 0.00 0.00 4.35
5531 5790 1.647334 TTCCCCAAACCCCTTCGTGT 61.647 55.000 0.00 0.00 0.00 4.49
5532 5791 1.901464 CCCCAAACCCCTTCGTGTG 60.901 63.158 0.00 0.00 0.00 3.82
5533 5792 1.152839 CCCAAACCCCTTCGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
5534 5793 0.753848 CCCAAACCCCTTCGTGTGTT 60.754 55.000 0.00 0.00 0.00 3.32
5535 5794 0.383949 CCAAACCCCTTCGTGTGTTG 59.616 55.000 0.00 0.00 0.00 3.33
5536 5795 0.383949 CAAACCCCTTCGTGTGTTGG 59.616 55.000 0.00 0.00 0.00 3.77
5537 5796 0.033894 AAACCCCTTCGTGTGTTGGT 60.034 50.000 0.00 0.00 0.00 3.67
5538 5797 0.464916 AACCCCTTCGTGTGTTGGTC 60.465 55.000 0.00 0.00 0.00 4.02
5539 5798 1.342672 ACCCCTTCGTGTGTTGGTCT 61.343 55.000 0.00 0.00 0.00 3.85
5540 5799 0.884704 CCCCTTCGTGTGTTGGTCTG 60.885 60.000 0.00 0.00 0.00 3.51
5541 5800 0.179056 CCCTTCGTGTGTTGGTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
5542 5801 1.663695 CCTTCGTGTGTTGGTCTGTT 58.336 50.000 0.00 0.00 0.00 3.16
5543 5802 1.330521 CCTTCGTGTGTTGGTCTGTTG 59.669 52.381 0.00 0.00 0.00 3.33
5544 5803 1.330521 CTTCGTGTGTTGGTCTGTTGG 59.669 52.381 0.00 0.00 0.00 3.77
5545 5804 0.462937 TCGTGTGTTGGTCTGTTGGG 60.463 55.000 0.00 0.00 0.00 4.12
5546 5805 1.444119 CGTGTGTTGGTCTGTTGGGG 61.444 60.000 0.00 0.00 0.00 4.96
5547 5806 0.395173 GTGTGTTGGTCTGTTGGGGT 60.395 55.000 0.00 0.00 0.00 4.95
5548 5807 0.333312 TGTGTTGGTCTGTTGGGGTT 59.667 50.000 0.00 0.00 0.00 4.11
5549 5808 1.029681 GTGTTGGTCTGTTGGGGTTC 58.970 55.000 0.00 0.00 0.00 3.62
5550 5809 0.464735 TGTTGGTCTGTTGGGGTTCG 60.465 55.000 0.00 0.00 0.00 3.95
5551 5810 1.527380 TTGGTCTGTTGGGGTTCGC 60.527 57.895 0.00 0.00 0.00 4.70
5552 5811 2.671963 GGTCTGTTGGGGTTCGCC 60.672 66.667 0.00 0.00 0.00 5.54
5553 5812 2.430367 GTCTGTTGGGGTTCGCCT 59.570 61.111 7.39 0.00 37.45 5.52
5554 5813 1.966451 GTCTGTTGGGGTTCGCCTG 60.966 63.158 7.39 0.00 37.45 4.85
5555 5814 2.113139 CTGTTGGGGTTCGCCTGT 59.887 61.111 7.39 0.00 37.45 4.00
5556 5815 1.528309 CTGTTGGGGTTCGCCTGTT 60.528 57.895 7.39 0.00 37.45 3.16
5557 5816 1.515521 CTGTTGGGGTTCGCCTGTTC 61.516 60.000 7.39 0.00 37.45 3.18
5558 5817 1.527380 GTTGGGGTTCGCCTGTTCA 60.527 57.895 7.39 0.00 37.45 3.18
5559 5818 0.893727 GTTGGGGTTCGCCTGTTCAT 60.894 55.000 7.39 0.00 37.45 2.57
5560 5819 0.608035 TTGGGGTTCGCCTGTTCATC 60.608 55.000 7.39 0.00 37.45 2.92
5561 5820 2.106683 GGGGTTCGCCTGTTCATCG 61.107 63.158 0.00 0.00 37.45 3.84
5562 5821 2.106683 GGGTTCGCCTGTTCATCGG 61.107 63.158 0.00 0.00 37.45 4.18
5563 5822 2.750888 GGTTCGCCTGTTCATCGGC 61.751 63.158 0.00 0.00 42.86 5.54
5567 5826 3.324035 GCCTGTTCATCGGCGATC 58.676 61.111 21.25 9.86 36.45 3.69
5568 5827 2.589492 GCCTGTTCATCGGCGATCG 61.589 63.158 21.25 11.69 36.45 3.69
5569 5828 1.951130 CCTGTTCATCGGCGATCGG 60.951 63.158 21.25 13.78 39.77 4.18
5570 5829 2.584970 TGTTCATCGGCGATCGGC 60.585 61.111 29.95 29.95 39.77 5.54
5571 5830 2.584970 GTTCATCGGCGATCGGCA 60.585 61.111 36.24 24.87 46.16 5.69
5572 5831 2.279451 TTCATCGGCGATCGGCAG 60.279 61.111 36.24 28.17 46.16 4.85
5573 5832 4.950062 TCATCGGCGATCGGCAGC 62.950 66.667 36.24 11.94 46.16 5.25
5587 5846 3.434319 CAGCGGCGCATTGGAGTT 61.434 61.111 35.02 7.53 0.00 3.01
5588 5847 3.127533 AGCGGCGCATTGGAGTTC 61.128 61.111 35.02 0.00 0.00 3.01
5589 5848 4.179579 GCGGCGCATTGGAGTTCC 62.180 66.667 29.21 0.00 0.00 3.62
5590 5849 3.508840 CGGCGCATTGGAGTTCCC 61.509 66.667 10.83 0.00 34.29 3.97
5591 5850 3.140814 GGCGCATTGGAGTTCCCC 61.141 66.667 10.83 0.00 34.29 4.81
5592 5851 3.508840 GCGCATTGGAGTTCCCCG 61.509 66.667 0.30 0.00 34.29 5.73
5593 5852 2.824041 CGCATTGGAGTTCCCCGG 60.824 66.667 0.00 0.00 34.29 5.73
5594 5853 3.140814 GCATTGGAGTTCCCCGGC 61.141 66.667 0.00 0.00 34.29 6.13
5595 5854 2.824041 CATTGGAGTTCCCCGGCG 60.824 66.667 0.00 0.00 34.29 6.46
5596 5855 4.109675 ATTGGAGTTCCCCGGCGG 62.110 66.667 21.46 21.46 34.29 6.13
5614 5873 4.812476 CGTTCGAGGCGGCATGGA 62.812 66.667 13.08 0.00 0.00 3.41
5615 5874 2.892425 GTTCGAGGCGGCATGGAG 60.892 66.667 13.08 0.00 0.00 3.86
5616 5875 4.838152 TTCGAGGCGGCATGGAGC 62.838 66.667 13.08 0.00 44.65 4.70
5637 5896 3.811702 TCCTCAAGGAGCCTGGTG 58.188 61.111 0.00 0.00 39.78 4.17
5638 5897 2.045536 CCTCAAGGAGCCTGGTGC 60.046 66.667 0.00 0.00 41.71 5.01
5639 5898 2.045536 CTCAAGGAGCCTGGTGCC 60.046 66.667 0.00 0.00 42.71 5.01
5640 5899 2.530151 TCAAGGAGCCTGGTGCCT 60.530 61.111 3.98 3.98 42.71 4.75
5641 5900 1.229496 TCAAGGAGCCTGGTGCCTA 60.229 57.895 9.42 0.00 42.71 3.93
5642 5901 1.078143 CAAGGAGCCTGGTGCCTAC 60.078 63.158 9.42 0.00 42.71 3.18
5643 5902 1.229658 AAGGAGCCTGGTGCCTACT 60.230 57.895 9.42 0.00 42.71 2.57
5644 5903 1.268283 AAGGAGCCTGGTGCCTACTC 61.268 60.000 9.42 0.00 42.71 2.59
5645 5904 1.687493 GGAGCCTGGTGCCTACTCT 60.687 63.158 0.00 0.00 42.71 3.24
5646 5905 1.681486 GGAGCCTGGTGCCTACTCTC 61.681 65.000 0.00 0.00 42.71 3.20
5647 5906 1.681486 GAGCCTGGTGCCTACTCTCC 61.681 65.000 0.00 0.00 42.71 3.71
5648 5907 3.082579 GCCTGGTGCCTACTCTCCG 62.083 68.421 0.00 0.00 0.00 4.63
5649 5908 2.427245 CCTGGTGCCTACTCTCCGG 61.427 68.421 0.00 0.00 0.00 5.14
5650 5909 1.379977 CTGGTGCCTACTCTCCGGA 60.380 63.158 2.93 2.93 0.00 5.14
5651 5910 1.379977 TGGTGCCTACTCTCCGGAG 60.380 63.158 26.32 26.32 44.62 4.63
5669 5928 7.234782 TCTCCGGAGTATGGTATGTATTCAATT 59.765 37.037 30.17 0.00 0.00 2.32
5700 5959 0.035881 TCAAGAGCTTGGTGCCTCAG 59.964 55.000 10.09 0.00 44.23 3.35
5721 5980 4.741185 CAGTTTTGTTAGGTTTTTACCCGC 59.259 41.667 0.00 0.00 0.00 6.13
5731 5990 5.197451 AGGTTTTTACCCGCATATGATCAA 58.803 37.500 6.97 0.00 0.00 2.57
5765 6748 4.562143 CCATGATCCTTGTGCATAGATCGA 60.562 45.833 0.00 0.00 38.36 3.59
5802 6785 2.695359 TGATCTGTTTGTACCCGAAGC 58.305 47.619 0.00 0.00 0.00 3.86
5803 6786 2.301870 TGATCTGTTTGTACCCGAAGCT 59.698 45.455 0.00 0.00 0.00 3.74
5804 6787 2.163818 TCTGTTTGTACCCGAAGCTG 57.836 50.000 0.00 0.00 0.00 4.24
5808 6791 2.007608 GTTTGTACCCGAAGCTGATCC 58.992 52.381 0.00 0.00 0.00 3.36
5809 6792 1.568504 TTGTACCCGAAGCTGATCCT 58.431 50.000 0.00 0.00 0.00 3.24
5812 6795 1.067821 GTACCCGAAGCTGATCCTCTG 59.932 57.143 0.00 0.00 0.00 3.35
5813 6796 0.324738 ACCCGAAGCTGATCCTCTGA 60.325 55.000 0.00 0.00 0.00 3.27
5815 6798 1.397672 CCGAAGCTGATCCTCTGAGA 58.602 55.000 6.17 0.00 0.00 3.27
5816 6799 1.962807 CCGAAGCTGATCCTCTGAGAT 59.037 52.381 6.17 0.00 0.00 2.75
5872 8590 7.552687 TGGATTAGTTTTCAGCGATATGAAAGT 59.447 33.333 9.74 5.99 46.70 2.66
5884 8602 2.206576 ATGAAAGTGGTGAGAAGGGC 57.793 50.000 0.00 0.00 0.00 5.19
5891 8609 1.299976 GGTGAGAAGGGCGTTGGAT 59.700 57.895 0.00 0.00 0.00 3.41
5897 8615 0.947244 GAAGGGCGTTGGATGCATAG 59.053 55.000 0.00 0.00 0.00 2.23
5898 8616 0.255890 AAGGGCGTTGGATGCATAGT 59.744 50.000 0.00 0.00 0.00 2.12
5901 8619 0.657840 GGCGTTGGATGCATAGTGTC 59.342 55.000 0.00 0.00 0.00 3.67
5902 8620 1.368641 GCGTTGGATGCATAGTGTCA 58.631 50.000 0.00 0.00 0.00 3.58
5903 8621 1.737236 GCGTTGGATGCATAGTGTCAA 59.263 47.619 0.00 0.00 0.00 3.18
5937 8678 1.202580 AGGCGACTAGGATGAATGCAC 60.203 52.381 0.00 0.00 40.61 4.57
5944 8685 5.446473 CGACTAGGATGAATGCACTTTGTTC 60.446 44.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 79 0.533755 GATGATGGGAGTCCTTGGCG 60.534 60.000 9.58 0.00 0.00 5.69
90 92 1.202568 TGCTTAGTCGCCCTGATGATG 60.203 52.381 0.00 0.00 0.00 3.07
148 150 4.280174 GCAATCTTACGGAGGACAGGTATA 59.720 45.833 0.00 0.00 0.00 1.47
258 262 7.068962 CGGGGTATAGTTTTGGAATTTATTGGT 59.931 37.037 0.00 0.00 0.00 3.67
269 273 3.437741 GTGTTGACGGGGTATAGTTTTGG 59.562 47.826 0.00 0.00 0.00 3.28
278 282 1.855213 CGACGAGTGTTGACGGGGTA 61.855 60.000 0.00 0.00 0.00 3.69
284 288 1.063951 CTACCGCGACGAGTGTTGAC 61.064 60.000 8.23 0.00 0.00 3.18
318 325 4.912395 GGTTGGTGGGCTGTGGCA 62.912 66.667 0.00 0.00 40.87 4.92
358 368 0.738975 CGAGCAGTGAGGTTCCGATA 59.261 55.000 0.00 0.00 0.00 2.92
438 463 2.762327 ACGAGGCGAATAGAAACCCTAA 59.238 45.455 0.00 0.00 0.00 2.69
450 475 2.341101 GGAGGTCTCACGAGGCGAA 61.341 63.158 0.00 0.00 32.85 4.70
511 536 8.296713 TGACCTCTTCTTTGTGCATTTTAATAC 58.703 33.333 0.00 0.00 0.00 1.89
600 626 1.586154 GGGCCATGTTCGAGTGTTGG 61.586 60.000 4.39 2.43 0.00 3.77
694 721 1.270826 GCCAAGGAGAAAAACAGAGCC 59.729 52.381 0.00 0.00 0.00 4.70
705 732 0.545309 ACTGCCTAGTGCCAAGGAGA 60.545 55.000 0.50 0.00 40.16 3.71
757 787 6.019640 GTGCGTTATATAAGTTGCCGAAAGTA 60.020 38.462 6.61 0.00 0.00 2.24
804 837 4.219288 GGGAGTGAACATTGCTTCTGAATT 59.781 41.667 0.00 0.00 0.00 2.17
880 916 4.821805 TGGAATTTCTCGGCAGATAATTCC 59.178 41.667 27.74 27.74 44.57 3.01
915 953 1.599071 CTGACTTGACTTTCTGCGCAA 59.401 47.619 13.05 0.00 0.00 4.85
922 960 1.149148 GGTCCGCTGACTTGACTTTC 58.851 55.000 8.25 0.00 41.47 2.62
1607 1669 0.539051 CCTTGATCGGGAGCAGAACT 59.461 55.000 0.00 0.00 0.00 3.01
1870 1932 6.041865 TCTCATCACATCACCCAAACATTTTT 59.958 34.615 0.00 0.00 0.00 1.94
1936 2001 5.224888 ACAGACATGTGCAATTTGATGAAC 58.775 37.500 1.15 0.00 38.57 3.18
2050 2119 8.215132 GCCTAAAATAATTTCGTCTGTCTATCG 58.785 37.037 0.00 0.00 0.00 2.92
2061 2130 8.969121 TCATGCATATGCCTAAAATAATTTCG 57.031 30.769 24.54 0.00 41.18 3.46
2207 2297 5.934625 GTGGCTATGGATGTACCTTCATAAG 59.065 44.000 1.37 0.00 39.86 1.73
2392 2508 9.482627 GACCATTGGATATTCTCTTTACTACAG 57.517 37.037 10.37 0.00 0.00 2.74
2532 2650 2.961526 ACTCATTACAGCCTACACCG 57.038 50.000 0.00 0.00 0.00 4.94
2716 2834 7.825331 AGAGAACAGTCCATCGAATATAGAA 57.175 36.000 0.00 0.00 0.00 2.10
2766 2885 5.277683 GCATGGCTTACTATCAGACACATTG 60.278 44.000 0.00 0.00 29.73 2.82
2819 2938 1.071987 CCTCAACAGCTGCAGACCA 59.928 57.895 20.43 0.00 0.00 4.02
2852 2971 2.530460 AATACTGCCTGCAATTGGGA 57.470 45.000 7.72 0.00 0.00 4.37
2856 2975 5.195940 AGATGTGTAATACTGCCTGCAATT 58.804 37.500 0.00 0.00 0.00 2.32
2933 3052 6.250819 GTCACACTGAATCCATGTTAAATCG 58.749 40.000 0.00 0.00 0.00 3.34
3001 3120 7.277760 TCACAAACTGATATACTCAAACATCCG 59.722 37.037 0.00 0.00 32.14 4.18
3034 3153 9.783256 GTTGAATAAACTTGGATAAAATAGCGT 57.217 29.630 0.00 0.00 35.75 5.07
3291 3410 6.434340 CCCAAATACAAAGTCTAGCTTTTCCT 59.566 38.462 8.78 0.62 44.41 3.36
3701 3823 7.222611 AGCCAAATAAAAATGCTAATAACAGCG 59.777 33.333 0.00 0.00 44.88 5.18
3704 3826 8.757877 AGGAGCCAAATAAAAATGCTAATAACA 58.242 29.630 0.00 0.00 31.23 2.41
3720 3842 4.406456 TGTGTGTGATTTAGGAGCCAAAT 58.594 39.130 0.00 0.00 0.00 2.32
3780 3902 1.669795 GCGCAAGGAATTGGTCAAAGG 60.670 52.381 0.30 0.00 38.28 3.11
3781 3903 1.270550 AGCGCAAGGAATTGGTCAAAG 59.729 47.619 11.47 0.00 38.28 2.77
3782 3904 1.269448 GAGCGCAAGGAATTGGTCAAA 59.731 47.619 11.47 0.00 38.28 2.69
3783 3905 0.881118 GAGCGCAAGGAATTGGTCAA 59.119 50.000 11.47 0.00 38.28 3.18
3784 3906 0.036732 AGAGCGCAAGGAATTGGTCA 59.963 50.000 11.47 0.00 38.28 4.02
3785 3907 0.729690 GAGAGCGCAAGGAATTGGTC 59.270 55.000 11.47 0.00 38.28 4.02
3786 3908 0.678048 GGAGAGCGCAAGGAATTGGT 60.678 55.000 11.47 0.00 38.28 3.67
3787 3909 1.709147 CGGAGAGCGCAAGGAATTGG 61.709 60.000 11.47 0.00 38.28 3.16
3788 3910 1.021390 ACGGAGAGCGCAAGGAATTG 61.021 55.000 11.47 0.00 38.28 2.32
3789 3911 0.321653 AACGGAGAGCGCAAGGAATT 60.322 50.000 11.47 0.00 38.28 2.17
3790 3912 1.021390 CAACGGAGAGCGCAAGGAAT 61.021 55.000 11.47 0.00 38.28 3.01
3791 3913 1.667830 CAACGGAGAGCGCAAGGAA 60.668 57.895 11.47 0.00 38.28 3.36
3792 3914 1.888436 ATCAACGGAGAGCGCAAGGA 61.888 55.000 11.47 0.00 38.28 3.36
3802 3924 5.527951 TGAAAACCAAAATCATCAACGGAG 58.472 37.500 0.00 0.00 0.00 4.63
3804 3926 6.783892 ATTGAAAACCAAAATCATCAACGG 57.216 33.333 0.00 0.00 38.43 4.44
3836 3958 3.453353 GGGCCTCTGTGTGGTATAAGTTA 59.547 47.826 0.84 0.00 0.00 2.24
3854 3976 5.445964 TCTCCATAATTTACTTTCTGGGCC 58.554 41.667 0.00 0.00 0.00 5.80
3896 4018 2.040544 AGAATTTCCTGCGTGCCCG 61.041 57.895 0.00 0.00 37.07 6.13
3935 4057 3.520691 AGGTATGTATACGAGCTCCCA 57.479 47.619 8.47 0.00 34.11 4.37
3944 4066 6.722129 ACATCTCCTCTGGAAGGTATGTATAC 59.278 42.308 10.84 0.00 44.19 1.47
4006 4128 0.958822 ATGGCTTCACCCAAACGAAC 59.041 50.000 0.00 0.00 38.61 3.95
4069 4193 4.043310 TGGACAAAATTGGGAGAGTCATCT 59.957 41.667 0.00 0.00 38.98 2.90
4083 4207 6.703607 CGTATCTGAGCTATCTTGGACAAAAT 59.296 38.462 0.00 0.00 0.00 1.82
4183 4314 6.316513 AGTTTATTTTACAGGGGTTTGCCTA 58.683 36.000 0.00 0.00 34.45 3.93
4190 4321 8.666821 AGAGAAGTTAGTTTATTTTACAGGGGT 58.333 33.333 0.00 0.00 0.00 4.95
4207 4338 9.587772 CCGAGATGATTAGAAAAAGAGAAGTTA 57.412 33.333 0.00 0.00 0.00 2.24
4208 4339 7.550906 CCCGAGATGATTAGAAAAAGAGAAGTT 59.449 37.037 0.00 0.00 0.00 2.66
4229 4361 2.237392 AGAAGGACCTGAAAATCCCGAG 59.763 50.000 0.00 0.00 35.38 4.63
4333 4465 8.498054 AAATACATGGAAGACTTACACTGATG 57.502 34.615 1.07 0.00 0.00 3.07
4375 4507 4.455533 GTGCAGATTGATGTTACAAGACCA 59.544 41.667 0.00 0.00 33.22 4.02
4390 4522 4.833478 ACTCATGTTAGAGGTGCAGATT 57.167 40.909 0.00 0.00 39.97 2.40
4444 4576 3.119101 TCCTGGAATAAGTCGAGCAAGAC 60.119 47.826 0.00 3.71 41.23 3.01
4530 4670 4.105057 AGACAGGAATCTATACCTCCGACT 59.895 45.833 0.00 0.00 33.91 4.18
4566 4706 2.807967 GTCACTGCACAGCAAGATTACA 59.192 45.455 0.00 0.00 38.41 2.41
4605 4745 4.501071 ACCAAGAAATGATCATTGCAAGC 58.499 39.130 25.32 11.70 0.00 4.01
4668 4808 0.745486 TGCCTCCGCTCATTGTCATG 60.745 55.000 0.00 0.00 35.36 3.07
4700 4840 1.615392 GCCTTGGTGCACTCTGAATTT 59.385 47.619 17.98 0.00 0.00 1.82
4719 4859 1.251251 AAGCCCTTCTGTGATTGTGC 58.749 50.000 0.00 0.00 0.00 4.57
4771 4912 4.841443 ATGTGCCACTTACATATGCATG 57.159 40.909 10.16 0.00 37.02 4.06
4774 4915 5.541845 TCTCTATGTGCCACTTACATATGC 58.458 41.667 1.58 0.00 39.51 3.14
4868 5010 2.149803 TACAACAGACAGCGGGACCG 62.150 60.000 6.35 6.35 43.09 4.79
5020 5279 8.958060 TTAGTTATCAGGTCATATAGGAAGCT 57.042 34.615 0.00 0.00 0.00 3.74
5029 5288 7.831690 TGCACCAAAATTAGTTATCAGGTCATA 59.168 33.333 0.00 0.00 0.00 2.15
5051 5310 1.613437 ACATACAGCCTTTGGTTGCAC 59.387 47.619 0.38 0.00 37.43 4.57
5070 5329 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
5071 5330 7.064866 TCTTATATTTTGAGACGGAGGGAGTA 58.935 38.462 0.00 0.00 0.00 2.59
5072 5331 5.897824 TCTTATATTTTGAGACGGAGGGAGT 59.102 40.000 0.00 0.00 0.00 3.85
5073 5332 6.406692 TCTTATATTTTGAGACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
5074 5333 6.579865 GTTCTTATATTTTGAGACGGAGGGA 58.420 40.000 0.00 0.00 0.00 4.20
5075 5334 5.462398 CGTTCTTATATTTTGAGACGGAGGG 59.538 44.000 0.00 0.00 0.00 4.30
5076 5335 6.040878 ACGTTCTTATATTTTGAGACGGAGG 58.959 40.000 0.00 0.00 0.00 4.30
5077 5336 7.521509 AACGTTCTTATATTTTGAGACGGAG 57.478 36.000 0.00 0.00 0.00 4.63
5078 5337 7.894376 AAACGTTCTTATATTTTGAGACGGA 57.106 32.000 0.00 0.00 0.00 4.69
5079 5338 8.944212 AAAAACGTTCTTATATTTTGAGACGG 57.056 30.769 0.00 0.00 0.00 4.79
5124 5383 9.338622 CCTCTATCCCAAAATATAAGAACGTTT 57.661 33.333 0.46 0.00 0.00 3.60
5125 5384 7.937394 CCCTCTATCCCAAAATATAAGAACGTT 59.063 37.037 0.00 0.00 0.00 3.99
5126 5385 7.291651 TCCCTCTATCCCAAAATATAAGAACGT 59.708 37.037 0.00 0.00 0.00 3.99
5127 5386 7.676947 TCCCTCTATCCCAAAATATAAGAACG 58.323 38.462 0.00 0.00 0.00 3.95
5128 5387 8.661345 ACTCCCTCTATCCCAAAATATAAGAAC 58.339 37.037 0.00 0.00 0.00 3.01
5129 5388 8.814448 ACTCCCTCTATCCCAAAATATAAGAA 57.186 34.615 0.00 0.00 0.00 2.52
5130 5389 9.548631 CTACTCCCTCTATCCCAAAATATAAGA 57.451 37.037 0.00 0.00 0.00 2.10
5131 5390 9.327731 ACTACTCCCTCTATCCCAAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
5132 5391 9.684702 AACTACTCCCTCTATCCCAAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
5133 5392 9.684702 AAACTACTCCCTCTATCCCAAAATATA 57.315 33.333 0.00 0.00 0.00 0.86
5134 5393 8.582891 AAACTACTCCCTCTATCCCAAAATAT 57.417 34.615 0.00 0.00 0.00 1.28
5135 5394 7.072076 GGAAACTACTCCCTCTATCCCAAAATA 59.928 40.741 0.00 0.00 0.00 1.40
5136 5395 6.126449 GGAAACTACTCCCTCTATCCCAAAAT 60.126 42.308 0.00 0.00 0.00 1.82
5137 5396 5.191124 GGAAACTACTCCCTCTATCCCAAAA 59.809 44.000 0.00 0.00 0.00 2.44
5138 5397 4.720273 GGAAACTACTCCCTCTATCCCAAA 59.280 45.833 0.00 0.00 0.00 3.28
5139 5398 4.265124 TGGAAACTACTCCCTCTATCCCAA 60.265 45.833 0.00 0.00 34.22 4.12
5140 5399 3.273886 TGGAAACTACTCCCTCTATCCCA 59.726 47.826 0.00 0.00 34.22 4.37
5141 5400 3.898741 CTGGAAACTACTCCCTCTATCCC 59.101 52.174 0.00 0.00 34.22 3.85
5142 5401 3.898741 CCTGGAAACTACTCCCTCTATCC 59.101 52.174 0.00 0.00 34.22 2.59
5143 5402 3.322541 GCCTGGAAACTACTCCCTCTATC 59.677 52.174 0.00 0.00 34.22 2.08
5144 5403 3.310193 GCCTGGAAACTACTCCCTCTAT 58.690 50.000 0.00 0.00 34.22 1.98
5145 5404 2.626149 GGCCTGGAAACTACTCCCTCTA 60.626 54.545 0.00 0.00 34.22 2.43
5146 5405 1.574263 GCCTGGAAACTACTCCCTCT 58.426 55.000 0.00 0.00 34.22 3.69
5147 5406 0.542333 GGCCTGGAAACTACTCCCTC 59.458 60.000 0.00 0.00 34.22 4.30
5148 5407 0.119358 AGGCCTGGAAACTACTCCCT 59.881 55.000 3.11 0.00 34.22 4.20
5149 5408 1.763545 CTAGGCCTGGAAACTACTCCC 59.236 57.143 17.99 0.00 34.22 4.30
5150 5409 2.168728 CACTAGGCCTGGAAACTACTCC 59.831 54.545 24.81 0.00 35.88 3.85
5151 5410 3.097614 TCACTAGGCCTGGAAACTACTC 58.902 50.000 24.81 0.00 0.00 2.59
5152 5411 3.185880 TCACTAGGCCTGGAAACTACT 57.814 47.619 24.81 0.00 0.00 2.57
5170 5429 0.179032 TGCACGGAAGGAGCTTTTCA 60.179 50.000 12.29 0.00 37.20 2.69
5171 5430 0.238553 GTGCACGGAAGGAGCTTTTC 59.761 55.000 0.00 0.00 37.20 2.29
5190 5449 1.019278 AAACATAGCAGTGGACGCCG 61.019 55.000 0.00 0.00 0.00 6.46
5193 5452 3.555956 GTGGATAAACATAGCAGTGGACG 59.444 47.826 0.00 0.00 0.00 4.79
5196 5455 3.792401 TCGTGGATAAACATAGCAGTGG 58.208 45.455 0.00 0.00 0.00 4.00
5215 5474 6.255670 TGCAAGTTCATGTACTTATTAGCTCG 59.744 38.462 16.26 4.43 36.24 5.03
5217 5476 6.878923 TGTGCAAGTTCATGTACTTATTAGCT 59.121 34.615 16.26 0.00 36.24 3.32
5218 5477 7.072177 TGTGCAAGTTCATGTACTTATTAGC 57.928 36.000 16.26 15.23 36.24 3.09
5219 5478 7.182761 GCTGTGCAAGTTCATGTACTTATTAG 58.817 38.462 16.26 12.90 36.24 1.73
5220 5479 6.183360 CGCTGTGCAAGTTCATGTACTTATTA 60.183 38.462 16.26 4.70 36.24 0.98
5221 5480 5.390885 CGCTGTGCAAGTTCATGTACTTATT 60.391 40.000 16.26 0.00 36.24 1.40
5222 5481 4.093408 CGCTGTGCAAGTTCATGTACTTAT 59.907 41.667 16.26 0.00 36.24 1.73
5223 5482 3.431912 CGCTGTGCAAGTTCATGTACTTA 59.568 43.478 16.26 0.94 36.24 2.24
5224 5483 2.224079 CGCTGTGCAAGTTCATGTACTT 59.776 45.455 11.56 11.56 38.87 2.24
5240 5499 7.609760 TTTTGTATGAATCTGTTATCGCTGT 57.390 32.000 0.00 0.00 0.00 4.40
5241 5500 8.177663 AGTTTTTGTATGAATCTGTTATCGCTG 58.822 33.333 0.00 0.00 0.00 5.18
5276 5535 9.996554 TCAAGACTTAAGTGATCAGTTTTCATA 57.003 29.630 20.52 0.00 0.00 2.15
5283 5542 4.867047 CGCATCAAGACTTAAGTGATCAGT 59.133 41.667 14.14 0.00 29.49 3.41
5284 5543 4.269603 CCGCATCAAGACTTAAGTGATCAG 59.730 45.833 14.14 5.97 29.49 2.90
5285 5544 4.183865 CCGCATCAAGACTTAAGTGATCA 58.816 43.478 14.14 0.00 29.49 2.92
5287 5546 4.207891 ACCGCATCAAGACTTAAGTGAT 57.792 40.909 14.14 7.04 32.17 3.06
5297 5556 5.895636 ATCAAATTGTTACCGCATCAAGA 57.104 34.783 0.00 0.00 0.00 3.02
5305 5564 7.376336 TCAACGTTTTGTATCAAATTGTTACCG 59.624 33.333 0.00 9.25 34.02 4.02
5313 5572 6.803320 CAGCTGATCAACGTTTTGTATCAAAT 59.197 34.615 8.42 0.00 33.07 2.32
5327 5586 0.935898 CGATCTGGCAGCTGATCAAC 59.064 55.000 20.43 0.00 39.06 3.18
5370 5629 1.378531 AAAGAACGAGCACAAGCACA 58.621 45.000 0.00 0.00 45.49 4.57
5394 5653 4.528206 GTGATTCAATCAAGGGGGTTTTCT 59.472 41.667 0.29 0.00 41.69 2.52
5431 5690 1.410517 TCATCTCATCGCCAAGGACTC 59.589 52.381 0.00 0.00 0.00 3.36
5439 5698 5.240713 AGTTTTCATTTCATCTCATCGCC 57.759 39.130 0.00 0.00 0.00 5.54
5440 5699 6.088824 ACAAGTTTTCATTTCATCTCATCGC 58.911 36.000 0.00 0.00 0.00 4.58
5469 5728 1.175983 TCATGGCAAAACGGGGTCAC 61.176 55.000 0.00 0.00 0.00 3.67
5472 5731 1.347062 ATTTCATGGCAAAACGGGGT 58.653 45.000 0.00 0.00 0.00 4.95
5473 5732 3.258228 GTTATTTCATGGCAAAACGGGG 58.742 45.455 0.00 0.00 0.00 5.73
5476 5735 4.555262 AGGTGTTATTTCATGGCAAAACG 58.445 39.130 0.00 0.00 0.00 3.60
5497 5756 5.431179 TTGGGGAAAGTTAGCTAACCTAG 57.569 43.478 28.79 0.00 36.88 3.02
5499 5758 4.404640 GTTTGGGGAAAGTTAGCTAACCT 58.595 43.478 28.79 16.72 36.88 3.50
5500 5759 3.508793 GGTTTGGGGAAAGTTAGCTAACC 59.491 47.826 28.79 16.06 36.88 2.85
5501 5760 3.508793 GGGTTTGGGGAAAGTTAGCTAAC 59.491 47.826 26.04 26.04 36.46 2.34
5502 5761 3.500836 GGGGTTTGGGGAAAGTTAGCTAA 60.501 47.826 0.86 0.86 0.00 3.09
5503 5762 2.042026 GGGGTTTGGGGAAAGTTAGCTA 59.958 50.000 0.00 0.00 0.00 3.32
5504 5763 1.203137 GGGGTTTGGGGAAAGTTAGCT 60.203 52.381 0.00 0.00 0.00 3.32
5505 5764 1.203137 AGGGGTTTGGGGAAAGTTAGC 60.203 52.381 0.00 0.00 0.00 3.09
5506 5765 2.992847 AGGGGTTTGGGGAAAGTTAG 57.007 50.000 0.00 0.00 0.00 2.34
5507 5766 2.489437 CGAAGGGGTTTGGGGAAAGTTA 60.489 50.000 0.00 0.00 0.00 2.24
5508 5767 1.756333 CGAAGGGGTTTGGGGAAAGTT 60.756 52.381 0.00 0.00 0.00 2.66
5509 5768 0.178973 CGAAGGGGTTTGGGGAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
5510 5769 0.178973 ACGAAGGGGTTTGGGGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
5511 5770 0.468400 CACGAAGGGGTTTGGGGAAA 60.468 55.000 0.00 0.00 0.00 3.13
5512 5771 1.151908 CACGAAGGGGTTTGGGGAA 59.848 57.895 0.00 0.00 0.00 3.97
5513 5772 2.079911 ACACGAAGGGGTTTGGGGA 61.080 57.895 0.00 0.00 0.00 4.81
5514 5773 1.901464 CACACGAAGGGGTTTGGGG 60.901 63.158 0.00 0.00 0.00 4.96
5515 5774 0.753848 AACACACGAAGGGGTTTGGG 60.754 55.000 0.00 0.00 0.00 4.12
5516 5775 0.383949 CAACACACGAAGGGGTTTGG 59.616 55.000 0.00 0.00 0.00 3.28
5517 5776 0.383949 CCAACACACGAAGGGGTTTG 59.616 55.000 0.00 0.00 0.00 2.93
5518 5777 0.033894 ACCAACACACGAAGGGGTTT 60.034 50.000 0.00 0.00 0.00 3.27
5519 5778 0.464916 GACCAACACACGAAGGGGTT 60.465 55.000 0.00 0.00 0.00 4.11
5520 5779 1.147600 GACCAACACACGAAGGGGT 59.852 57.895 0.00 0.00 0.00 4.95
5521 5780 0.884704 CAGACCAACACACGAAGGGG 60.885 60.000 0.00 0.00 0.00 4.79
5522 5781 0.179056 ACAGACCAACACACGAAGGG 60.179 55.000 0.00 0.00 0.00 3.95
5523 5782 1.330521 CAACAGACCAACACACGAAGG 59.669 52.381 0.00 0.00 0.00 3.46
5524 5783 1.330521 CCAACAGACCAACACACGAAG 59.669 52.381 0.00 0.00 0.00 3.79
5525 5784 1.374560 CCAACAGACCAACACACGAA 58.625 50.000 0.00 0.00 0.00 3.85
5526 5785 0.462937 CCCAACAGACCAACACACGA 60.463 55.000 0.00 0.00 0.00 4.35
5527 5786 1.444119 CCCCAACAGACCAACACACG 61.444 60.000 0.00 0.00 0.00 4.49
5528 5787 0.395173 ACCCCAACAGACCAACACAC 60.395 55.000 0.00 0.00 0.00 3.82
5529 5788 0.333312 AACCCCAACAGACCAACACA 59.667 50.000 0.00 0.00 0.00 3.72
5530 5789 1.029681 GAACCCCAACAGACCAACAC 58.970 55.000 0.00 0.00 0.00 3.32
5531 5790 0.464735 CGAACCCCAACAGACCAACA 60.465 55.000 0.00 0.00 0.00 3.33
5532 5791 1.792118 GCGAACCCCAACAGACCAAC 61.792 60.000 0.00 0.00 0.00 3.77
5533 5792 1.527380 GCGAACCCCAACAGACCAA 60.527 57.895 0.00 0.00 0.00 3.67
5534 5793 2.112297 GCGAACCCCAACAGACCA 59.888 61.111 0.00 0.00 0.00 4.02
5535 5794 2.671963 GGCGAACCCCAACAGACC 60.672 66.667 0.00 0.00 0.00 3.85
5536 5795 1.966451 CAGGCGAACCCCAACAGAC 60.966 63.158 0.00 0.00 36.11 3.51
5537 5796 1.990160 AACAGGCGAACCCCAACAGA 61.990 55.000 0.00 0.00 36.11 3.41
5538 5797 1.515521 GAACAGGCGAACCCCAACAG 61.516 60.000 0.00 0.00 36.11 3.16
5539 5798 1.527380 GAACAGGCGAACCCCAACA 60.527 57.895 0.00 0.00 36.11 3.33
5540 5799 0.893727 ATGAACAGGCGAACCCCAAC 60.894 55.000 0.00 0.00 36.11 3.77
5541 5800 0.608035 GATGAACAGGCGAACCCCAA 60.608 55.000 0.00 0.00 36.11 4.12
5542 5801 1.002624 GATGAACAGGCGAACCCCA 60.003 57.895 0.00 0.00 36.11 4.96
5543 5802 2.106683 CGATGAACAGGCGAACCCC 61.107 63.158 0.00 0.00 36.11 4.95
5544 5803 2.106683 CCGATGAACAGGCGAACCC 61.107 63.158 0.00 0.00 36.11 4.11
5545 5804 2.750888 GCCGATGAACAGGCGAACC 61.751 63.158 0.00 0.00 44.22 3.62
5546 5805 2.785258 GCCGATGAACAGGCGAAC 59.215 61.111 0.00 0.00 44.22 3.95
5551 5810 1.951130 CCGATCGCCGATGAACAGG 60.951 63.158 10.32 0.00 41.76 4.00
5552 5811 2.589492 GCCGATCGCCGATGAACAG 61.589 63.158 10.32 0.00 41.76 3.16
5553 5812 2.584970 GCCGATCGCCGATGAACA 60.585 61.111 10.32 0.00 41.76 3.18
5554 5813 2.584970 TGCCGATCGCCGATGAAC 60.585 61.111 10.32 0.00 41.76 3.18
5555 5814 2.279451 CTGCCGATCGCCGATGAA 60.279 61.111 10.32 0.00 41.76 2.57
5556 5815 4.950062 GCTGCCGATCGCCGATGA 62.950 66.667 10.32 0.00 41.76 2.92
5570 5829 3.386867 GAACTCCAATGCGCCGCTG 62.387 63.158 11.67 0.00 0.00 5.18
5571 5830 3.127533 GAACTCCAATGCGCCGCT 61.128 61.111 11.67 0.00 0.00 5.52
5572 5831 4.179579 GGAACTCCAATGCGCCGC 62.180 66.667 4.18 0.00 35.64 6.53
5573 5832 3.508840 GGGAACTCCAATGCGCCG 61.509 66.667 4.18 0.00 37.91 6.46
5574 5833 3.140814 GGGGAACTCCAATGCGCC 61.141 66.667 4.18 0.00 37.91 6.53
5575 5834 3.508840 CGGGGAACTCCAATGCGC 61.509 66.667 0.00 0.00 37.91 6.09
5576 5835 2.824041 CCGGGGAACTCCAATGCG 60.824 66.667 0.00 0.00 37.91 4.73
5577 5836 3.140814 GCCGGGGAACTCCAATGC 61.141 66.667 2.18 0.00 37.91 3.56
5578 5837 2.824041 CGCCGGGGAACTCCAATG 60.824 66.667 14.46 0.00 37.91 2.82
5579 5838 4.109675 CCGCCGGGGAACTCCAAT 62.110 66.667 21.95 0.00 38.47 3.16
5597 5856 4.812476 TCCATGCCGCCTCGAACG 62.812 66.667 0.69 0.69 0.00 3.95
5598 5857 2.892425 CTCCATGCCGCCTCGAAC 60.892 66.667 0.00 0.00 0.00 3.95
5599 5858 4.838152 GCTCCATGCCGCCTCGAA 62.838 66.667 0.00 0.00 35.15 3.71
5612 5871 1.745264 CTCCTTGAGGATCGGCTCC 59.255 63.158 0.00 0.00 44.46 4.70
5613 5872 1.068921 GCTCCTTGAGGATCGGCTC 59.931 63.158 0.00 0.00 44.46 4.70
5614 5873 2.439104 GGCTCCTTGAGGATCGGCT 61.439 63.158 0.00 0.00 44.46 5.52
5615 5874 2.110006 GGCTCCTTGAGGATCGGC 59.890 66.667 0.00 0.88 44.46 5.54
5616 5875 1.445095 CAGGCTCCTTGAGGATCGG 59.555 63.158 0.00 0.00 44.46 4.18
5617 5876 1.333636 ACCAGGCTCCTTGAGGATCG 61.334 60.000 0.00 0.00 44.46 3.69
5618 5877 0.179936 CACCAGGCTCCTTGAGGATC 59.820 60.000 0.00 0.00 44.46 3.36
5619 5878 1.919600 GCACCAGGCTCCTTGAGGAT 61.920 60.000 0.00 0.00 44.46 3.24
5620 5879 2.596851 GCACCAGGCTCCTTGAGGA 61.597 63.158 0.00 0.00 43.08 3.71
5621 5880 2.045536 GCACCAGGCTCCTTGAGG 60.046 66.667 0.00 0.00 40.25 3.86
5622 5881 2.045536 GGCACCAGGCTCCTTGAG 60.046 66.667 0.00 0.00 44.01 3.02
5630 5889 2.904131 GGAGAGTAGGCACCAGGC 59.096 66.667 0.00 0.00 43.74 4.85
5631 5890 2.427245 CCGGAGAGTAGGCACCAGG 61.427 68.421 0.00 0.00 0.00 4.45
5632 5891 1.379977 TCCGGAGAGTAGGCACCAG 60.380 63.158 0.00 0.00 0.00 4.00
5633 5892 1.379977 CTCCGGAGAGTAGGCACCA 60.380 63.158 28.21 0.00 35.21 4.17
5634 5893 3.527641 CTCCGGAGAGTAGGCACC 58.472 66.667 28.21 0.00 35.21 5.01
5642 5901 5.710567 TGAATACATACCATACTCCGGAGAG 59.289 44.000 37.69 24.09 46.36 3.20
5643 5902 5.637127 TGAATACATACCATACTCCGGAGA 58.363 41.667 37.69 20.97 0.00 3.71
5644 5903 5.977489 TGAATACATACCATACTCCGGAG 57.023 43.478 30.11 30.11 0.00 4.63
5645 5904 6.928348 ATTGAATACATACCATACTCCGGA 57.072 37.500 2.93 2.93 0.00 5.14
5646 5905 7.094805 CCAAATTGAATACATACCATACTCCGG 60.095 40.741 0.00 0.00 0.00 5.14
5647 5906 7.573096 GCCAAATTGAATACATACCATACTCCG 60.573 40.741 0.00 0.00 0.00 4.63
5648 5907 7.448469 AGCCAAATTGAATACATACCATACTCC 59.552 37.037 0.00 0.00 0.00 3.85
5649 5908 8.292448 CAGCCAAATTGAATACATACCATACTC 58.708 37.037 0.00 0.00 0.00 2.59
5650 5909 7.255590 GCAGCCAAATTGAATACATACCATACT 60.256 37.037 0.00 0.00 0.00 2.12
5651 5910 6.863126 GCAGCCAAATTGAATACATACCATAC 59.137 38.462 0.00 0.00 0.00 2.39
5652 5911 6.777091 AGCAGCCAAATTGAATACATACCATA 59.223 34.615 0.00 0.00 0.00 2.74
5653 5912 5.599656 AGCAGCCAAATTGAATACATACCAT 59.400 36.000 0.00 0.00 0.00 3.55
5654 5913 4.955450 AGCAGCCAAATTGAATACATACCA 59.045 37.500 0.00 0.00 0.00 3.25
5655 5914 5.507985 GGAGCAGCCAAATTGAATACATACC 60.508 44.000 0.00 0.00 36.34 2.73
5663 5922 1.203038 TGAGGGAGCAGCCAAATTGAA 60.203 47.619 0.00 0.00 38.95 2.69
5669 5928 1.681666 CTCTTGAGGGAGCAGCCAA 59.318 57.895 0.00 0.00 38.95 4.52
5700 5959 4.680702 TGCGGGTAAAAACCTAACAAAAC 58.319 39.130 0.00 0.00 0.00 2.43
5775 6758 4.457603 CGGGTACAAACAGATCATTTCCAA 59.542 41.667 0.00 0.00 0.00 3.53
5791 6774 1.112113 GAGGATCAGCTTCGGGTACA 58.888 55.000 0.00 0.00 33.17 2.90
5802 6785 5.527951 CCATGTCAAAATCTCAGAGGATCAG 59.472 44.000 0.00 0.00 37.82 2.90
5803 6786 5.190330 TCCATGTCAAAATCTCAGAGGATCA 59.810 40.000 0.00 0.00 37.82 2.92
5804 6787 5.678583 TCCATGTCAAAATCTCAGAGGATC 58.321 41.667 0.00 0.00 0.00 3.36
5808 6791 7.718314 TGGATTATCCATGTCAAAATCTCAGAG 59.282 37.037 10.29 0.00 42.67 3.35
5809 6792 7.576403 TGGATTATCCATGTCAAAATCTCAGA 58.424 34.615 10.29 0.00 42.67 3.27
5872 8590 1.488705 ATCCAACGCCCTTCTCACCA 61.489 55.000 0.00 0.00 0.00 4.17
5884 8602 3.684305 TCTTTGACACTATGCATCCAACG 59.316 43.478 0.19 0.00 0.00 4.10
5891 8609 5.405935 TTCTAGCTCTTTGACACTATGCA 57.594 39.130 0.00 0.00 0.00 3.96
5897 8615 4.094146 GCCTCATTTCTAGCTCTTTGACAC 59.906 45.833 0.00 0.00 0.00 3.67
5898 8616 4.256920 GCCTCATTTCTAGCTCTTTGACA 58.743 43.478 0.00 0.00 0.00 3.58
5901 8619 3.308323 GTCGCCTCATTTCTAGCTCTTTG 59.692 47.826 0.00 0.00 0.00 2.77
5902 8620 3.196685 AGTCGCCTCATTTCTAGCTCTTT 59.803 43.478 0.00 0.00 0.00 2.52
5903 8621 2.763448 AGTCGCCTCATTTCTAGCTCTT 59.237 45.455 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.